Citrus Sinensis ID: 016162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAASPHRA
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHcccccEEEEcccccccHHHHHHcccccccEEEEcccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHccccccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEccccccHHHHHHHHcccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccEccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHEEEEcccccccHHHHHccEEcccHHHHHccccEEEEcccccccccccEcHHHHccccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpgtrWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAvgynnvdvnaankygiavgntpgvlTETTAELAASLSLAAARRIVEADEFMraglydgwlpnlfvgnllkgqtvgvigagrIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLkangeqpvtwkrASSMDEVLREADvislhpvldkttYHLINKERLATMKKEAILVncsrgpviDEVALVEHlkqnpmfrvgldvfedepymkpglsemknAIVVPHIASASKWTREGMATLAALNVLGkikgypiwgnpnqvepflnenaqppaaspsivnskvcrfqgfklsaasphra
Flexible Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFlkangeqpvtwKRASSMDEVLREAdvislhpvldkttYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFklsaasphra
Low Complexity Region (SEG)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVltettaelaaslslaaaRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAASPHRA
Disordered region (IsUnstruct)
******IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVE*******************KVCRFQG***********
Disordered Region (DISOPRED)
*****************VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQG***********
Disordered Region (DISEMBL)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFK*********
Disordered Region (DISPRO)
**KPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAAS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAASPHRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
P13443	382	Glycerate dehydrogenase O	N/A	no	0.956	0.986	0.909	0.0
Q9C9W5	386	Glycerate dehydrogenase H	yes	no	0.956	0.976	0.909	0.0
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.774	0.913	0.388	7e-51
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.779	0.905	0.383	5e-50
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.677	0.806	0.419	6e-49
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.695	0.815	0.385	3e-48
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.685	0.813	0.412	8e-48
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.611	0.719	0.418	2e-47
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.733	0.867	0.388	1e-46
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.774	0.913	0.385	3e-43

>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/377 (90%), Positives = 365/377 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNAI+VPHIASASKWTREGMATLAALNVLGKIKGYP+W +PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPVWSDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           +EN  PPAASPSIVN+K
Sbjct: 361 DENVSPPAASPSIVNAK 377

Cucumis sativus (taxid: 3659)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana GN=HPR PE=1 SV=1

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/377 (90%), Positives = 365/377 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++Q CRVEIC  KKTILSVEDII LIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQGCRVEICHLKKTILSVEDIIDLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMR GLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAMMKKEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           +EP+MKPGL++ KNAIVVPHIASASKWTREGMATLAALNVLG++KGYPIW +PN+V+PFL
Sbjct: 301 EEPFMKPGLADTKNAIVVPHIASASKWTREGMATLAALNVLGRVKGYPIWHDPNRVDPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NENA PP ASPSIVNSK
Sbjct: 361 NENASPPNASPSIVNSK 377

Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  201 bits (511), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 192/332 (57%), Gaps = 27/332 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E  
Sbjct: 2   KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   K  +N AVGY+N+D+  A K G+ + NTP VLT  TA++A  L LA 
Sbjct: 58  DAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD+F+R+G +      W P +F+G  + G+T+G++G GRIG A AR   +GF M
Sbjct: 116 ARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++Y    +   +EK + A  +F+               +DE+L+E+D + L   L K T
Sbjct: 175 RILYNSRTRKPEVEKELGA--EFM--------------PLDELLKESDFVVLVVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ L++  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLG 342
            + N ++ PHI SA+   REGMA L A N++ 
Sbjct: 279 SLDNVVLAPHIGSATYGAREGMAELVARNLIA 310

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  198 bits (504), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 190/336 (56%), Gaps = 29/336 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+  
Sbjct: 5   KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKI 59

Query: 75  -GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
             E + AA      K  S  +VG++++D+  A K GI V +TPGVLT+  AE    L LA
Sbjct: 60  DAEVMDAA---PNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILA 116

Query: 134 AARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
             RRIVEAD+ +R G +D  W P    G  LKG+T+G++G GRIG A A+ +   F + +
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKI 175

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD+ +   +E  +         N E        + +D +L ++D++S+H  L K TYH
Sbjct: 176 LYYDIERRWDVETVI--------PNME-------FTDLDTLLEKSDIVSIHVPLTKETYH 220

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LS 310
           LIN+ERL  MKK A L+N +RGPV+D  ALV+ LK+  +    LDVFE EP + P   L+
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEP-LPPNHPLT 279

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           +  N ++ PHIASA+   R+ MA LAA N++  +KG
Sbjct: 280 KFDNVVLAPHIASATIEARQRMAELAARNLIAVLKG 315

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  195 bits (495), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 178/303 (58%), Gaps = 36/303 (11%)

Query: 49  ILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108
           +  V+ ++ L+ DK D    +L E+  +           K  +  AVGY+N+D+  A K 
Sbjct: 43  VREVDALVTLVTDKVDK---ELLENAPKL----------KIIAQYAVGYDNIDIEEATKR 89

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLK 164
           GI V NTPGVLT+ TA+LA +L LA ARRIVEAD F+R+G +     GW P +F+G  LK
Sbjct: 90  GIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLK 149

Query: 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVT 223
           G+T+G++G GRIG A A+   +GF M +IYY   +    E+ + A Y  F          
Sbjct: 150 GKTLGIVGFGRIGQALAKR-AKGFGMKIIYYSRTRKPEAEEEIGAEYVDF---------- 198

Query: 224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 283
                  + +L+E+D ISLH  L K TYH+I ++ L  MK  AIL+N SRG V+D  AL+
Sbjct: 199 -------ETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALI 251

Query: 284 EHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGK 343
           + LK+  +   GLDVFE+EPY    L ++KN ++ PHI SA+   REGMA L A N++  
Sbjct: 252 KALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEAREGMAELVAKNLIAF 311

Query: 344 IKG 346
            KG
Sbjct: 312 AKG 314

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/298 (38%), Positives = 170/298 (57%), Gaps = 24/298 (8%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E ++  + D  D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V
Sbjct: 37  EKLLEKVKD-VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYV 93

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTV 168
            NTP VLT  TA+ A +L LA AR +V+ D+F+R+G +      W P  F+G  L G+T+
Sbjct: 94  TNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTI 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A AR   +GF M ++YY   + ++ EK + A                   
Sbjct: 154 GIVGFGRIGQAIARR-AKGFNMRILYYSRTRKSQAEKELGA----------------EYR 196

Query: 229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288
            ++EVL+E+D + L   L K T ++IN+ERL  MK  AILVN +RG V+D  AL++ LK+
Sbjct: 197 PLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKE 256

Query: 289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             +   GLDVFE+EPY    L  + N ++ PHI SA+   RE MA L A N++   +G
Sbjct: 257 GWIAGAGLDVFEEEPYYNEELFSLDNVVLTPHIGSATFEAREAMAELVARNLIAFKRG 314

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  191 bits (485), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 180/296 (60%), Gaps = 26/296 (8%)

Query: 55  IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN 114
           II  + D CD ++  LT+     +F A  +   +  +  AVGY+N+DV  A K GI V N
Sbjct: 39  IIERVKD-CDALVSLLTDPIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTN 95

Query: 115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGA 173
           TPGVLTETTA+ A +L +AAARR+VEAD ++R G +   W P + +G  + G+T+G++G 
Sbjct: 96  TPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGM 155

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDE 232
           GRIG+A AR   +GF M ++YYD   + R E F    G +++               +++
Sbjct: 156 GRIGAAVARR-AKGFGMRILYYD---SIRREDFEKELGVEYV--------------PLEK 197

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +L E+D +SLH  L + TYH+I +E+L  MK+ AILVN SRG V+D+ AL + LK+  + 
Sbjct: 198 LLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIA 257

Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             GLDVFE EP + P   L +++N ++ PH ASAS  TR  MA + A N++   +G
Sbjct: 258 GAGLDVFEQEP-IPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLIAFKRG 312

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/265 (41%), Positives = 160/265 (60%), Gaps = 24/265 (9%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           +  + MAVG++N+DV  A + GI V NTPGVLTE TAE   +L LAAARR+VEAD F+R 
Sbjct: 70  RIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRW 129

Query: 148 G----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G    L  GW P + +G  L+G+T+G++G GRIGS  A +  + F M +IY+   +   +
Sbjct: 130 GEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIG-KAFGMRIIYHSRSRKREI 188

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK + A                   S++++LRE+D++S+H  L   T HLI +  L  MK
Sbjct: 189 EKELGA----------------EYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMK 232

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHI 321
           K AILVN  RG ++D  ALV+ L++  +    LDVFE+EP + P   L+  KN ++ PH 
Sbjct: 233 KTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEP-LNPNHPLTAFKNVVLAPHA 291

Query: 322 ASASKWTREGMATLAALNVLGKIKG 346
           ASA++ TR  MA +AA N++   +G
Sbjct: 292 ASATRETRLRMAMMAAENLVAFAQG 316

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/314 (38%), Positives = 183/314 (58%), Gaps = 25/314 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N
Sbjct: 18  MLKEHFEVEVWPEEREI-PREVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVAN 73

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD- 151
            AVGY+N+DV  A + GI V NTP VLT+ TA+ A +L LA ARR++EAD F R+G +  
Sbjct: 74  YAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKR 133

Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY   +    EK + 
Sbjct: 134 RGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARR-ARGFGMRILYYSRSRKPEAEKELG 192

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F               S++++LRE+D + L   L K T ++IN+ERL  MKK AIL
Sbjct: 193 A--EF--------------RSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAIL 236

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328
           VN +RG V+D  AL++ LK+  +   GLDV+E+EPY    L  +KN ++ PHI SA+   
Sbjct: 237 VNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGA 296

Query: 329 REGMATLAALNVLG 342
           REGMA L A N++ 
Sbjct: 297 REGMAELVARNLIA 310

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 27/332 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I++L E    VE+  +++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITRAIP-ENGIDMLREH-FEVEVWPEEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F    R   +  +N AVGY+NVDV  A + GI V NTP VLT  TA+ A +L LA 
Sbjct: 58  DGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD F R+G +      W P +F+G+ + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    E+ + A  +F                ++E+L+E+D + L   L K T
Sbjct: 175 RILYYSRTRKPEAEEELKA--EF--------------KPLEELLKESDFVVLAVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+I +  L  MK  AILVN +RG V+D  AL++ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLG 342
            +KN I+ PHI SA+   REGMA L A N++ 
Sbjct: 279 SLKNVILAPHIGSATFGAREGMAELVARNLIA 310

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
255581842	386	hydroxypyruvate reductase, putative [Ric	0.956	0.976	0.965	0.0
118489484	386	unknown [Populus trichocarpa x Populus d	0.956	0.976	0.944	0.0
225428049	386	PREDICTED: glycerate dehydrogenase [Viti	0.956	0.976	0.931	0.0
147805559	386	hypothetical protein VITISV_020147 [Viti	0.956	0.976	0.931	0.0
13873334	386	hydroxypyruvate reductase [Bruguiera gym	0.956	0.976	0.938	0.0
224078341	386	predicted protein [Populus trichocarpa]	0.956	0.976	0.938	0.0
388493492	388	unknown [Lotus japonicus]	0.956	0.971	0.917	0.0
118723307	386	hydroxypyruvate reductase [Solenostemon	0.956	0.976	0.917	0.0
449454213	382	PREDICTED: glycerate dehydrogenase-like	0.956	0.986	0.909	0.0
388506608	386	unknown [Medicago truncatula]	0.979	1.0	0.891	0.0

>gi|255581842|ref|XP_002531721.1| hydroxypyruvate reductase, putative [Ricinus communis] gi|223528624|gb|EEF30641.1| hydroxypyruvate reductase, putative [Ricinus communis]

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/377 (96%), Positives = 371/377 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQATRLEKFVTAYG FL+ANGEQPVTWKRASSMDEVLR ADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQATRLEKFVTAYGAFLQANGEQPVTWKRASSMDEVLRVADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+WGNPNQVEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNQVEPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NENA PPAASPSIVN+K
Sbjct: 361 NENAPPPAASPSIVNAK 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489484|gb|ABK96544.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/377 (94%), Positives = 373/377 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PNQV PFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNQVAPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NENA PPAASPSIVN+K
Sbjct: 361 NENAPPPAASPSIVNAK 377

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428049|ref|XP_002279281.1| PREDICTED: glycerate dehydrogenase [Vitis vinifera] gi|297744600|emb|CBI37862.3| unnamed protein product [Vitis vinifera]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/377 (93%), Positives = 372/377 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIW +PN+VEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWHDPNKVEPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NEN+ PPAASPSIVN+K
Sbjct: 361 NENSLPPAASPSIVNAK 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805559|emb|CAN65023.1| hypothetical protein VITISV_020147 [Vitis vinifera]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/377 (93%), Positives = 372/377 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIW +PN+VEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWHDPNKVEPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NEN+ PPAASPSIVN+K
Sbjct: 361 NENSLPPAASPSIVNAK 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13873334|dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorhiza]

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/377 (93%), Positives = 373/377 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP G+YRVVSTKPMPGTRWINLL++QDCR+EICT+KKTILSVEDIIAL+G
Sbjct: 1   MAKPVSIEVWNPRGRYRVVSTKPMPGTRWINLLVQQDCRLEICTEKKTILSVEDIIALMG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALS+AGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA++MDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAATMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LA+MKKEA+LVNCSRGPVIDEVALVEHL++NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLASMKKEAVLVNCSRGPVIDEVALVEHLRRNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NENA PPAA PSIVNSK
Sbjct: 361 NENAPPPAACPSIVNSK 377

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078341|ref|XP_002305524.1| predicted protein [Populus trichocarpa] gi|222848488|gb|EEE86035.1| predicted protein [Populus trichocarpa]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/377 (93%), Positives = 373/377 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQ+KTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQQKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PN+V PFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNRVAPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NENA PPAASPSIVN+K
Sbjct: 361 NENAPPPAASPSIVNAK 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493492|gb|AFK34812.1| unknown [Lotus japonicus]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/377 (91%), Positives = 369/377 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  EKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAY  FLKANGE PVTWKRASSMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRASSMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHL+QNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEAALVEHLRQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           +EPYMKPGL+E+KNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+W + N+VEPFL
Sbjct: 301 EEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANKVEPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           +ENAQPPAASPSIVN+K
Sbjct: 361 DENAQPPAASPSIVNAK 377

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723307|gb|ABL10359.1| hydroxypyruvate reductase [Solenostemon scutellarioides]

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/377 (91%), Positives = 367/377 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+ +EV+NPNGKYRVVSTK MPGTRWINLL++QDCR+EICT+KKTILSVEDII+LIG
Sbjct: 1   MAKPLQVEVYNPNGKYRVVSTKSMPGTRWINLLVDQDCRLEICTEKKTILSVEDIISLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGG AFSNMAVGYNNVDV+AANK+G+AVGNTPGVLT
Sbjct: 61  NKCDGVIGQLTEDWGEKLFSALSRAGGTAFSNMAVGYNNVDVDAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFL+ANGEQPVTWKRASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLQANGEQPVTWKRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL +MKNAI+VPHIASASKWTREGMATLAALNVLGKIKGYPIWG+PN V PFL
Sbjct: 301 DEPYMKPGLEKMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPIWGDPNNVAPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NEN+ PPAA PSIVNSK
Sbjct: 361 NENSPPPAACPSIVNSK 377

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454213|ref|XP_004144850.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|449508825|ref|XP_004163421.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|118564|sp|P13443.1|DHGY_CUCSA RecName: Full=Glycerate dehydrogenase; Short=GDH; AltName: Full=NADH-dependent hydroxypyruvate reductase; Short=HPR gi|18264|emb|CAA41434.1| NADH-dependent hydroxypyruvate reductase [Cucumis sativus] gi|18275|emb|CAA32764.1| unnamed protein product [Cucumis sativus]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/377 (90%), Positives = 365/377 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNAI+VPHIASASKWTREGMATLAALNVLGKIKGYP+W +PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPVWSDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           +EN  PPAASPSIVN+K
Sbjct: 361 DENVSPPAASPSIVNAK 377

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506608|gb|AFK41370.1| unknown [Medicago truncatula]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/386 (89%), Positives = 370/386 (95%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSI+VWNPNGKYRVVSTK MPGTRWINLLI+QDCR+EICT+KKTILSVED IALIG
Sbjct: 1   MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDTIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALS+AGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG FLKANGE PVTWKRA+SMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAIL+NCSRGPVIDEVALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+E+KNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+W + N+VEPFL
Sbjct: 301 DEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKVCRFQGFKL 386
           NENAQPPAA PSIVN+K       KL
Sbjct: 361 NENAQPPAACPSIVNAKALSLPVSKL 386

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.299	0.365	0.389	6.4e-40
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.609	0.740	0.355	1.1e-34
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.609	0.740	0.359	2.8e-34
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.616	0.740	0.339	4.6e-34
TIGR_CMR|BA_5135	330	BA_5135 "D-isomer specific 2-h	0.779	0.930	0.295	5.2e-33
TIGR_CMR|SPO_1570	330	SPO_1570 "D-isomer specific 2-	0.677	0.809	0.306	1.8e-32
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.370	0.278	0.36	3.6e-32
UNIPROTKB|P37666	324	ghrB "GhrB" [Escherichia coli	0.614	0.746	0.360	4.2e-31
UNIPROTKB|Q5TM04	328	2-KGalARE "Glyoxylate/hydroxyp	0.637	0.765	0.344	1.1e-30
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.657	0.789	0.326	1.8e-30

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 236 (88.1 bits), Expect = 6.4e-40, Sum P(2) = 6.4e-40
 Identities = 46/118 (38%), Positives = 75/118 (63%)

Query:   229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288
             +++E+L+ AD I+++   +   +H+I++E+   MKK A +VN SRGP++ E AL   LK 
Sbjct:   191 TLEELLQTADFITINCAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKT 250

Query:   289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             N +    LDVFE EP +   L  +KN ++ PH+ +A+  TR+ MA +A  N+L  +KG
Sbjct:   251 NEIEGAALDVFEFEPKITEELKGLKNVVLAPHVGNATFETRDAMAEMAVRNILAVLKG 308

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 91/256 (35%), Positives = 139/256 (54%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N DV+  ++ GI + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    + T LE+ + A 
Sbjct:   131 TRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S+D++L EAD + L   L + T HLI +  L+ MK  AIL+N
Sbjct:   190 -QF--------------RSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILIN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
              +RGP++DE AL+E L+   +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+
Sbjct:   235 IARGPIVDEPALIEALQNGTIRGAGLDVYEKEPLKESPLFQLKNAVTLPHIGSATTETRQ 294

Query:   331 GMATLAALNVLGKIKG 346
              MA  A  N+   + G
Sbjct:   295 AMADRAYHNLRNALLG 310

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 92/256 (35%), Positives = 138/256 (53%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N D+   N+ G+ + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAELDAWTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    +   LE+ + A 
Sbjct:   131 QASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRKAALEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S++++L EAD + L   L + T HLI+   LA MK  AILVN
Sbjct:   190 -QF--------------RSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
              SRGPV+DE AL+E L++  +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+
Sbjct:   235 ISRGPVVDEPALIEALQKGQIRGAGLDVYEKEPLAESPLFQLKNAVTLPHIGSATHETRD 294

Query:   331 GMATLAALNVLGKIKG 346
              MA  A  N+   + G
Sbjct:   295 AMAARAMSNLRSALLG 310

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/262 (33%), Positives = 135/262 (51%)

Query:    82 LSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             ++RAG   +  +    G +N+DV +A + GI V NTPGV                 RR+ 
Sbjct:    65 MARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMH 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E  + M AG +DGW P   +G  L G+ +G+IG GRIG A AR     F M + Y++   
Sbjct:   125 EGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARR-ARAFGMQIHYHNRKP 183

Query:   200 -ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
              ++R+E+ + A              W    S+D++L   D++S++      T+HLIN  R
Sbjct:   184 VSSRIEESLEA------------TYW---DSLDQMLARMDIVSINCPHTPATFHLINARR 228

Query:   259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVV 318
             L  MK EA ++N +RG VIDE AL   ++   +   GLDVFE EP + P L  + N +++
Sbjct:   229 LGLMKPEAYIINTARGEVIDEAALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLL 288

Query:   319 PHIASASKWTREGMATLAALNV 340
             PH+ SA+   R  M     +N+
Sbjct:   289 PHMGSATIEGRTEMGEKVIINI 310

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|BA_5135 BA_5135 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 99/335 (29%), Positives = 165/335 (49%)

Query:    15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             K +V   +P+P   ++   + + C  E   Q + +   + ++  I DK DG++       
Sbjct:    12 KPKVYIAEPVP--TFVENYLSEHCDYEKWEQNEKVPR-DVLLEKIQDK-DGLLN-FGSAI 66

Query:    75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXX 134
              E L  A      K  SN++VGY+N D+ A  K+ +   NTP V                
Sbjct:    67 NEELLEAAPNL--KVVSNISVGYDNFDLQAMAKHNVIGTNTPYVLDDTVADLVFALMLSA 124

Query:   135 XRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              RR+ E D +++ G ++  +     G  +   T+G+IG GRIG A A+    GF M+++Y
Sbjct:   125 GRRVCELDSYVKNGEWNAEIGKEHFGLDVHHSTIGIIGMGRIGEAVAKRAKFGFDMDVLY 184

Query:   195 YDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYH 252
             Y+  +    E KF   Y                   +  +L+++D ++ L P+ D+T YH
Sbjct:   185 YNRRRKEEAEQKFDATY-----------------CDLQTLLKQSDFIVLLTPLTDET-YH 226

Query:   253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSE 311
             LI ++  + MK+ AI +N SRG  +DE AL++ L +  +F  G+D F  EP  K   L  
Sbjct:   227 LIGEKEFSFMKETAIFINASRGKTVDEEALIDALTEKKIFAAGIDTFTQEPIQKDNPLLS 286

Query:   312 MKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             ++N + +PHI SA+  TR+ MA  AA N++  ++G
Sbjct:   287 LQNVVTLPHIGSATLKTRQQMAMTAAENLVAGLQG 321

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_1570 SPO_1570 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 87/284 (30%), Positives = 141/284 (49%)

Query:    64 DGVIGQLTEDWG-ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
             D ++  +T+  G E L     +   +  +N  VGY+++D +A   +GI V NTP V    
Sbjct:    55 DAILPTVTDKLGAEALDVTAPQT--RLLANYGVGYSHIDSDAVRAHGITVSNTPDVLSEC 112

Query:   123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                          RR  E +  +RAG + GW P   VG+ + G+ +G++G GRIG A A+
Sbjct:   113 TADIAMTLMLMVARRAGEGERELRAGQWTGWRPTHLVGSKVSGKVLGIVGFGRIGQAMAQ 172

Query:   183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
                 GF M ++  +  ++   +  +  YG              +  ++D +L + D +SL
Sbjct:   173 RAHHGFGMKILVQN--RSAVPQDVLDRYGA------------TQVETLDAMLPQCDFVSL 218

Query:   243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
             H        HLIN  RL  MK +A L+N +RG V+DE AL + L  + +    LDVF+ E
Sbjct:   219 HCPGGAANRHLINSRRLDLMKPDAFLINTARGEVVDEHALAQALMFDCIGGAALDVFDGE 278

Query:   303 PYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             P + P L +  N +++PH+ SA++ TRE M      N++   +G
Sbjct:   279 PRIAPVLLDCDNLVMLPHLGSATRETREAMGMRVLDNLVDYFEG 322

GO:0008152 "metabolic process" evidence=ISS

GO:0050578 "(R)-2-hydroxyacid dehydrogenase activity" evidence=ISS

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 239 (89.2 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   200 ATRLEKFVT---AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             A R++ F T    Y  F+     Q +      S++E+L+ +D++++H  L+  T +LIN+
Sbjct:   155 AKRVKAFETRVIGYDPFISEERAQ-MLGITLMSLEELLQNSDIVTMHLPLNNETRNLINR 213

Query:   257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 316
             ERL  MKK A ++NC+RG +IDE AL E LK   +    LDVF  EP  +  L E+ N I
Sbjct:   214 ERLKLMKKSAFIINCARGGIIDEEALYEALKAGEIAGAALDVFSKEPLTESPLFELPNVI 273

Query:   317 VVPHIASASKWTREGMATLAALNVLGKIKG 346
             V PH+ +++K  +  +A   A  +   +KG
Sbjct:   274 VTPHLGASTKEAQINVAIDVAREIASVLKG 303

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|P37666 ghrB "GhrB" [Escherichia coli K-12 (taxid:83333)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 94/261 (36%), Positives = 134/261 (51%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A S ++VGY+N DV+A     I + +TP V                 RR+VE  E ++A
Sbjct:    68 RATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +   + G  +  +T+G++G GRIG A A+    GF M +    LY A R  K  
Sbjct:   128 GEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPI----LYNARRHHK-- 181

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  +F   N        R   +D +L+E+D + L   L   T+HL   E+ A MK  AI
Sbjct:   182 EAEERF---NA-------RYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASAS 325
              +N  RGPV+DE AL+  L++  +   GLDVFE EP     P LS M N + VPHI SA+
Sbjct:   232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS-MANVVAVPHIGSAT 290

Query:   326 KWTREGMATLAALNVLGKIKG 346
               TR GMA  A  N++  ++G
Sbjct:   291 HETRYGMAACAVDNLIDALQG 311

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046181 "ketogluconate catabolic process" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019521 "D-gluconate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=IEA;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5TM04 2-KGalARE "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 94/273 (34%), Positives = 136/273 (49%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A ++++VG +N D++   +  I + NTP V                 RR+VE    +RA
Sbjct:    68 RAVASVSVGVDNYDIDYLTQRRILLSNTPDVLTETTADTGFALILATARRVVELANLVRA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +     G  + G+T+G+IG GRIG A A+    GF M LIY+       +E+  
Sbjct:   128 GQWQRNIGPAHFGTDVHGKTLGIIGMGRIGEALAQRGHFGFGMPLIYHSTRPKPAVEQRF 187

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  Q+               S++++L EAD I L   L + T  LI     A M+ E+I
Sbjct:   188 NA--QY--------------RSLEQLLEEADFICLTLPLTERTQGLIGAREFALMRPESI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASAS 325
              +N SRG V+DE AL+E L+Q  +   GLDVFE EP  +  P L ++ N +  PHI SA+
Sbjct:   232 FINISRGKVVDEAALIEALQQRRIRGAGLDVFEREPLDHDSP-LLQLPNVVATPHIGSAT 290

Query:   326 KWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
               TRE MA  A  N+L  + G      PN V P
Sbjct:   291 HETREAMARCAVDNLLAALAGQR---PPNLVNP 320

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

GO:0046487 "glyoxylate metabolic process" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 91/279 (32%), Positives = 137/279 (49%)

Query:    82 LSRAGGKA--FSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             L++AG +    +N   G +++DV  A + GI V NTPGV                 RRI 
Sbjct:    65 LAQAGERMRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIP 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E    M+   + GW P   +G  + G+ +G++G GRIG A AR     F M + Y++   
Sbjct:   125 EGLAVMQKNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARR-ASAFGMQIHYHN--- 180

Query:   200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
               RL   V      L+A      TW    S+D+++   DVIS++     +T+HL+N  RL
Sbjct:   181 RRRLRPEVE---DALEA------TWW--DSLDQMIARMDVISVNCPSTPSTFHLMNARRL 229

Query:   260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319
               MK   ++VN SRG VIDE AL   ++   +   GLDV+E    + P L E+ N +++P
Sbjct:   230 KLMKPTGVIVNTSRGEVIDENALTRMIRTGEIAGAGLDVYEHGTQVNPRLRELPNVVLLP 289

Query:   320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
             H+ SA+   R  M     +N+     G+     P+QV P
Sbjct:   290 HMGSATLEGRIEMGEKVIINIKTFADGHR---PPDQVVP 325

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9W5	HPR1_ARATH	1, ., 1, ., 1, ., 2, 9	0.9098	0.9568	0.9766	yes	no
P13443	DHGY_CUCSA	1, ., 1, ., 1, ., 2, 9	0.9098	0.9568	0.9869	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
4th Layer	1.1.1.29	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	0.0
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-133
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	8e-85
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	6e-84
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-80
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	1e-78
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-78
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	2e-76
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	7e-72
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	2e-64
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	5e-64
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-62
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	4e-62
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	4e-60
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	5e-59
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	7e-59
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	4e-58
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	8e-57
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	2e-56
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-56
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	8e-56
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	5e-54
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	1e-53
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	1e-53
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	6e-53
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	6e-51
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	2e-49
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	5e-49
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	4e-47
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	4e-47
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	9e-46
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	4e-44
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	1e-40
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	8e-40
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-38
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	7e-37
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	3e-34
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	2e-32
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	4e-32
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	2e-31
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-30
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	4e-30
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	4e-30
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	4e-28
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-27
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	1e-25
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	1e-25
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	7e-25
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	5e-24
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	2e-23
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	2e-22
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	3e-18
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-16
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	3e-15
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	5e-15
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	3e-14
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	2e-13
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	5e-13
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	2e-12
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	5e-07
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	1e-05

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  796 bits (2058), Expect = 0.0
 Identities = 353/377 (93%), Positives = 372/377 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++QDCRVEICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKERLA MKKEA+LVN SRGPVIDEVALVEHLK NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGK+KGYP+WG+PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSK 377
           NENA PPAASPSIVN+K
Sbjct: 361 NENAPPPAASPSIVNAK 377

Length = 386

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  384 bits (990), Expect = e-133
 Identities = 135/332 (40%), Positives = 188/332 (56%), Gaps = 24/332 (7%)

Query: 16  YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWG 75
            +V+ T+ +P    + LL  +   VE+   +   L  E+++       DG++  LT+   
Sbjct: 1   PKVLVTRRLPE-EALALL-REGFEVEVW-DEDRPLPREELLEAAKG-ADGLLCTLTDKID 56

Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAA 135
             L  A      K  +N +VGY+++DV+AA   GI V NTP VLT+ TA+LA +L LAAA
Sbjct: 57  AELLDAAPPL--KVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAA 114

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE D F+RAG + GW P L +G  L G+T+G++G GRIG A AR    GF M ++Y+
Sbjct: 115 RRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAK-GFGMKILYH 173

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           +  +    E+ + A                   S+DE+L E+D +SLH  L   T HLIN
Sbjct: 174 NRSRKPEAEEELGAR----------------YVSLDELLAESDFVSLHCPLTPETRHLIN 217

Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKN 314
            ERLA MK  AIL+N +RG V+DE ALVE LK   +   GLDVFE EP      L  + N
Sbjct: 218 AERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPN 277

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            +++PHI SA+  TR  MA LAA N+L  + G
Sbjct: 278 VVLLPHIGSATVETRTAMAELAADNLLAVLAG 309

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  260 bits (667), Expect = 8e-85
 Identities = 116/320 (36%), Positives = 172/320 (53%), Gaps = 34/320 (10%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE-------DWGETLFAALSRAG 86
           +E++  V        ++S E+++  I D  D +I  L+        D  + L        
Sbjct: 17  LEENFEV-TYYDGLGLISKEELLERIAD-YDALITPLSTPVDKEIIDAAKNL-------- 66

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K  +N   G++N+DV+ A + GI V NTP V TE TAEL   L LA ARRI E D  MR
Sbjct: 67  -KIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMR 125

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
            G + GW P  F+G+ L G+T+G+IG GRIG A AR   + F M ++YY+ ++ +   + 
Sbjct: 126 RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARR-AKAFGMKILYYNRHRLSEETE- 183

Query: 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266
               G           T+     +DE+L+E+D +SLH      T+HLI+      MK  A
Sbjct: 184 -KELG----------ATYV---DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTA 229

Query: 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
            L+N +RGP++DE ALV+ LK   +    LDVFE EP + P L ++ N I+ PHI +A+ 
Sbjct: 230 YLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATV 289

Query: 327 WTREGMATLAALNVLGKIKG 346
             R+ MA  AA N++  ++G
Sbjct: 290 EARDAMAKEAADNIISFLEG 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  257 bits (660), Expect = 6e-84
 Identities = 128/312 (41%), Positives = 171/312 (54%), Gaps = 30/312 (9%)

Query: 32  LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI-GQLTEDWGETLFAALSRAGGKAF 90
           LL      V +    +  L+ E++I L+ D  DGVI G   +   E + AA  R   K  
Sbjct: 19  LLEAAGFEVVLNPLGR-PLTEEELIELLKD-ADGVIAG--LDPITEEVLAAAPRL--KVI 72

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           S   VGY+N+D+ AA K GI V NTPG  + + AEL   L LA AR+I +AD  +RAG  
Sbjct: 73  SRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG-- 130

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW     VG  L G+T+G+IG GRIG A AR +  GF M ++ YD Y            
Sbjct: 131 -GWDR--PVGTELYGKTLGIIGLGRIGKAVARRLS-GFGMKVLAYDPYPDE--------- 177

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
            +F K +G + V      S++E+L+E+D ISLH  L   T HLIN   LA MK  AIL+N
Sbjct: 178 -EFAKEHGVEFV------SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILIN 230

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTR 329
            +RG ++DE AL E LK   +    LDVFE+EP      L E+ N I+ PHI +++K   
Sbjct: 231 TARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAV 290

Query: 330 EGMATLAALNVL 341
             M T+AA NV+
Sbjct: 291 LRMGTMAAQNVI 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  249 bits (639), Expect = 1e-80
 Identities = 122/338 (36%), Positives = 174/338 (51%), Gaps = 29/338 (8%)

Query: 14  GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTED 73
            K  V+ST+ +P    +   +++   VE        L+ +  +A      D VI  + + 
Sbjct: 1   MKIVVLSTRKLP--PEVLERLKEKFEVERYEDD---LTPDTELAERLKDADAVITFVNDR 55

Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
               +   L     K  +  + GY+NVD+ AA + GI V N PG  TE  AE A +L LA
Sbjct: 56  IDAEVLEKLPGL--KLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILA 113

Query: 134 AARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
            ARRI E D  +R G +     P+  +G  L+G+T+G+IG GRIG A AR + +GF M +
Sbjct: 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRL-KGFGMKV 172

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD       EK      +++               +DE+L E+D+ISLH  L   T H
Sbjct: 173 LYYDRSPNPEAEK--ELGARYV--------------DLDELLAESDIISLHCPLTPETRH 216

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----G 308
           LIN E LA MK  AILVN +RG ++DE AL++ LK   +   GLDVFE+EP +       
Sbjct: 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLR 276

Query: 309 LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           L    N ++ PHIASA++  R+ MA LA  N+     G
Sbjct: 277 LDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDG 314

Length = 324

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  245 bits (626), Expect = 1e-78
 Identities = 138/336 (41%), Positives = 195/336 (58%), Gaps = 27/336 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E+   VE+   ++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITREIP-ENGIEML-EEHFEVEVWEDEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   +  +N AVGY+N+DV  A + GI V NTPGVLTE TA+ A +L LA 
Sbjct: 58  DCEVFEAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR+VEAD F+R+G +      W P +F+G  + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    EK + A                    ++E+LRE+D +SLH  L K T
Sbjct: 175 RILYYSRTRKPEAEKELGA----------------EYRPLEELLRESDFVSLHVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            +KN ++ PHI SA+   REGMA L A N++   +G
Sbjct: 279 SLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRG 314

Length = 333

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  243 bits (624), Expect = 2e-78
 Identities = 116/325 (35%), Positives = 160/325 (49%), Gaps = 52/325 (16%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           + LL E    V++       LS E+++A+I D  D +I     ++T +    +  A    
Sbjct: 13  LELLREAGIEVDV----APGLSEEELLAIIAD-ADALIVRSATKVTAE----VIEAAPRL 63

Query: 82  --LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
             + RAG        VG +N+DV AA   GI V N PG  T + AE   +L LA AR I 
Sbjct: 64  KVIGRAG--------VGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIP 115

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY- 198
           +AD  +RAG    W    F+G  L+G+T+G++G GRIG   AR     F M ++ YD Y 
Sbjct: 116 QADASLRAG---KWDRKKFMGVELRGKTLGIVGLGRIGREVARRAR-AFGMKVLAYDPYI 171

Query: 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
            A R                          S+DE+L EAD ISLH  L   T  LIN E 
Sbjct: 172 SAERAAAGGV-----------------ELVSLDELLAEADFISLHTPLTPETRGLINAEE 214

Query: 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAI 316
           LA MK  AIL+N +RG ++DE AL + LK   +    LDVFE EP       L  + N I
Sbjct: 215 LAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEP-PPADSPLLGLPNVI 273

Query: 317 VVPHIASASKWTREGMATLAALNVL 341
           + PH+ ++++  +E +A  AA  VL
Sbjct: 274 LTPHLGASTEEAQERVAVDAAEQVL 298

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  238 bits (609), Expect = 2e-76
 Identities = 107/295 (36%), Positives = 149/295 (50%), Gaps = 23/295 (7%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107
             L  +++ AL+ D  D +I   T      + A   +   K       G +N+D++AA K
Sbjct: 28  DDLLADELEALLAD-ADALIVSSTTPVTAEVLAKAPKL--KFIQVAGAGVDNIDLDAAKK 84

Query: 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167
            GI V N PG   E  AE A  L LA  RR+  AD  +R G    W    F G  L+G+T
Sbjct: 85  RGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAG--FPGYELEGKT 142

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG++G GRIG   A+ + + F M ++YYD  +    E+                    R 
Sbjct: 143 VGIVGLGRIGQRVAKRL-QAFGMKVLYYDRTRKPEPEED----------------LGFRV 185

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L ++DV+ LH  L   T HLIN+E LA MK  A+LVN +RG ++DE AL+  LK
Sbjct: 186 VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALK 245

Query: 288 QNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
              +    LDVFE EP      L E+ N I+ PHIA  ++  RE MA +A  N+ 
Sbjct: 246 SGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLE 300

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  227 bits (581), Expect = 7e-72
 Identities = 110/309 (35%), Positives = 153/309 (49%), Gaps = 25/309 (8%)

Query: 52  VEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIA 111
            E+ +       D +I  +T    E + AA      KA      G +N+D+ AA K GI 
Sbjct: 35  DEEELLEALADADALIVSVTP-VTEEVLAAAPN--LKAIGRAGAGVDNIDLEAATKRGIL 91

Query: 112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171
           V N PG    + AEL  +L LA ARRI +AD   R G    W    F G  L G+TVG+I
Sbjct: 92  VVNAPGGNAISVAELVLALLLALARRIPDADASQRRG---EWDRKAFRGTELAGKTVGII 148

Query: 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231
           G GRIG A A+ + + F M +I YD Y            G                 S+D
Sbjct: 149 GLGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAGVDGVVG---------------VDSLD 192

Query: 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291
           E+L EAD+++LH  L   T  LIN E LA MK  AIL+N +RG V+DE AL+  L    +
Sbjct: 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252

Query: 292 FRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
               LDVFE+EP +     L ++ N I+ PHI  ++   +E +A + A N++  + G P+
Sbjct: 253 AGAALDVFEEEP-LPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV 311

Query: 350 WGNPNQVEP 358
             N  +V+ 
Sbjct: 312 VNNAPEVDL 320

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  207 bits (530), Expect = 2e-64
 Identities = 92/247 (37%), Positives = 130/247 (52%), Gaps = 20/247 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           VG +N+DV  A K GI V NTPG  + + AEL   L L+ AR I  A+  M+ G    W 
Sbjct: 72  VGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLG---KWN 128

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              + G  L+G+T+G+IG GRIG   A++      MN+I YD Y        +       
Sbjct: 129 KKKYKGIELRGKTLGIIGFGRIGREVAKI-ARALGMNVIAYDPYPKDEQAVELGV----- 182

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                      +  S++E+L+ +D ISLH  L   T H+INK+ L  MK  AI++N SRG
Sbjct: 183 -----------KTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRG 231

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            VIDE AL+E LK   +    LDVFE+EP     L E+ N  + PHI +++K  +E +  
Sbjct: 232 GVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTKEAQERIGE 291

Query: 335 LAALNVL 341
             A  ++
Sbjct: 292 ELANKII 298

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  207 bits (528), Expect = 5e-64
 Identities = 99/282 (35%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 65  GVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTA 124
           G  G   E+    L + L     K  ++   GY+ +DV+A  K GI V NTPG + E TA
Sbjct: 60  GETGPFDEE----LISPLP-PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATA 114

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           + A  L L A R    A+   RAG + G+L      +  +G+T+G++G G IG A AR  
Sbjct: 115 DTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDP-RGKTLGILGLGGIGKAIARKA 173

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
              F M +IY++  +     +   A                   S+DE+L ++DV+SL+ 
Sbjct: 174 A-AFGMKIIYHNRSRLPEELEKALA---------------TYYVSLDELLAQSDVVSLNC 217

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L   T HLINK+  A MK   I+VN +RG VIDE ALV+ L+   +   GLDVFE+EP 
Sbjct: 218 PLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPE 277

Query: 305 MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           + PGL +M N  ++PH+ + +  T+E M  L   N+   ++ 
Sbjct: 278 VNPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEAFLET 319

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  203 bits (519), Expect = 1e-62
 Identities = 111/332 (33%), Positives = 161/332 (48%), Gaps = 42/332 (12%)

Query: 28  RWINLLIEQ----DCRVEIC-TQKKTILSVEDIIALIGDKCDGVIGQ---LTEDWGETLF 79
            + +L IE+    +  VE+   Q +T    +++I    D  D ++ Q   +T +    + 
Sbjct: 9   DFPDLDIEREVLEEAGVELVDAQSRTE---DELIEAAAD-ADALLVQYAPVTAE----VI 60

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
            AL R   K      VG +NVDV AA + GI V N P   TE  A+ A +L LA AR++ 
Sbjct: 61  EALPR--LKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLP 118

Query: 140 EADEFMRAGLYDGWLPNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197
             D  +RAG +D  +     G +  L+G T+G++G GRIG A A+   + F   +I YD 
Sbjct: 119 FLDRAVRAGGWDWTV----GGPIRRLRGLTLGLVGFGRIGRAVAKRA-KAFGFRVIAYDP 173

Query: 198 YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257
           Y                  +G   +   R  S+DE+L  +DV+SLH  L   T HLI+ E
Sbjct: 174 Y----------------VPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAE 217

Query: 258 RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAI 316
            LA MK  A LVN +RG ++DE AL   LK   +    LDV E+EP      L    N I
Sbjct: 218 ALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVI 277

Query: 317 VVPHIASASKWTREGMATLAALNVLGKIKGYP 348
           + PH A  S+ +   +   AA  V+  ++G P
Sbjct: 278 LTPHAAWYSEESLAELRRKAAEEVVRVLRGEP 309

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  202 bits (515), Expect = 4e-62
 Identities = 115/338 (34%), Positives = 163/338 (48%), Gaps = 32/338 (9%)

Query: 17  RVVSTKPMPGTRW--INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           +V+   P        +  L+     VE+     T   +++  AL+ D  D ++  + +  
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEV----VTAAELDEEAALLAD-ADVLVPGMRKVI 55

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L AA  R   +      VG + VD+ AA   GI V N PG   E+ AE A  L LA 
Sbjct: 56  DAELLAAAPRL--RLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLAL 113

Query: 135 ARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
            RR+ EAD  +RAG    W  P       L G+TVG++G G IG A AR +  GF + +I
Sbjct: 114 LRRLPEADRELRAG---RWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLR-GFGVEVI 169

Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253
           YYD               +F     E+     R   +DE+L E+DV+SLH  L   T HL
Sbjct: 170 YYD---------------RFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHL 214

Query: 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSE 311
           I  E LA MK  AIL+N +RG ++DE AL+  L+   +   GLDVF  EP + P   L  
Sbjct: 215 IGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEP-LPPDDPLLR 273

Query: 312 MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           + N I+ PHIA  +  + + MA + A N+   ++G P 
Sbjct: 274 LDNVILTPHIAGVTDESYQRMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  192 bits (490), Expect = 4e-60
 Identities = 88/196 (44%), Positives = 109/196 (55%), Gaps = 24/196 (12%)

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           +L LA ARRI EAD  +RAG    W P+  +G  L G+TVG+IG GRIG A AR + + F
Sbjct: 2   ALLLALARRIPEADRQVRAG---RWRPDALLGRELSGKTVGIIGLGRIGRAVARRL-KAF 57

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M +I YD Y     E     Y                  S+DE+L E+DV+SLH  L  
Sbjct: 58  GMKVIAYDRYPKAEAEALGARY-----------------VSLDELLAESDVVSLHLPLTP 100

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG 308
            T HLIN ERLA MK  AIL+N +RG ++DE AL+  LK   +    LDVFE EP   P 
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPL-PPD 159

Query: 309 --LSEMKNAIVVPHIA 322
             L E+ N I+ PHIA
Sbjct: 160 HPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  194 bits (494), Expect = 5e-59
 Identities = 95/316 (30%), Positives = 143/316 (45%), Gaps = 23/316 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           L+++   VE+  +    L  E+++    D  D +I + T      +  A      K  + 
Sbjct: 14  LLKEGGEVEVHDE----LLTEELLEAAKD-ADALIVRSTTPVTAEVLEAAPGL--KVIAR 66

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +N+D++AA + GI V N PG  TE+ AEL   L LA ARRI EAD  +RAG +  
Sbjct: 67  RGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKK 126

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
             P       L G+T+GVIG G IG   A +  +   M ++ YD Y      +       
Sbjct: 127 GGPIGL---ELYGKTLGVIGGGGIGGIGAAIA-KALGMGVVAYDPYPNPERAEEGGVEVL 182

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L               + ++    D+I+L P     T H+I  E    +K    + N  
Sbjct: 183 LLDLL------------LLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNAR 230

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 332
            G VI+E AL   L++         V E+ P +   L ++ N I+ PHIA A++  +E M
Sbjct: 231 GGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENM 290

Query: 333 ATLAALNVLGKIKGYP 348
           A  AA N+L  +KG  
Sbjct: 291 AEEAAENLLAFLKGGT 306

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  193 bits (494), Expect = 7e-59
 Identities = 91/274 (33%), Positives = 136/274 (49%), Gaps = 34/274 (12%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            DGV+ Q T  + E ++  L+  G K  +  + G + +D++ A + G+ + N P      
Sbjct: 45  YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
            AE A + +L   R   E D  +  G +  W P L +G  ++  TVG+IG GRIGSA A+
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFR-WAPGL-IGREIRDLTVGIIGTGRIGSAAAK 162

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +GF   +I YD Y    LEKF+  Y                  S++++L++AD+ISL
Sbjct: 163 IF-KGFGAKVIAYDPYPNPELEKFLLYY-----------------DSLEDLLKQADIISL 204

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H  L K  +HLIN E  A MK  AILVN +RG ++D  AL++ L    +    LD +E+E
Sbjct: 205 HVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENE 264

Query: 303 -PYMKPGLS-------------EMKNAIVVPHIA 322
             Y     S              M N ++ PHIA
Sbjct: 265 TGYFNKDWSGKEIEDEVLKELIAMPNVLITPHIA 298

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  197 bits (504), Expect = 4e-58
 Identities = 115/314 (36%), Positives = 154/314 (49%), Gaps = 60/314 (19%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG----QLTEDWGETLFAALS----- 83
           +++    VE+    KT L  E+++ +IGD  D +I     ++T +    +  A       
Sbjct: 16  ILKDAPGVEVDV--KTGLDKEELLEIIGD-YDALIVRSATKVTAE----VLEAAKNLKVI 68

Query: 84  -RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD 142
            RAG        VG +NVDV AA + GI V N P   T + AE   +L LA AR I +A 
Sbjct: 69  GRAG--------VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAH 120

Query: 143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLY--- 198
             ++AG    W    F+G  L G+T+G+IG GRIGS  A R     F M +I YD Y   
Sbjct: 121 ASLKAGK---WERKKFMGVELYGKTLGIIGLGRIGSEVAKRAK--AFGMKVIAYDPYISP 175

Query: 199 -QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257
            +A +L              G + V      S+DE+L  AD I+LH  L   T  LI  E
Sbjct: 176 ERAAQL--------------GVELV------SLDELLARADFITLHTPLTPETRGLIGAE 215

Query: 258 RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAI 316
            LA MK    ++NC+RG +IDE AL E LK   +    LDVFE EP    P L E+ N +
Sbjct: 216 ELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSP-LFELPNVV 274

Query: 317 VVPHIASASKWTRE 330
           V PH+  AS  T E
Sbjct: 275 VTPHLG-AS--TAE 285

Length = 526

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  187 bits (478), Expect = 8e-57
 Identities = 94/251 (37%), Positives = 137/251 (54%), Gaps = 24/251 (9%)

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           ++  VGY+ +D++AA   GI V NTPGVLT+  A+LA  L LA  RRI  AD F+RAG  
Sbjct: 69  ASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAG-- 126

Query: 151 DGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
             W    F +   + G+ VG++G GRIG A AR  +E F M + Y+      R  K    
Sbjct: 127 -RWPKGAFPLTRKVSGKRVGIVGLGRIGRAIAR-RLEAFGMEIAYHG-----RRPK---- 175

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
                       V ++  +S+ E+  E+DV+ +       T HL+N E L  +  + +LV
Sbjct: 176 ----------PDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLV 225

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329
           N +RG V+DE AL+  L++  +   GLDVFE+EP +   L ++ N ++ PHIASA+  TR
Sbjct: 226 NVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETR 285

Query: 330 EGMATLAALNV 340
             M  L   N+
Sbjct: 286 RAMGDLVLANL 296

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  187 bits (477), Expect = 2e-56
 Identities = 95/333 (28%), Positives = 144/333 (43%), Gaps = 41/333 (12%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
             +L      VEI T    +L+ ++   L     D ++   T+     L       G K 
Sbjct: 17  KEILKAGGVDVEIVT---YLLNDDETAELAKG-ADAILTAFTDKIDAELLDKA--PGLKF 70

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL 149
            S  A GY+N+D++ A + GI V N P       AE   +L LA  R     DE  +   
Sbjct: 71  ISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQD 130

Query: 150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
                  +  G  L+ QTVGV+G G+IG A A+   +GF M +I YD ++   LE     
Sbjct: 131 LQ-DAGVI--GRELEDQTVGVVGTGKIGRAVAQRA-KGFGMKVIAYDPFRNPELEDKGVK 186

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
           Y                  S++E+ + +D+ISLH  L    +H+IN+E    MKK  I++
Sbjct: 187 Y-----------------VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIII 229

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------------KPGLSEMKNA 315
           N +RG ++D  AL+E L    +F  GLDV EDE                    L    N 
Sbjct: 230 NTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNV 289

Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYP 348
           I+ PH A  +    + M  ++  N++  ++G  
Sbjct: 290 IITPHTAFYTDDALKNMVEISCENIVDFLEGEE 322

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  187 bits (477), Expect = 2e-56
 Identities = 99/287 (34%), Positives = 154/287 (53%), Gaps = 24/287 (8%)

Query: 66  VIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTA 124
           +I  +T ++ +  F        K  +   +GY+NVD+ AA ++G+ V   PG V  +  A
Sbjct: 51  IIASVTPNFDKEFFEYNDGL--KLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVA 108

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           E A +L L   R+I +A E ++ G +       FVG+ L G+TVG+IG G IGS  A ++
Sbjct: 109 EHAVALILTVLRKINQASEAVKEGKWT--ERANFVGHELSGKTVGIIGYGNIGSRVAEIL 166

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            EGF   ++ YD Y +           + +K  G +PV      S++E+L E+D+ISLH 
Sbjct: 167 KEGFNAKVLAYDPYVSE----------EVIKKKGAKPV------SLEELLAESDIISLHA 210

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L + TYH+IN++  + MKK  ILVN +RG +IDE AL+E LK   +   GLDV E+EP 
Sbjct: 211 PLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEP- 269

Query: 305 MKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           +K    L   +N ++ PHI + +  +  GM      ++   + G   
Sbjct: 270 IKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLAGKEP 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  185 bits (472), Expect = 8e-56
 Identities = 90/255 (35%), Positives = 132/255 (51%), Gaps = 30/255 (11%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY-- 150
           +A GYNNVD+ AA + GI V N PG  T++ A+   +L LA AR +   ++ ++AG +  
Sbjct: 72  LATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQK 131

Query: 151 -DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVT 208
              +    +    L G+T+G+IG G IG A AR+    F M +++ +   A  L E +V 
Sbjct: 132 SPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARI-ARAFGMKVLFAERKGAPPLREGYV- 189

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                               S+DE+L ++DVISLH  L   T +LIN E LA MK  AIL
Sbjct: 190 --------------------SLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAIL 229

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIVVPHIASAS 325
           +N +RG ++DE AL + L    +   GLDV   EP  +     L    N I+ PHIA AS
Sbjct: 230 INTARGGLVDEQALADALNSGKIAGAGLDVLSQEP-PRADNPLLKAAPNLIITPHIAWAS 288

Query: 326 KWTREGMATLAALNV 340
           +  R+ +  +   N+
Sbjct: 289 REARQRLMDILVDNI 303

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  180 bits (460), Expect = 5e-54
 Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 21/233 (9%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  NVDV AA + GI V NTPG   E  AE    L LA  R I  A   ++ G +     
Sbjct: 77  GPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYY 136

Query: 156 NL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           N    G  L+G+TVG++G G IG   A+ + + F   ++ YD         +V    + +
Sbjct: 137 NYDGYGPELRGKTVGIVGFGAIGRRVAKRL-KAFGAEVLVYD--------PYVDP--EKI 185

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           +A+G + V      S++E+L+ +DV+SLH  L   T  +I  E  A MK  A  +N +R 
Sbjct: 186 EADGVKKV------SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARA 239

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASAS 325
            ++DE AL+E L++  +    LDVF +EP +     L ++ N  + PHIA A+
Sbjct: 240 GLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGAT 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  180 bits (459), Expect = 1e-53
 Identities = 102/287 (35%), Positives = 151/287 (52%), Gaps = 26/287 (9%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGK--AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTE 121
           +G++G      GE + AAL     K  A S ++VGY+N DV+A     I + +TP VLTE
Sbjct: 47  EGLLGS-----GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTE 101

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           T A+   +L L+ ARR+VE  E ++AG +   +   + G  +  +T+G++G GRIG A A
Sbjct: 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALA 161

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           +    GF M ++Y         E+   A                R   +D +L+E+D + 
Sbjct: 162 QRAHFGFNMPILYNARRHHKEAEERFNA----------------RYCDLDTLLQESDFVC 205

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +   L   T+HL   E+ A MK  AI +N  RGPV+DE AL+  L++  +   GLDVFE 
Sbjct: 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQ 265

Query: 302 EPYMK--PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           EP     P LS + N + VPHI SA+  TR  MA  A  N++  ++G
Sbjct: 266 EPLSVDSPLLS-LPNVVAVPHIGSATHETRYNMAACAVDNLIDALQG 311

Length = 323

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  185 bits (472), Expect = 1e-53
 Identities = 122/370 (32%), Positives = 185/370 (50%), Gaps = 67/370 (18%)

Query: 17  RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLT 71
           +V+   P+ P    I++L +    V++    +T LS E+++ +I D  D +I     ++T
Sbjct: 1   KVLIADPISPDG--IDILEDVGVEVDV----QTGLSREELLEIIPDY-DALIVRSATKVT 53

Query: 72  EDWGETLFAALS------RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAE 125
           E+    + AA        RAG        VG +N+D+ AA   GI V N P   T + AE
Sbjct: 54  EE----VIAAAPKLKVIGRAG--------VGVDNIDIEAATARGILVVNAPTGNTISAAE 101

Query: 126 LAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV 185
            A ++ LAAAR I +AD  ++ G    W    F+G  L G+T+GVIG GRIGS  A+   
Sbjct: 102 HALAMLLAAARNIPQADASLKEG---EWDRKAFMGTELYGKTLGVIGLGRIGSIVAKR-A 157

Query: 186 EGFKMNLIYYDLY----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           + F M ++ YD Y    +A +L                     +    +DE+L  AD I+
Sbjct: 158 KAFGMKVLAYDPYISPERAEQL-------------------GVELVDDLDELLARADFIT 198

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +H  L   T  LI  E LA MKK  I+VNC+RG +IDE AL E L++  +    LDVFE 
Sbjct: 199 VHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEK 258

Query: 302 EPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN------- 354
           EP     L ++ N I  PH+ ++++  +E +AT  A  VL  +KG P+    N       
Sbjct: 259 EPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318

Query: 355 ---QVEPFLN 361
              +++P+L+
Sbjct: 319 VMEKLKPYLD 328

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  178 bits (453), Expect = 6e-53
 Identities = 114/339 (33%), Positives = 159/339 (46%), Gaps = 32/339 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +VV T  +     + LL +  C V      +  LS E+++    D  DG++  + +    
Sbjct: 3   KVVITHKVH-PEVLELL-KPHCEVISNQTDEP-LSREELLRRCKD-ADGLMAFMPDRIDA 58

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
               A  R   K  +    GY+N DV A    GI V   P +LTE TAEL   L +   R
Sbjct: 59  DFLDACPRL--KIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
            I+  D F+R+G + GW P  + G  L G+TVG++G G +G A AR +  GF   L+YYD
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLS-GFGATLLYYD 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                 L++   A  Q L           R   +DE+L  +D + L   L   T HLIN 
Sbjct: 175 ---PHPLDQ---AEEQALNL---------RRVELDELLESSDFLVLALPLTPDTLHLINA 219

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP--------G 308
           E LA MK  A+LVN  RG V+DE A+ E LK   +     DVFE E + +P         
Sbjct: 220 EALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQE 279

Query: 309 LSEMK-NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           L +     +  PHI SA    R  +   AALN+L  ++G
Sbjct: 280 LLDQHDRTVFTPHIGSAVDEVRLEIELEAALNILQALQG 318

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  172 bits (439), Expect = 6e-51
 Identities = 93/260 (35%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD+ A  + GI V N  G  TE  AEL   L++   R IV  D  +RAG      
Sbjct: 78  TGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAG----GT 133

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
               +G  L G+TVG++G G IG   AR+  + F   ++ Y      R EK      +  
Sbjct: 134 KAGLIGRELAGKTVGIVGTGAIGLRVARL-FKAFGCKVLAYS-----RSEK------EEA 181

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           KA G   + +    S+DE+L E+D++SLH  L+  T  LI KE+LA MK+ AIL+N +RG
Sbjct: 182 KALG---IEYV---SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARG 235

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGM 332
           PV+D  AL + L +  +   G+DVF+ EP +     L    N I+ PH+A A   T E M
Sbjct: 236 PVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFA---TEEAM 292

Query: 333 ATLAAL---NVLGKIKGYPI 349
              A +   N+   + G P 
Sbjct: 293 EKRAEIVFDNIEAWLAGKPQ 312

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  169 bits (431), Expect = 2e-49
 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 21/207 (10%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G+NNVD+ AA + GI V   P       AE A +L LA  R+I  A   +R G +   L 
Sbjct: 78  GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFS--LD 135

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
            L +G  L G+TVGVIG G+IG A+AR++  GF   ++ YD Y    L K    Y     
Sbjct: 136 GL-LGFDLHGKTVGVIGTGKIGQAFARILK-GFGCRVLAYDPYPNPELAKLGVEYV---- 189

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
                         +DE+L E+D+ISLH  L   T+HLIN E +A MK   +L+N SRG 
Sbjct: 190 -------------DLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGG 236

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE 302
           +ID  AL+E LK   +  +GLDV+E+E
Sbjct: 237 LIDTKALIEALKSGKIGGLGLDVYEEE 263

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  168 bits (427), Expect = 5e-49
 Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 53/255 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE------FMRAG 148
            G++++D+ A  + GIAV N P     T AE A +L LA +R++ EA E      F +AG
Sbjct: 72  TGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAG 131

Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           L          G  L G+T+GV+G GRIG   AR+   GF M ++ YD+      E+   
Sbjct: 132 L---------RGFELAGKTLGVVGTGRIGRRVARIAR-GFGMKVLAYDVVPD---EELAE 178

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
             G              R  S++E+L+E+D+ISLH      T+HLIN+E  A MK  A+L
Sbjct: 179 RLGF-------------RYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVL 225

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-------------------- 308
           +N +RG V+D  ALV  LK+  +   GLDV E E  ++                      
Sbjct: 226 INTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADH 285

Query: 309 -LSEMKNAIVVPHIA 322
            L    N I+ PH+A
Sbjct: 286 ALLRKPNVIITPHVA 300

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  162 bits (413), Expect = 4e-47
 Identities = 90/260 (34%), Positives = 126/260 (48%), Gaps = 23/260 (8%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +   ++D+ AA + GI V  T G     TAEL  +L LA AR + E D  +RA
Sbjct: 71  KLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALARNLPEEDAALRA 129

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G   GW   L  G  L G+T+G++G GRIG+  AR+  + F M                V
Sbjct: 130 G---GWQTTL--GTGLAGKTLGIVGLGRIGARVARIG-QAFGMR---------------V 168

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A+   L A        + A S +E+   +DV+SLH VL   T  L+  E LA MK  A+
Sbjct: 169 IAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTAL 228

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAIVVPHIASASK 326
           LVN SRGP++DE AL+  L+   +    LDVF+ EP      L  + N ++ PHI   ++
Sbjct: 229 LVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTE 288

Query: 327 WTREGMATLAALNVLGKIKG 346
              EG    A  N+   + G
Sbjct: 289 EAYEGFYGQAVENIAAWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  162 bits (413), Expect = 4e-47
 Identities = 89/250 (35%), Positives = 123/250 (49%), Gaps = 34/250 (13%)

Query: 81  ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
           A++RAG         G NN+DV+AA+K GI V NTPG      AEL  ++ LA +R I++
Sbjct: 53  AIARAG--------AGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQ 104

Query: 141 ADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           A +++  G  D            FVG  L+G+T+GVIG G IG   A        M +I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANA-ALALGMKVIG 163

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y +      ++   Q             R +S++E+L  AD I+LH  L   T  LI
Sbjct: 164 YDPYLSVEAAWKLSVEVQ-------------RVTSLEELLATADYITLHVPLTDETRGLI 210

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N E LA MK  AIL+N +RG ++DE AL+E L +  +     D  E        L  + N
Sbjct: 211 NAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA-----LLGHLPN 265

Query: 315 AIVVPHI-AS 323
            I  PH+ AS
Sbjct: 266 VIATPHLGAS 275

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  159 bits (405), Expect = 9e-46
 Identities = 91/298 (30%), Positives = 134/298 (44%), Gaps = 49/298 (16%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVN 103
           T  K  L++E+     G     ++G         L   L  AG K  S  ++GY+++D++
Sbjct: 28  TLTKEPLTLENAHLAEGYDGISILG--KSKISAELLEKLKEAGVKYISTRSIGYDHIDLD 85

Query: 104 AANKYGIAVGNTP----GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           AA + GI V N       V     A+    L L A R+  +     RA + D  L  L  
Sbjct: 86  AAKELGIKVSNVTYSPNSV-----ADYTVMLMLMALRKYKQI--MKRAEVNDYSLGGL-Q 137

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+  TVGVIG GRIG A  + +  GF   ++ YD Y    ++K+   Y         
Sbjct: 138 GRELRNLTVGVIGTGRIGQAVIKNL-SGFGCKILAYDPYPNEEVKKYAE-Y--------- 186

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
                     +D + +E+D+I+LH  L + TYHLINKE +A MK   I++N +RG +ID 
Sbjct: 187 --------VDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDT 238

Query: 280 VALVEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIA 322
            AL+E L+   +    LDV E E                 +   L    N I+ PH+A
Sbjct: 239 EALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI-LRSFPNVILTPHMA 295

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  155 bits (393), Expect = 4e-44
 Identities = 83/264 (31%), Positives = 123/264 (46%), Gaps = 28/264 (10%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G +++ +    + G+ V N  G  +   AE A +L LA A+RIVE D  +R G++ G
Sbjct: 67  PSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHG 124

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
                     L+G+TVG++G G IG   AR++ + F M                V    +
Sbjct: 125 RAGEEPESKELRGKTVGILGYGHIGREIARLL-KAFGMR---------------VIGVSR 168

Query: 213 FLKANGEQPVTWKRASSM-DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             K   ++   +    S  DE L +ADV+ +   L K T  LI    LA MK  AILVN 
Sbjct: 169 SPKE--DEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNV 226

Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF----EDEPYMKP---GLSEMKNAIVVPHIASA 324
            RGPV+DE AL E LK+ P+    +DV+         + P      E+ N I+ PH A  
Sbjct: 227 GRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGW 286

Query: 325 SKWTREGMATLAALNVLGKIKGYP 348
           ++ T       AA N+   ++G P
Sbjct: 287 TEETFRRRIDEAAENIRRYLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  146 bits (370), Expect = 1e-40
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 24/231 (10%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
           GI V +      E  AE   +  L A RRI       RAG  D   P    G  L G+TV
Sbjct: 95  GILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAG-RDWGWPTRRGGRGLYGRTV 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A   + +  F + ++ YD         ++ A      A G          
Sbjct: 154 GIVGFGRIGRAVVEL-LRPFGLRVLVYD--------PYLPA--AEAAALGV------ELV 196

Query: 229 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           S+DE+L  +DV+SLH P+  +T   +I+   LA M+  A  +N +RG ++DE AL+  L+
Sbjct: 197 SLDELLARSDVVSLHAPLTPETR-GMIDARLLALMRDGATFINTARGALVDEAALLAELR 255

Query: 288 QNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLA 336
                R  LDV + EP + P   L  + N ++ PHIA ++   R  +   A
Sbjct: 256 SG-RLRAALDVTDPEP-LPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYA 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  143 bits (363), Expect = 8e-40
 Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 34/258 (13%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            A G NNVD+  A K GIAV N  G  TE+ A+   ++ L+   RI   D ++++G Y  
Sbjct: 70  TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSE 129

Query: 153 WLPNLFVG-----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
               +F         +KG+  G+IG G IG   A++  + F   ++YY      + E++ 
Sbjct: 130 --SPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI-AQAFGAKVVYYSTSGKNKNEEY- 185

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                                S++E+L+ +D+IS+H  L++ T +LI  + L  +K  AI
Sbjct: 186 ------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNA---IVVPHIA 322
           L+N  RG +++E  L + L +  +   GLDV E EP  K  P LS +KN    ++ PHIA
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLS-IKNKEKLLITPHIA 285

Query: 323 SASKWTREGMATLAALNV 340
            ASK  R+ +      N+
Sbjct: 286 WASKEARKTLIEKVKENI 303

Length = 311

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  140 bits (354), Expect = 2e-38
 Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 29/233 (12%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P   T + AEL     +  ARR+ + +     G    W 
Sbjct: 73  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---IWN 129

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
            +    + ++G+T+G+IG G IGS  + +  E   M +I+YD+  A +L       G   
Sbjct: 130 KSATGSHEVRGKTLGIIGYGHIGSQLSVL-AEALGMRVIFYDI--AEKL-----PLG--- 178

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                     ++ SS++E+L EAD ++LH     +T ++I  E +A MKK AIL+N SRG
Sbjct: 179 --------NARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            V+D  AL E L+   +    +DVF        EP+  P L  + N I+ PHI
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSP-LQGLPNVILTPHI 282

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  136 bits (345), Expect = 7e-37
 Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 48/232 (20%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAE-LAASLSLAAARRIVEADEFMRAGLYDGWL 154
           G +++D +   + GI   N PG    + AE + ++L + A R+                 
Sbjct: 67  GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQ----------------- 109

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  LKG+TVG++G G +GS  AR  +E   MN++  D  +A              
Sbjct: 110 -----GFSLKGKTVGIVGVGNVGSRLARR-LEALGMNVLLCDPPRAEAEGDPGFV----- 158

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVN 270
                         S++E+L EAD+I+LH  L +     TYHL++++ LA +K   IL+N
Sbjct: 159 --------------SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILIN 204

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
            SRG VID  AL+  L++    RV LDV+E+EP +   L + K  I  PHIA
Sbjct: 205 ASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLELLD-KVDIATPHIA 255

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  128 bits (325), Expect = 3e-34
 Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 28/256 (10%)

Query: 50  LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           L+ E++    G   D VI +      +         G K      VG+N++D+ AA + G
Sbjct: 34  LNDENVHLAKG--HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELG 91

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQT 167
             +   P       AELA +L++  +R             +  D   P +F    ++  T
Sbjct: 92  FKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVD---PFMF-SKEIRNST 147

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG+IG GRIG   A++  +G    +I YD+Y +   +  VT                   
Sbjct: 148 VGIIGTGRIGLTAAKLF-KGLGAKVIGYDIYPSDAAKDVVTFV----------------- 189

Query: 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            S+DE+L+++D+ISLH P +      LINKE ++ MK  AIL+N +RG + DE A++E L
Sbjct: 190 -SLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEAL 248

Query: 287 KQNPMFRVGLDVFEDE 302
           +   +   G DV  +E
Sbjct: 249 ESGKLAGFGTDVLNNE 264

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  125 bits (317), Expect = 2e-32
 Identities = 93/288 (32%), Positives = 137/288 (47%), Gaps = 46/288 (15%)

Query: 47  KTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAALSR--AGGKAFSNMAVGYNN 99
           K  L  E++I  I D     IG     QLTE+    + AA  +  A G  F    +G N 
Sbjct: 39  KGALDEEELIEAIKDA--HFIGIRSRTQLTEE----VLAAAEKLVAIG-CFC---IGTNQ 88

Query: 100 VDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           VD++AA K GI V N P   T + AEL     +   R I E +     G   GW  +   
Sbjct: 89  VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG---GWNKSAAG 145

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
              ++G+T+G++G G IG+  + ++ E   M + +YD+    +L       G     N  
Sbjct: 146 SFEVRGKTLGIVGYGHIGTQLS-VLAESLGMRVYFYDI--EDKL-----PLG-----NAR 192

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
           Q        S++E+L ++DV+SLH     +T ++I  E LA MK  AIL+N SRG V+D 
Sbjct: 193 Q------VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246

Query: 280 VALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            AL + LK   +    +DVF        +P+  P L  + N I+ PHI
Sbjct: 247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESP-LRGLDNVILTPHI 293

Length = 409

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  123 bits (310), Expect = 4e-32
 Identities = 83/268 (30%), Positives = 124/268 (46%), Gaps = 40/268 (14%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GI V N  G  T + A+   +L LA A R+ +  + + AG    W
Sbjct: 74  ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAG---RW 130

Query: 154 -------LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
                  L + F    L+G+T+G++G G +G A AR+  E F M ++             
Sbjct: 131 QQSSQFCLLD-FPIVELEGKTLGLLGHGELGGAVARL-AEAFGMRVLI------------ 176

Query: 207 VTAYGQFLKANGEQPVTWKRASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                      G+ P    R   +  DE+L + D ++LH  L + T HLI    LA MK 
Sbjct: 177 -----------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSE-MKNAIVVPHI 321
            A+L+N +RG ++DE AL + L+   +     DV   EP +   P L+  +   IV PH 
Sbjct: 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS 285

Query: 322 ASASKWTREGMATLAALNVLGKIKGYPI 349
           A  S+  R+ +    A N      G P+
Sbjct: 286 AWGSREARQRIVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  121 bits (304), Expect = 2e-31
 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 41/246 (16%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GIAV N  G  + T  E    +  A    ++    + R  L D W
Sbjct: 73  ATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMG---WYRDQLSDRW 129

Query: 154 LPNLFVGNL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                             ++G T+GV G G +G+   R+  +   M ++Y +   A+   
Sbjct: 130 ATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRL-AQALGMKVLYAEHKGASVCR 185

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
           +  T +                    +EVL++AD+++LH  L +TT +LIN E LA MK 
Sbjct: 186 EGYTPF--------------------EEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNAIVVP 319
            A L+N  RGP++DE AL++ L+   +    LDV   EP  K          + N ++ P
Sbjct: 226 TAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITP 285

Query: 320 HIASAS 325
           HIA AS
Sbjct: 286 HIAWAS 291

Length = 314

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score =  118 bits (298), Expect = 2e-30
 Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 35/274 (12%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETT 123
           DG+         E ++  L+  G K  +  + G++  D+  A KY + + N P    E+ 
Sbjct: 47  DGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESI 106

Query: 124 AELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
           AE   + ++   R   +    +R   +D  W P + +   +K   V VIG GRIG A A+
Sbjct: 107 AEFTVTQAINLVRHFNQIQTKVR--EHDFRWEPPI-LSRSIKDLKVAVIGTGRIGLAVAK 163

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +G+  +++ YD +   +   +V                     +++E +  AD+++L
Sbjct: 164 IFAKGYGSDVVAYDPFPNAKAATYVD-----------------YKDTIEEAVEGADIVTL 206

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H    K  ++L N +     KK A+ VNC+RG ++D  AL++ L    +    LD +E E
Sbjct: 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFE 266

Query: 303 PYMKPG--------------LSEMKNAIVVPHIA 322
             + P               L   ++ I+ PHIA
Sbjct: 267 RPLFPSDQRGQTINDPLLESLINREDVILTPHIA 300

Length = 332

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  117 bits (295), Expect = 4e-30
 Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 36/245 (14%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  N+D+  A + GI + N P    +   E A  + LA   ++  AD+ +R G+   W  
Sbjct: 72  GLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI---WDR 128

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
               G  L G+TVG+IG G +G A+A+ +  GF   +I YD Y+             F  
Sbjct: 129 EGNRGVELMGKTVGIIGYGNMGKAFAKRL-SGFGCKVIAYDKYK------------NFGD 175

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
           A  EQ        S++ + +EAD++SLH  L   T  ++NKE +++ KK    +N +RG 
Sbjct: 176 AYAEQ-------VSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPG----LSEMKNAIVVPHIASAS 325
           V+    LV+ LK   +    LDV E E       + +P     L +    I+ PHIA   
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAG-- 286

Query: 326 KWTRE 330
            WT E
Sbjct: 287 -WTFE 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  117 bits (296), Expect = 4e-30
 Identities = 71/258 (27%), Positives = 104/258 (40%), Gaps = 39/258 (15%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + +      +  + + N  G+     AE      LA AR++              
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR--- 122

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-- 210
           W     V   L G+TV ++G G IG   AR   + F M                V     
Sbjct: 123 WQRRGPVR-ELAGKTVLIVGLGDIGREIARRA-KAFGMR---------------VIGVRR 165

Query: 211 -GQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAIL 268
            G+      ++  T      +DE+L EAD V++  P L   T  L N ER A MK  A+L
Sbjct: 166 SGRPAPPVVDEVYT---PDELDELLPEADYVVNALP-LTPETRGLFNAERFAAMKPGAVL 221

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIA 322
           +N  RG V+DE AL+E L+   +    LDVFE+EP     L        + N I+ PHI+
Sbjct: 222 INVGRGSVVDEDALIEALESGRIAGAALDVFEEEP-----LPADSPLWDLPNVIITPHIS 276

Query: 323 SASKWTREGMATLAALNV 340
             S    E +  +   N+
Sbjct: 277 GDSPSYPERVVEIFLENL 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score =  112 bits (281), Expect = 4e-28
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 44/300 (14%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE---TLFAALSRAGGKAFSNMAVG 96
           VE+ T K+ +LS   +     D+     G  T  +G+    ++  L   G K  +    G
Sbjct: 26  VEVTTSKE-LLSSATV-----DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79

Query: 97  YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN 156
           ++  D++ A K+ I + N P    ET AE + S++L   RR  + +  ++A  +      
Sbjct: 80  FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE- 138

Query: 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA 216
             +   +K  TV +IG GRIG+A A++   GF   +  YD Y    L+        FL  
Sbjct: 139 -IMSKPVKNMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNKDLD--------FL-- 186

Query: 217 NGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
                 T+K   S+ E +++AD+ISLH   +K +YHL +K     +KK AILVN +RG V
Sbjct: 187 ------TYK--DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDE-PYM----------KPGLSEM---KNAIVVPHIA 322
           I+   L+  +    +    +D +E+E  Y              L E+   +  +V PHIA
Sbjct: 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIA 298

Length = 330

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  110 bits (276), Expect = 2e-27
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 26/230 (11%)

Query: 114 NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           N  G   ET AE A +L LA  R++       RA  +D       +  LL+G TV ++GA
Sbjct: 78  NAAGAYAETVAEHALALLLAGLRQLPA---RARATTWDPAEE-DDLVTLLRGSTVAIVGA 133

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           G IG A   ++   F   +I             V   G+     G        A  +DEV
Sbjct: 134 GGIGRALIPLLA-PFGAKVIA------------VNRSGR--PVEGADETV--PADRLDEV 176

Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
             +AD + L   L   T HL++   LA MK  A LVN +RGP++D  ALV+ L+   +  
Sbjct: 177 WPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAG 236

Query: 294 VGLDVFEDEPYMKPG---LSEMKNAIVVPHIASASKWTREGMATLAALNV 340
             LDV + EP   P    L  + NA++ PH+A+  +  R  +A   A NV
Sbjct: 237 AALDVTDPEPL--PDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENV 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  105 bits (264), Expect = 1e-25
 Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 46/242 (19%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + + +    K GI + N  G+ +   AE      L   + + +A +  +      
Sbjct: 67  YSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKK--- 123

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI----------YYDLYQATR 202
           W  +  +  L  G+T+  +G G IG   A+ + + F M +I          Y+D      
Sbjct: 124 WKMDSSLLEL-YGKTILFLGTGSIGQEIAKRL-KAFGMKVIGVNTSGRDVEYFD------ 175

Query: 203 LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLAT 261
            + +            E          +DEVL+EAD V+++ P L + T+HL ++     
Sbjct: 176 -KCY---------PLEE----------LDEVLKEADIVVNVLP-LTEETHHLFDEAFFEQ 214

Query: 262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVP 319
           MKK A+ +N  RGP +DE AL+E LK   +    LDVFE+EP  K  P L ++ N ++ P
Sbjct: 215 MKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSP-LWDLDNVLITP 273

Query: 320 HI 321
           HI
Sbjct: 274 HI 275

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score =  106 bits (266), Expect = 1e-25
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L  +T GV+GAG +G    R++  G    ++  D  +           G F+        
Sbjct: 114 LAERTYGVVGAGHVGGRLVRVL-RGLGWKVLVCDPPRQEAEGD-----GDFV-------- 159

Query: 223 TWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVID 278
                 S++ +L E DVISLH  L K     T HL+++  LA+++  A L+N SRG V+D
Sbjct: 160 ------SLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213

Query: 279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
             AL E L         LDV+E EP +   L++    I  PHIA  S
Sbjct: 214 NQALREALLSGEDLDAVLDVWEGEPQIDLELAD-LCTIATPHIAGYS 259

Length = 381

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  103 bits (259), Expect = 7e-25
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGLYD 151
           VG   VDV+AA K+GI V   P   T    + AE+A  L L   R+  E    ++A    
Sbjct: 91  VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150

Query: 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR---LEKFVT 208
              P   +G+ L G+TV ++G G IG   A+ +   F + L+      ATR     +   
Sbjct: 151 E--P---IGDTLFGKTVFILGYGAIGIELAKRL-RPFGVKLL------ATRRSWTSEPED 198

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                     +          + E   EAD++ L   L K T  ++N E L++MKK A+L
Sbjct: 199 GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALL 258

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           VN +RG ++D  A++  L+   +  + +DV   EP+  P   + +  N I+ PH+A
Sbjct: 259 VNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF-DPDDPILKHPNVIITPHVA 313

Length = 347

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  101 bits (253), Expect = 5e-24
 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AAN  GI V    G    + AE    + L   R  V   E    G   GW 
Sbjct: 93  IGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEG---GWN 149

Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     L+G+TVG +GAGRIG    R + + F ++L+YYD ++             
Sbjct: 150 VADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL-KPFDVHLLYYDRHR------------- 195

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L    E+ +   R + +++++ + DV++++  L   T  L NKE L+ MKK A LVN +
Sbjct: 196 -LPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTA 254

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+ E L+   +     DV+  +P  K  P    M N  + PHI+  +
Sbjct: 255 RGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHP-WRTMPNNAMTPHISGTT 308

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  100 bits (250), Expect = 2e-23
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 35/241 (14%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA+++GI V    G  + + AE    + LA  R    +      G   GW 
Sbjct: 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG---GW- 178

Query: 155 PNLF-VGNL---LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            N+    +    L+G TVG++GAGRIG A  R + + F + L Y D ++           
Sbjct: 179 -NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPFDVKLHYTDRHR----------- 225

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              L    EQ +      S D ++   DV+++H  L   T HL + + L+ MK+ + LVN
Sbjct: 226 ---LPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIASA 324
            +RG ++D  A+V  L+   +     DV+       D P+       M    + PHI+  
Sbjct: 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRT-----MPRNGMTPHISGT 337

Query: 325 S 325
           +
Sbjct: 338 T 338

Length = 385

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 96.1 bits (240), Expect = 2e-22
 Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQT 167
           G+ + N  GV   +TAELA +L LA+ R +         G ++    P+L        + 
Sbjct: 81  GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSL------ADRR 134

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTW 224
           V ++G G IG A  R                   RL  F   VT   +  +  GEQ    
Sbjct: 135 VLIVGYGSIGRAIER-------------------RLAPFEVRVTRVARTARP-GEQVHGI 174

Query: 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
                +  +L EADV+ L   L   T  L++ E LA M   A+LVN +RGPV+D  ALV 
Sbjct: 175 ---DELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVA 231

Query: 285 HLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAA 337
            L    + R  LDV + EP + PG  L      ++ PH+  A+         L  
Sbjct: 232 ELASGRL-RAALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVR 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 84.2 bits (208), Expect = 3e-18
 Identities = 59/262 (22%), Positives = 121/262 (46%), Gaps = 29/262 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K   +++ G +++DV+   +  + + +  G  + + AE A +L LA A+ I E +  M+ 
Sbjct: 51  KMIQSLSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKN 109

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G +    P      LL  +++G++G G IG   A ++ + F MN+  Y     TR     
Sbjct: 110 GNFKQ-SPT----KLLYNKSLGILGYGGIGRRVA-LLAKAFGMNIYAY-----TR----- 153

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
           +     + +   +P         +++++++D + +   L   T  +IN + L+  +K   
Sbjct: 154 SYVNDGISSIYMEP---------EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLA 204

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA-SK 326
           ++N +R  V+D+  ++  L+ +       DV+ +EP +    +   N I+ PH+A   S 
Sbjct: 205 IINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE--TNPDNVILSPHVAGGMSG 262

Query: 327 WTREGMATLAALNVLGKIKGYP 348
              +    LA  N+    +G P
Sbjct: 263 EIMQPAVALAFENIKNFFEGKP 284

Length = 303

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 41/241 (17%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI------VEADEFMRAG 148
           +G +++D+ AA   G+ V    G    + AE      L   R        V + E+  AG
Sbjct: 130 IGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189

Query: 149 L----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRL 203
           +    YD           L+G+TVG +GAGRIG    + + + F  NL+Y+D L     L
Sbjct: 190 IAYRAYD-----------LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKMDPEL 237

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK   A               K    +D +L + DV+ ++  L + T  + NKER+A MK
Sbjct: 238 EKETGA---------------KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMK 282

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHI 321
           K  ++VN +RG ++D  A+ +      +   G DV+  +P  K  P    M N  + PHI
Sbjct: 283 KGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY-MPNHAMTPHI 341

Query: 322 A 322
           +
Sbjct: 342 S 342

Length = 386

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 75.2 bits (186), Expect = 3e-15
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 37/215 (17%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           L +  AE   +  L   R +       R G+   W P          + VGV+G G +G+
Sbjct: 91  LAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV---WKPLPQR--PAAERRVGVLGLGELGA 145

Query: 179 AYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237
           A AR +   GF                  V+ + +  K + E    +     +D  L + 
Sbjct: 146 AVARRLAALGFP-----------------VSGWSRSPK-DIEGVTCFHGEEGLDAFLAQT 187

Query: 238 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           D+ + L P+  +T   ++N E LA + + A L+N  RGP + E  L+  L    +    L
Sbjct: 188 DILVCLLPLTPETR-GILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVL 246

Query: 297 DVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
           DVFE EP     L             V PHIA+ +
Sbjct: 247 DVFEQEP-----LPADHPLWRHPRVTVTPHIAAIT 276

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 75.7 bits (186), Expect = 5e-15
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L  +TVG++G G +G      + E   +  +  D  +A R ++     G F      
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARL-EALGIKTLLCDPPRADRGDE-----GDF------ 158

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    S+DE+++EAD+++ H  L K     T HL +++ + ++K  AIL+N  RG 
Sbjct: 159 --------RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA 210

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 333
           V+D  AL+  L +     V LDV+E EP +   L + K  I  PHIA    +T EG A
Sbjct: 211 VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLK-KVDIGTPHIAG---YTLEGKA 264

Length = 378

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 66/213 (30%), Positives = 89/213 (41%), Gaps = 35/213 (16%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWL-------PNLFVGNLLKGQTVGVIGAG 174
           T AE   +L LAA RR+ E  E  R   + G L       P   +  LL G  V + G G
Sbjct: 94  TVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLL-GARVLIWGFG 152

Query: 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMD 231
            IG   A ++                T L   VT   +   + GE+   PV       + 
Sbjct: 153 SIGQRLAPLL----------------TALGARVTGVAR---SAGERAGFPVV--AEDELP 191

Query: 232 EVLREADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290
           E+L E DV + + P    T  H ++ E LA + K A +VN  RG  +DE ALV  L+   
Sbjct: 192 ELLPETDVLVMILPATPSTA-HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGR 250

Query: 291 MFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIA 322
           +    LDV   EP      L +  N I+ PH A
Sbjct: 251 LGGAALDVTATEPLPASSPLWDAPNLILTPHAA 283

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169
           + +    G+     AE      L  +   ++  E  +   +        V + + G+ VG
Sbjct: 79  VPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSV-GKRVG 137

Query: 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGEQPVT 223
           ++G G IG   AR+      M +  Y        E        V   G     +G  P  
Sbjct: 138 ILGYGSIGRQTARLAQ-ALGMEVYAYTRSPRPTPESRKDDGYIVPGTGD---PDGSIPSA 193

Query: 224 W---KRASSMDEVLREA-D--VISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPV 276
           W      +S+ E LR+  D  V+SL P+   T  HL+  E    + K++  + N +RG +
Sbjct: 194 WFSGTDKASLHEFLRQDLDLLVVSL-PLTPATK-HLLGAEEFEILAKRKTFVSNIARGSL 251

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 326
           +D  ALV  L+   +    LDV + EP +     L    N I+ PH++  ++
Sbjct: 252 VDTDALVAALESGQIRGAALDVTDPEP-LPADHPLWSAPNVIITPHVSWQTQ 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 45/246 (18%)

Query: 117 GVLTETTAELAASLSLAAARRI----VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
           GV  E  AE   +  LAAA+R+    V+  E         W         L G T+G++G
Sbjct: 93  GVAAEAIAEFVLAAILAAAKRLPEIWVKGAEQ--------WRRE--PLGSLAGSTLGIVG 142

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG A AR  +    M ++      A R        G+     G +      A+ + E
Sbjct: 143 FGAIGQALARRAL-ALGMRVL------ALRRS------GRPSDVPGVE-----AAADLAE 184

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +   +D + L   L   T HLIN + LA  K    L+N +RG ++D+ AL+E L    + 
Sbjct: 185 LFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRIS 244

Query: 293 RVGLDVFEDEP-------YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 345
              LDV + EP       Y  P +       + PH ++ +   R  +A     N+     
Sbjct: 245 LASLDVTDPEPLPEGHPLYTHPRVR------LSPHTSAIAPDGRRNLADRFLENLARYRA 298

Query: 346 GYPIWG 351
           G P+  
Sbjct: 299 GQPLHD 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAAN-KYGIAVGNTPGVLTETT---AELAASLSLAAA 135
           A + + G +      +G ++ D+  A  + G+      GV        +  A  LS+   
Sbjct: 81  ALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFI 140

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
            R +E  +  R G              + G+TV V+GAG +G   A+M+  G    ++  
Sbjct: 141 ARFLEVQQPGRLGGAPD----------VAGKTVVVVGAGVVGKEAAQMLR-GLGAQVLIT 189

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLI 254
           D+      +               + +  K    ++E L EADVI     +  K    L+
Sbjct: 190 DINVEALEQ--------------LEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILV 235

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +E +  MK  +++VN + G V    AL   L
Sbjct: 236 PEELVEQMKPGSVIVNVAVGAVGCVQALHTQL 267

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 61/257 (23%), Positives = 84/257 (32%), Gaps = 56/257 (21%)

Query: 99  NVDVNAANKYGIAVGNT-----PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           NVD+ AA + GI V         GV+    +EL         R +              W
Sbjct: 85  NVDIAAARENGITVTGIRDYGDEGVVEYVISELI--------RLLHGFGGKQ-------W 129

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                    L G  VG+IG G  G   A  +   F  ++ YY   +    E     Y   
Sbjct: 130 KE---EPRELTGLKVGIIGLGTTGQMIADAL-SFFGADVYYYSRTRKPDAEAKGIRY--- 182

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
                  P        ++E+L+  DVI     L K    L+ +E    +    IL N S 
Sbjct: 183 ------LP--------LNELLKTVDVICTC--LPKNVI-LLGEEEFELLGDGKILFNTSL 225

Query: 274 GPVIDEVALVEHL---KQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
           GP  +  AL + L     N           DE      L    N I     A    WTR+
Sbjct: 226 GPSFEVEALKKWLKASGYNIFDCDTAGALGDEE-----LLRYPNVICTNKSAG---WTRQ 277

Query: 331 GMATLAALNVLGKIKGY 347
               L+   VL  ++ Y
Sbjct: 278 AFERLSQ-KVLANLEEY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT 223
               V +IGAG +G   A++       N++ YD+ +            + ++  G   + 
Sbjct: 161 PPAKVLIIGAGVVGLGAAKIAK-KLGANVLVYDIKEEKL---------KGVETLGGSRLR 210

Query: 224 WKRASSMDEVLREADVI---SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
           + +   +++ L++ D++    L          LI +E +  MK+ A++V+ +
Sbjct: 211 YSQKEELEKELKQTDILINAILVD--GPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
PLN02306	386	hydroxypyruvate reductase	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.97
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.86
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.84
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.83
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.68
PLN02494	477	adenosylhomocysteinase	99.62
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.61
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.49
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.46
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.35
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.34
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.33
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.23
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.23
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.21
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.17
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.17
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.1
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.07
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.04
PLN02256	304	arogenate dehydrogenase	99.04
PLN02712	667	arogenate dehydrogenase	99.02
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.96
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.96
PRK07417	279	arogenate dehydrogenase; Reviewed	98.93
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.92
PRK08655	437	prephenate dehydrogenase; Provisional	98.91
PLN02858	1378	fructose-bisphosphate aldolase	98.9
PRK06545	359	prephenate dehydrogenase; Validated	98.88
PRK08818	370	prephenate dehydrogenase; Provisional	98.88
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.86
PLN02858	1378	fructose-bisphosphate aldolase	98.86
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.86
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.85
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.84
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.83
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.83
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.82
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.82
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.81
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.8
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.8
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.79
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.77
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.72
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.72
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.71
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.71
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.71
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.7
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.7
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.7
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.67
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.67
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.66
PLN02712	667	arogenate dehydrogenase	98.65
PRK05225	487	ketol-acid reductoisomerase; Validated	98.63
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.63
PRK08507	275	prephenate dehydrogenase; Validated	98.61
PLN02688	266	pyrroline-5-carboxylate reductase	98.59
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.59
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.58
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.56
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.55
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.55
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.53
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.52
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.49
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.49
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.48
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.47
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.47
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.46
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.45
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.45
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.43
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.43
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.43
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.42
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.39
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.39
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.38
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.37
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.37
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.37
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.36
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.35
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.32
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.31
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.29
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.27
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.27
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.26
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.25
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.25
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.24
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.23
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.21
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	98.19
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.19
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.18
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.18
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.17
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.16
PRK07680	273	late competence protein ComER; Validated	98.16
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.15
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.15
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.14
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.12
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.09
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.09
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.07
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.06
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.05
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.0
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.0
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.0
PLN00203	519	glutamyl-tRNA reductase	97.99
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.98
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.98
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.94
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.93
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK06141	314	ornithine cyclodeaminase; Validated	97.89
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.88
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.88
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.88
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.88
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.87
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.87
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.85
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.85
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.85
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.84
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.82
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.82
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.81
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.77
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.77
PRK07340	304	ornithine cyclodeaminase; Validated	97.73
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.73
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.72
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.71
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.69
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.69
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.68
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.68
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.67
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.66
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.64
PRK14982	340	acyl-ACP reductase; Provisional	97.6
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.6
PRK08618	325	ornithine cyclodeaminase; Validated	97.59
PRK06823	315	ornithine cyclodeaminase; Validated	97.58
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.58
PRK06046	326	alanine dehydrogenase; Validated	97.57
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.51
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.49
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.48
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.44
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.44
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.43
PRK07589	346	ornithine cyclodeaminase; Validated	97.41
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.41
PRK06407	301	ornithine cyclodeaminase; Provisional	97.38
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.35
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.35
PRK08291	330	ectoine utilization protein EutC; Validated	97.33
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.32
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.31
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.31
PRK06199	379	ornithine cyclodeaminase; Validated	97.3
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.29
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.28
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.27
PTZ00117	319	malate dehydrogenase; Provisional	97.25
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.24
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.24
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.18
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.16
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.14
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.14
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.13
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.13
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.11
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.08
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.05
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.05
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.05
PRK09414	445	glutamate dehydrogenase; Provisional	96.99
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.97
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.97
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.96
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.83
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.79
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.78
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.74
PRK06223	307	malate dehydrogenase; Reviewed	96.73
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.7
PLN02477	410	glutamate dehydrogenase	96.7
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.7
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.63
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.63
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.63
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.59
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.58
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.57
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.52
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.52
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.45
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.44
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.42
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.42
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.34
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.33
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.33
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.32
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.29
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.27
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.23
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.21
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.21
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.19
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.18
PRK14031	444	glutamate dehydrogenase; Provisional	96.18
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.18
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.16
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.16
PRK14030	445	glutamate dehydrogenase; Provisional	96.16
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.14
PRK11579	346	putative oxidoreductase; Provisional	96.0
PRK06444	197	prephenate dehydrogenase; Provisional	95.96
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.95
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.94
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.93
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.93
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.93
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.89
PRK01713	334	ornithine carbamoyltransferase; Provisional	95.88
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.85
PRK00779	304	ornithine carbamoyltransferase; Provisional	95.85
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.79
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.78
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.76
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.74
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.72
PRK12862	763	malic enzyme; Reviewed	95.69
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.67
PRK10637	457	cysG siroheme synthase; Provisional	95.64
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.63
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.62
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.61
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.6
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.54
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.5
PRK12861	764	malic enzyme; Reviewed	95.48
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.41
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.4
COG5322	351	Predicted dehydrogenase [General function predicti	95.4
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.39
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.39
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.38
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.35
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.33
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.32
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.29
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.28
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.27
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	95.26
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.23
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.2
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.15
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.13
PRK06270	341	homoserine dehydrogenase; Provisional	95.12
PRK09496	453	trkA potassium transporter peripheral membrane com	95.11
PRK09496	453	trkA potassium transporter peripheral membrane com	95.11
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.11
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.08
PRK02102	331	ornithine carbamoyltransferase; Validated	95.05
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.02
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.01
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.01
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.94
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.91
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.91
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.88
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	94.86
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.84
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.81
PLN02527	306	aspartate carbamoyltransferase	94.79
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.78
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.78
PRK10669	558	putative cation:proton antiport protein; Provision	94.78
PLN02342	348	ornithine carbamoyltransferase	94.76
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	94.73
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.73
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.73
PRK08192	338	aspartate carbamoyltransferase; Provisional	94.71
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.65
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.63
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	94.59
PRK06153	393	hypothetical protein; Provisional	94.53
PLN02602	350	lactate dehydrogenase	94.53
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.5
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.46
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.46
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.37
PRK14804	311	ornithine carbamoyltransferase; Provisional	94.24
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.24
PRK04284	332	ornithine carbamoyltransferase; Provisional	94.23
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.23
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.23
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.2
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.19
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.18
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.18
PRK05086	312	malate dehydrogenase; Provisional	94.14
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	94.13
COG2344	211	AT-rich DNA-binding protein [General function pred	94.04
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.96
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	93.94
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.93
COG0673	342	MviM Predicted dehydrogenases and related proteins	93.92
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.87
PRK07806	248	short chain dehydrogenase; Provisional	93.6
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.59
PRK04148	134	hypothetical protein; Provisional	93.52
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.49
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	93.44
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.38
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.37
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.33
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	93.3
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	93.19
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	93.17
PRK15076	431	alpha-galactosidase; Provisional	93.16
PTZ00325	321	malate dehydrogenase; Provisional	93.11
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.06
PRK12937	245	short chain dehydrogenase; Provisional	93.03
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.98
PLN00106	323	malate dehydrogenase	92.94
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	92.91
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	92.88
PRK06349	426	homoserine dehydrogenase; Provisional	92.84
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	92.77
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	92.74
PLN02948	577	phosphoribosylaminoimidazole carboxylase	92.69
PRK06701	290	short chain dehydrogenase; Provisional	92.69
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.67
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.6
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	92.56
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.55
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.48
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	92.35
PRK10206	344	putative oxidoreductase; Provisional	92.32
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	92.14
PLN02586	360	probable cinnamyl alcohol dehydrogenase	92.13
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	92.13
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	92.06
PRK06128	300	oxidoreductase; Provisional	91.97
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.93
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	91.87
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	91.86
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	91.84
PRK06392	326	homoserine dehydrogenase; Provisional	91.83
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	91.83
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	91.68
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	91.6
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	91.54
PLN02214	342	cinnamoyl-CoA reductase	91.38
PRK07877	722	hypothetical protein; Provisional	91.24
PRK13529	563	malate dehydrogenase; Provisional	91.18
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.17
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.16
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.07
PRK07411	390	hypothetical protein; Validated	91.07
PLN00112	444	malate dehydrogenase (NADP); Provisional	91.07
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	91.06
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.05
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	91.05
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	91.04
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	90.97
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.96
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	90.94
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	90.91
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	90.81
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.8
PRK09189	240	uroporphyrinogen-III synthase; Validated	90.78
PLN03209	576	translocon at the inner envelope of chloroplast su	90.75
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	90.74
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	90.66
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	90.61
PRK07523	255	gluconate 5-dehydrogenase; Provisional	90.48
PRK06172	253	short chain dehydrogenase; Provisional	90.47
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	90.47
PRK10537	393	voltage-gated potassium channel; Provisional	90.45
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	90.41
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.4
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	90.38
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.35
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.33
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	90.18
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	90.12
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	90.12
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	90.08
PLN02427	386	UDP-apiose/xylose synthase	90.02
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	90.0
PRK05866	293	short chain dehydrogenase; Provisional	89.97
PRK08324	681	short chain dehydrogenase; Validated	89.95
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	89.92
PRK07326	237	short chain dehydrogenase; Provisional	89.78
CHL00194	317	ycf39 Ycf39; Provisional	89.77
PTZ00317	559	NADP-dependent malic enzyme; Provisional	89.75
PRK12742	237	oxidoreductase; Provisional	89.71
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	89.71
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	89.64
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	89.63
PRK06114	254	short chain dehydrogenase; Provisional	89.63
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	89.61
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.48
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	89.41
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	89.38
PRK05717	255	oxidoreductase; Validated	89.3
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	89.27
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	89.27
PRK08265	261	short chain dehydrogenase; Provisional	89.23
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	89.23
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	89.22
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.15
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	89.12
PLN02740	381	Alcohol dehydrogenase-like	89.02
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	88.93
PRK05442	326	malate dehydrogenase; Provisional	88.91
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	88.86
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.85
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	88.8
PRK06196	315	oxidoreductase; Provisional	88.74
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	88.71
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.71
PRK07825	273	short chain dehydrogenase; Provisional	88.64
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	88.63
PRK08628	258	short chain dehydrogenase; Provisional	88.51
PRK12828	239	short chain dehydrogenase; Provisional	88.45
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	88.45
PLN03129	581	NADP-dependent malic enzyme; Provisional	88.37
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.35
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	88.24
PRK08862	227	short chain dehydrogenase; Provisional	88.21
PRK08328	231	hypothetical protein; Provisional	88.2
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	88.16
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	87.89
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	87.89
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	87.84
PRK08589	272	short chain dehydrogenase; Validated	87.8
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	87.77
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.76
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	87.75
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	87.73
PRK06194	287	hypothetical protein; Provisional	87.69
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	87.68
PRK12747	252	short chain dehydrogenase; Provisional	87.66
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	87.65
PRK06841	255	short chain dehydrogenase; Provisional	87.64
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	87.61
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	87.58
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	87.57

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.8e-79  Score=614.33  Aligned_cols=385  Identities=92%  Similarity=1.397  Sum_probs=332.6

Q ss_pred             CCCceeEEEeCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHH
Q 016162            1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (394)
Q Consensus         1 ~~~~~~~~~~~~~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~   80 (394)
                      |+|+++++|-||+.|++|+++.+++++...+.|++.+++++.........+++++.+.+.+++|+++++..+.+++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~   80 (386)
T PLN02306          1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS   80 (386)
T ss_pred             CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence            89999999999999999999999876434677877667776433222235788998887545999998877789999999


Q ss_pred             HhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc
Q 016162           81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (394)
Q Consensus        81 ~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g  160 (394)
                      +++++++|+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+....|
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g  160 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG  160 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence            99976679999999999999999999999999999999999999999999999999999999999999998886544567


Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+|+||||||||+|+||+.+|++++++|||+|++|||+.....+.+...|+..+...+.....+....+++|++++||+|
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            89999999999999999999999634999999999998753322211122211111111111122235899999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPH  320 (394)
                      ++|+|+|++|+++||++.|++||+|++|||+|||++|||+||++||++|++.||+||||++||+++++||++|||++|||
T Consensus       241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH  320 (386)
T PLN02306        241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH  320 (386)
T ss_pred             EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999999999999999999998788999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhh
Q 016162          321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFK  385 (394)
Q Consensus       321 ia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (394)
                      +||.|.++++++...+++|+.+|++|+++.|.||.++|++.+++.++..+|+|.+++.+|.-+++
T Consensus       321 iag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (386)
T PLN02306        321 IASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGLPVSK  385 (386)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhCCcccC
Confidence            99999999999999999999999999999999985568988888999999999999999876554

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-74  Score=544.57  Aligned_cols=340  Identities=32%  Similarity=0.448  Sum_probs=309.7

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccC
Q 016162           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (394)
Q Consensus        17 ~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G   96 (394)
                      +||+++++... .++.|++.|.++++..    ..+.||+.+.+++ +|++++++.+++++++|++... ++|+|+++|+|
T Consensus         8 ~il~~e~~~~~-~~~~l~~~g~~v~~~~----~~~~eel~~~i~~-~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G   80 (406)
T KOG0068|consen    8 KILVAESLDQA-CIEILKDNGYQVEFKK----NLSLEELIEKIKD-CDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG   80 (406)
T ss_pred             eEEEecccchH-HHHHHHhcCceEEEec----cCCHHHHHHHhcc-CCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence            69999999874 6899999998887543    3478899999985 9999999999999999995332 45999999999


Q ss_pred             ccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH
Q 016162           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (394)
Q Consensus        97 ~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I  176 (394)
                      +||+|+++|+++||.|.|+|.+|+.++||++++++++++|+++++...+++|+   |.+..+.|.+|+|||+||+|+|+|
T Consensus        81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~---wnr~~~~G~el~GKTLgvlG~GrI  157 (406)
T KOG0068|consen   81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGK---WNRVKYLGWELRGKTLGVLGLGRI  157 (406)
T ss_pred             ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCc---eeecceeeeEEeccEEEEeecccc
Confidence            99999999999999999999999999999999999999999999999999998   667788999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (394)
Q Consensus       177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~  256 (394)
                      |+++|+++ +++||+|++||+.......+          ..|.      ...+++|+++.||||++|+|+||+|.+++|+
T Consensus       158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~gv------q~vsl~Eil~~ADFitlH~PLtP~T~~lin~  220 (406)
T KOG0068|consen  158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFGV------QLVSLEEILPKADFITLHVPLTPSTEKLLND  220 (406)
T ss_pred             hHHHHHHH-HhcCceEEeecCCCchHHHH----------hccc------eeeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence            99999996 89999999999987653221          1121      2469999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC---CCccccCCceEEcCCCCCCcHHHHHHHH
Q 016162          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTREGMA  333 (394)
Q Consensus       257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~---~~~L~~~~nvilTPHia~~t~~~~~~~~  333 (394)
                      +.|++||+|..+||+|||++|||.||++||++|+++|||+|||+.||..   ++.|.++|||++|||+|++|.|++.+++
T Consensus       221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~ia  300 (406)
T KOG0068|consen  221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIA  300 (406)
T ss_pred             HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986   4689999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhcc
Q 016162          334 TLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLS  387 (394)
Q Consensus       334 ~~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (394)
                      ..+++++.+|++| ...++|| . |.+.. +.+++.+||+.+++++|+++.|+.
T Consensus       301 ievaea~~~~~~~-~~~g~Vn-a-~~v~~-~~l~~~~~~~~~a~~l~r~~~~~~  350 (406)
T KOG0068|consen  301 IEVAEAVSDYING-NSAGSVN-A-PEVAL-ESLTELKPNIVLAEKLGRLVPGVL  350 (406)
T ss_pred             HHHHHHHHHHhcc-Cccceec-h-hhhhh-hhhhccCchhHHHHHHhhhhHHHh
Confidence            9999999999999 7788997 4 77765 588999999999999999999984

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=8.5e-72  Score=581.33  Aligned_cols=347  Identities=34%  Similarity=0.481  Sum_probs=309.4

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccC
Q 016162           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (394)
Q Consensus        17 ~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G   96 (394)
                      ||++++++++ ...+.|++.++++...  +  ..+++++.+.+.+ +|++++++.+++++++++++|+|  |+|+++|+|
T Consensus         1 ~vli~~~~~~-~~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G   72 (525)
T TIGR01327         1 KVLIADPISP-DGIDILEDVGVEVDVQ--T--GLSREELLEIIPD-YDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG   72 (525)
T ss_pred             CEEEeCCCCH-HHHHHHHhcCcEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence            4788888876 3567777766666532  1  2367888888874 99999988788999999999988  999999999


Q ss_pred             ccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH
Q 016162           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (394)
Q Consensus        97 ~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I  176 (394)
                      +||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|..   ..+.|.+|+||||||||+|+|
T Consensus        73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~g~~l~gktvgIiG~G~I  149 (525)
T TIGR01327        73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDR---KAFMGTELYGKTLGVIGLGRI  149 (525)
T ss_pred             cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccc---cccCccccCCCEEEEECCCHH
Confidence            99999999999999999999999999999999999999999999999999998643   335678999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (394)
Q Consensus       177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~  256 (394)
                      |+++|+++ ++|||+|++|||+.......          ..+     .....+++|++++||+|++|+|+|++|+++||+
T Consensus       150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~  213 (525)
T TIGR01327       150 GSIVAKRA-KAFGMKVLAYDPYISPERAE----------QLG-----VELVDDLDELLARADFITVHTPLTPETRGLIGA  213 (525)
T ss_pred             HHHHHHHH-HhCCCEEEEECCCCChhHHH----------hcC-----CEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence            99999997 89999999999974322110          011     122358999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHH
Q 016162          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLA  336 (394)
Q Consensus       257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~  336 (394)
                      +.|++||+|++|||+|||++||++||++||++|+++||+||||++||++++|||++|||++|||+|+.|.++++++...+
T Consensus       214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~  293 (525)
T TIGR01327       214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQV  293 (525)
T ss_pred             HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhccccCCCC
Q 016162          337 ALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAASPHR  393 (394)
Q Consensus       337 ~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (394)
                      ++|+.+|++|+++.|.|| . |.++. +.++.++||+.|++++|+++.||....|++
T Consensus       294 ~~ni~~~~~g~~~~~~vn-~-~~~~~-~~~~~~~~~~~la~riG~~a~ql~~~~~~~  347 (525)
T TIGR01327       294 AEQVLDALKGLPVPNAVN-A-PGIDA-DVMEKLKPYLDLAEKLGKLAGQLLDGAVQS  347 (525)
T ss_pred             HHHHHHHHcCCCCCceee-C-CCCCc-hhhhhhhhHHHHHHHHHHHHHHHcCCCceE
Confidence            999999999999999997 4 88866 488899999999999999999998887764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-71  Score=546.01  Aligned_cols=311  Identities=37%  Similarity=0.515  Sum_probs=276.1

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      ++++++++.++.+.. .+.+... .++++...  ...+.+++.+.+.+ +|++++ +.+++++++++.+|+|  |+|++.
T Consensus         2 ~~~~vl~~~~~~~~~-~~~l~~~-~~~~~~~~--~~~~~~~l~~~~~~-~d~~~~-~~~~v~~~~l~~~~~L--k~I~~~   73 (324)
T COG0111           2 MMIKVLVTDPLAPDA-LEELLAA-YDVEVPDG--PDLDEEELLEALAD-ADALIV-SVTPVTEEVLAAAPNL--KAIGRA   73 (324)
T ss_pred             CcceeeccCccCHHH-HHHHHhc-cccccccc--cccchHHHHhhccc-CcEEEE-ecCCCCHHHHhhCCCc--eEEEEc
Confidence            578899999998864 4555444 33333222  23466778888874 999998 7889999999999988  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+||||+++++++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|+   +..+.|.+|+||||||||+
T Consensus        74 g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~---~~~~~g~el~gkTvGIiG~  150 (324)
T COG0111          74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWD---RKAFRGTELAGKTVGIIGL  150 (324)
T ss_pred             cccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcc---ccccccccccCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999965   3556788999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+.+|+++ ++|||+|++|||+.....+.             .  .+.....++++++++||+|++|+|+|++|+||
T Consensus       151 G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~-------------~--~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~  214 (324)
T COG0111         151 GRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG-------------V--DGVVGVDSLDELLAEADILTLHLPLTPETRGL  214 (324)
T ss_pred             CHHHHHHHHHH-HhCCCeEEEECCCCchhhhc-------------c--ccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence            99999999996 89999999999976543211             1  11234578999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHH
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGM  332 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~  332 (394)
                      ||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+||+|.|+++++
T Consensus       215 i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~  294 (324)
T COG0111         215 INAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERV  294 (324)
T ss_pred             cCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987 69999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCC
Q 016162          333 ATLAALNVLGKIKGYPIWG  351 (394)
Q Consensus       333 ~~~~~~ni~~~l~g~~~~~  351 (394)
                      ..++++|+.+|++|+++.|
T Consensus       295 ~~~~~~~i~~~l~g~~~~~  313 (324)
T COG0111         295 AEIVAENIVRYLAGGPVVN  313 (324)
T ss_pred             HHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999776

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.6e-70  Score=539.42  Aligned_cols=317  Identities=33%  Similarity=0.490  Sum_probs=276.4

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      +++||+++++++++ ..+.|++. +++.... .....+.+++.+.+. ++|+++++. .++++++++++|+|  |+|++.
T Consensus         1 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~-~ad~li~~~-~~~~~~~l~~~p~L--k~I~~~   73 (323)
T PRK15409          1 MKPSVILYKALPDD-LLQRLEEH-FTVTQVA-NLSPETVEQHAAAFA-EAEGLLGSG-EKVDAALLEKMPKL--RAASTI   73 (323)
T ss_pred             CCceEEEeCCCCHH-HHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhc-CCeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence            45789999988753 56667653 4554332 112236678888887 499998764 47999999999998  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+||||+++|+++||.|+|+|++++++||||++++||+++|++..+++.+++|.|..+......|.+|+|||+||||+
T Consensus        74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~  153 (323)
T PRK15409         74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM  153 (323)
T ss_pred             ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999864432233578999999999999


Q ss_pred             ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162          174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (394)
Q Consensus       174 G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~  252 (394)
                      |+||+.+|+++ + +|||+|++|||+.......   .       .+     . ...++++++++||+|++|+|+|++|++
T Consensus       154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---~-------~~-----~-~~~~l~ell~~sDvv~lh~plt~~T~~  216 (323)
T PRK15409        154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE---R-------FN-----A-RYCDLDTLLQESDFVCIILPLTDETHH  216 (323)
T ss_pred             cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---h-------cC-----c-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence            99999999996 7 9999999999875332110   0       01     1 235999999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCCCCCCcHHHHHH
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      +||++.|++||||++|||+|||++||++||++||++|+++||+||||++||++ ++|||++|||++|||+||.|.+++.+
T Consensus       217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~  296 (323)
T PRK15409        217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN  296 (323)
T ss_pred             ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999986 46899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 016162          332 MATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +...+++||.+|++|+++.+.||
T Consensus       297 ~~~~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        297 MAACAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999988886

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=5.9e-71  Score=575.13  Aligned_cols=347  Identities=32%  Similarity=0.479  Sum_probs=308.3

Q ss_pred             eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g   94 (394)
                      |||++++++++. ..+.|++. ++++..  .+  ..+++++.+.+.+ +|++++++.+++++++++++|+|  |+|++.|
T Consensus         1 m~ili~~~~~~~-~~~~l~~~~~~~v~~--~~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (526)
T PRK13581          1 MKVLVSDPISPA-GLEILKDAPGVEVDV--KT--GLDKEELLEIIGD-YDALIVRSATKVTAEVLEAAKNL--KVIGRAG   72 (526)
T ss_pred             CeEEEeCCCCHH-HHHHHhccCCeEEEe--CC--CCCHHHHHHHhcC-CCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            468888888763 46777665 455542  22  2367888888874 99999988788999999999988  9999999


Q ss_pred             cCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016162           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (394)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG  174 (394)
                      +|+||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|..   ..+.|.+|+||||||||+|
T Consensus        73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~---~~~~g~~l~gktvgIiG~G  149 (526)
T PRK13581         73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWER---KKFMGVELYGKTLGIIGLG  149 (526)
T ss_pred             cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCc---cCccccccCCCEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999999653   2346789999999999999


Q ss_pred             hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcc
Q 016162          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (394)
Q Consensus       175 ~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li  254 (394)
                      +||+.+|+++ ++|||+|++|||+.......          ..+     +. ..+++|++++||+|++|+|+|++|+++|
T Consensus       150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~ell~~aDiV~l~lP~t~~t~~li  212 (526)
T PRK13581        150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA----------QLG-----VE-LVSLDELLARADFITLHTPLTPETRGLI  212 (526)
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------hcC-----CE-EEcHHHHHhhCCEEEEccCCChHhhcCc
Confidence            9999999997 89999999999975332110          011     12 2389999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 016162          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (394)
Q Consensus       255 ~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~  334 (394)
                      +++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++++|||++|||++|||+|+.|.++++++..
T Consensus       213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  292 (526)
T PRK13581        213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAI  292 (526)
T ss_pred             CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhccccCCCC
Q 016162          335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAASPHR  393 (394)
Q Consensus       335 ~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (394)
                      .+++|+.+|++|+++.|.|| + |.+.+ +.++.++||+.+++++|+++.||..+.|++
T Consensus       293 ~~~~ni~~~~~g~~~~~~vn-~-~~~~~-~~~~~~~~~~~la~riG~~a~ql~~~~~~~  348 (526)
T PRK13581        293 QVAEQVIDALRGGPVPNAVN-L-PSITA-EEAEKLKPYLDLAEKLGSLAAQLADGPIKS  348 (526)
T ss_pred             HHHHHHHHHHcCCCcCceee-C-CCCch-hhhHHhHHHHHHHHHHHHHHHHHcCCCceE
Confidence            99999999999999999997 5 88865 589999999999999999999998887764

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=6e-70  Score=533.60  Aligned_cols=317  Identities=39%  Similarity=0.535  Sum_probs=278.4

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      +|+.++++.+++++ ..+.+.+. +++..........+  ++.+... ++|++++...+.++.++++++|+|  |+|+..
T Consensus         1 mk~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~   73 (324)
T COG1052           1 MKIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTPDT--ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATR   73 (324)
T ss_pred             CCcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCccch--HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEe
Confidence            35668888888874 46666554 67766554322222  5666666 599999988889999999999988  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCC-CCcccccccCCCeEEEEe
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVIG  172 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~-~~~~~g~~l~gktvGIIG  172 (394)
                      |+||||||+++|+++||.|+|+|++++++||||++++||++.|++.++++++|+|.|..|. .....|.+++|||+||||
T Consensus        74 ~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG  153 (324)
T COG1052          74 SAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG  153 (324)
T ss_pred             ccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999987652 333568899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (394)
Q Consensus       173 lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~  252 (394)
                      +|+||+++|+++ ++|||+|++|||++.+..++.               ..+ .+.+++|++++||+|++|||+|++|+|
T Consensus       154 ~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~-~y~~l~ell~~sDii~l~~Plt~~T~h  216 (324)
T COG1052         154 LGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGA-RYVDLDELLAESDIISLHCPLTPETRH  216 (324)
T ss_pred             CCHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCc-eeccHHHHHHhCCEEEEeCCCChHHhh
Confidence            999999999997 799999999999875322210               011 234699999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCc---eEEcCCCCCCcHHH
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKWT  328 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~n---vilTPHia~~t~~~  328 (394)
                      +||++.|++||+|++|||+|||++|||+||++||++|+++|||||||+.||.+ ++||++++|   |++|||+|+.|.++
T Consensus       217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea  296 (324)
T COG1052         217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEA  296 (324)
T ss_pred             hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHH
Confidence            99999999999999999999999999999999999999999999999999985 678887777   99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          329 REGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       329 ~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +.+|...+++|+.+|++|+...+.||
T Consensus       297 ~~~m~~~~~~nl~~~~~g~~~~~~v~  322 (324)
T COG1052         297 RKAMAELALENLEAFFDGGVPPNEVN  322 (324)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999998886

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=4e-68  Score=525.21  Aligned_cols=318  Identities=43%  Similarity=0.648  Sum_probs=278.6

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      +++||+++.++++ ...+.|++. +++.... .....+.+++.+.+.+ +|+++++..+++++++++++|+|  |+|++.
T Consensus         1 ~~~kil~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~   74 (333)
T PRK13243          1 MKPKVFITREIPE-NGIEMLEEH-FEVEVWE-DEREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRL--RIVANY   74 (333)
T ss_pred             CCceEEEECCCCH-HHHHHHhcC-ceEEEec-CCCCCCHHHHHHHhCC-CcEEEEeCCCCCCHHHHhhCCCC--eEEEec
Confidence            4578999888765 345667654 4554332 2223467888888874 99999877678999999999988  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCC----CCCCcccccccCCCeEE
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVG  169 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~----w~~~~~~g~~l~gktvG  169 (394)
                      |+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..    |....+.|.+|+|||||
T Consensus        75 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvg  154 (333)
T PRK13243         75 AVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIG  154 (333)
T ss_pred             CccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999863    22222357899999999


Q ss_pred             EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~  249 (394)
                      |||+|+||+.+|+++ ++|||+|++|||+.......   .       .+     . ...++++++++||+|++|+|+|++
T Consensus       155 IiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~-------~~-----~-~~~~l~ell~~aDiV~l~lP~t~~  217 (333)
T PRK13243        155 IIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK---E-------LG-----A-EYRPLEELLRESDFVSLHVPLTKE  217 (333)
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH---H-------cC-----C-EecCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 89999999999986432110   0       01     1 235899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHH
Q 016162          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR  329 (394)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~  329 (394)
                      |+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.+++
T Consensus       218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~  297 (333)
T PRK13243        218 TYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR  297 (333)
T ss_pred             HhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          330 EGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       330 ~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      .++...+++|+.+|++|+++.|.||
T Consensus       298 ~~~~~~~~~ni~~~~~g~~~~~~v~  322 (333)
T PRK13243        298 EGMAELVAENLIAFKRGEVPPTLVN  322 (333)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999999886

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=6e-68  Score=536.49  Aligned_cols=316  Identities=28%  Similarity=0.377  Sum_probs=280.8

Q ss_pred             CCCCceEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcE
Q 016162           11 NPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA   89 (394)
Q Consensus        11 ~~~~~~~vlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~   89 (394)
                      -|++++||++++++++. ..+.|++.++ ++....   ...+++++.+.+.+ +|++++++.+.+++++++++|+|  |+
T Consensus         6 ~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L--k~   78 (409)
T PRK11790          6 LPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIKD-AHFIGIRSRTQLTEEVLAAAEKL--VA   78 (409)
T ss_pred             CCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcCC-CCEEEEeCCCCCCHHHHhhCCCC--eE
Confidence            35577899999888763 4677777666 665432   13477888888874 99998887778999999999988  99


Q ss_pred             EEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016162           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (394)
Q Consensus        90 I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (394)
                      |++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..   ..+.|.+|+|||+|
T Consensus        79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~---~~~~~~~L~gktvG  155 (409)
T PRK11790         79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNK---SAAGSFEVRGKTLG  155 (409)
T ss_pred             EEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccc---cccCcccCCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999999653   22457899999999


Q ss_pred             EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~  249 (394)
                      |||+|+||+.+|+++ ++|||+|++|||+.....              +    ......+++|++++||+|++|+|+|++
T Consensus       156 IiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~--------------~----~~~~~~~l~ell~~sDiVslh~Plt~~  216 (409)
T PRK11790        156 IVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL--------------G----NARQVGSLEELLAQSDVVSLHVPETPS  216 (409)
T ss_pred             EECCCHHHHHHHHHH-HHCCCEEEEECCCccccc--------------C----CceecCCHHHHHhhCCEEEEcCCCChH
Confidence            999999999999996 899999999998643210              0    012245899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-----CccccCCceEEcCCCCCC
Q 016162          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASA  324 (394)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia~~  324 (394)
                      |+++||++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++.     +|||++|||++|||+||+
T Consensus       217 T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~  296 (409)
T PRK11790        217 TKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS  296 (409)
T ss_pred             HhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence            999999999999999999999999999999999999999999999999999999864     489999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 016162          325 SKWTREGMATLAALNVLGKIKGYPIWGNPNQ  355 (394)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~~  355 (394)
                      |.++++++...+++|+.+|++|+++.+.||.
T Consensus       297 t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~  327 (409)
T PRK11790        297 TQEAQENIGLEVAGKLVKYSDNGSTLSAVNF  327 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcCcceec
Confidence            9999999999999999999999999999983

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-67  Score=518.89  Aligned_cols=290  Identities=29%  Similarity=0.361  Sum_probs=256.7

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCC
Q 016162           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG  109 (394)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~g  109 (394)
                      .+.|++...++....    ..+++++.+.+.+ +|+++++ .+++++++++++|+|  |+|++.|+|+|+||+++|.++|
T Consensus        18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g   89 (317)
T PRK06487         18 LSPLEQAFDELQLHD----ATTPEQVAERLRG-AQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG   89 (317)
T ss_pred             hhHHHhhCCeEEEec----CCCHHHHHHHhCC-CeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence            455655444554432    2356888888874 9988876 457999999999988  9999999999999999999999


Q ss_pred             ceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCC---cccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162          110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (394)
Q Consensus       110 I~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (394)
                      |.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|...   .+.+++|+|||+||||+|+||+.+|+++ +
T Consensus        90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~  168 (317)
T PRK06487         90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E  168 (317)
T ss_pred             CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence            99999999999999999999999999999999999999998654321   1245789999999999999999999997 8


Q ss_pred             cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 016162          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (394)
Q Consensus       187 ~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~ga  266 (394)
                      +|||+|++||++....               .      ....++++++++||+|++|+|+|++|+|+||++.|++||+|+
T Consensus       169 ~fgm~V~~~~~~~~~~---------------~------~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga  227 (317)
T PRK06487        169 AFGMRVLIGQLPGRPA---------------R------PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA  227 (317)
T ss_pred             hCCCEEEEECCCCCcc---------------c------ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence            9999999999864210               0      013589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-Ccccc--CCceEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 016162          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASKWTREGMATLAALNVLGK  343 (394)
Q Consensus       267 ilIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~--~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~  343 (394)
                      +|||+|||++||++||++||++|+++||+||||++||++. +|||.  +|||++|||+||.|.++++++...+++|+.+|
T Consensus       228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~  307 (317)
T PRK06487        228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAF  307 (317)
T ss_pred             EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875 68995  89999999999999999999999999999999


Q ss_pred             HcCCCC
Q 016162          344 IKGYPI  349 (394)
Q Consensus       344 l~g~~~  349 (394)
                      ++|+|+
T Consensus       308 ~~g~~~  313 (317)
T PRK06487        308 FAGKPL  313 (317)
T ss_pred             HcCCCC
Confidence            999876

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-67  Score=516.73  Aligned_cols=301  Identities=29%  Similarity=0.429  Sum_probs=259.2

Q ss_pred             EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcc
Q 016162           17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (394)
Q Consensus        17 ~vlv~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g   94 (394)
                      ||++.++  +++ ...+.|++.+ ++....  .  .+++++.+.+.+ +|+++++ .+++++++++++|+|  |+|++.|
T Consensus         2 ki~~~~~~~~~~-~~~~~l~~~~-~~~~~~--~--~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~   71 (311)
T PRK08410          2 KIVILDAKTLGD-KDLSVFEEFG-DFQIYP--T--TSPEEVIERIKD-ANIIITN-KVVIDKEVLSQLPNL--KLICITA   71 (311)
T ss_pred             eEEEEecCCCCh-hhHHHHhhCc-eEEEeC--C--CCHHHHHHHhCC-CCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence            4555443  443 3456676643 554332  1  256788888874 9999876 567999999999988  9999999


Q ss_pred             cCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc---ccccccCCCeEEEE
Q 016162           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI  171 (394)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~---~~g~~l~gktvGII  171 (394)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+....   ..+++|+|||+|||
T Consensus        72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi  151 (311)
T PRK08410         72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII  151 (311)
T ss_pred             cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999976432110   12579999999999


Q ss_pred             ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhh
Q 016162          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (394)
Q Consensus       172 GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~  251 (394)
                      |+|+||+.+|+++ ++|||+|++|||+.....                  ..+ ...++++++++||+|++|+|+|++|+
T Consensus       152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T~  211 (311)
T PRK08410        152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKTK  211 (311)
T ss_pred             CCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence            9999999999996 899999999999743210                  011 24689999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccC---CceEEcCCCCCCcHH
Q 016162          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM---KNAIVVPHIASASKW  327 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~---~nvilTPHia~~t~~  327 (394)
                      ++||++.|++||||++|||+|||++||++||++||++|+|+ |+||||++||++. +|||++   ||||+|||+||+|.+
T Consensus       212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e  290 (311)
T PRK08410        212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE  290 (311)
T ss_pred             cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence            99999999999999999999999999999999999999999 9999999999864 689986   899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCC
Q 016162          328 TREGMATLAALNVLGKIKGYP  348 (394)
Q Consensus       328 ~~~~~~~~~~~ni~~~l~g~~  348 (394)
                      ++.++...+++|+.+|++|+.
T Consensus       291 ~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        291 ARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             HHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999863

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-66  Score=508.36  Aligned_cols=274  Identities=30%  Similarity=0.384  Sum_probs=247.1

Q ss_pred             CCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHH
Q 016162           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (394)
Q Consensus        50 ~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~  129 (394)
                      .+++|+.+.+.+ +|++++. .+++++++++++|+|  |+|++.|+|+|+||+++|.++||.|+|+||+++.+||||+++
T Consensus        33 ~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~  108 (314)
T PRK06932         33 TSAEQTIERAKD-ADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG  108 (314)
T ss_pred             CChHHHHHHhCC-CcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence            367888888874 9988774 557999999999998  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHcCccCCCCC---CcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH
Q 016162          130 LSLAAARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (394)
Q Consensus       130 ~~L~~~R~~~~~~~~~~~g~~~~w~~---~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~  206 (394)
                      +||+++|++..+++.+++|.|..+..   ..+.+++|+|||+||||+|+||+.+|+++ ++|||+|++||++.....   
T Consensus       109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~~---  184 (314)
T PRK06932        109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASVC---  184 (314)
T ss_pred             HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCccccc---
Confidence            99999999999999999999864321   11245789999999999999999999996 899999999998642100   


Q ss_pred             HHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                                    .   ..+.+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||
T Consensus       185 --------------~---~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL  247 (314)
T PRK06932        185 --------------R---EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL  247 (314)
T ss_pred             --------------c---cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence                          0   02358999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcceEEeeccCCCCCC-CCccc----cCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 016162          287 KQNPMFRVGLDVFEDEPYM-KPGLS----EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP  348 (394)
Q Consensus       287 ~~g~l~gaalDV~~~EP~~-~~~L~----~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~~  348 (394)
                      ++|+++||+||||++||++ ++|||    ++|||++|||+||.|.++++++...+++|+.+|++|+.
T Consensus       248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999986 46898    58999999999999999999999999999999998863

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-64  Score=505.51  Aligned_cols=301  Identities=23%  Similarity=0.254  Sum_probs=264.1

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhcccCCcEEEEcccCccccchhHHhh
Q 016162           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (394)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~--~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~  107 (394)
                      .+.|++.++++.+....  ..+.+++.+.+.+ +|++|+..  +.++++++++++|+|  |+|++.|+|+||||+++|++
T Consensus        68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~  142 (386)
T PLN03139         68 RDWLESQGHQYIVTDDK--EGPDCELEKHIPD-LHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAA  142 (386)
T ss_pred             HHHHHhcCCeEEEeCCC--CCCHHHHHHHhCC-CeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHH
Confidence            45677788888665432  3467888888885 99999864  357999999999998  99999999999999999999


Q ss_pred             CCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhc
Q 016162          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (394)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~  187 (394)
                      +||.|+|+||+|+.+||||++++||++.|++..+++.+++|.|... .....+++|+||||||||+|+||+.+|+++ ++
T Consensus       143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~a  220 (386)
T PLN03139        143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KP  220 (386)
T ss_pred             CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-HH
Confidence            9999999999999999999999999999999999999999997521 112356899999999999999999999997 79


Q ss_pred             CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcE
Q 016162          188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI  267 (394)
Q Consensus       188 ~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gai  267 (394)
                      |||+|++||++.......  .       ..+     .....++++++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus       221 fG~~V~~~d~~~~~~~~~--~-------~~g-----~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  286 (386)
T PLN03139        221 FNCNLLYHDRLKMDPELE--K-------ETG-----AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL  286 (386)
T ss_pred             CCCEEEEECCCCcchhhH--h-------hcC-----ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence            999999999975321110  0       011     12245899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016162          268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG  346 (394)
Q Consensus       268 lIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g  346 (394)
                      |||+|||++||++||++||++|+|+||++|||++||++. +|||++|||++|||+||.|.++++++...+++|+.+|++|
T Consensus       287 lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G  366 (386)
T PLN03139        287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKG  366 (386)
T ss_pred             EEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999864 7999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 016162          347 YPIWG  351 (394)
Q Consensus       347 ~~~~~  351 (394)
                      +++..
T Consensus       367 ~~~~~  371 (386)
T PLN03139        367 EDFPA  371 (386)
T ss_pred             CCCCC
Confidence            97653

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-64  Score=506.64  Aligned_cols=303  Identities=24%  Similarity=0.268  Sum_probs=266.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhcccCCcEEEEcccCccccchhHHhhC
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY  108 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~--~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~  108 (394)
                      +.|++.++++.+...  ...+.+++.+.+.+ +|++|++.  ...+++++++++|+|  |+|+++|+|+||||+++|.++
T Consensus        62 ~~l~~~g~e~~~~~~--~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~~  136 (385)
T PRK07574         62 KFLEERGHELVVTSD--KDGPDSDFEKELPD-ADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASEH  136 (385)
T ss_pred             HHHHhcCcEEEEeCC--CCCCHHHHHHHcCC-CeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHHC
Confidence            567778888765432  23467888888874 99999863  467999999999998  999999999999999999999


Q ss_pred             CceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcC
Q 016162          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (394)
Q Consensus       109 gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~  188 (394)
                      ||.|+|++++|+.+||||++++||+++|++..+++.+++|.|..+. ....+++|+|+||||||+|+||+.+|+++ ++|
T Consensus       137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~-~~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~f  214 (385)
T PRK07574        137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIAD-CVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPF  214 (385)
T ss_pred             CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc-ccccceecCCCEEEEECCCHHHHHHHHHH-HhC
Confidence            9999999999999999999999999999999999999999975431 11246799999999999999999999997 799


Q ss_pred             CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE
Q 016162          189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL  268 (394)
Q Consensus       189 G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail  268 (394)
                      ||+|++|||+.......  .       ..     +.....+++|++++||+|++|+|+|++|+++||++.|++||+|++|
T Consensus       215 G~~V~~~dr~~~~~~~~--~-------~~-----g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l  280 (385)
T PRK07574        215 DVKLHYTDRHRLPEEVE--Q-------EL-----GLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYL  280 (385)
T ss_pred             CCEEEEECCCCCchhhH--h-------hc-----CceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEE
Confidence            99999999986321110  0       01     1223468999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 016162          269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGY  347 (394)
Q Consensus       269 IN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~  347 (394)
                      ||+|||+++|++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.++++++...+++|+.+|++|+
T Consensus       281 IN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~  360 (385)
T PRK07574        281 VNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGR  360 (385)
T ss_pred             EECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999864 69999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 016162          348 PIWGNPN  354 (394)
Q Consensus       348 ~~~~~v~  354 (394)
                      ++.|.-+
T Consensus       361 ~~~~~~~  367 (385)
T PRK07574        361 PIRDEYL  367 (385)
T ss_pred             CCCCCce
Confidence            9987754

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=2.6e-64  Score=500.23  Aligned_cols=323  Identities=25%  Similarity=0.304  Sum_probs=268.5

Q ss_pred             EeCCCCceEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhccc
Q 016162            9 VWNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRA   85 (394)
Q Consensus         9 ~~~~~~~~~vlv~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l   85 (394)
                      ++..++++|||++.+..+.  .| .+.+++.++ . .+..    .+.+|+.+.+. ++|+++++ ...+++++++++|+|
T Consensus        12 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~-~~~~----~~~~e~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L   83 (347)
T PLN02928         12 HHSDMRPTRVLFCGPEFPASYSYTREYLQKYPF-I-QVDA----VAREDVPDVIA-NYDICVPK-MMRLDADIIARASQM   83 (347)
T ss_pred             cCCCCCCCEEEEECCCchhHHHHHHHHhhcCCe-e-EecC----CCHHHHHHHhc-CCcEEEEC-CCCCCHHHHhcCCCc
Confidence            4566778899999877653  12 344443442 2 2221    35678888887 49998876 457999999999988


Q ss_pred             CCcEEEEcccCccccchhHHhhCCceEecCCCC---CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccc
Q 016162           86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL  162 (394)
Q Consensus        86 ~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~---~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~  162 (394)
                        |+|++.|+|+|+||+++|.++||.|+|+|++   ++.+||||++++||+++|++..+++.+++|.|.   .  ..+.+
T Consensus        84 --k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~---~--~~~~~  156 (347)
T PLN02928         84 --KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG---E--PIGDT  156 (347)
T ss_pred             --eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcc---c--ccccC
Confidence              9999999999999999999999999999985   789999999999999999999999999999853   2  35679


Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhh-hhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      |+|||+||||+|+||+.+|+++ ++|||+|++|||+......... .+- ....  ..... .....++++++++||+|+
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~L~ell~~aDiVv  231 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGL-LIPNGDVD--DLVDE-KGGHEDIYEFAGEADIVV  231 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhh-cccccccc--ccccc-cCcccCHHHHHhhCCEEE
Confidence            9999999999999999999997 8999999999997432111000 000 0000  00000 013468999999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPH  320 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPH  320 (394)
                      +|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++ ++|||++|||++|||
T Consensus       232 l~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH  311 (347)
T PLN02928        232 LCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPH  311 (347)
T ss_pred             ECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence            9999999999999999999999999999999999999999999999999999999999999986 479999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016162          321 IASASKWTREGMATLAALNVLGKIKGYPIWG  351 (394)
Q Consensus       321 ia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~  351 (394)
                      +|+.|.++++++...+++|+.+|++|+++.|
T Consensus       312 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  342 (347)
T PLN02928        312 VAGVTEYSYRSMGKIVGDAALQLHAGRPLTG  342 (347)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence            9999999999999999999999999998764

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=7.4e-63  Score=487.67  Aligned_cols=317  Identities=24%  Similarity=0.386  Sum_probs=271.3

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      +|++++++.+.+.. +++.+.+. +++++..... ..+ +|..+.+. ++|+++++..+++++++++++|++++|+|++.
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~-~e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~   76 (332)
T PRK08605          2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALT-DDNVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR   76 (332)
T ss_pred             cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCC-HHHHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence            56788888876653 45555443 2333222111 234 44556776 59999998878999999999998666999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|. |.+. ..|++|+|+||||||+
T Consensus        77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG~  154 (332)
T PRK08605         77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIGT  154 (332)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999884 6542 3578999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+++|++++++|||+|++||++.......            .     .....++++++++||+|++|+|++++|+++
T Consensus       155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvIvl~lP~t~~t~~l  217 (332)
T PRK08605        155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT------------Y-----VDYKDTIEEAVEGADIVTLHMPATKYNHYL  217 (332)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEECCCccHhHHh------------h-----ccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence            99999999997468999999999986542111            0     112358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CC-C-----------ccccCCceEEcC
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK-P-----------GLSEMKNAIVVP  319 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~--~~-~-----------~L~~~~nvilTP  319 (394)
                      ++++.|+.||+|++|||+|||.++|+++|+++|++|+++||+||||+.||.  +. +           +||++|||++||
T Consensus       218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  297 (332)
T PRK08605        218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP  297 (332)
T ss_pred             cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence            999999999999999999999999999999999999999999999999982  32 1           499999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       320 Hia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      |+|+.|.++++++...+++|+.+|++|++..+.||
T Consensus       298 Hia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~  332 (332)
T PRK08605        298 HIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN  332 (332)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999999999998885

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-62  Score=483.78  Aligned_cols=313  Identities=27%  Similarity=0.414  Sum_probs=267.6

Q ss_pred             eEEEEeCCCCc-hH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           16 YRVVSTKPMPG-TR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        16 ~~vlv~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      |||++..--+. .. ..+.+++.++++..  .+. .++.+. .+.+. ++|++++...+++++++++++|+.++|+|++.
T Consensus         2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~   76 (330)
T PRK12480          2 TKIMFFGTRDYEKEMALNWGKKNNVEVTT--SKE-LLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQR   76 (330)
T ss_pred             cEEEEEeCcHHHHHHHHHHHHhcCeEEEE--cCC-CCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence            67766543332 22 33455666655543  222 345554 66776 59999988767899999999984344999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+|+||+++|+++||.|+|+|++++++||||++++||++.|++..+++.+++|.|. |.+. ..|++|+|+||||||+
T Consensus        77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~  154 (330)
T PRK12480         77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT  154 (330)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999874 6432 3578999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+.+|+++ ++|||+|++||++...... .                 .....++++++++||+|++|+|++++|.++
T Consensus       155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l  215 (330)
T PRK12480        155 GRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYHL  215 (330)
T ss_pred             CHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence            99999999997 7999999999998753211 0                 012358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------C----CccccCCceEEcC
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVP  319 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~----------~----~~L~~~~nvilTP  319 (394)
                      ++++.|++||+|++|||+|||.+||++||++||++|+++||+||||++||+.          +    +|||++|||++||
T Consensus       216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  295 (330)
T PRK12480        216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP  295 (330)
T ss_pred             HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence            9999999999999999999999999999999999999999999999999962          1    2699999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       320 Hia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      |+|+.|.++++++...+.+|+.+|++|+...+.||
T Consensus       296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence            99999999999999999999999999999988885

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.1e-61  Score=470.83  Aligned_cols=304  Identities=38%  Similarity=0.532  Sum_probs=264.7

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-cccCCcEEEEcccCccccchhHHhhCCc
Q 016162           32 LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGI  110 (394)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l-~~l~~k~I~~~g~G~d~id~~~a~~~gI  110 (394)
                      .++..+++.......+...+..+....+.+...++.+.....++.+.+.++ |++  |+|+++|+|+||||+++|++|||
T Consensus        31 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI  108 (336)
T KOG0069|consen   31 LLRYQGYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGI  108 (336)
T ss_pred             ccccccccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCc
Confidence            333344444444444444566666666665455555555667788888877 877  99999999999999999999999


Q ss_pred             eEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCc
Q 016162          111 AVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM  190 (394)
Q Consensus       111 ~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~  190 (394)
                      +|+|+|+.++.+|||++++++|.++|++..+++++++|.| +|....+.|..+.||||||+|+|+||+.+|+|| ++|||
T Consensus       109 ~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~  186 (336)
T KOG0069|consen  109 RVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGC  186 (336)
T ss_pred             eEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccc
Confidence            9999999999999999999999999999999999999999 788777789999999999999999999999998 78999


Q ss_pred             EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       191 ~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      .+.+++|+.....+.  .+|+             ....++++++.+||+|++|||+|++|+|+||++.|++||+|++|||
T Consensus       187 ~i~y~~r~~~~~~~~--~~~~-------------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN  251 (336)
T KOG0069|consen  187 VILYHSRTQLPPEEA--YEYY-------------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVN  251 (336)
T ss_pred             eeeeecccCCchhhH--HHhc-------------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEe
Confidence            899998876542221  1111             1146899999999999999999999999999999999999999999


Q ss_pred             cCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016162          271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIW  350 (394)
Q Consensus       271 ~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~  350 (394)
                      ++||+++|++++++||++|++.+|+||||++||.++++|++++||++|||||++|.+++.+|+..++.|+.+++.|+++.
T Consensus       252 ~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~  331 (336)
T KOG0069|consen  252 TARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLL  331 (336)
T ss_pred             ccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999999976789999999999999999999999999999999999999999998


Q ss_pred             CCCC
Q 016162          351 GNPN  354 (394)
Q Consensus       351 ~~v~  354 (394)
                      ..++
T Consensus       332 ~~~~  335 (336)
T KOG0069|consen  332 TPVL  335 (336)
T ss_pred             CcCC
Confidence            7764

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=2.5e-58  Score=459.02  Aligned_cols=279  Identities=27%  Similarity=0.366  Sum_probs=241.2

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      ||||+.+.++.  ..+.+.+.+ ++....  ....+.+++    . ++|++++++.+++++++++ .+++  |+|+++++
T Consensus         1 mkIl~d~~~~~--~~~~~~~~~-ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~   67 (378)
T PRK15438          1 MKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA   67 (378)
T ss_pred             CEEEEeCCcch--HHHHHhhcC-cEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence            57899888763  245665543 665543  233455553    3 5999999988899999986 6777  99999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (394)
                      |+||||++++.++||.|+|+||+|+.+||||++++||++.|+.                     |.+|+||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~  126 (378)
T PRK15438         68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN  126 (378)
T ss_pred             cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999851                     2479999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh----hh
Q 016162          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (394)
Q Consensus       176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~----t~  251 (394)
                      ||+.+|+++ ++|||+|++|||.....               +. .   ..+.++++++++||+|++|+|+|++    |+
T Consensus       127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~~-~---~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~  186 (378)
T PRK15438        127 VGRRLQARL-EALGIKTLLCDPPRADR---------------GD-E---GDFRSLDELVQEADILTFHTPLFKDGPYKTL  186 (378)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc---------------cc-c---cccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence            999999997 89999999999854321               00 0   1246899999999999999999996    99


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHH
Q 016162          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      |+||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++|+..++ |+||||||+|.+++.+
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~  265 (378)
T PRK15438        187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKAR  265 (378)
T ss_pred             cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988778988665 9999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCC
Q 016162          332 MATLAALNVLGKIKGYPIW  350 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~  350 (394)
                      +..++.+|+.+|+ |.+..
T Consensus       266 ~~~~~~~~l~~~~-~~~~~  283 (378)
T PRK15438        266 GTTQVFEAYSKFI-GHEQH  283 (378)
T ss_pred             HHHHHHHHHHHHH-cCccc
Confidence            9999999999998 55543

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=1.1e-57  Score=446.61  Aligned_cols=298  Identities=19%  Similarity=0.218  Sum_probs=244.5

Q ss_pred             EEEEeCCC-CchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           17 RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        17 ~vlv~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      .+++..+. ..+.|.+.|++.-++.++.....     ++    .. ++|+++++..   +.++++ .++|  |+|++.|+
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~a~~~~~~~~---~~~~l~-~~~L--k~I~~~~a   65 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-----GD----ND-PADYALVWHP---PVEMLA-GRDL--KAVFALGA   65 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-----CC----Cc-cCeEEEEeCC---ChHHhc-cCCc--eEEEEccc
Confidence            34443333 44448888887633333321111     11    12 5898888653   356665 5777  99999999


Q ss_pred             CccccchhH-----HhhCCceEecCCC-CCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016162           96 GYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (394)
Q Consensus        96 G~d~id~~~-----a~~~gI~v~n~p~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (394)
                      |+|++|...     +.++||.|+|+++ .++.+||||++++||+++|++..+.+.+++|.|..     ..+.+++|+|||
T Consensus        66 G~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~-----~~~~~l~g~tvg  140 (312)
T PRK15469         66 GVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQP-----LPEYHREDFTIG  140 (312)
T ss_pred             ccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCC-----CCCCCcCCCEEE
Confidence            999998332     3458999999875 68999999999999999999999999999998643     234689999999


Q ss_pred             EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~  249 (394)
                      |||+|+||+.+|+++ ++|||+|++||++.....              +..  .+....++++++++||+|++|+|+|++
T Consensus       141 IvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt~~  203 (312)
T PRK15469        141 ILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNTPE  203 (312)
T ss_pred             EECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCCHH
Confidence            999999999999997 799999999998754310              000  011245899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHH
Q 016162          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWT  328 (394)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~  328 (394)
                      |+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++. +|||++|||++|||+|+.|.++
T Consensus       204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~  283 (312)
T PRK15469        204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA  283 (312)
T ss_pred             HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence            999999999999999999999999999999999999999999999999999999875 6999999999999999999874


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          329 REGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       329 ~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                        ++...+.+|+.+|++|+++.|.||
T Consensus       284 --~~~~~~~~n~~~~~~g~~~~~~V~  307 (312)
T PRK15469        284 --EAVEYISRTIAQLEKGERVCGQVD  307 (312)
T ss_pred             --HHHHHHHHHHHHHHcCCCCcccCC
Confidence              578889999999999999999886

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.6e-57  Score=454.41  Aligned_cols=283  Identities=25%  Similarity=0.325  Sum_probs=243.5

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      ||||+.+++|-.  .+.+.+.+ ++....  ....+.+    .+. ++|++++++.+++++++++ .+++  |+|+++++
T Consensus         1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~--~~~~~~~----~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~   67 (381)
T PRK00257          1 MKIVADENIPLL--DAFFAGFG-EIRRLP--GRAFDRA----AVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI   67 (381)
T ss_pred             CEEEEecCchhH--HHHHhhCC-cEEEcC--CcccCHH----HhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence            689999988632  34554443 555433  2223333    344 5999999988899999997 4766  99999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (394)
                      |+||||++++.++||.|+|+||+|+.+||||++++||++.|+                     .|.++.||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~  126 (381)
T PRK00257         68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH  126 (381)
T ss_pred             cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence            999999999999999999999999999999999999999884                     13579999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCCh----hhh
Q 016162          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY  251 (394)
Q Consensus       176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~----~t~  251 (394)
                      ||+.+|+++ ++|||+|++|||..... +             +     ...+.++++++++||+|++|+|+|+    .|+
T Consensus       127 IG~~va~~l-~a~G~~V~~~Dp~~~~~-~-------------~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~  186 (381)
T PRK00257        127 VGGRLVRVL-RGLGWKVLVCDPPRQEA-E-------------G-----DGDFVSLERILEECDVISLHTPLTKEGEHPTR  186 (381)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc-c-------------c-----CccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence            999999997 89999999999864321 0             0     0124689999999999999999999    599


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHH
Q 016162          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      |+||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++|++. |+++|||+||+|.+++.+
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r  265 (381)
T PRK00257        187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKAR  265 (381)
T ss_pred             ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999877889985 999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCC
Q 016162          332 MATLAALNVLGKIKGYPIWGNP  353 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~v  353 (394)
                      +..++.+|+.+|+.+.+.....
T Consensus       266 ~~~~~~~nl~~~~~~~~~~~~~  287 (381)
T PRK00257        266 GTAQIYQALCRFFGIPARVSLT  287 (381)
T ss_pred             HHHHHHHHHHHHHcCCCccchh
Confidence            9999999999999987655444

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=8.5e-57  Score=438.14  Aligned_cols=255  Identities=22%  Similarity=0.329  Sum_probs=224.1

Q ss_pred             CCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHH
Q 016162           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (394)
Q Consensus        62 ~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~  141 (394)
                      ++|+++++..       +..+++|  |+|++.|+|+|+||+++|.++||.++| +|+++.+||||++++||+++|++..+
T Consensus        34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~  103 (303)
T PRK06436         34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICEN  103 (303)
T ss_pred             CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHH
Confidence            4788765532       1235666  999999999999999999999888777 48899999999999999999999999


Q ss_pred             HHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC
Q 016162          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (394)
Q Consensus       142 ~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (394)
                      ++.+++|.|..+     .+++|+||||||||+|+||+++|+++ ++|||+|++|||+....               +.. 
T Consensus       104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~-  161 (303)
T PRK06436        104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS-  161 (303)
T ss_pred             HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence            999999987532     35799999999999999999999996 89999999999975321               110 


Q ss_pred             ccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016162          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (394)
Q Consensus       222 ~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~  301 (394)
                         ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.||+||||++
T Consensus       162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~  238 (303)
T PRK06436        162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN  238 (303)
T ss_pred             ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence               11358999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCceEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       302 EP~~~~~L~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      ||+++..  .+|||++|||++ ++|.++++++...+++|+.+|++|++ .|.||
T Consensus       239 EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~  289 (303)
T PRK06436        239 EPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVR  289 (303)
T ss_pred             CCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEc
Confidence            9986542  689999999986 48899999999999999999999987 57775

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=2.6e-47  Score=345.33  Aligned_cols=177  Identities=42%  Similarity=0.563  Sum_probs=152.4

Q ss_pred             HHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH
Q 016162          128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV  207 (394)
Q Consensus       128 l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~  207 (394)
                      +++||++.|++..+++.+++|.|  |.+....+++++|+||||||+|+||+.+|+++ ++|||+|++|||+.......  
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~--   75 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA--   75 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH--
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc--
Confidence            68999999999999999999997  23344577899999999999999999999997 89999999999998764311  


Q ss_pred             HhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                      ..       .     .+ ...+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus        76 ~~-------~-----~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   76 DE-------F-----GV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             HH-------T-----TE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             cc-------c-----cc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence            00       0     11 34699999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceEEeeccCCCCCCC-CccccCCceEEcCCCC
Q 016162          288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA  322 (394)
Q Consensus       288 ~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia  322 (394)
                      +|++.||+||||++||++. +|||++|||++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            9999999999999999975 5999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.97  E-value=1.2e-31  Score=258.59  Aligned_cols=281  Identities=28%  Similarity=0.372  Sum_probs=236.0

Q ss_pred             CHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHH
Q 016162           51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL  130 (394)
Q Consensus        51 ~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~  130 (394)
                      +.+|+.+..=..+-+-...-+..++++-+++.+.+  +++.+.|.|+|++|+.+|.+.||.|||.|+...+.+|+-++..
T Consensus        62 stqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h  139 (435)
T KOG0067|consen   62 STQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH  139 (435)
T ss_pred             chHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence            55677654322233333333556788888999888  9999999999999999999999999999999999999999999


Q ss_pred             HHHHHhchHHHHHHHHcCccC-CCCCC---cccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH
Q 016162          131 SLAAARRIVEADEFMRAGLYD-GWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (394)
Q Consensus       131 ~L~~~R~~~~~~~~~~~g~~~-~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~  206 (394)
                      +|.++|+.....+.+++|.|. .|...   ......++|.++|++|+|+.|+.++.+ |++||..|+.||++...-.+.+
T Consensus       140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~~  218 (435)
T KOG0067|consen  140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDKS  218 (435)
T ss_pred             HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhhh
Confidence            999999999999999999874 23221   112356899999999999999999999 5999999999999987644331


Q ss_pred             HHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                                     .+.....++.|++.++|.+++||.+++.+.++|+.-.+.+|+.|++++|++||+++|+.+|.++|
T Consensus       219 ---------------lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaL  283 (435)
T KOG0067|consen  219 ---------------LGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQAL  283 (435)
T ss_pred             ---------------cccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhh
Confidence                           12234457999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC---CCCCCCC
Q 016162          287 KQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGY---PIWGNPN  354 (394)
Q Consensus       287 ~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~---~~~~~v~  354 (394)
                      +.|++.+++=.-|     ...||-+.||.|+|||.++.+..+...+...++..+++...|.   .++|.||
T Consensus       284 k~G~i~~aa~~~~-----~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvn  349 (435)
T KOG0067|consen  284 KSGRIRGAAPRSF-----KQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVN  349 (435)
T ss_pred             ccCceecccCccc-----ccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHh
Confidence            9999999981111     1247888899999999999999999999999999999999884   4777776

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.86  E-value=2.9e-21  Score=196.49  Aligned_cols=171  Identities=20%  Similarity=0.325  Sum_probs=136.8

Q ss_pred             EcccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 016162           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (394)
Q Consensus        92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGI  170 (394)
                      -+++|+..+- ++.....||+|+|+|++++.++||+++++++++..      ..+|.+           +..+.||+++|
T Consensus       197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~-----------~~~LaGKtVgV  259 (476)
T PTZ00075        197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT-----------DVMIAGKTVVV  259 (476)
T ss_pred             cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc-----------CCCcCCCEEEE
Confidence            3477776652 22223478999999999999999999999999884      334443           25799999999


Q ss_pred             EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (394)
Q Consensus       171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t  250 (394)
                      +|+|.||+.+|+++ ++|||+|+++++++....+...         .|     + ...+++++++.||+|++|+    .+
T Consensus       260 IG~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~---------~G-----~-~~~~leell~~ADIVI~at----Gt  319 (476)
T PTZ00075        260 CGYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAAM---------EG-----Y-QVVTLEDVVETADIFVTAT----GN  319 (476)
T ss_pred             ECCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHh---------cC-----c-eeccHHHHHhcCCEEEECC----Cc
Confidence            99999999999997 8999999999877654322110         11     1 2357999999999999985    47


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC
Q 016162          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK  306 (394)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~  306 (394)
                      .++|+++.|+.||+|++|||+||+   |++.++++|+++.    ++|+++.||...
T Consensus       320 ~~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        320 KDIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             ccccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            889999999999999999999999   7888889998753    789999999754

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.84  E-value=7.5e-20  Score=157.75  Aligned_cols=101  Identities=32%  Similarity=0.441  Sum_probs=87.0

Q ss_pred             EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCc
Q 016162           18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (394)
Q Consensus        18 vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~   97 (394)
                      ||++++++++ .++.|++ ++++++..    ..+.+++.+.+.+ +|+++++..+++++++++++|+|  |+|++.|+|+
T Consensus         1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~~-~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~   71 (133)
T PF00389_consen    1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLKD-ADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV   71 (133)
T ss_dssp             EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHTT-ESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred             eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhCC-CeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence            6889999774 5788888 66887665    3478899999985 99999998877999999999988  9999999999


Q ss_pred             cccchhHHhhCCceEecCCCCCchhhHHHH
Q 016162           98 NNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (394)
Q Consensus        98 d~id~~~a~~~gI~v~n~p~~~~~~vAE~~  127 (394)
                      |+||+++|+++||.|+|+||+++.+||||+
T Consensus        72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.83  E-value=1.1e-19  Score=176.39  Aligned_cols=198  Identities=18%  Similarity=0.186  Sum_probs=145.5

Q ss_pred             HHHHHHhCCCeEEEecCCCC-----CCCHHHHHHH-hcCCCcEEEecCC----------------ccccHHHHHHhcccC
Q 016162           29 WINLLIEQDCRVEICTQKKT-----ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRAG   86 (394)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~-----~~~~~el~~~-~~~~~d~ii~~~~----------------~~i~~~~l~~l~~l~   86 (394)
                      ..+.|.+.|+.+.....+..     ..+..++.+. +. ++|++|.-.+                ..+++++++++|.  
T Consensus        16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~--   92 (287)
T TIGR02853        16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG--   92 (287)
T ss_pred             HHHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcCC--
Confidence            45778888988876644311     0112222322 33 5888875332                2356788888873  


Q ss_pred             CcEEEEcccCccccchh-HHhhCCceEe------cCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccc
Q 016162           87 GKAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV  159 (394)
Q Consensus        87 ~k~I~~~g~G~d~id~~-~a~~~gI~v~------n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~  159 (394)
                         ++...+|+++.|++ +|+++||.|+      |++.+|+.++||+++.+++..                        .
T Consensus        93 ---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~  145 (287)
T TIGR02853        93 ---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------T  145 (287)
T ss_pred             ---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------c
Confidence               44466788888888 9999999999      999999999999999877732                        1


Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +.+++|++++|+|+|.||+.+|++| +++|++|++++|+.... +..        ...+..   .....+++++++++|+
T Consensus       146 ~~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~-~~~--------~~~g~~---~~~~~~l~~~l~~aDi  212 (287)
T TIGR02853       146 DFTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADL-ARI--------TEMGLI---PFPLNKLEEKVAEIDI  212 (287)
T ss_pred             CCCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHCCCe---eecHHHHHHHhccCCE
Confidence            2378999999999999999999997 79999999999987542 111        111211   1123467889999999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |++|+|.     .+++++.++.|++++++||++..
T Consensus       213 Vint~P~-----~ii~~~~l~~~k~~aliIDlas~  242 (287)
T TIGR02853       213 VINTIPA-----LVLTADVLSKLPKHAVIIDLASK  242 (287)
T ss_pred             EEECCCh-----HHhCHHHHhcCCCCeEEEEeCcC
Confidence            9999994     37789999999999999999873

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.68  E-value=2.3e-15  Score=146.99  Aligned_cols=195  Identities=19%  Similarity=0.182  Sum_probs=142.3

Q ss_pred             HHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCCcEEEecCC----------------ccccHHHHHHhc
Q 016162           29 WINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAALS   83 (394)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~---------~~~el~~~~~~~~d~ii~~~~----------------~~i~~~~l~~l~   83 (394)
                      ..+.|.+.|+++.+...++...         +.++   .+. ++|+++.-.+                ..++++.++.+|
T Consensus        17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~   92 (296)
T PRK08306         17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP   92 (296)
T ss_pred             HHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence            4677888899887654432111         2222   333 5898885422                123678899999


Q ss_pred             ccCCcEEEEcccCccccchhHHhhCCceEecCCCC------CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc
Q 016162           84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL  157 (394)
Q Consensus        84 ~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~------~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~  157 (394)
                      +.  ..+ ..|.+.++++ +.|.++||.+.+.+..      |+.++||.++.+++.  +                     
T Consensus        93 ~~--~~v-~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~--~---------------------  145 (296)
T PRK08306         93 EH--CTI-FSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE--H---------------------  145 (296)
T ss_pred             CC--CEE-EEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH--h---------------------
Confidence            85  433 3688999988 8899999999997764      889999997765431  0                     


Q ss_pred             ccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       158 ~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                       .+.+++|++++|||+|.+|+.+++.| +++|++|+++||+.... +. ..       ..|.   ......++.+.++++
T Consensus       146 -~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~-~~-~~-------~~G~---~~~~~~~l~~~l~~a  211 (296)
T PRK08306        146 -TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHL-AR-IT-------EMGL---SPFHLSELAEEVGKI  211 (296)
T ss_pred             -CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH-HH-------HcCC---eeecHHHHHHHhCCC
Confidence             11367899999999999999999997 79999999999987542 11 11       1121   111234677889999


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|+.++|     ..+++++.++.|++++++||++.
T Consensus       212 DiVI~t~p-----~~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        212 DIIFNTIP-----ALVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CEEEECCC-----hhhhhHHHHHcCCCCcEEEEEcc
Confidence            99999998     35688999999999999999985

>PLN02494 adenosylhomocysteinase

Probab=99.62  E-value=1.3e-15  Score=154.92  Aligned_cols=121  Identities=20%  Similarity=0.318  Sum_probs=101.3

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+.|++++|+|+|.||+.+|+++ ++|||+|+++++++.........         |     + ...+++++++.+|+|
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~---------G-----~-~vv~leEal~~ADVV  313 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALME---------G-----Y-QVLTLEDVVSEADIF  313 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhc---------C-----C-eeccHHHHHhhCCEE
Confidence            357999999999999999999996 89999999999887543222111         1     1 124788999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCcceEEeeccCCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDE  302 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR-G~~vde~aL~~a--L~~g~l~gaalDV~~~E  302 (394)
                      +.+    ..+.++++++.|+.||+|++|+|++| +..||+++|.++  ++.+.++ +.+|+|+.|
T Consensus       314 I~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        314 VTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             EEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            974    45789999999999999999999999 689999999998  8888877 999999875

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.61  E-value=2.3e-14  Score=144.68  Aligned_cols=121  Identities=27%  Similarity=0.318  Sum_probs=101.2

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++....+..         ..|     + ...+++++++.+|+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~---------~~G-----~-~v~~leeal~~aDVV  254 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAA---------MDG-----F-RVMTMEEAAKIGDIF  254 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHH---------hcC-----C-EeCCHHHHHhcCCEE
Confidence            358999999999999999999996 899999999988775433221         112     1 234678899999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeccCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED  301 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l~gaalDV~~~  301 (394)
                      +.++    .+.++|+.+.|..||+|++++|++|+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus       255 ItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       255 ITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             EECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            8765    3688899999999999999999999998 9999999999888888999999873

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.49  E-value=1.7e-12  Score=131.77  Aligned_cols=156  Identities=22%  Similarity=0.292  Sum_probs=112.5

Q ss_pred             EcccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 016162           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (394)
Q Consensus        92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGI  170 (394)
                      -+++|+..+- .....+.+++|.|++..++.+.-|...+.-.+....+.      +.           .+..+.|++++|
T Consensus       155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------ra-----------t~~~l~Gk~VlV  217 (425)
T PRK05476        155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------RA-----------TNVLIAGKVVVV  217 (425)
T ss_pred             cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------Hh-----------ccCCCCCCEEEE
Confidence            3577776652 22223578999999999988865544433332222111      11           123589999999


Q ss_pred             EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (394)
Q Consensus       171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t  250 (394)
                      +|+|.||+.+|+++ +++|++|+++|+++....+...         .|     + ...++++++..+|+|+.++    .+
T Consensus       218 iG~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~---------~G-----~-~v~~l~eal~~aDVVI~aT----G~  277 (425)
T PRK05476        218 AGYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAAM---------DG-----F-RVMTMEEAAELGDIFVTAT----GN  277 (425)
T ss_pred             ECCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHh---------cC-----C-EecCHHHHHhCCCEEEECC----CC
Confidence            99999999999996 8999999999988765332211         11     1 1347889999999998875    35


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016162          251 YHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (394)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~  284 (394)
                      .++|+.+.|..||+|++++|+++... +|.++|.+
T Consensus       278 ~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        278 KDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            67899999999999999999999776 77777654

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.46  E-value=1.9e-13  Score=133.11  Aligned_cols=93  Identities=26%  Similarity=0.332  Sum_probs=75.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..|+||||||||+|+||+.+|++| +++|++|++|++..... +.        ....|     + ...+++|++++||+|
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~--------A~~~G-----~-~v~sl~Eaak~ADVV   75 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EV--------AKADG-----F-EVMSVSEAVRTAQVV   75 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HH--------HHHcC-----C-EECCHHHHHhcCCEE
Confidence            479999999999999999999998 79999999998653221 11        01112     1 124899999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      ++|+|+ +++.++++++.++.||+|++|+-
T Consensus        76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence            999996 77899999999999999997754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.35  E-value=2.3e-12  Score=114.94  Aligned_cols=115  Identities=24%  Similarity=0.262  Sum_probs=86.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||+.+|++| ..-|.+|++|||++++..+ +        ...+     .....++.|++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~~~-~--------~~~g-----~~~~~s~~e~~~~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKAEA-L--------AEAG-----AEVADSPAEAAEQADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHHHH-H--------HHTT-----EEEESSHHHHHHHBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhhhh-h--------HHhh-----hhhhhhhhhHhhcccceEeecc
Confidence            5899999999999999998 5789999999999765322 1        1122     2346799999999999999999


Q ss_pred             CChhhhhccc-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162          246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (394)
Q Consensus       246 lt~~t~~li~-~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD  297 (394)
                      ..++++.++. .+.++.+++|.++||+++..+-....+.+.+.+..  ...+|
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vd  117 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVD  117 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEE
T ss_pred             cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeee
Confidence            8788777663 23788899999999999999999999999998654  44555

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.34  E-value=6.7e-12  Score=121.07  Aligned_cols=124  Identities=23%  Similarity=0.186  Sum_probs=99.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      .+||+||+|.||..+|++| ..-|..|++|||++++..+.        +...|.     ....++.|+.+.+|+|++|+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~--------~~~~Ga-----~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL--------LAAAGA-----TVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH--------HHHcCC-----cccCCHHHHHHhCCEEEEecC
Confidence            4799999999999999998 68899999999998764222        122232     335688999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP  303 (394)
                      .+++.+.++-  ...++.+|+|+++||+++.++...+.+.+++++..+...=-=|.-..+
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            9999888874  578999999999999999999999999999998864433222444443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.33  E-value=9.2e-12  Score=110.23  Aligned_cols=103  Identities=29%  Similarity=0.431  Sum_probs=75.9

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+.||++.|+|||.+|+.+|+.| +++|++|++++..+....+...+.|               ...+++++++++|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~   82 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF   82 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence            468999999999999999999997 8999999999999988777665543               235899999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~  283 (394)
                      +.++-    ...++..+.|.+||+|+++.|++.-.. +|-+.|.
T Consensus        83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~  122 (162)
T PF00670_consen   83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALE  122 (162)
T ss_dssp             EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred             EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeecccc
Confidence            88764    367889999999999999999987544 5544443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.23  E-value=3.6e-10  Score=114.68  Aligned_cols=105  Identities=25%  Similarity=0.381  Sum_probs=83.2

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++......         ...|     + ...++++.+..+|+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A---------~~~G-----~-~~~~~~e~v~~aDV  260 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA---------AMEG-----Y-EVMTMEEAVKEGDI  260 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH---------HhcC-----C-EEccHHHHHcCCCE
Confidence            3568999999999999999999996 89999999999887543221         1112     1 12356788999999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~  284 (394)
                      |+.|..    +.+.++...|..||+|++++|++++.+ +|..+|..
T Consensus       261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            998753    456788888999999999999999876 88777764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.23  E-value=4.7e-11  Score=116.12  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=88.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl  246 (394)
                      +|||||+|.||+.+|+.+ ...|++|++||+++... +..        ...|.     ....++.+++++||+|++|+|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g~-----~~~~~~~~~~~~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DEL--------LAAGA-----VTAETARQVTEQADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCCC-----cccCCHHHHHhcCCEEEEecCC
Confidence            589999999999999998 58899999999987542 211        11221     1245788999999999999998


Q ss_pred             Chhhhhcc-c-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       247 t~~t~~li-~-~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ++.++.++ + ...+..+++|+++||+++..+.+.++|.+.+++..+.
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            87777664 3 3467889999999999999999999999999876443

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.21  E-value=6.6e-11  Score=115.24  Aligned_cols=123  Identities=20%  Similarity=0.229  Sum_probs=94.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||+.+|+.+ ...|.+|++|||++..... .        ...+.     ....++++++.+||+|++|+|
T Consensus         3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~~~-~--------~~~g~-----~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAVAE-V--------IAAGA-----ETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH-H--------HHCCC-----eecCCHHHHHhcCCEEEEeCC
Confidence            4799999999999999998 5789999999998765221 1        11121     224578999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP  303 (394)
                      .+..++.++.  .+.+..+++|.++||+++..+...+++.+.+.+..+...---|+-.+|
T Consensus        68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            8888777763  346788999999999999999888899999887655443333454433

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.17  E-value=1.3e-10  Score=113.50  Aligned_cols=112  Identities=13%  Similarity=0.170  Sum_probs=90.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||..+|+.+ ...|.+|++||+++.... .+        ...+.     ....++.+++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~~-~~--------~~~g~-----~~~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAVD-AL--------VDKGA-----TPAASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HH--------HHcCC-----cccCCHHHHHhcCCEEEEecC
Confidence            4799999999999999998 577999999999876532 11        11121     234688899999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      .+...+.++.  ...+..+++|.++||++++.+...+.+.+.+.+..+.
T Consensus        67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8776777664  3467789999999999999999999999999887654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.17  E-value=1.9e-10  Score=112.54  Aligned_cols=113  Identities=19%  Similarity=0.271  Sum_probs=90.5

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  243 (394)
                      +|||||+|+||+.+|++| ...|.+|++||++++...+         +...|     .....++++++++   +|+|++|
T Consensus         2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~~~---------~~~~g-----~~~~~s~~~~~~~~~~advVi~~   66 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAVDV---------AGKLG-----ITARHSLEELVSKLEAPRTIWVM   66 (299)
T ss_pred             EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHHHH---------HHHCC-----CeecCCHHHHHHhCCCCCEEEEE
Confidence            799999999999999998 5789999999998754321         11122     1234688898876   6999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD  297 (394)
                      +|..+.++.++ .+.+..+++|.++||+++..+.+..++.+.+++..+.  .+|
T Consensus        67 vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         67 VPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             ecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            99877888877 4677889999999999999999999999999876543  366

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.10  E-value=3.3e-10  Score=111.74  Aligned_cols=119  Identities=23%  Similarity=0.239  Sum_probs=85.8

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..|+|++|||||+|+||+++|+.| +.+|++|+++++........ .       ...|     +. ..++++++++||+|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~-A-------~~~G-----~~-~~s~~eaa~~ADVV   77 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK-A-------EADG-----FE-VLTVAEAAKWADVI   77 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH-H-------HHCC-----Ce-eCCHHHHHhcCCEE
Confidence            468999999999999999999998 79999999887764432211 1       1112     12 24889999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~  304 (394)
                      ++++|.+.. ..+++++.+..|++|++| -++.|--+..      ++  ...+..+||+-..|.
T Consensus        78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~------~~--~~p~~~~~Vi~vaPn  131 (330)
T PRK05479         78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIHF------GQ--IVPPADVDVIMVAPK  131 (330)
T ss_pred             EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChhh------ce--eccCCCCcEEEeCCC
Confidence            999996554 777778888999999988 6666632211      11  123456788887775

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.07  E-value=8.2e-10  Score=108.09  Aligned_cols=110  Identities=21%  Similarity=0.276  Sum_probs=88.5

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  243 (394)
                      +|||||+|.||+.+|++| ...|.+|.+||+++....+ +        ...|     .....+++++++.   +|+|++|
T Consensus         2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~~~-~--------~~~g-----~~~~~~~~e~~~~~~~~dvvi~~   66 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAVEA-L--------AEEG-----ATGADSLEELVAKLPAPRVVWLM   66 (301)
T ss_pred             EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHHHH-H--------HHCC-----CeecCCHHHHHhhcCCCCEEEEE
Confidence            799999999999999998 5789999999999765321 1        1112     2234588888876   6999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +|..+.+..++ ...+..+++|.++||++++.......+.+.+++..+.
T Consensus        67 v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~  114 (301)
T PRK09599         67 VPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH  114 (301)
T ss_pred             ecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence            99776777777 4677889999999999999999999999999887654

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.04  E-value=1.4e-09  Score=112.74  Aligned_cols=128  Identities=12%  Similarity=0.126  Sum_probs=100.1

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  243 (394)
                      +|||||+|.||+.+|++| ..-|.+|.+|||++++.. .+.+..    ...|...  .....+++|+++.   +|+|++|
T Consensus         8 ~IG~IGLG~MG~~mA~nL-~~~G~~V~V~NRt~~k~~-~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNI-AEKGFPISVYNRTTSKVD-ETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CEEEEeeHHHHHHHHHHH-HhCCCeEEEECCCHHHHH-HHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence            699999999999999998 577999999999987532 221100    0012111  1134688888876   9999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP  303 (394)
                      +|..+.+..++ ...++.+++|.++||+++...-++..+.+.+++..+.....=|.-.++
T Consensus        80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            99999888888 578889999999999999999999999999998877766666776554

>PLN02256 arogenate dehydrogenase

Probab=99.04  E-value=4.1e-09  Score=103.38  Aligned_cols=136  Identities=15%  Similarity=0.193  Sum_probs=92.6

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~  241 (394)
                      -++++|||||+|.||+.+|+.+ +..|.+|++||++......   .       ..|.     ....++++++ ..+|+|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a---~-------~~gv-----~~~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA---A-------ELGV-----SFFRDPDDFCEEHPDVVL   97 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH---H-------HcCC-----eeeCCHHHHhhCCCCEEE
Confidence            3667999999999999999998 6789999999998632111   1       1121     1245788876 4799999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----ccccCCceEE
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----GLSEMKNAIV  317 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~----~L~~~~nvil  317 (394)
                      +|+|. ..+..++.+-....++++++++|++..+-+..+++.+.+..+      ..+....|...+    ..+...++++
T Consensus        98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~------~~~V~~HPmaG~e~~~~~~~~~~~~~  170 (304)
T PLN02256         98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEE------FDILCTHPMFGPESGKGGWAGLPFVY  170 (304)
T ss_pred             EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCC------CeEEecCCCCCCCCCccccCCCeEEE
Confidence            99994 456666644335678999999999996544444554444322      245556776321    3566677888


Q ss_pred             cCCC
Q 016162          318 VPHI  321 (394)
Q Consensus       318 TPHi  321 (394)
                      +|+.
T Consensus       171 ~~~~  174 (304)
T PLN02256        171 DKVR  174 (304)
T ss_pred             ecce
Confidence            8763

>PLN02712 arogenate dehydrogenase

Probab=99.02  E-value=1.4e-09  Score=116.90  Aligned_cols=112  Identities=16%  Similarity=0.204  Sum_probs=83.5

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-cc
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA  237 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~a  237 (394)
                      .|.++.+++|||||+|+||+.+|+.+ +.+|++|++||++....  . .       ...|.     ....++++++. .+
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~--~-a-------~~~Gv-----~~~~~~~el~~~~a  426 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSD--E-A-------QKLGV-----SYFSDADDLCEEHP  426 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHH--H-H-------HHcCC-----eEeCCHHHHHhcCC
Confidence            46788999999999999999999998 68899999999985321  1 1       11121     12458888876 58


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                      |+|++|+| ...+..++.+-.+..||+|++++|++.++-...+++.+.+.
T Consensus       427 DvVILavP-~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~  475 (667)
T PLN02712        427 EVILLCTS-ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP  475 (667)
T ss_pred             CEEEECCC-hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc
Confidence            99999999 46778888765555799999999999987444444444433

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.96  E-value=4.3e-09  Score=108.89  Aligned_cols=128  Identities=16%  Similarity=0.240  Sum_probs=98.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc---ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l  242 (394)
                      .+|||||+|.||+++|++| ...|.+|.+|||+++...+ +.+.    ....|   .......+++|+++   ++|+|++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~~-l~~~----~~~~g---~~i~~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTEE-FVKK----AKEGN---TRVKGYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HHHh----hhhcC---CcceecCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999998 5789999999999876322 1110    00011   11223568999886   4899999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP  303 (394)
                      ++|....+..++ ++.+..+++|.++||++.+..-|+..+.+.+.+..+.....=|.-.++
T Consensus        73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            999888888888 567888999999999999999999999999998777665555665543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.96  E-value=4.5e-09  Score=102.55  Aligned_cols=113  Identities=15%  Similarity=0.130  Sum_probs=87.7

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl  246 (394)
                      +|||||+|+||+.+|+.| ...|.+|++||+++..  +.+        ...|.     ....+..+++++||+|++|+|.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~--------~~~g~-----~~~~s~~~~~~~advVi~~v~~   65 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DEL--------LSLGA-----VSVETARQVTEASDIIFIMVPD   65 (292)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHH--------HHcCC-----eecCCHHHHHhcCCEEEEeCCC
Confidence            699999999999999998 5778999999987632  221        11121     2346888999999999999998


Q ss_pred             Chhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162          247 DKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (394)
Q Consensus       247 t~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD  297 (394)
                      .+..+..+.  ...++.+++|.++||+++..+-....+.+.+.+..+.  .+|
T Consensus        66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd  116 (292)
T PRK15059         66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD  116 (292)
T ss_pred             hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence            877777653  2357778999999999999998889999988876433  445

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.93  E-value=1.7e-08  Score=97.75  Aligned_cols=136  Identities=14%  Similarity=0.203  Sum_probs=86.5

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl  246 (394)
                      +|||||+|.||+++|+.| +..|.+|++||++.......         ...|...   ....+. +.+++||+|++|+|.
T Consensus         2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a---------~~~g~~~---~~~~~~-~~~~~aDlVilavp~   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERA---------IERGLVD---EASTDL-SLLKDCDLVILALPI   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH---------HHCCCcc---cccCCH-hHhcCCCEEEEcCCH
Confidence            799999999999999998 57799999999986542211         1112111   111234 468999999999994


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----------ccccCCceE
Q 016162          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----------GLSEMKNAI  316 (394)
Q Consensus       247 t~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~----------~L~~~~nvi  316 (394)
                      . ....++ ++....++++++++|++.-+.   . .++++......     +....|...+          .|+...+++
T Consensus        68 ~-~~~~~~-~~l~~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~-----~v~~HPm~G~~~~g~~~a~~~lf~g~~~~  136 (279)
T PRK07417         68 G-LLLPPS-EQLIPALPPEAIVTDVGSVKA---P-IVEAWEKLHPR-----FVGSHPMAGTAESGVEAGQRGLFKNRPWV  136 (279)
T ss_pred             H-HHHHHH-HHHHHhCCCCcEEEeCcchHH---H-HHHHHHHhhCC-----ceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence            3 333333 566677899999999987442   2 33344322111     2233454322          267778999


Q ss_pred             EcCCCCCCcHHH
Q 016162          317 VVPHIASASKWT  328 (394)
Q Consensus       317 lTPHia~~t~~~  328 (394)
                      +||+-. .+.++
T Consensus       137 l~p~~~-~~~~~  147 (279)
T PRK07417        137 LTPTEN-TDLNA  147 (279)
T ss_pred             EccCCC-CCHHH
Confidence            999754 34443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.92  E-value=8.6e-09  Score=100.83  Aligned_cols=110  Identities=19%  Similarity=0.270  Sum_probs=84.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH---hcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l  242 (394)
                      ++|||||+|.||..+|+.| ...|.+|.+|||+++... ..        ...+..     ...+++++   +..+|+|++
T Consensus         1 M~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~~-~l--------~~~g~~-----~~~s~~~~~~~~~~~dvIi~   65 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAVK-AM--------KEDRTT-----GVANLRELSQRLSAPRVVWV   65 (298)
T ss_pred             CEEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHHH-HH--------HHcCCc-----ccCCHHHHHhhcCCCCEEEE
Confidence            3799999999999999998 577999999999986532 21        111211     12455554   456899999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      |+|.. .+..++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus        66 ~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        66 MVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             EcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            99976 777777 5677888999999999999989999999988876554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.91  E-value=1.4e-08  Score=104.39  Aligned_cols=134  Identities=18%  Similarity=0.268  Sum_probs=93.5

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+||| +|.||+++|+.+ +..|.+|++||++.....+ ...       ..|.     ....++.+.+.+||+|++|+
T Consensus         1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~~-~a~-------~~gv-----~~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGKE-VAK-------ELGV-----EYANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHHH-HHH-------HcCC-----eeccCHHHHhccCCEEEEec
Confidence            3799997 999999999997 6889999999998654211 111       1121     12357888899999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CCCccccCCceEEcCCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI  321 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~--~~~~L~~~~nvilTPHi  321 (394)
                      |. ..+..++ ++....+++++++++++..+....+++.+.+..      +..+....|.  +..+++....+++||+-
T Consensus        67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~------~~~~V~~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE------GVEILPTHPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC------CCEEEEcCCCCCCCCcccCCCEEEEecCC
Confidence            95 3455555 556677899999999998554444455544432      2234445676  33467788899999974

>PLN02858 fructose-bisphosphate aldolase

Probab=98.90  E-value=6.6e-09  Score=119.51  Aligned_cols=120  Identities=14%  Similarity=0.137  Sum_probs=95.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ..++||+||+|.||..||++| ..-|.+|++||+++.... .+        ...|.     ....++.|+.+.||+|++|
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~~-~l--------~~~Ga-----~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLME-KF--------CELGG-----HRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HH--------HHcCC-----eecCCHHHHHhcCCEEEEE
Confidence            356899999999999999998 577999999999876532 21        11222     2357899999999999999


Q ss_pred             CCCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec
Q 016162          244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (394)
Q Consensus       244 lPlt~~t~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV  298 (394)
                      +|..+..+.++  ....++.+++|.++||+|+..+-....+.+.+.+..-....+|.
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            99888888876  34678889999999999999999999999998875411335663

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.88  E-value=2.6e-08  Score=99.95  Aligned_cols=144  Identities=17%  Similarity=0.121  Sum_probs=88.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|+|||+|.||+++|+.+ +..|.+|.+|++++.......  .     ...+.   ......++++++++||+|++|+|
T Consensus         1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~--a-----~~~~~---~~~~~~~~~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR--A-----LGFGV---IDELAADLQRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH--H-----hcCCC---CcccccCHHHHhcCCCEEEEeCC
Confidence            4799999999999999998 677887777776654321110  0     00111   11123578888999999999999


Q ss_pred             CChhhhhcccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----------CccccCCc
Q 016162          246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN  314 (394)
Q Consensus       246 lt~~t~~li~~~~l~-~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~----------~~L~~~~n  314 (394)
                      . ..+..++ ++... .++++++++|++.-+.-..+++.+.+.. ..     .+....|.+.          ..|+....
T Consensus        70 ~-~~~~~vl-~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~-----~~ig~HPMaG~e~sG~~aa~~~lf~g~~  141 (359)
T PRK06545         70 V-DATAALL-AELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LI-----RFVGGHPMAGSHKSGVAAARADLFENAP  141 (359)
T ss_pred             H-HHHHHHH-HHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CC-----eEEeeCCcCcCchhhHHHhcHHHHCCCc
Confidence            5 4556665 33333 4789999999987654222333222111 11     2223356543          24777788


Q ss_pred             eEEcCCCCCCcHHHH
Q 016162          315 AIVVPHIASASKWTR  329 (394)
Q Consensus       315 vilTPHia~~t~~~~  329 (394)
                      +++||+-. .+.+..
T Consensus       142 ~il~~~~~-~~~~~~  155 (359)
T PRK06545        142 WVLTPDDH-TDPDAV  155 (359)
T ss_pred             EEEecCCC-CCHHHH
Confidence            99999743 344443

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.88  E-value=3.9e-08  Score=98.73  Aligned_cols=122  Identities=18%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      +.-.||+|||+ |.||+++|+.|++.+|.+|++||+...                         ...++++.+++||+|+
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi   56 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLI   56 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence            34579999999 999999999984456999999998421                         1246788899999999


Q ss_pred             EcCCCChhhhhcccHHHH---hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC---CccccCCce
Q 016162          242 LHPVLDKTTYHLINKERL---ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---PGLSEMKNA  315 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l---~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~---~~L~~~~nv  315 (394)
                      +|+|- ..+..++. +..   ..++++++++|++.=+-    .+++++....     .++...+|..-   +.+++..++
T Consensus        57 lavPv-~~~~~~l~-~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~  125 (370)
T PRK08818         57 FSAPI-RHTAALIE-EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVM  125 (370)
T ss_pred             EeCCH-HHHHHHHH-HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeE
Confidence            99993 34455543 222   34899999999987442    2233332221     24667788743   468888899


Q ss_pred             EEcCC
Q 016162          316 IVVPH  320 (394)
Q Consensus       316 ilTPH  320 (394)
                      ++||.
T Consensus       126 iltp~  130 (370)
T PRK08818        126 VVCEA  130 (370)
T ss_pred             EEeCC
Confidence            99996

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.86  E-value=7.4e-09  Score=99.21  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=95.3

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ...++||+||+|.||..+++.| ...|.+|++|||+..+..+ +        .+.|     .....++.|+.+.||+|+.
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~~~-f--------~~~G-----a~v~~sPaeVae~sDvvit   97 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKCKE-F--------QEAG-----ARVANSPAEVAEDSDVVIT   97 (327)
T ss_pred             cccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHHHH-H--------HHhc-----hhhhCCHHHHHhhcCEEEE
Confidence            4578999999999999999998 6889999999999876422 1        1223     2345789999999999999


Q ss_pred             cCCCChhhhhccc--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162          243 HPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (394)
Q Consensus       243 ~lPlt~~t~~li~--~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalD  297 (394)
                      ++|...+.+.++.  ...|+..++|... |+.++-+..-...|.++++...  +-.+|
T Consensus        98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~--~~~vD  153 (327)
T KOG0409|consen   98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG--GRFVD  153 (327)
T ss_pred             EcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC--CeEEe
Confidence            9998888888774  3578888888888 8999988888889999998764  44555

>PLN02858 fructose-bisphosphate aldolase

Probab=98.86  E-value=1e-08  Score=117.90  Aligned_cols=109  Identities=20%  Similarity=0.293  Sum_probs=89.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .++|||||+|.||..||++| ...|.+|++||+++.... .+        ...|.     ....++.+++++||+|++|+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~l--------~~~Ga-----~~~~s~~e~~~~aDvVi~~V  388 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTLV-RF--------ENAGG-----LAGNSPAEVAKDVDVLVIMV  388 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HH--------HHcCC-----eecCCHHHHHhcCCEEEEec
Confidence            47899999999999999998 688999999999875532 11        11221     12468899999999999999


Q ss_pred             CCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       245 Plt~~t~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      |...+++.++  +...++.+++|.++||+++..+-..+.+.+.+.+
T Consensus       389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~  434 (1378)
T PLN02858        389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN  434 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence            9888888887  3467888999999999999999888999998887

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.86  E-value=1.8e-08  Score=104.31  Aligned_cols=125  Identities=22%  Similarity=0.264  Sum_probs=92.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh---cccCEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH  243 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l~  243 (394)
                      .|||||+|.||+.+|++| ..-|.+|.+|||+++... ...+.+     ..+   .......++++++   +.+|+|++|
T Consensus         1 ~IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~~-~l~~~~-----~~g---~~~~~~~s~~e~v~~l~~~dvIil~   70 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKTD-EFLAEH-----AKG---KKIVGAYSIEEFVQSLERPRKIMLM   70 (467)
T ss_pred             CEEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHHH-HHHhhc-----cCC---CCceecCCHHHHHhhcCCCCEEEEE
Confidence            389999999999999998 577999999999986532 221110     001   0112245677766   468999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~E  302 (394)
                      +|..+.+..++ ++.+..+++|.++||+++...-|+..+.+.+.+..+.....=|.-.+
T Consensus        71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~  128 (467)
T TIGR00873        71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE  128 (467)
T ss_pred             CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence            99877788877 56778899999999999999999999999998776655444455444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.85  E-value=8.5e-08  Score=92.73  Aligned_cols=171  Identities=16%  Similarity=0.193  Sum_probs=111.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+++....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. +++..+-.  |=       +|.+--
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~  124 (285)
T PRK14189         55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KD-------VDGFHV  124 (285)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCCh
Confidence            34456788887766654 357788776663     24689999865  345543 44444332  31       222210


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH-HHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA  181 (394)
                      .   ..|-...+.+ .....++.-++-++    +                     +.+.++.||++.|||.|.+ |+.+|
T Consensus       125 ~---n~g~l~~~~~-~~~PcTp~aii~lL----~---------------------~~~i~l~Gk~vvViGrs~iVGkPla  175 (285)
T PRK14189        125 A---NAGALMTGQP-LFRPCTPYGVMKML----E---------------------SIGIPLRGAHAVVIGRSNIVGKPMA  175 (285)
T ss_pred             h---hhhHhhCCCC-CCcCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence            0   0111111222 23445555554333    1                     1235899999999999999 99999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ...|++|+++...                            ..++.+.+++||+|++++|    +.++|+.   ..
T Consensus       176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~  219 (285)
T PRK14189        176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM  219 (285)
T ss_pred             HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence            998 6899999876432                            1478899999999999998    3567887   45


Q ss_pred             CCCCcEEEEcCCCcc
Q 016162          262 MKKEAILVNCSRGPV  276 (394)
Q Consensus       262 mk~gailIN~aRG~~  276 (394)
                      +|+|+++||++.-.+
T Consensus       220 ik~gavVIDVGin~~  234 (285)
T PRK14189        220 VKPGATVIDVGMNRD  234 (285)
T ss_pred             cCCCCEEEEcccccc
Confidence            689999999986543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.84  E-value=1.4e-07  Score=91.77  Aligned_cols=169  Identities=20%  Similarity=0.214  Sum_probs=108.3

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccchh
Q 016162           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (394)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~~  103 (394)
                      ..++.|.+.+....++ ..+++|+.+.+.     +..|+|++..+  ..+++. +++..+-.  |=|-    |+....+-
T Consensus        57 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g  129 (301)
T PRK14194         57 RAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDVD----GFHSENVG  129 (301)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hccC----ccChhhhh
Confidence            3455688877666554 357788777663     25689999865  345543 34443322  2110    11111111


Q ss_pred             HHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hHHHHHHH
Q 016162          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (394)
Q Consensus       104 ~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (394)
                      ..      ..+-+ .....++.-++.++-                         +.+.+++||+|+|||.| .||+.+|.
T Consensus       130 ~l------~~~~~-~~~PcTp~aii~lL~-------------------------~~~i~l~Gk~V~vIG~s~ivG~PmA~  177 (301)
T PRK14194        130 GL------SQGRD-VLTPCTPSGCLRLLE-------------------------DTCGDLTGKHAVVIGRSNIVGKPMAA  177 (301)
T ss_pred             HH------hcCCC-CCCCCcHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCccHHHHHH
Confidence            11      11112 234455555554331                         12458999999999996 99999999


Q ss_pred             HHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcC
Q 016162          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (394)
Q Consensus       183 ~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~m  262 (394)
                      +| ..-|++|++|+++.                            .++.++.++||+|+++++..    +++.+..   +
T Consensus       178 ~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---i  221 (301)
T PRK14194        178 LL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---L  221 (301)
T ss_pred             HH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---c
Confidence            98 67899999997642                            36889999999999999843    3455554   7


Q ss_pred             CCCcEEEEcCCCc
Q 016162          263 KKEAILVNCSRGP  275 (394)
Q Consensus       263 k~gailIN~aRG~  275 (394)
                      |+|+++||+|...
T Consensus       222 k~GaiVIDvgin~  234 (301)
T PRK14194        222 KPGAVVIDVGINR  234 (301)
T ss_pred             cCCcEEEEecccc
Confidence            9999999998644

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.83  E-value=1.4e-07  Score=91.77  Aligned_cols=128  Identities=15%  Similarity=0.125  Sum_probs=83.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhh---hhhhhcCCCCc--------cccccCCHHHHh
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANGEQPV--------TWKRASSMDEVL  234 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~l~ell  234 (394)
                      ++|+|||.|.||..+|..+ ...|.+|++||++++... ...+...   ....+.+....        ......++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQLE-SAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            5899999999999999998 467999999999876522 1111000   00000111000        012245788999


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalDV~  299 (394)
                      ++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+   ..+.+.++. .-+..++..|
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            9999999999977766555445566778999877 78877444   556655542 2345677766

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.83  E-value=1.3e-08  Score=99.44  Aligned_cols=103  Identities=30%  Similarity=0.427  Sum_probs=88.2

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      -+.||++.|.|||.+|+.+|.++ ++.|++|++.+-.+-..+++.++.|               ....++|....+|+++
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi  269 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV  269 (420)
T ss_pred             eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence            57999999999999999999997 8999999999988877777766543               3467899999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~  284 (394)
                      .++    .++++|..+.|..||+|+++-|.+.-.+ ||-..|-+
T Consensus       270 T~T----GnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         270 TAT----GNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             Ecc----CCcCccCHHHHHhccCCeEEecccccceeccHHHHHH
Confidence            886    4688999999999999999999997665 66666553

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.82  E-value=1.3e-08  Score=99.01  Aligned_cols=111  Identities=21%  Similarity=0.221  Sum_probs=85.1

Q ss_pred             EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~  249 (394)
                      |||+|.||..+|+.| ...|.+|++|||+......         +...|.     ....++.+++++||+|++|+|....
T Consensus         1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~~~---------l~~~g~-----~~~~s~~~~~~~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAVEE---------AVAAGA-----QAAASPAEAAEGADRVITMLPAGQH   65 (288)
T ss_pred             CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHHHH---------HHHcCC-----eecCCHHHHHhcCCEEEEeCCChHH
Confidence            689999999999998 5779999999998765321         111221     2345889999999999999997677


Q ss_pred             hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162          250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (394)
Q Consensus       250 t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD  297 (394)
                      ...++.  ...+..+++|.++||++...+-..+.+.+.+++..+.  .+|
T Consensus        66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            777663  4566789999999999988877778888888765443  355

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.82  E-value=5.4e-08  Score=95.50  Aligned_cols=144  Identities=19%  Similarity=0.212  Sum_probs=89.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ..++|+|||+|.||+.+|+.+ +..|  .+|++||++...... .        ...|..   .....++++.+++||+|+
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~-a--------~~~g~~---~~~~~~~~~~~~~aDvVi   71 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETRAR-A--------RELGLG---DRVTTSAAEAVKGADLVI   71 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHH-H--------HhCCCC---ceecCCHHHHhcCCCEEE
Confidence            346899999999999999997 5556  489999998754211 1        111211   112346788899999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----------Ccccc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSE  311 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~----------~~L~~  311 (394)
                      +|+|.. .+..++ ++....++++.++++++....    .+++++.... . ....+....|...          .+|+.
T Consensus        72 iavp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k~----~~~~~~~~~~-~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~  143 (307)
T PRK07502         72 LCVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVKA----SVIAAMAPHL-P-EGVHFIPGHPLAGTEHSGPDAGFAELFE  143 (307)
T ss_pred             ECCCHH-HHHHHH-HHHHhhCCCCCEEEeCccchH----HHHHHHHHhC-C-CCCeEEeCCCCCCCcccchhhcCHHHHC
Confidence            999943 333333 455567899999999976442    2333333221 1 1122334445421          25777


Q ss_pred             CCceEEcCCCCCCcHHHH
Q 016162          312 MKNAIVVPHIASASKWTR  329 (394)
Q Consensus       312 ~~nvilTPHia~~t~~~~  329 (394)
                      ..++++||+-+ .+.++.
T Consensus       144 g~~~~l~~~~~-~~~~~~  160 (307)
T PRK07502        144 NRWCILTPPEG-TDPAAV  160 (307)
T ss_pred             CCeEEEeCCCC-CCHHHH
Confidence            77899999744 344443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.81  E-value=9.1e-08  Score=94.49  Aligned_cols=131  Identities=17%  Similarity=0.195  Sum_probs=90.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCC----CccccccCCHHHHhcccCE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~aDi  239 (394)
                      ++|||||.|.||..+|..+ ...|++|++||+++.....  .......+.+...+..    ........++++.++.||+
T Consensus         8 ~~VaVIGaG~MG~giA~~~-a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARA-LAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            6899999999999999997 4789999999998764211  1111111112222110    0112334689999999999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      |+-|+|-+.+.+.-+-++..+.++++++| .+++. .+...++.+.++. .-+..++-.|.
T Consensus        87 ViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~-p~R~~g~Hffn  144 (321)
T PRK07066         87 IQESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH-PERCVVGHPFN  144 (321)
T ss_pred             EEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC-cccEEEEecCC
Confidence            99999999998887778888999999854 44443 3466777877754 34566666553

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.80  E-value=2.1e-08  Score=98.72  Aligned_cols=98  Identities=26%  Similarity=0.259  Sum_probs=70.0

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      |+||+|||||+|+||+++|+.| +.+|++|+++++......+..        ...|.     . ..+..+++++||+|++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a--------~~~Gv-----~-~~s~~ea~~~ADiVvL   65 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKA--------TEDGF-----K-VGTVEEAIPQADLIMN   65 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHH--------HHCCC-----E-ECCHHHHHhcCCEEEE
Confidence            5799999999999999999998 688998877655433222211        11121     1 2468889999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v  277 (394)
                      ++|... ....+.++....++++. +|.++.|-.+
T Consensus        66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence            999432 34445566778888886 8888887654

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.80  E-value=8.2e-08  Score=92.96  Aligned_cols=136  Identities=24%  Similarity=0.270  Sum_probs=89.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEE--EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HHHhcccCEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS  241 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~  241 (394)
                      -++|+|+|+|.||+++|+.+ +.-|..|  +++|++.......            ...++......+. .+.+..||+|+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence            46899999999999999997 6777765  5556655432221            1112222222233 67788899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----ccccCCceEE
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----GLSEMKNAIV  317 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~----~L~~~~nvil  317 (394)
                      +++|- ..|..++ ++....+|+|++++|++.-+-    ..+++++.- ..+-. .+..-+|+.-+    +++....+|+
T Consensus        70 vavPi-~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~----~v~~a~~~~-~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vl  141 (279)
T COG0287          70 VAVPI-EATEEVL-KELAPHLKKGAIVTDVGSVKS----SVVEAMEKY-LPGDV-RFVGGHPMFGPEADAGLFENAVVVL  141 (279)
T ss_pred             EeccH-HHHHHHH-HHhcccCCCCCEEEecccccH----HHHHHHHHh-ccCCC-eeEecCCCCCCcccccccCCCEEEE
Confidence            99993 4455554 455558999999999987443    234444432 12222 56677887543    7999899999


Q ss_pred             cCCC
Q 016162          318 VPHI  321 (394)
Q Consensus       318 TPHi  321 (394)
                      ||.=
T Consensus       142 tp~~  145 (279)
T COG0287         142 TPSE  145 (279)
T ss_pred             cCCC
Confidence            9963

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.79  E-value=1.9e-07  Score=91.06  Aligned_cols=117  Identities=25%  Similarity=0.245  Sum_probs=77.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC-------cc-ccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP-------VT-WKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~  235 (394)
                      ++|||||+|.||..+|+.+ ...|++|++||++.......  ..+...+.+...+...       .. .....+. +.++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~   82 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR   82 (295)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence            5899999999999999998 57799999999987653210  0000001111111100       00 0112344 5689


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~  287 (394)
                      .||+|+.|+|.+++.+..+-.+....++++++|+ |+|.-.   ...+.+.+.
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            9999999999999988877777777899999886 776643   445666554

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.77  E-value=4.2e-07  Score=88.34  Aligned_cols=155  Identities=14%  Similarity=0.100  Sum_probs=95.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC---------ccccccCCHHHHh
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP---------VTWKRASSMDEVL  234 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~l~ell  234 (394)
                      ++|+|||.|.||..+|..+ ...|.+|+.||++.......  ..+.........+...         .......++++.+
T Consensus         4 ~kIaViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQT-AFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            5899999999999999997 46699999999987542111  1000000011111100         0112346888889


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCc
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~n  314 (394)
                      +.||+|+.|+|...+.+.-+-++..+.++++++|+..+.+  +....+.+.+... -+..++..|       .|.+.++.
T Consensus        83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf~-------~p~~~~~l  152 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHFA-------NEIWKNNT  152 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcCC-------CCCCcCCe
Confidence            9999999999966555544445566778999988543332  3445667666532 234554332       24556688


Q ss_pred             eEEcCCCCCCcHHHHHHH
Q 016162          315 AIVVPHIASASKWTREGM  332 (394)
Q Consensus       315 vilTPHia~~t~~~~~~~  332 (394)
                      |.+.|+- .++.++.+.+
T Consensus       153 vevv~~~-~t~~~~~~~~  169 (287)
T PRK08293        153 AEIMGHP-GTDPEVFDTV  169 (287)
T ss_pred             EEEeCCC-CCCHHHHHHH
Confidence            8888874 3455554443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.72  E-value=2.3e-07  Score=93.61  Aligned_cols=149  Identities=13%  Similarity=0.146  Sum_probs=94.9

Q ss_pred             CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcC
Q 016162          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL  197 (394)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~  197 (394)
                      .....++-.+-.++..+|++.+      ..    |.+.    .....++|+||| +|.||+++|+.+ +..|..|++||+
T Consensus        66 l~~~~~~~i~~~i~~~s~~~q~------~~----~~~~----~~~~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~  130 (374)
T PRK11199         66 VPPDLIEDVLRRVMRESYSSEN------DK----GFKT----LNPDLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQ  130 (374)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhH------Hh----cccc----cCcccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCC
Confidence            3445566677777777764421      11    2111    122458999999 999999999998 677999999997


Q ss_pred             chhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162          198 YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v  277 (394)
                      ...                           .++++++++||+|++|+|.. .+..++ ++... +++|+++++++.-+..
T Consensus       131 ~~~---------------------------~~~~~~~~~aDlVilavP~~-~~~~~~-~~l~~-l~~~~iv~Dv~SvK~~  180 (374)
T PRK11199        131 DDW---------------------------DRAEDILADAGMVIVSVPIH-LTEEVI-ARLPP-LPEDCILVDLTSVKNA  180 (374)
T ss_pred             Ccc---------------------------hhHHHHHhcCCEEEEeCcHH-HHHHHH-HHHhC-CCCCcEEEECCCccHH
Confidence            421                           25567889999999999954 345555 33344 8999999999775432


Q ss_pred             CHHHHHHHHHcCCcceEEeeccCCCCCCCC--ccccCCceEEcCC
Q 016162          278 DEVALVEHLKQNPMFRVGLDVFEDEPYMKP--GLSEMKNAIVVPH  320 (394)
Q Consensus       278 de~aL~~aL~~g~l~gaalDV~~~EP~~~~--~L~~~~nvilTPH  320 (394)
                      -.+++.+.+.     +   .+....|...+  ..+....++++|+
T Consensus       181 ~~~~~~~~~~-----~---~fvg~HPm~G~~~~~~~~~~vv~~~~  217 (374)
T PRK11199        181 PLQAMLAAHS-----G---PVLGLHPMFGPDVGSLAKQVVVVCDG  217 (374)
T ss_pred             HHHHHHHhCC-----C---CEEeeCCCCCCCCcccCCCEEEEcCC
Confidence            2233332211     1   23445665332  2344455777774

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.72  E-value=3.7e-07  Score=88.29  Aligned_cols=170  Identities=19%  Similarity=0.252  Sum_probs=109.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++. .+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |=       +|.+--
T Consensus        55 k~~~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KD-------VDGl~~  124 (284)
T PRK14179         55 RSALAAGFKSEVVRLPET-ISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KD-------VDGFHP  124 (284)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCH
Confidence            344567888877666543 57787776663     24689999865  344443 33333322  31       222210


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChHHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA  181 (394)
                      .   ..|-...+.++ ....++.-++.++-                         +.+.++.||+++|||. |.+|+.+|
T Consensus       125 ~---N~g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~v~vIG~S~ivG~Pla  175 (284)
T PRK14179        125 M---NTGHLWSGRPV-MIPCTPAGIMEMFR-------------------------EYNVELEGKHAVVIGRSNIVGKPMA  175 (284)
T ss_pred             h---hHHHHhCCCCC-CcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcCcHHHH
Confidence            0   01111222232 45566666554431                         1245799999999999 99999999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      .+| ...|++|++|...                            ..++.+.+++||+|+.+++.    .+++....   
T Consensus       176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~----~~~v~~~~---  219 (284)
T PRK14179        176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGR----GHFVTKEF---  219 (284)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCc----cccCCHHH---
Confidence            998 5779999988321                            13788999999999999984    33455544   


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                      +|+|+++||+|--.
T Consensus       220 ik~GavVIDvgin~  233 (284)
T PRK14179        220 VKEGAVVIDVGMNR  233 (284)
T ss_pred             ccCCcEEEEeccee
Confidence            79999999998544

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.71  E-value=6.9e-07  Score=87.04  Aligned_cols=169  Identities=17%  Similarity=0.171  Sum_probs=107.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+++....++ ..+++|+.+.+.     ++.|+|++..+  ..+++ .++++.+-.  |       -+|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--K-------DVDGl~~  124 (296)
T PRK14188         55 KQTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--K-------DVDGLHV  124 (296)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--c-------ccccCCh
Confidence            34455688877665544 357788777663     14689999865  34554 344443322  2       1222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChHHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA  181 (394)
                      .   ..|-...+.+ .....++.-++.++=                         +.+.++.||+++||| .|.+|+.+|
T Consensus       125 ~---n~g~l~~~~~-~~~PcTp~ai~~ll~-------------------------~~~i~~~Gk~V~viGrs~~mG~PmA  175 (296)
T PRK14188        125 V---NAGRLATGET-ALVPCTPLGCMMLLR-------------------------RVHGDLSGLNAVVIGRSNLVGKPMA  175 (296)
T ss_pred             h---hHHHHhCCCC-CCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEEcCCcchHHHHH
Confidence            0   0111111222 244555655554331                         123479999999999 999999999


Q ss_pred             HHHHhcCCcEEEEEc-CchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162          182 RMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (394)
Q Consensus       182 ~~la~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~  260 (394)
                      ++| ..-|+.|++|+ ++                             .++++++++||+|+++++...    ++.+..  
T Consensus       176 ~~L-~~~g~tVtv~~~rT-----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~--  219 (296)
T PRK14188        176 QLL-LAANATVTIAHSRT-----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW--  219 (296)
T ss_pred             HHH-HhCCCEEEEECCCC-----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe--
Confidence            998 57799999995 32                             257788999999999998533    454443  


Q ss_pred             cCCCCcEEEEcCCCc
Q 016162          261 TMKKEAILVNCSRGP  275 (394)
Q Consensus       261 ~mk~gailIN~aRG~  275 (394)
                       +|+|+++||++--.
T Consensus       220 -lk~GavVIDvGin~  233 (296)
T PRK14188        220 -IKPGATVIDVGINR  233 (296)
T ss_pred             -ecCCCEEEEcCCcc
Confidence             79999999998644

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.71  E-value=6.2e-08  Score=78.21  Aligned_cols=92  Identities=26%  Similarity=0.357  Sum_probs=62.4

Q ss_pred             eEEEEecChHHHHHHHHHHhcCC---cEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ||||||+|+||+.+++.+ ...|   .+|+ +++|+++... ++.+.|       +   ... ...+..|++++||+|++
T Consensus         1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~~-~~~~~~-------~---~~~-~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKAA-ELAKEY-------G---VQA-TADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHHH-HHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHHH-HHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence            699999999999999998 6778   8999 5588886532 222222       1   111 12378899999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |+|  |....-+-.+. ....++.++|++.-|
T Consensus        68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence            999  43332232333 556789999998654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.71  E-value=1.5e-07  Score=96.49  Aligned_cols=139  Identities=14%  Similarity=0.122  Sum_probs=90.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC-----------ccccccCCHHHHh
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----------VTWKRASSMDEVL  234 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~ell  234 (394)
                      .+|||||+|.||..+|..++ . |.+|++||++..+. +...         .|..+           .+...+.+..+.+
T Consensus         7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l~---------~G~~~~~e~~~~~l~~~g~l~~t~~~~~~   74 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LELK---------NGVDVNLETTEEELREARYLKFTSEIEKI   74 (425)
T ss_pred             CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHHH---------CcCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence            68999999999999999974 3 68999999987652 2211         12110           0001122334568


Q ss_pred             cccCEEEEcCCCC------hhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCcceEEe-eccCCC
Q 016162          235 READVISLHPVLD------KTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRVGL-DVFEDE  302 (394)
Q Consensus       235 ~~aDiV~l~lPlt------~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL-~~--g~l~gaal-DV~~~E  302 (394)
                      ++||++++|+|..      ++...++.  +...+.+++|.++|+.|+-.+-..+.++..+ ++  |...+-.. =+|.+|
T Consensus        75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE  154 (425)
T PRK15182         75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE  154 (425)
T ss_pred             cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence            9999999999954      23345542  4556889999999999998888888765544 33  32111111 136668


Q ss_pred             CCCC----CccccCCceE
Q 016162          303 PYMK----PGLSEMKNAI  316 (394)
Q Consensus       303 P~~~----~~L~~~~nvi  316 (394)
                      |+..    ..+...|.++
T Consensus       155 ~v~~G~a~~~~~~~~riv  172 (425)
T PRK15182        155 RINPGDKKHRLTNIKKIT  172 (425)
T ss_pred             cCCCCcccccccCCCeEE
Confidence            8743    2466777775

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.70  E-value=3.8e-07  Score=84.26  Aligned_cols=110  Identities=20%  Similarity=0.316  Sum_probs=79.3

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccC
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EAD  238 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aD  238 (394)
                      +.+++||+++|+|+|+||+.+|+.| ..+|++|+++|++.... ..+.+.|       +     .. ..+.++++. +||
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~-~v~~~~l~~~~~D   87 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----AT-VVAPEEIYSVDAD   87 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CE-EEcchhhccccCC
Confidence            3579999999999999999999998 78999999999986532 2222211       1     11 123456654 799


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +++.|..     .++|+++.+..|+ ..+++..+.+.+-| ..-.+.|++..+
T Consensus        88 v~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi  133 (200)
T cd01075          88 VFAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGI  133 (200)
T ss_pred             EEEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCC
Confidence            9987765     4688999999997 45888888888766 334555665543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.70  E-value=5e-08  Score=95.83  Aligned_cols=83  Identities=24%  Similarity=0.330  Sum_probs=67.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+++|||||+|.+|+.+|++| ...|.+|.+|+|+..                           .+++++++++|+|+++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            357899999999999999998 688999999998642                           3678889999999999


Q ss_pred             CCCChhhhhcccHHHHh-cCCCCcEEEEcCCCcc
Q 016162          244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~-~mk~gailIN~aRG~~  276 (394)
                      +|. .....+++. ... .+++++++|++++|-.
T Consensus        55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi~   86 (308)
T PRK14619         55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGLD   86 (308)
T ss_pred             CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCccc
Confidence            996 567776633 223 4789999999988543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.70  E-value=2.1e-07  Score=95.18  Aligned_cols=109  Identities=23%  Similarity=0.236  Sum_probs=75.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH------------
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------  233 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------  233 (394)
                      ++|+|||+|.||..+|..| ...|.+|++||+++.... ..        + .|..+.   ....++++            
T Consensus         4 ~kI~VIGlG~~G~~~A~~L-a~~G~~V~~~D~~~~~v~-~l--------~-~g~~~~---~e~~l~~~l~~~~~~g~l~~   69 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAF-ASRQKQVIGVDINQHAVD-TI--------N-RGEIHI---VEPDLDMVVKTAVEGGYLRA   69 (415)
T ss_pred             cEEEEECcchhhHHHHHHH-HhCCCEEEEEeCCHHHHH-HH--------H-CCCCCc---CCCCHHHHHHHHhhcCceee
Confidence            6899999999999999998 577999999999876532 11        1 111111   01233333            


Q ss_pred             ---hcccCEEEEcCCCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       234 ---l~~aDiV~l~lPlt------~~t~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                         ++.||+|++|+|..      ++...+.  -+.....+++|+++|+.|+-.+--.+.+...+.+
T Consensus        70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence               34799999999953      1222222  2456677899999999999887778888776765

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.67  E-value=7.9e-07  Score=86.57  Aligned_cols=128  Identities=21%  Similarity=0.236  Sum_probs=80.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhh---hhhhcCCCC--------ccccccCCHHHHh
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ---FLKANGEQP--------VTWKRASSMDEVL  234 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~l~ell  234 (394)
                      ++|+|||.|.||..+|..+ ...|.+|++||++...... ..+.+..   .....+...        .......+++ .+
T Consensus         5 ~kI~vIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   81 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVC-ALAGYDVLLNDVSADRLEA-GLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL   81 (292)
T ss_pred             CEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence            5899999999999999998 4679999999998764321 1111000   000112111        0012235665 47


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      ++||+|+.|+|...+.+..+-.+..+.++++++++ |+|.-.   ...|.+.+... -+..++..+.
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~  144 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN  144 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence            89999999999776655544456667789999998 665533   34677665432 2345666555

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.67  E-value=7.9e-07  Score=86.16  Aligned_cols=170  Identities=18%  Similarity=0.273  Sum_probs=109.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++. .+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |=|-    |+....+
T Consensus        55 k~a~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  127 (286)
T PRK14175         55 KAAEKIGMISEIVHLEET-ATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDVD----GFHPINI  127 (286)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCCccch
Confidence            334556888877666543 47777776663     24689999865  345543 44444332  3111    1111111


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                            |-...+.++ ....++.-++.++-                         +.+.+++||++.|||.|. +|+.+|
T Consensus       128 ------g~l~~~~~~-~~PcTp~ai~~ll~-------------------------~~~i~l~Gk~vvVIGrs~~VG~pla  175 (286)
T PRK14175        128 ------GKLYIDEQT-FVPCTPLGIMEILK-------------------------HADIDLEGKNAVVIGRSHIVGQPVS  175 (286)
T ss_pred             ------HhHhcCCCC-CCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCchhHHHHH
Confidence                  111112222 34445555544332                         123479999999999999 999999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ...|++|+.++++.                            .++.+.+++||+|+.+++.    .++|.++.   
T Consensus       176 ~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~---  219 (286)
T PRK14175        176 KLL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV---  219 (286)
T ss_pred             HHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence            998 68999999887531                            3678889999999999983    44677765   


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                      +|+|+++||++-..
T Consensus       220 vk~gavVIDvGi~~  233 (286)
T PRK14175        220 VKEGAVIIDVGNTP  233 (286)
T ss_pred             cCCCcEEEEcCCCc
Confidence            58999999998644

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.66  E-value=7.2e-08  Score=85.26  Aligned_cols=96  Identities=31%  Similarity=0.350  Sum_probs=64.5

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      |+||||.|||||..|..-|..| +.-|.+|++-.+..+...+.        .+..|     + ...+++|.+++||+|++
T Consensus         2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~--------A~~~G-----f-~v~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEK--------AKADG-----F-EVMSVAEAVKKADVVML   66 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHH--------HHHTT-------ECCEHHHHHHC-SEEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHH--------HHHCC-----C-eeccHHHHHhhCCEEEE
Confidence            5799999999999999999998 78899999887766532211        12222     2 24689999999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      .+|. .....++.++....||+|+.|+ .+.|-
T Consensus        67 L~PD-~~q~~vy~~~I~p~l~~G~~L~-fahGf   97 (165)
T PF07991_consen   67 LLPD-EVQPEVYEEEIAPNLKPGATLV-FAHGF   97 (165)
T ss_dssp             -S-H-HHHHHHHHHHHHHHS-TT-EEE-ESSSH
T ss_pred             eCCh-HHHHHHHHHHHHhhCCCCCEEE-eCCcc
Confidence            9993 3335566788888999998765 44543

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02712 arogenate dehydrogenase

Probab=98.65  E-value=1e-07  Score=102.78  Aligned_cols=137  Identities=15%  Similarity=0.171  Sum_probs=88.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  240 (394)
                      .-+.++|||||+|+||+.+|+.+ +.+|.+|++||++......          ...|.     ....++++++ .++|+|
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~A----------~~~Gv-----~~~~d~~e~~~~~aDvV  112 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLAA----------RSLGV-----SFFLDPHDLCERHPDVI  112 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH----------HHcCC-----EEeCCHHHHhhcCCCEE
Confidence            34456899999999999999998 6889999999997543211          11121     2245788866 569999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC-----ccccCCce
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNA  315 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~-----~L~~~~nv  315 (394)
                      ++|+|. ..+..++..-.+..++++++++|+++-+    ..+.++++...  .-..++..-.|+..+     .+-..+ +
T Consensus       113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK----~~~~~~l~~~l--~~~~~~v~~HPMaG~e~~~~g~~~~~-~  184 (667)
T PLN02712        113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK----EFAKNLLLDYL--PEDFDIICSHPMFGPQSAKHGWDGLR-F  184 (667)
T ss_pred             EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc----HHHHHHHHHhc--CCCCeEEeeCCcCCCccccchhccCc-E
Confidence            999994 4677777654456799999999997544    22333443221  112245566776422     122333 7


Q ss_pred             EEcCCCC
Q 016162          316 IVVPHIA  322 (394)
Q Consensus       316 ilTPHia  322 (394)
                      +++|.+.
T Consensus       185 ~~~~~~~  191 (667)
T PLN02712        185 VYEKVRI  191 (667)
T ss_pred             EEeeccC
Confidence            7777554

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.63  E-value=5.5e-08  Score=98.71  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=70.1

Q ss_pred             CCCCCcc-cc-cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCc------hhhHHHHHHHhhhhhhhhcCCCCcc
Q 016162          152 GWLPNLF-VG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVT  223 (394)
Q Consensus       152 ~w~~~~~-~g-~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~  223 (394)
                      -|.+..| .+ ..|+||||+|||+|++|+.-|..| +..|.+|.+--|.      ......         +...|     
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~k---------A~~dG-----   85 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK---------ATENG-----   85 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHH---------HHhcC-----
Confidence            3655544 22 569999999999999999665554 4556655522111      111100         01112     


Q ss_pred             ccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       224 ~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      + ...+++|++++||+|++.+|++ + ++.+.++.+..||+|++|. .|+|=
T Consensus        86 F-~v~~~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF  133 (487)
T PRK05225         86 F-KVGTYEELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF  133 (487)
T ss_pred             C-ccCCHHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence            2 2368999999999999999987 4 7777799999999999774 34443

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.63  E-value=1.3e-07  Score=95.40  Aligned_cols=103  Identities=18%  Similarity=0.354  Sum_probs=74.7

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+.++++.|+|.|.+|+.+++.+ +++|++|.++|++.... +.....++.      ..........++.+.++++|+|+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~g~------~v~~~~~~~~~l~~~l~~aDvVI  235 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEFGG------RIHTRYSNAYEIEDAVKRADLLI  235 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhcCc------eeEeccCCHHHHHHHHccCCEEE
Confidence            36788999999999999999996 89999999999986542 221111110      00000111235678889999999


Q ss_pred             EcCCCC-hhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       242 l~lPlt-~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .+++.+ ..+..+++++.++.||+++++||++
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            998542 2346689999999999999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.61  E-value=1.1e-06  Score=84.97  Aligned_cols=129  Identities=19%  Similarity=0.305  Sum_probs=80.5

Q ss_pred             eEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +|+|||+|.||+++|+.| ...|  .+|++||++.......         ...|..    ....+++++. +||+|++|+
T Consensus         2 ~I~iIG~G~mG~sla~~l-~~~g~~~~v~~~d~~~~~~~~~---------~~~g~~----~~~~~~~~~~-~aD~Vilav   66 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLAL-KEKGLISKVYGYDHNELHLKKA---------LELGLV----DEIVSFEELK-KCDVIFLAI   66 (275)
T ss_pred             EEEEEccCHHHHHHHHHH-HhcCCCCEEEEEcCCHHHHHHH---------HHCCCC----cccCCHHHHh-cCCEEEEeC
Confidence            799999999999999998 4445  5899999987542211         111211    0123667765 499999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-------C---CccccCCc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-------K---PGLSEMKN  314 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-------~---~~L~~~~n  314 (394)
                      |.. .+..++ .+... +++++++++++.-    ...+.+.+.+. ..+   .+....|..       .   ..|++-..
T Consensus        67 p~~-~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~~-~~~---~~v~~hPmaG~e~~Gp~~a~~~l~~g~~  135 (275)
T PRK08507         67 PVD-AIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPKH-IRK---NFIAAHPMAGTENSGPKAAIKGLYEGKV  135 (275)
T ss_pred             cHH-HHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHHh-cCC---CEEecCCcCcCchhhHHhccHHHhCCCe
Confidence            943 344444 44556 8899999997552    34455555543 111   233345542       1   13566567


Q ss_pred             eEEcCCC
Q 016162          315 AIVVPHI  321 (394)
Q Consensus       315 vilTPHi  321 (394)
                      ++++|.-
T Consensus       136 ~il~~~~  142 (275)
T PRK08507        136 VVLCDVE  142 (275)
T ss_pred             EEEecCC
Confidence            8888853

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.59  E-value=7.5e-07  Score=85.37  Aligned_cols=103  Identities=30%  Similarity=0.376  Sum_probs=72.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc----EEEEE-cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+|||||+|+||+.+++.| ..-|.    +|++| ||+.... +..        ...|     .....+..+++.+||+|
T Consensus         1 ~kI~~IG~G~mG~a~a~~L-~~~g~~~~~~i~v~~~r~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~aDvV   65 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGL-VASGVVPPSRISTADDSNPARR-DVF--------QSLG-----VKTAASNTEVVKSSDVI   65 (266)
T ss_pred             CeEEEECCcHHHHHHHHHH-HHCCCCCcceEEEEeCCCHHHH-HHH--------HHcC-----CEEeCChHHHHhcCCEE
Confidence            3799999999999999998 45566    88999 8876542 211        1112     12345788889999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                      ++|+| ......++ .+....++++.++|++.-|  +..+.+.+.+.
T Consensus        66 il~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         66 ILAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             EEEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            99997 45566666 3455667899999988665  35666665543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.59  E-value=2.7e-06  Score=82.87  Aligned_cols=130  Identities=17%  Similarity=0.227  Sum_probs=85.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCCc--------cccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPV--------TWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~  235 (394)
                      ++|||||.|.||..+|..++ ..|.+|+.||++++....  +......+.+.+.|....        ......++ +.++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~   83 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA   83 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence            48999999999999999974 679999999999876322  111111111222222110        11124577 4589


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~m-k~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      .||+|+-|+|-+.+.+.-+-...-+.+ ++++++++.+.+-.  ..++..++.. .-+..++..|.
T Consensus        84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~-~~r~~g~hf~~  146 (286)
T PRK07819         84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKR-PGRVLGLHFFN  146 (286)
T ss_pred             CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CccEEEEecCC
Confidence            999999999998888776655444545 89999988776554  4445555543 23456777665

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.58  E-value=2.3e-06  Score=82.87  Aligned_cols=129  Identities=22%  Similarity=0.278  Sum_probs=80.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH--HHhhhhhhhhcCCCCc--------cccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPV--------TWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~  235 (394)
                      ++|+|||.|.||..+|..+ ...|.+|++||+++.......  .+...+.+.+.+....        ......+.++ ++
T Consensus         4 ~kI~VIG~G~mG~~ia~~l-a~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~   81 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVC-AVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK   81 (282)
T ss_pred             cEEEEEccCHHHHHHHHHH-HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence            5899999999999999998 467999999999876532100  0000011112221110        1112345654 79


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~  299 (394)
                      +||+|+.|+|.+.+.+.-+-++..+.++++++++....|  +....|.+.+... -+..++..+
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~  142 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFF  142 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeecc
Confidence            999999999977776644445566778999988544444  5566788777533 234444433

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.56  E-value=1.8e-07  Score=89.63  Aligned_cols=95  Identities=23%  Similarity=0.438  Sum_probs=81.5

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      -+.||.+.|.|||.+|+..|+.| ++||+.|++....+-..+.+.++.|               ....++|..++.|+++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG~---------------~V~tm~ea~~e~difV  274 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEGY---------------EVTTLEEAIREVDIFV  274 (434)
T ss_pred             eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhcc---------------EeeeHHHhhhcCCEEE
Confidence            46899999999999999999998 8999999999888776666655544               3568999999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      .++    ..+.+|..+.|.+||+++++.|++.-.+
T Consensus       275 TtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  275 TTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             Ecc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence            775    4688899999999999999999987554

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.55  E-value=2.4e-06  Score=89.60  Aligned_cols=132  Identities=22%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCCc--------cccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPV--------TWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~  235 (394)
                      ++|||||.|.||+.+|..++ ..|.+|++||++++.....  ..+...+.+...|....        ......++++ +.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~   85 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA   85 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence            58999999999999999974 6699999999998753221  11111111122221100        1123457766 57


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP  303 (394)
                      +||+|+-++|.+.+.+..+-.+.-..+++++++ +|+|.-.+   ..|..++..- -+..++..|.+-|
T Consensus        86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~Pa~  150 (507)
T PRK08268         86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNPVP  150 (507)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCCcc
Confidence            999999999988888877655555667899999 59987555   4677666542 2457777776443

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.55  E-value=7e-06  Score=85.51  Aligned_cols=227  Identities=20%  Similarity=0.183  Sum_probs=121.4

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHHHH---h-----cCCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCcc
Q 016162           29 WINLLIEQDCRVEICTQKK--TILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYN   98 (394)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~~el~~~---~-----~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d   98 (394)
                      ..+.|.+.|+++.+.....  ...+.++..+.   +     -+++|.|+. ... .+++-++.+.. |--+|+...-..|
T Consensus        21 ~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlk-V~~-P~~~e~~~l~~-g~tli~~l~p~~n   97 (511)
T TIGR00561        21 TVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILK-VNA-PSDAEIAELPA-GKALVSFIWPAQN   97 (511)
T ss_pred             HHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEE-eCC-CCHHHHHhcCC-CCEEEEEcCccCC
Confidence            4567777788876654422  12333333320   0     013576652 222 23444666665 2244555444444


Q ss_pred             ccchhHHhhCCceEecCCCCC--c--------hhhHHHHHHHHHHHHhchHHHHHHHHcCcc-CCCCCCcccccccCCCe
Q 016162           99 NVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRAGLY-DGWLPNLFVGNLLKGQT  167 (394)
Q Consensus        99 ~id~~~a~~~gI~v~n~p~~~--~--------~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~-~~w~~~~~~g~~l~gkt  167 (394)
                      .=-++.+.++||.+..--..-  +        .++|+.+=      .|-...+.+.+  |++ .+-  .-..| .+.+.+
T Consensus        98 ~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~l--gr~~~g~--~taag-~vp~ak  166 (511)
T TIGR00561        98 PELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHEF--GRFFTGQ--ITAAG-KVPPAK  166 (511)
T ss_pred             HHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHHh--hhhcCCc--eecCC-CCCCCE
Confidence            334677788998887733211  1        12223222      11111111111  111 000  00112 355789


Q ss_pred             EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhh---h--hcCCCCccccccCC----------HHH
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---K--ANGEQPVTWKRASS----------MDE  232 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~----------l~e  232 (394)
                      +.|+|.|.+|...++.+ +++|++|+++|++... .+. .+.++...   +  ..+....++....+          +.+
T Consensus       167 VlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~r-le~-a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e  243 (511)
T TIGR00561       167 VLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEV-KEQ-VQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA  243 (511)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHH-HHH-HHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence            99999999999999985 8999999999998764 222 22222110   0  00000001111111          455


Q ss_pred             HhcccCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          233 VLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       233 ll~~aDiV~l~l--Plt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .++++|+|+.++  |..+ ...++.++.++.||+|+++||+|-
T Consensus       244 ~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       244 QAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence            678899998776  4322 246889999999999999999964

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.53  E-value=5e-07  Score=87.47  Aligned_cols=106  Identities=18%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      +++|||||+|+||+.+++.|. .-|    .+|+++||+.....+.+...|       +     .....+..+++.+||+|
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDvV   69 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANIL   69 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCEE
Confidence            468999999999999999984 444    689999987644333322222       1     12235788889999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                      ++|+|. ......+ .+....++++.++|++.-|-  ..+.|.+.+.
T Consensus        70 ilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~  112 (279)
T PRK07679         70 FLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ  112 (279)
T ss_pred             EEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence            999993 3444444 44455678899999986543  4556666553

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.52  E-value=7.4e-07  Score=97.49  Aligned_cols=138  Identities=17%  Similarity=0.154  Sum_probs=91.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||+|+||+.+++.+ +..|  .+|++||++.......         ...|..   .....++++.++++|+|++|
T Consensus         4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~a---------~~~g~~---~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLELA---------VSLGVI---DRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHHH---------HHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence            6899999999999999997 5666  5899999987542211         111211   11234688889999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCccccCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK  313 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~----------~~~L~~~~  313 (394)
                      +|.. ....++ ++....++++.++++++.-+..-.+.+.+.+..     ....+..+.|..          ++.|+...
T Consensus        71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~-----~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~  143 (735)
T PRK14806         71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE-----LPAGFVPGHPIAGSEKSGVHAANADLFRNH  143 (735)
T ss_pred             CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccc-----cCCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence            9943 344444 334456788999999987543223444444332     124455667753          12578888


Q ss_pred             ceEEcCCCCC
Q 016162          314 NAIVVPHIAS  323 (394)
Q Consensus       314 nvilTPHia~  323 (394)
                      ++++||+-.+
T Consensus       144 ~~~~~~~~~~  153 (735)
T PRK14806        144 KVILTPLAET  153 (735)
T ss_pred             eEEEECCCCC
Confidence            9999997543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.49  E-value=1.6e-06  Score=75.85  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=77.1

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++.+++++|+|.|.||+.+++.+ ...| .+|.++|++.... ++..+.+.       .... .....+++++++++|+|
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~~-------~~~~-~~~~~~~~~~~~~~Dvv   85 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERFG-------ELGI-AIAYLDLEELLAEADLI   85 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHh-------hccc-ceeecchhhccccCCEE
Confidence            46789999999999999999998 4564 7899999987543 22222211       1000 01234677888999999


Q ss_pred             EEcCCCChh-hh-hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          241 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       241 ~l~lPlt~~-t~-~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      ++|+|.... .. ..+..   ..++++.+++|++..+.. + .|.+.+++..
T Consensus        86 i~~~~~~~~~~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g  132 (155)
T cd01065          86 INTTPVGMKPGDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALG  132 (155)
T ss_pred             EeCcCCCCCCCCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence            999996653 11 22332   236899999999876543 3 7777777653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.49  E-value=6.8e-07  Score=86.38  Aligned_cols=111  Identities=17%  Similarity=0.175  Sum_probs=77.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhc-CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ...+|||||+|.||+.+++.+.+. .++++. ++|+++... +++.+.|       +.    ...+.++++++.++|+|+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vv   72 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVV   72 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEE
Confidence            347999999999999999998443 578876 778876542 2222221       11    112468999999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +|+|...  ..-+.   ...++.|.-++..++|.+.+.++|.++.+++..
T Consensus        73 i~tp~~~--h~e~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~  117 (271)
T PRK13302         73 EAAPASV--LRAIV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG  117 (271)
T ss_pred             ECCCcHH--HHHHH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence            9999432  22222   333466777777889988889999998888654

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.48  E-value=5e-06  Score=80.51  Aligned_cols=169  Identities=16%  Similarity=0.205  Sum_probs=108.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|++.+....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |=       +|.+--
T Consensus        61 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~  130 (287)
T PRK14176         61 KACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KD-------ADGFHP  130 (287)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence            33455788887766654 357777776663     25689999865  344443 34444322  31       222210


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                         ...|-...+.+ .....++.-++.++=                         +.+.+++||++.|||.|. +|+.+|
T Consensus       131 ---~N~g~l~~g~~-~~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrs~iVGkPla  181 (287)
T PRK14176        131 ---YNMGKLMIGDE-GLVPCTPHGVIRALE-------------------------EYGVDIEGKNAVIVGHSNVVGKPMA  181 (287)
T ss_pred             ---hhhhhHhcCCC-CCCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCcccHHHHH
Confidence               01111122222 244556665554431                         123579999999999999 999999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ...|++|+.++..                            ..++.+..++||+|+.++.-    .+++..+   .
T Consensus       182 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvv~AvG~----p~~i~~~---~  225 (287)
T PRK14176        182 AML-LNRNATVSVCHVF----------------------------TDDLKKYTLDADILVVATGV----KHLIKAD---M  225 (287)
T ss_pred             HHH-HHCCCEEEEEecc----------------------------CCCHHHHHhhCCEEEEccCC----ccccCHH---H
Confidence            998 6889999887642                            13788899999999998752    3467666   4


Q ss_pred             CCCCcEEEEcCCC
Q 016162          262 MKKEAILVNCSRG  274 (394)
Q Consensus       262 mk~gailIN~aRG  274 (394)
                      +|+|+++||++--
T Consensus       226 vk~gavVIDvGin  238 (287)
T PRK14176        226 VKEGAVIFDVGIT  238 (287)
T ss_pred             cCCCcEEEEeccc
Confidence            5899999999853

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.47  E-value=4.6e-06  Score=81.95  Aligned_cols=120  Identities=22%  Similarity=0.213  Sum_probs=71.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (394)
                      ++|+|||.|.||.++|..+ ...|.+|++||++.......  ..+.....+...|...        .......++++.++
T Consensus         3 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVF-ARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccHHHHHHHHHH-HHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            4799999999999999998 56799999999987542110  0000000111122110        00123468889999


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      .||+|+.|+|...+....+-.+.-+..+++.++ ..+.. ......+.+.+..
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii-~ssts-~~~~~~la~~~~~  132 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAIL-ASSTS-ALLASAFTEHLAG  132 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceE-EEeCC-CCCHHHHHHhcCC
Confidence            999999999976544433323322334555544 43333 3446677777754

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.47  E-value=8.3e-06  Score=78.96  Aligned_cols=170  Identities=17%  Similarity=0.158  Sum_probs=106.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.|+|++..+  ..+++ +++++.+-.  |=       +|.+--
T Consensus        56 k~a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KD-------VDGl~~  125 (285)
T PRK10792         56 KACEEVGFVSRSYDLPE-TTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD--KD-------VDGFHP  125 (285)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cCccCh
Confidence            34455788877666654 357788776663     14689999865  34443 334443322  21       222210


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-...+.++ ....++.-++-++-                         +.+.+++||++.|||.|. +|+.+|
T Consensus       126 ~---n~g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrs~iVG~Pla  176 (285)
T PRK10792        126 Y---NVGRLAQRIPL-LRPCTPRGIMTLLE-------------------------RYGIDTYGLNAVVVGASNIVGRPMS  176 (285)
T ss_pred             h---hHhHHhCCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCcccHHHHH
Confidence            0   00101111122 33445555443331                         123579999999999999 999999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ...|++|+.++.+                            ..++++.+++||+|+.+++.    .+++..+   .
T Consensus       177 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvi~avG~----p~~v~~~---~  220 (285)
T PRK10792        177 LEL-LLAGCTVTVCHRF----------------------------TKNLRHHVRNADLLVVAVGK----PGFIPGE---W  220 (285)
T ss_pred             HHH-HHCCCeEEEEECC----------------------------CCCHHHHHhhCCEEEEcCCC----cccccHH---H
Confidence            998 6889999987642                            13788999999999999952    2356664   4


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                      +|+|+++||++--.
T Consensus       221 vk~gavVIDvGin~  234 (285)
T PRK10792        221 IKPGAIVIDVGINR  234 (285)
T ss_pred             cCCCcEEEEccccc
Confidence            58999999998533

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.46  E-value=5.4e-06  Score=80.02  Aligned_cols=170  Identities=15%  Similarity=0.153  Sum_probs=110.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     +..|+|++..+  ..+++ .++++.+-.  |       -+|.+--
T Consensus        49 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--K-------DVDGl~~  118 (279)
T PRK14178         49 RACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--K-------DVDGFHP  118 (279)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            33455688887666554 357788777663     24689999865  44554 344444332  3       1222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hHHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA  181 (394)
                      .   ..|-...+.++ ....++.-++.++=                         +.+.+++|+++.|+|.+ ..|+.+|
T Consensus       119 ~---n~g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~V~ViGrs~~vGrpla  169 (279)
T PRK14178        119 L---NLGRLVSGLPG-FAPCTPNGIMTLLH-------------------------EYKISIAGKRAVVVGRSIDVGRPMA  169 (279)
T ss_pred             h---hHHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCccccHHHH
Confidence            0   01111122232 44556665554431                         12357999999999999 9999999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..+ ..+|++|+.+..+.                            .++.+.+++||+|+.+++.    .+++.++.+  
T Consensus       170 ~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk----~~lv~~~~v--  214 (279)
T PRK14178        170 ALL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGK----AGFITPDMV--  214 (279)
T ss_pred             HHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCc----ccccCHHHc--
Confidence            997 78999998876432                            3678889999999999972    267888875  


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                       |+|+++||+|-..
T Consensus       215 -k~GavVIDVgi~~  227 (279)
T PRK14178        215 -KPGATVIDVGINQ  227 (279)
T ss_pred             -CCCcEEEEeeccc
Confidence             9999999998544

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.45  E-value=3.7e-06  Score=85.93  Aligned_cols=119  Identities=18%  Similarity=0.199  Sum_probs=76.2

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhh--------hhhhhcCCCCccccccCCHHHHhcccC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +|||||+|.||..+|..| ...|.+|++||++...... ......        ..+.+.-..+ ......++++++++||
T Consensus         2 kI~vIGlG~~G~~lA~~L-a~~G~~V~~~d~~~~~v~~-l~~g~~~~~e~~l~~~~~~~~~~g-~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALL-ADLGHEVTGVDIDQEKVDK-LNKGKSPIYEPGLDELLAKALAAG-RLRATTDYEDAIRDAD   78 (411)
T ss_pred             EEEEECCCchhHHHHHHH-HhcCCeEEEEECCHHHHHH-hhcCCCCCCCCCHHHHHHHhhhcC-CeEEECCHHHHHhhCC
Confidence            799999999999999998 4779999999998764321 111000        0000000000 0123357888899999


Q ss_pred             EEEEcCCCChh------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHH-HHHc
Q 016162          239 VISLHPVLDKT------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVE-HLKQ  288 (394)
Q Consensus       239 iV~l~lPlt~~------t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~-aL~~  288 (394)
                      +|++|+|....      ...+..  ....+.+++|.++|+.|+-.+-..+.+.. .+++
T Consensus        79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            99999995432      112221  34566789999999999766666667764 4444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.45  E-value=1.6e-06  Score=85.74  Aligned_cols=116  Identities=20%  Similarity=0.214  Sum_probs=76.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-CCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ..+|+|||.|.||..+|.+| ...|.+|.+|+|+.... +.....-.......+. .........++++.++.+|+|+++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L-~~~G~~V~~~~r~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLA-ASKGVPVRLWARRPEFA-AALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            35899999999999999998 46799999999976542 1111100000000010 000122345888889999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ  288 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG-~~vd--e~aL~~aL~~  288 (394)
                      +|.. .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            9954 22     5566888999999999997 4332  4566666654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.43  E-value=6.5e-07  Score=77.42  Aligned_cols=105  Identities=23%  Similarity=0.300  Sum_probs=73.7

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      +++|+++.|||.|.+|+.++..| ...|++ |++++|+..+. ++..+.+       +........+.++.+.+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~ra-~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPERA-EALAEEF-------GGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHHH-HHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHHH-HHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence            78999999999999999999998 677986 99999987652 2222222       11222233456788889999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCc-EEEEcCCCcccC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVID  278 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~ga-ilIN~aRG~~vd  278 (394)
                      +.++|..   ...+.++.+...++.. +++|.|...-||
T Consensus        80 I~aT~~~---~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   80 INATPSG---MPIITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             EE-SSTT---STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             EEecCCC---CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence            9999843   3378888887666544 888887654443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.43  E-value=6.2e-06  Score=79.80  Aligned_cols=170  Identities=17%  Similarity=0.207  Sum_probs=109.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++. .+++|+.+.+.     +..|+|++..+  ..+++. ++++.+-.  |       -+|.+.-
T Consensus        54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~  123 (285)
T PRK14191         54 KACERVGMDSDLHTLQEN-TTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--K-------DVDGFHP  123 (285)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCh
Confidence            334556888877666543 46777776653     24689999865  345543 34443322  3       1222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hHHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA  181 (394)
                      .   ..|-...+.+ .....++.-++.++=                         +.+.++.||++.|||-| .+|+.+|
T Consensus       124 ~---n~g~l~~g~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvVvGrs~~VG~Pla  174 (285)
T PRK14191        124 L---NIGKLCSQLD-GFVPATPMGVMRLLK-------------------------HYHIEIKGKDVVIIGASNIVGKPLA  174 (285)
T ss_pred             h---hHHHHhcCCC-CCCCCcHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCchhHHHHH
Confidence            0   0111122222 245566666654431                         12357999999999999 9999999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ...|++|++++...                            .++.+.+++||+|+.+++    ..+++..+.+  
T Consensus       175 ~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG----~p~~i~~~~v--  219 (285)
T PRK14191        175 MLM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVG----KPDLIKASMV--  219 (285)
T ss_pred             HHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecC----CCCcCCHHHc--
Confidence            998 67899998874321                            357788999999999996    3556777766  


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                       |+|+++||++-..
T Consensus       220 -k~GavVIDvGi~~  232 (285)
T PRK14191        220 -KKGAVVVDIGINR  232 (285)
T ss_pred             -CCCcEEEEeeccc
Confidence             8999999998644

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.43  E-value=1e-06  Score=79.12  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=68.1

Q ss_pred             cccCCCeEEEEecChH-HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~I-G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .++.|+++.|||.|.+ |..+|+.| ...|++|++.+|+.                            .++.+.+.+||+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi   90 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI   90 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence            3689999999999996 88899998 68899999988753                            256678999999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  278 (394)
                      |+.+++..    ++|..+.   ++++.++||+|...-+|
T Consensus        91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080          91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence            99999832    2688875   47899999999888777

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.42  E-value=9e-06  Score=85.15  Aligned_cols=133  Identities=20%  Similarity=0.233  Sum_probs=87.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (394)
                      =++|||||.|.||+.||..++ ..|.+|++||++++.....  ..+...+.+...|...        .......++++ +
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l   82 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-L   82 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence            358999999999999999984 6799999999997653211  1111101111222111        01123457766 5


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP  303 (394)
                      ++||+|+-|+|.+.+.+..+-.+.-..++++++|. |+|.-.   ...|.+++.. ..+..++..|.+-|
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~---i~~iA~~~~~-p~r~~G~HFf~Pap  148 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS---ITAIAAGLAR-PERVAGLHFFNPAP  148 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC---HHHHHHhcCc-ccceEEEeccCccc
Confidence            79999999999888877766555556788888876 776644   3567777754 34678888776444

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.39  E-value=1.4e-05  Score=78.47  Aligned_cols=116  Identities=14%  Similarity=0.195  Sum_probs=71.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHh----hhhhhhhcCCC---CccccccCCHHHHhcccC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ---PVTWKRASSMDEVLREAD  238 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~l~ell~~aD  238 (394)
                      ++|+|||.|.||..+|..+ ...|.+|++||++..... ...+.    .+. ....+..   ........++++.+++||
T Consensus         5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~aD   81 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGALE-RARGVIERALGV-YAPLGIASAGMGRIRMEAGLAAAVSGAD   81 (311)
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HHHHHHHHHHHH-hhhcccHHHHhhceEEeCCHHHHhccCC
Confidence            5899999999999999998 567999999999875422 11110    100 0000000   000122357888899999


Q ss_pred             EEEEcCCCChhh-hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          239 VISLHPVLDKTT-YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       239 iV~l~lPlt~~t-~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                      +|++|+|...+. ..++ .+.-..++++++++..+.|  +....|.+.+.
T Consensus        82 lVi~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         82 LVIEAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EEEEeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            999999966543 3343 3333446777776544433  23557777664

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.39  E-value=1.7e-05  Score=77.15  Aligned_cols=130  Identities=19%  Similarity=0.296  Sum_probs=80.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHh--hh-hhhhhcCCCC--------ccccccCCHHH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTA--YG-QFLKANGEQP--------VTWKRASSMDE  232 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~--~~-~~~~~~~~~~--------~~~~~~~~l~e  232 (394)
                      ++|+|||.|.||..+|..+ ...|.+|++||++.......  ....  |+ ..+...+...        .......++ +
T Consensus         4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence            5899999999999999997 57799999999987653210  0000  00 0000111110        001122355 5


Q ss_pred             HhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       233 ll~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      .+++||+|+.++|...+...-+-++.-+.+++++++++.+.|  +....+.+.+.. .-+..++..|.
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~  146 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFN  146 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence            679999999999966554443434455668899999877766  355667776653 23456666554

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.38  E-value=9.1e-06  Score=85.08  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhh---hhhcCCCCc-cccccCCHHHHhcccCE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQF---LKANGEQPV-TWKRASSMDEVLREADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~---~~~~~~~~~-~~~~~~~l~ell~~aDi  239 (394)
                      ++|||||.|.||..+|..++ ..|.+|++||+++.....  +..+.....   +........ ......++++.+++||+
T Consensus         5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            48999999999999999984 669999999998765321  100000000   000000000 12234688899999999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      |+.++|...+.+..+-++.-+.++++++| .+++.++ ....|.+.+..
T Consensus        84 Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         84 IQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence            99999977665654434455567778654 5555443 35577766644

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.37  E-value=1.9e-06  Score=84.74  Aligned_cols=107  Identities=16%  Similarity=0.200  Sum_probs=70.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||+|.||..+|..| ...|.+|.+||+++... +..... +........  ...+.....++++.++.+|+|++|
T Consensus         2 mkI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQA-AEINAD-RENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHc-CcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            4799999999999999998 46789999999976542 111110 000000000  000122345788889999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v  277 (394)
                      +|. ..+..++ .+....+++++++|+++.|-..
T Consensus        79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence            995 4555555 3455667899999999865443

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.37  E-value=1.1e-06  Score=85.03  Aligned_cols=103  Identities=21%  Similarity=0.297  Sum_probs=71.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++|||||+|+||+++++.|. .-|    .+|+++||+.... +...+.|       |     .....+..+++.+||+|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASDKY-------G-----ITITTNNNEVANSADILI   68 (272)
T ss_pred             CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHHhc-------C-----cEEeCCcHHHHhhCCEEE
Confidence            48999999999999999874 434    3799999987542 2211111       2     122357788899999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                      +|+|. .....++ ++.-..++++.++|++.-|-.  .+.|-+.+
T Consensus        69 LavkP-~~~~~vl-~~l~~~~~~~~lvISi~AGi~--i~~l~~~l  109 (272)
T PRK12491         69 LSIKP-DLYSSVI-NQIKDQIKNDVIVVTIAAGKS--IKSTENEF  109 (272)
T ss_pred             EEeCh-HHHHHHH-HHHHHhhcCCcEEEEeCCCCc--HHHHHHhc
Confidence            99993 5555555 344455688899999987754  44555544

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.37  E-value=5.8e-06  Score=83.91  Aligned_cols=137  Identities=15%  Similarity=0.236  Sum_probs=86.0

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +|+|||+|.||..+|..++  .|.+|++||++.... +...+..        ...+...   ........+..+.++.||
T Consensus         2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e~~l~~~l~~~---~~~l~~t~~~~~~~~~ad   75 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVDKEIQQFLQSD---KIHFNATLDKNEAYRDAD   75 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCCcCHHHHHHhC---CCcEEEecchhhhhcCCC
Confidence            7999999999999997763  489999999988653 2211100        0000001   111222234678889999


Q ss_pred             EEEEcCCCChhh-------hhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC---
Q 016162          239 VISLHPVLDKTT-------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---  306 (394)
Q Consensus       239 iV~l~lPlt~~t-------~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~---  306 (394)
                      +|++|+|...+-       ..+..  +...+ +++|.++|+.|+-.+=-++.+.+.+.+..   .   +|.+|.+.+   
T Consensus        76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~---v---~~~PE~l~~G~a  148 (388)
T PRK15057         76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTEN---I---IFSPEFLREGKA  148 (388)
T ss_pred             EEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCc---E---EECcccccCCcc
Confidence            999999954111       11111  23333 79999999999988888888888776532   2   246666532   


Q ss_pred             -CccccCCceE
Q 016162          307 -PGLSEMKNAI  316 (394)
Q Consensus       307 -~~L~~~~nvi  316 (394)
                       ..++..|.|+
T Consensus       149 ~~d~~~p~rvv  159 (388)
T PRK15057        149 LYDNLHPSRIV  159 (388)
T ss_pred             cccccCCCEEE
Confidence             2455555665

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.36  E-value=5.4e-06  Score=75.31  Aligned_cols=144  Identities=20%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCC--------ccccccCCHHHHhcc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLRE  236 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~~  236 (394)
                      +|+|||.|.||+.+|..++ ..|++|..||++......  +....+.+.+.+.+...        .......+++++. .
T Consensus         1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6999999999999999974 679999999998875321  22222111222222211        1122346888877 9


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceE
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  316 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvi  316 (394)
                      ||+|+=++|-+.+.+.-+-++.-+.++++++|...+.+  +.-..|..++.. .-+..++-.|.  |....||.+   |+
T Consensus        79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~~--P~~~~~lVE---vv  150 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFFN--PPHLMPLVE---VV  150 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-S--STTT--EEE---EE
T ss_pred             hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEeccc--ccccCceEE---Ee
Confidence            99999999987777766666777788999998665443  445667777653 44677777774  332234554   55


Q ss_pred             EcCC
Q 016162          317 VVPH  320 (394)
Q Consensus       317 lTPH  320 (394)
                      -.|+
T Consensus       151 ~~~~  154 (180)
T PF02737_consen  151 PGPK  154 (180)
T ss_dssp             E-TT
T ss_pred             CCCC
Confidence            5554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.35  E-value=2.3e-05  Score=75.76  Aligned_cols=170  Identities=16%  Similarity=0.234  Sum_probs=108.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     +..|+|++..+  ..+++. ++++.+-.  |=       +|.+.-
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p  123 (284)
T PRK14170         54 KRTEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KD-------VDGFHP  123 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence            33455688887766654 346777776663     24689999865  345443 44444332  31       222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      ..   .|-.....+ .....++.-++.++-                         +.|.++.||++.|||-+. +|+.+|
T Consensus       124 ~N---~g~l~~~~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvVvGrS~iVGkPla  174 (284)
T PRK14170        124 VN---VGNLFIGKD-SFVPCTPAGIIELIK-------------------------STGTQIEGKRAVVIGRSNIVGKPVA  174 (284)
T ss_pred             hh---hhHHhCCCC-CCCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            00   111111222 245566666654441                         134689999999999986 599999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.+...                            ..++.+.+++||+|+.+++.    .+++..+.+  
T Consensus       175 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~v--  219 (284)
T PRK14170        175 QLL-LNENATVTIAHSR----------------------------TKDLPQVAKEADILVVATGL----AKFVKKDYI--  219 (284)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence            998 6779999877432                            14788999999999999872    456777666  


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                       |+|+++||++.-.
T Consensus       220 -k~GavVIDvGin~  232 (284)
T PRK14170        220 -KPGAIVIDVGMDR  232 (284)
T ss_pred             -CCCCEEEEccCcc
Confidence             7999999998654

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.32  E-value=1.9e-05  Score=76.31  Aligned_cols=169  Identities=18%  Similarity=0.206  Sum_probs=107.2

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccchh
Q 016162           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (394)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~~  103 (394)
                      ..++.|.+.+....++. .+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+..  |=       +|.+.-.
T Consensus        55 ~a~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~~  124 (281)
T PRK14183         55 ACDRVGIYSITHEMPST-ISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KD-------VDGFHPY  124 (281)
T ss_pred             HHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hc-------ccccChh
Confidence            34556888776665543 47777776653     24689999865  345543 44444332  31       2222100


Q ss_pred             HHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hHHHHHHH
Q 016162          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (394)
Q Consensus       104 ~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (394)
                         ..|-...+.+ .....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       125 ---n~g~l~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~~VG~Pla~  175 (281)
T PRK14183        125 ---NVGRLVTGLD-GFVPCTPLGVMELL----E---------------------EYEIDVKGKDVCVVGASNIVGKPMAA  175 (281)
T ss_pred             ---hhhHHhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCcchHHHHH
Confidence               0111111122 23455565554333    1                     12358999999999999 88999999


Q ss_pred             HHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcC
Q 016162          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (394)
Q Consensus       183 ~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~m  262 (394)
                      +| ..-|++|+.....                            ..++.+..++||+|+.++.    ..+++..+.+   
T Consensus       176 lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~v---  219 (281)
T PRK14183        176 LL-LNANATVDICHIF----------------------------TKDLKAHTKKADIVIVGVG----KPNLITEDMV---  219 (281)
T ss_pred             HH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCEEEEecC----cccccCHHHc---
Confidence            98 6779999866431                            1368899999999999986    2556777666   


Q ss_pred             CCCcEEEEcCCCc
Q 016162          263 KKEAILVNCSRGP  275 (394)
Q Consensus       263 k~gailIN~aRG~  275 (394)
                      |+|+++||++--.
T Consensus       220 k~gavvIDvGin~  232 (281)
T PRK14183        220 KEGAIVIDIGINR  232 (281)
T ss_pred             CCCcEEEEeeccc
Confidence            7999999998543

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.31  E-value=5.7e-06  Score=80.12  Aligned_cols=105  Identities=16%  Similarity=0.246  Sum_probs=70.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+|+|||+|+||+.+++.+ ...|    .+|++|+++...........|       +  .  .....+..+++.++|+|+
T Consensus         2 ~~I~iIG~G~mG~ala~~L-~~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~--~--~~~~~~~~e~~~~aDvVi   69 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKL-LETEVATPEEIILYSSSKNEHFNQLYDKY-------P--T--VELADNEAEIFTKCDHSF   69 (277)
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCCCcccEEEEeCCcHHHHHHHHHHc-------C--C--eEEeCCHHHHHhhCCEEE
Confidence            4799999999999999997 4445    689999986543322211111       0  0  112357788899999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                      +|+|. .....++ .+....++++..+|.+.-|  +..+.|-+.+
T Consensus        70 lavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~  110 (277)
T PRK06928         70 ICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEIT  110 (277)
T ss_pred             EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHc
Confidence            99992 2333333 3333456788899998877  5556666655

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.29  E-value=4.2e-05  Score=73.83  Aligned_cols=170  Identities=17%  Similarity=0.231  Sum_probs=107.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+++....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |=       +|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KD-------VDGl~~  124 (278)
T PRK14172         55 KVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN--KD-------IDCLTF  124 (278)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cCccCH
Confidence            33455688887766654 357787776663     24689999865  345443 44444332  31       222210


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-....-++ ....++.-++.++    +                     +.+.+++||++.|||-+. +|+.+|
T Consensus       125 ~---n~g~l~~g~~~-~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~~VGkPla  175 (278)
T PRK14172        125 I---SVGKFYKGEKC-FLPCTPNSVITLI----K---------------------SLNIDIEGKEVVVIGRSNIVGKPVA  175 (278)
T ss_pred             h---hHHHHhCCCCC-CcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence            0   01111111222 3445555555433    1                     123579999999999875 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.++..                            ..++.+..++||+|+.+++.    .++|..+.+  
T Consensus       176 ~lL-~~~~AtVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~i--  220 (278)
T PRK14172        176 QLL-LNENATVTICHSK----------------------------TKNLKEVCKKADILVVAIGR----PKFIDEEYV--  220 (278)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence            998 6789999887542                            13788999999999999973    456877765  


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                       |+|+++||++--.
T Consensus       221 -k~gavVIDvGin~  233 (278)
T PRK14172        221 -KEGAIVIDVGTSS  233 (278)
T ss_pred             -CCCcEEEEeeccc
Confidence             8999999997533

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.27  E-value=1.5e-05  Score=77.85  Aligned_cols=114  Identities=15%  Similarity=0.200  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (394)
Q Consensus       177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~  256 (394)
                      |+.||++| ..-|.+|++||+++....+...+    .+...|.     ....++.+++++||+|++|+|..+.+..++ .
T Consensus        32 GspMArnL-lkAGheV~V~Drnrsa~e~e~~e----~LaeaGA-----~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~  100 (341)
T TIGR01724        32 GSRMAIEF-AMAGHDVVLAEPNREFMSDDLWK----KVEDAGV-----KVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R  100 (341)
T ss_pred             HHHHHHHH-HHCCCEEEEEeCChhhhhhhhhH----HHHHCCC-----eecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence            89999998 57799999999886532111111    1222232     234688999999999999999888888887 5


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeeccCCCCC
Q 016162          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPY  304 (394)
Q Consensus       257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~l~gaalDV~~~EP~  304 (394)
                      ..++.+++|+++||+++   ++.+.++..|+.. ++..--+-|.+.+|-
T Consensus       101 GLaa~L~~GaIVID~ST---IsP~t~~~~~e~~l~~~r~d~~v~s~HP~  146 (341)
T TIGR01724       101 TIIEHVPENAVICNTCT---VSPVVLYYSLEKILRLKRTDVGISSMHPA  146 (341)
T ss_pred             HHHhcCCCCCEEEECCC---CCHHHHHHHHHHHhhcCccccCeeccCCC
Confidence            68899999999999976   6678888888761 112345566777775

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.27  E-value=3.1e-05  Score=74.93  Aligned_cols=170  Identities=18%  Similarity=0.269  Sum_probs=108.9

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~---~--~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+++....++ ..+++|+.+.+.   .  +.|+|++..+  ..+++ .++++.+-.  |=|-    |+....+
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  125 (282)
T PRK14169         53 RRAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDVD----GFSPVSV  125 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhh
Confidence            33455688887766654 357777776663   1  4689999865  34443 344444332  3111    1111111


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                            |-...+.++ ....++.-++.++=                         +.+.+++||++.|||-+. +|+.+|
T Consensus       126 ------g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla  173 (282)
T PRK14169        126 ------GRLWANEPT-VVASTPYGIMALLD-------------------------AYDIDVAGKRVVIVGRSNIVGRPLA  173 (282)
T ss_pred             ------HHHhcCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence                  111122232 45566666664441                         123579999999999876 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.+...                            ..++.+..++||+|+++++.    .+++..+.+  
T Consensus       174 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~v--  218 (282)
T PRK14169        174 GLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEADILVVAVGV----PHFIGADAV--  218 (282)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence            998 6779999877431                            14788999999999999972    456887765  


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                       |+|+++||++--.
T Consensus       219 -k~GavVIDvGin~  231 (282)
T PRK14169        219 -KPGAVVIDVGISR  231 (282)
T ss_pred             -CCCcEEEEeeccc
Confidence             7999999998644

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.26  E-value=3.3e-05  Score=74.89  Aligned_cols=171  Identities=20%  Similarity=0.225  Sum_probs=108.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+++....++. .+++|+.+.+.     ++.|+|++..+  ..+++. +++..+-.  |=       +|.+.-
T Consensus        52 k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~  121 (287)
T PRK14173         52 RQAKALGLRSQVEVLPES-TSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--KD-------VDGFHP  121 (287)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence            334557888877666543 46777776663     24789999865  344443 33443322  31       222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-.+.+.+ .....++.-++.++-                         +.+.++.||++.|||-+. +|+.+|
T Consensus       122 ~---N~g~l~~~~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla  172 (287)
T PRK14173        122 L---NVGRLWMGGE-ALEPCTPAGVVRLLK-------------------------HYGIPLAGKEVVVVGRSNIVGKPLA  172 (287)
T ss_pred             h---hhHHHhcCCC-CCCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence            0   0111111122 244556665554431                         124589999999999875 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.+...                            ..++++..++||+|+.++..    .+++..+.+  
T Consensus       173 ~lL-~~~~aTVtichs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~v--  217 (287)
T PRK14173        173 ALL-LREDATVTLAHSK----------------------------TQDLPAVTRRADVLVVAVGR----PHLITPEMV--  217 (287)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence            998 6779999876532                            13788999999999999962    467877776  


Q ss_pred             CCCCcEEEEcCCCcc
Q 016162          262 MKKEAILVNCSRGPV  276 (394)
Q Consensus       262 mk~gailIN~aRG~~  276 (394)
                       |+|+++||++.-.+
T Consensus       218 -k~GavVIDVGin~~  231 (287)
T PRK14173        218 -RPGAVVVDVGINRV  231 (287)
T ss_pred             -CCCCEEEEccCccc
Confidence             89999999987553

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.25  E-value=3.8e-05  Score=74.83  Aligned_cols=171  Identities=20%  Similarity=0.210  Sum_probs=108.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~---~--~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++. .+++|+.+.+.   .  +.++|++..+  ..+++ .++++.+-.  |       -+|.+.-
T Consensus        55 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (297)
T PRK14186         55 KACARVGIASFGKHLPAD-TSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--K-------DADGLHP  124 (297)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            344557888877666543 57777776663   1  4689999865  34443 344444332  3       1222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      ..   .|-...+.++ ....+|.-++.++-                         +.+.+++||++.|||-+. +|+.+|
T Consensus       125 ~n---~g~l~~~~~~-~~PcTp~aii~lL~-------------------------~~~i~l~Gk~vvVIGrS~iVGkPla  175 (297)
T PRK14186        125 LN---LGRLVKGEPG-LRSCTPAGVMRLLR-------------------------SQQIDIAGKKAVVVGRSILVGKPLA  175 (297)
T ss_pred             hh---HHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence            10   1111122222 34455555554331                         124589999999999876 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.+...                            ..++++..++||+|+.+++.    .+++..+.+  
T Consensus       176 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~i--  220 (297)
T PRK14186        176 LML-LAANATVTIAHSR----------------------------TQDLASITREADILVAAAGR----PNLIGAEMV--  220 (297)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence            998 6789999877432                            14788999999999999972    357777666  


Q ss_pred             CCCCcEEEEcCCCcc
Q 016162          262 MKKEAILVNCSRGPV  276 (394)
Q Consensus       262 mk~gailIN~aRG~~  276 (394)
                       |+|+++||++--.+
T Consensus       221 -k~gavVIDvGin~~  234 (297)
T PRK14186        221 -KPGAVVVDVGIHRL  234 (297)
T ss_pred             -CCCCEEEEeccccc
Confidence             79999999986553

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.25  E-value=5.6e-05  Score=73.32  Aligned_cols=170  Identities=14%  Similarity=0.178  Sum_probs=107.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|++++....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |=       +|.+.-
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KD-------VDGl~~  124 (288)
T PRK14171         55 KNAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KD-------IDGFHP  124 (288)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cccCCc
Confidence            34455788887766554 357788777663     24789999865  344443 44443322  31       222210


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-............++.-++.++    +                     +.+.++.||++.|||-+. +|+.+|
T Consensus       125 ~---N~g~l~~g~~~~~~PcTp~av~~lL----~---------------------~y~i~l~GK~vvViGrS~iVGkPla  176 (288)
T PRK14171        125 L---NVGYLHSGISQGFIPCTALGCLAVI----K---------------------KYEPNLTGKNVVIIGRSNIVGKPLS  176 (288)
T ss_pred             c---chhhhhcCCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            0   1111112221224455555544333    2                     123579999999999886 599999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.+...                            ..++.+..++||+|+.++..    .++|..+.+  
T Consensus       177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~v--  221 (288)
T PRK14171        177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEYF--  221 (288)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHHc--
Confidence            998 6779999876531                            14788999999999999972    467887766  


Q ss_pred             CCCCcEEEEcCCC
Q 016162          262 MKKEAILVNCSRG  274 (394)
Q Consensus       262 mk~gailIN~aRG  274 (394)
                       |+|+++||++--
T Consensus       222 -k~GavVIDvGin  233 (288)
T PRK14171        222 -NPESIVIDVGIN  233 (288)
T ss_pred             -CCCCEEEEeecc
Confidence             799999999843

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.24  E-value=0.00011  Score=76.96  Aligned_cols=253  Identities=18%  Similarity=0.140  Sum_probs=129.9

Q ss_pred             eeEEEeCCCCc--eEEEEeCCCCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHH---hc-----CCCcEEEecCCc
Q 016162            5 VSIEVWNPNGK--YRVVSTKPMPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIAL---IG-----DKCDGVIGQLTE   72 (394)
Q Consensus         5 ~~~~~~~~~~~--~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~el~~~---~~-----~~~d~ii~~~~~   72 (394)
                      |+|-++++...  .||-    +.| +..+.|.+.|+++.+.....  ...+.+|..+.   +.     +++|.|+.- ..
T Consensus         1 m~IGipkE~~~~E~RVa----ltP-~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV-~~   74 (509)
T PRK09424          1 MRIGIPRERLPGETRVA----ATP-KTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKV-NA   74 (509)
T ss_pred             CeEEEecCCCCCCeEec----cCH-HHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEe-CC
Confidence            45666665543  2342    223 24667778888887655422  22344444421   10     136766632 22


Q ss_pred             cccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCC--chhhHHHHHHHHHHH--HhchHHHHHHHHcC
Q 016162           73 DWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVL--TETTAELAASLSLAA--ARRIVEADEFMRAG  148 (394)
Q Consensus        73 ~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~--~~~vAE~~l~~~L~~--~R~~~~~~~~~~~g  148 (394)
                       .+++-++.++. |-.+++...-..|.=-++.+.++||.+...--.-  +++-.=.+++-|-.+  .|-+..+.+.+  +
T Consensus        75 -P~~~e~~~l~~-g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~aa~~~--~  150 (509)
T PRK09424         75 -PSDDEIALLRE-GATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIEAAHEF--G  150 (509)
T ss_pred             -CCHHHHHhcCC-CCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHHHHHHh--c
Confidence             23444666765 3345565555445445677788999887722211  111111111111111  11111111111  1


Q ss_pred             ccCCCCCCcc-cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhh---hhhcCC--CCc
Q 016162          149 LYDGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGE--QPV  222 (394)
Q Consensus       149 ~~~~w~~~~~-~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~--~~~  222 (394)
                      ++   .+... ......|.+|.|+|.|.+|...++.+ +.+|++|+++|+++....  ..+.++..   .+....  ...
T Consensus       151 ~~---~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rle--~aeslGA~~v~i~~~e~~~~~~  224 (509)
T PRK09424        151 RF---FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVAE--QVESMGAEFLELDFEEEGGSGD  224 (509)
T ss_pred             cc---CCCceeccCCcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHHcCCeEEEecccccccccc
Confidence            11   00000 00135699999999999999999985 899999999999886532  22223221   000000  000


Q ss_pred             ccc-cc-CC--------HHHHhcccCEEEEcCCCChh-hhhcccHHHHhcCCCCcEEEEcCC
Q 016162          223 TWK-RA-SS--------MDEVLREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       223 ~~~-~~-~~--------l~ell~~aDiV~l~lPlt~~-t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++. .. .+        +.+.+..+|+|+.|...... ...++.++.++.||+|+++++++-
T Consensus       225 gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        225 GYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            000 00 01        12223579999988753111 234557899999999999999974

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.23  E-value=1e-06  Score=82.09  Aligned_cols=133  Identities=14%  Similarity=0.193  Sum_probs=90.5

Q ss_pred             hhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHH-hcCCcEEEE-EcCch
Q 016162          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQ  199 (394)
Q Consensus       122 ~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la-~~~G~~V~~-~d~~~  199 (394)
                      ..++|.+..++...|++.        |    |.         ..++++|+|+|.+|+.+++.+. ...|+++.+ +|+++
T Consensus        62 ~~~gy~v~~l~~~~~~~l--------~----~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~  120 (213)
T PRK05472         62 RGVGYNVEELLEFIEKIL--------G----LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP  120 (213)
T ss_pred             CCCCeeHHHHHHHHHHHh--------C----CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh
Confidence            334588888888888764        1    21         2458999999999999998531 357888775 67654


Q ss_pred             hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEEEcCCCChh---hhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lPlt~~---t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      .....           ..  .+..+....++++++++  .|.|++|+|.+..   ...+.......-+...++.+|+.+|
T Consensus       121 ~~~~~-----------~i--~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~  187 (213)
T PRK05472        121 EKIGT-----------KI--GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPED  187 (213)
T ss_pred             hhcCC-----------Ee--CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCC
Confidence            32100           00  01112223567888765  9999999997665   2233333444556778889999999


Q ss_pred             cccCHHHHHHHHHc
Q 016162          275 PVIDEVALVEHLKQ  288 (394)
Q Consensus       275 ~~vde~aL~~aL~~  288 (394)
                      .+|+.++|..+|..
T Consensus       188 ~~v~~~~l~~~l~~  201 (213)
T PRK05472        188 VIVRNVDLTVELQT  201 (213)
T ss_pred             CEEEEechHHHHHH
Confidence            99999999999874

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=9.4e-05  Score=71.70  Aligned_cols=171  Identities=16%  Similarity=0.226  Sum_probs=109.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+++....++. .+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |       -+|.+.-
T Consensus        55 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (284)
T PRK14190         55 KAAEKVGIYSELYEFPAD-ITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--K-------DVDGFHP  124 (284)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCH
Confidence            334556888877666543 56777776653     14688998865  344443 34443322  3       1222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      ..   .|-...+.++ ....++.-++.++=                         +.+.+++||++.|||-+. +|+.+|
T Consensus       125 ~n---~g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~Gk~vvViGrS~iVG~Pla  175 (284)
T PRK14190        125 IN---VGRMMLGQDT-FLPCTPHGILELLK-------------------------EYNIDISGKHVVVVGRSNIVGKPVG  175 (284)
T ss_pred             hh---HHHHhcCCCC-CCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence            00   1111222232 44556665554431                         134589999999999875 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.++..                            ..++.+.+++||+|+.++.    ..++|..+.+  
T Consensus       176 ~lL-~~~~atVt~chs~----------------------------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~i--  220 (284)
T PRK14190        176 QLL-LNENATVTYCHSK----------------------------TKNLAELTKQADILIVAVG----KPKLITADMV--  220 (284)
T ss_pred             HHH-HHCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecC----CCCcCCHHHc--
Confidence            998 6789999887532                            1368889999999999986    2457888887  


Q ss_pred             CCCCcEEEEcCCCcc
Q 016162          262 MKKEAILVNCSRGPV  276 (394)
Q Consensus       262 mk~gailIN~aRG~~  276 (394)
                       |+|+++||++.-.+
T Consensus       221 -k~gavVIDvGi~~~  234 (284)
T PRK14190        221 -KEGAVVIDVGVNRL  234 (284)
T ss_pred             -CCCCEEEEeecccc
Confidence             89999999987553

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=4.5e-05  Score=73.81  Aligned_cols=170  Identities=17%  Similarity=0.220  Sum_probs=107.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.|+|++..+  ..+++ +++++.+-.  |=|-    |+..+.+
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  125 (282)
T PRK14166         53 KACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINV  125 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence            33455688877766654 357788777663     25789999865  34444 334443322  3111    1111111


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      ...      ..+........++.-++.++=                         +.+.++.||++.|||-+. +|+.+|
T Consensus       126 g~l------~~g~~~~~~PcTp~avi~lL~-------------------------~y~i~l~Gk~vvVvGrS~iVGkPla  174 (282)
T PRK14166        126 GYL------NLGLESGFLPCTPLGVMKLLK-------------------------AYEIDLEGKDAVIIGASNIVGRPMA  174 (282)
T ss_pred             HHH------hcCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            111      111011234556665554431                         123579999999999886 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.+..+                            ..++.+..++||+|+.++..    .+++..+.+  
T Consensus       175 ~lL-~~~~atVt~chs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~v--  219 (282)
T PRK14166        175 TML-LNAGATVSVCHIK----------------------------TKDLSLYTRQADLIIVAAGC----VNLLRSDMV--  219 (282)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence            998 6779999876542                            14788999999999999872    566877765  


Q ss_pred             CCCCcEEEEcCCC
Q 016162          262 MKKEAILVNCSRG  274 (394)
Q Consensus       262 mk~gailIN~aRG  274 (394)
                       |+|+++||++--
T Consensus       220 -k~GavVIDvGin  231 (282)
T PRK14166        220 -KEGVIVVDVGIN  231 (282)
T ss_pred             -CCCCEEEEeccc
Confidence             799999999853

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.21  E-value=3.3e-05  Score=76.34  Aligned_cols=172  Identities=15%  Similarity=0.262  Sum_probs=108.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |=|-    |+..+.+
T Consensus       109 K~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----Gl~p~N~  181 (345)
T PLN02897        109 KACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDVD----GFHPLNV  181 (345)
T ss_pred             HHHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----CCCHHHH
Confidence            33455788887766654 347788777663     24789999865  445554 34443322  3111    1111111


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      -.....     .........++.-++.++-                         +.+.+++||++.|||-+. +|+.+|
T Consensus       182 G~L~~~-----~~~~~~~PCTp~avi~LL~-------------------------~~~i~l~GK~vvVIGRS~iVGkPla  231 (345)
T PLN02897        182 GNLAMR-----GREPLFVSCTPKGCVELLI-------------------------RSGVEIAGKNAVVIGRSNIVGLPMS  231 (345)
T ss_pred             HHHhcC-----CCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccccHHHH
Confidence            111110     1001245566666665541                         123579999999999886 599999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|..+...                            ..++++..++||+|+.++..    .+++..+.+  
T Consensus       232 ~LL-~~~~ATVTicHs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~v~~d~v--  276 (345)
T PLN02897        232 LLL-QRHDATVSTVHAF----------------------------TKDPEQITRKADIVIAAAGI----PNLVRGSWL--  276 (345)
T ss_pred             HHH-HHCCCEEEEEcCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc--
Confidence            987 6779999876432                            13688999999999999872    456877766  


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                       |+|+++||++--.
T Consensus       277 -k~GavVIDVGin~  289 (345)
T PLN02897        277 -KPGAVVIDVGTTP  289 (345)
T ss_pred             -CCCCEEEEccccc
Confidence             7999999998643

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=98.19  E-value=5.8e-05  Score=73.59  Aligned_cols=170  Identities=15%  Similarity=0.175  Sum_probs=107.0

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccchh
Q 016162           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (394)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~~  103 (394)
                      ..++.|.+.+....++ ..+++|+.+.+.     ++.++|++..+  ..+++. ++++.+-.  |       -+|.+.-.
T Consensus        63 ~a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~--K-------DVDGl~~~  132 (299)
T PLN02516         63 ACAEVGIKSFDVDLPE-NISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE--K-------DVDGFHPL  132 (299)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc--c-------ccCccCHh
Confidence            3455688877666644 347788776663     24689998865  344443 33433322  2       12222110


Q ss_pred             HHhhCCceEecC-CCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       104 ~a~~~gI~v~n~-p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   .|-..... .......++.-++.++    +                     +.+.++.||++.|||-+. +|+.+|
T Consensus       133 n---~g~l~~~~~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVIGRS~iVGkPla  184 (299)
T PLN02516        133 N---IGKLAMKGREPLFLPCTPKGCLELL----S---------------------RSGIPIKGKKAVVVGRSNIVGLPVS  184 (299)
T ss_pred             h---HhhHhcCCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence            0   11111110 1123455555554333    1                     123589999999999986 599999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.+...                            ..++++.+++||+|+.++..    .+++..+.+  
T Consensus       185 ~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~v--  229 (299)
T PLN02516        185 LLL-LKADATVTVVHSR----------------------------TPDPESIVREADIVIAAAGQ----AMMIKGDWI--  229 (299)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHHc--
Confidence            998 6779999887532                            14688999999999999863    367887766  


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                       |+|+++||++--.
T Consensus       230 -k~gavVIDvGin~  242 (299)
T PLN02516        230 -KPGAAVIDVGTNA  242 (299)
T ss_pred             -CCCCEEEEeeccc
Confidence             7999999998544

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.19  E-value=5.8e-05  Score=73.03  Aligned_cols=169  Identities=12%  Similarity=0.181  Sum_probs=105.9

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.|+|++..+  ..+++ +++++.+-.  |=       +|.+.-
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~  123 (282)
T PRK14180         54 KACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KD-------VDGFHP  123 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--cc-------ccccCh
Confidence            33455788887766554 346777776653     24689999865  34444 344444332  31       222210


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-...+........++.-++.++=                         +.+.+++||++.|||-+. +|+.+|
T Consensus       124 ~---n~g~l~~g~~~~~~PcTp~aii~lL~-------------------------~y~i~l~Gk~vvViGrS~~VGkPla  175 (282)
T PRK14180        124 T---NVGRLQLRDKKCLESCTPKGIMTMLR-------------------------EYGIKTEGAYAVVVGASNVVGKPVS  175 (282)
T ss_pred             h---hHHHHhcCCCCCcCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            0   01111111111234455655554331                         124579999999999876 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.+...                            ..++.+..++||+|+.+++.    .++|..+.+  
T Consensus       176 ~lL-~~~~ATVt~chs~----------------------------T~dl~~~~k~ADIvIsAvGk----p~~i~~~~v--  220 (282)
T PRK14180        176 QLL-LNAKATVTTCHRF----------------------------TTDLKSHTTKADILIVAVGK----PNFITADMV--  220 (282)
T ss_pred             HHH-HHCCCEEEEEcCC----------------------------CCCHHHHhhhcCEEEEccCC----cCcCCHHHc--
Confidence            998 6779999877542                            13788889999999999972    456777665  


Q ss_pred             CCCCcEEEEcCC
Q 016162          262 MKKEAILVNCSR  273 (394)
Q Consensus       262 mk~gailIN~aR  273 (394)
                       |+|+++||++-
T Consensus       221 -k~gavVIDvGi  231 (282)
T PRK14180        221 -KEGAVVIDVGI  231 (282)
T ss_pred             -CCCcEEEEecc
Confidence             79999999985

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.18  E-value=8.6e-06  Score=72.20  Aligned_cols=104  Identities=21%  Similarity=0.318  Sum_probs=64.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC--CCCccccccCCHHHHhcccCEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG--EQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +|+|||.|+.|..+|..+ ...|.+|..|.|..... +...+. ........  ..+.......++++.++.+|+|++++
T Consensus         1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~~-~~i~~~-~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav   77 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQI-EEINET-RQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV   77 (157)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHHH-HHHHHH-TSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred             CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHHH-HHHHHh-CCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence            689999999999999997 57789999999987432 111110 00000000  00111223468999999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      |. ...+.++ ++....++++..+|++..|-
T Consensus        78 Ps-~~~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   78 PS-QAHREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -G-GGHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             cH-HHHHHHH-HHHhhccCCCCEEEEecCCc
Confidence            93 3334333 55566678999999998664

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.18  E-value=3.2e-06  Score=81.65  Aligned_cols=102  Identities=21%  Similarity=0.370  Sum_probs=75.7

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+...+|.|||.|-+|.+-||. |.++|.+|...|.+..+ +....+.|+      +......+....+++.+.++|+|+
T Consensus       165 GV~~~kv~iiGGGvvgtnaAki-A~glgA~Vtild~n~~r-l~~ldd~f~------~rv~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKI-AIGLGADVTILDLNIDR-LRQLDDLFG------GRVHTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CCCCccEEEECCccccchHHHH-HhccCCeeEEEecCHHH-HhhhhHhhC------ceeEEEEcCHHHHHHHhhhccEEE
Confidence            4667789999999999999998 48999999999998754 332222222      111122233446889999999997


Q ss_pred             --EcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          242 --LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       242 --l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                        +.+|. ...-.++.++.+++||||+++||++
T Consensus       237 gaVLIpg-akaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         237 GAVLIPG-AKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEEEecC-CCCceehhHHHHHhcCCCcEEEEEE
Confidence              44563 4556788899999999999999985

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.17  E-value=7.5e-05  Score=74.22  Aligned_cols=170  Identities=16%  Similarity=0.182  Sum_probs=106.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHh---c--CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALI---G--DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~---~--~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+   +  ++.|+|++..+  ..+++ .++++.+-.  |=       +|.+--
T Consensus       126 K~~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--KD-------VDGl~p  195 (364)
T PLN02616        126 KACDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--KD-------VDGFHP  195 (364)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence            34455788776665544 34777877766   2  24789999865  34554 344444332  31       222211


Q ss_pred             hHHhhCCceEec--CCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHH
Q 016162          103 NAANKYGIAVGN--TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSA  179 (394)
Q Consensus       103 ~~a~~~gI~v~n--~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~  179 (394)
                      ..   .|-....  -++ ....++.-++-++    +                     +.+.+++||++.|||-+. +|+.
T Consensus       196 ~N---~G~L~~g~~~~~-f~PCTp~avielL----~---------------------~y~i~l~GK~vvVIGRS~iVGkP  246 (364)
T PLN02616        196 LN---IGRLAMRGREPL-FVPCTPKGCIELL----H---------------------RYNVEIKGKRAVVIGRSNIVGMP  246 (364)
T ss_pred             hh---hHHHhcCCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccccHH
Confidence            00   0111111  122 3445555544322    1                     123579999999999876 5999


Q ss_pred             HHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHH
Q 016162          180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (394)
Q Consensus       180 vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l  259 (394)
                      +|..| ..-|++|+.+...                            ..++++..++||+|+.++.    ..+++..+.+
T Consensus       247 La~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADIVIsAvG----kp~~i~~d~v  293 (364)
T PLN02616        247 AALLL-QREDATVSIVHSR----------------------------TKNPEEITREADIIISAVG----QPNMVRGSWI  293 (364)
T ss_pred             HHHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCC----CcCcCCHHHc
Confidence            99998 6789999877432                            2478899999999999987    2556877766


Q ss_pred             hcCCCCcEEEEcCCCc
Q 016162          260 ATMKKEAILVNCSRGP  275 (394)
Q Consensus       260 ~~mk~gailIN~aRG~  275 (394)
                         |+|+++||++--.
T Consensus       294 ---K~GAvVIDVGIn~  306 (364)
T PLN02616        294 ---KPGAVVIDVGINP  306 (364)
T ss_pred             ---CCCCEEEeccccc
Confidence               7999999998543

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.16  E-value=6.1e-05  Score=73.23  Aligned_cols=171  Identities=16%  Similarity=0.206  Sum_probs=107.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~---~--~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++. .+++|+.+.+.   .  ..|+|++..+  ..+++. ++++.+-.  |=       +|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~~-~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~  124 (294)
T PRK14187         55 RKAEMLGLRSETILLPST-ISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE--KD-------VDGFHN  124 (294)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence            344557888877666543 46777766553   2  4689998865  345543 44444332  31       222211


Q ss_pred             hHHhhCCceEecCC-CCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHH
Q 016162          103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (394)
Q Consensus       103 ~~a~~~gI~v~n~p-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~v  180 (394)
                      ..   .|-...+.. ......++.-++.++    +                     +.+.++.||++.|||-+. +|+.+
T Consensus       125 ~n---~g~l~~g~~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPl  176 (294)
T PRK14187        125 EN---VGRLFTGQKKNCLIPCTPKGCLYLI----K---------------------TITRNLSGSDAVVIGRSNIVGKPM  176 (294)
T ss_pred             hh---HHHHhCCCCCCCccCcCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHH
Confidence            00   111111111 123455565555333    1                     123579999999999886 59999


Q ss_pred             HHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (394)
Q Consensus       181 A~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~  260 (394)
                      |..| ..-|++|+.+...                            ..++.+.+++||+|+.++..    .+++..+.+ 
T Consensus       177 a~lL-~~~~aTVt~chs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~~i-  222 (294)
T PRK14187        177 ACLL-LGENCTVTTVHSA----------------------------TRDLADYCSKADILVAAVGI----PNFVKYSWI-  222 (294)
T ss_pred             HHHH-hhCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHHc-
Confidence            9997 6889999877542                            14788999999999999872    456777776 


Q ss_pred             cCCCCcEEEEcCCCc
Q 016162          261 TMKKEAILVNCSRGP  275 (394)
Q Consensus       261 ~mk~gailIN~aRG~  275 (394)
                        |+|+++||++-..
T Consensus       223 --k~gaiVIDVGin~  235 (294)
T PRK14187        223 --KKGAIVIDVGINS  235 (294)
T ss_pred             --CCCCEEEEecccc
Confidence              7999999998544

>PRK07680 late competence protein ComER; Validated

Probab=98.16  E-value=1.3e-05  Score=77.41  Aligned_cols=104  Identities=20%  Similarity=0.285  Sum_probs=71.4

Q ss_pred             eEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +|||||+|+||+.+++.| ...|    .+|.+|||+.... +...+.|      .+     .....+..+++..+|+|++
T Consensus         2 ~I~iIG~G~mG~ala~~L-~~~g~~~~~~v~v~~r~~~~~-~~~~~~~------~g-----~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAF-LESGAVKPSQLTITNRTPAKA-YHIKERY------PG-----IHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             EEEEECccHHHHHHHHHH-HHCCCCCcceEEEECCCHHHH-HHHHHHc------CC-----eEEECCHHHHHHhCCEEEE
Confidence            699999999999999987 4555    3799999987542 2211111      01     1223578888999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                      |+| ......++ ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            998 33345544 3444567888999999854  36666665554

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.15  E-value=6.9e-05  Score=73.06  Aligned_cols=172  Identities=15%  Similarity=0.144  Sum_probs=105.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+++....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |=       +|.+.-
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--KD-------VDGl~~  123 (295)
T PRK14174         54 KSCKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--KD-------VDGFHP  123 (295)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cc-------ccccCh
Confidence            34455788887776654 347777776663     24689998865  455554 33443322  31       222211


Q ss_pred             hHHhhCCceEecC-CCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHH
Q 016162          103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (394)
Q Consensus       103 ~~a~~~gI~v~n~-p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~v  180 (394)
                      .   ..|-...+. .......+|.-++-++    +                     +.+.++.||++.|||-+. +|+.+
T Consensus       124 ~---n~g~l~~~~~~~~~~PcTp~ail~ll----~---------------------~y~i~l~Gk~vvViGrS~iVG~Pl  175 (295)
T PRK14174        124 E---NLGRLVMGHLDKCFVSCTPYGILELL----G---------------------RYNIETKGKHCVVVGRSNIVGKPM  175 (295)
T ss_pred             h---hHHHHhcCCCCCCcCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHH
Confidence            0   001011111 0123445555443222    1                     123579999999999876 69999


Q ss_pred             HHHHHhc---CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH
Q 016162          181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (394)
Q Consensus       181 A~~la~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~  257 (394)
                      |..|.+.   .|++|......                            ..++++.+++||+|+.+++.    .++|..+
T Consensus       176 a~lL~~~~~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIvI~Avg~----~~li~~~  223 (295)
T PRK14174        176 ANLMLQKLKESNCTVTICHSA----------------------------TKDIPSYTRQADILIAAIGK----ARFITAD  223 (295)
T ss_pred             HHHHHhccccCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecCc----cCccCHH
Confidence            9987432   47888765432                            13688999999999999962    2778888


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 016162          258 RLATMKKEAILVNCSRGP  275 (394)
Q Consensus       258 ~l~~mk~gailIN~aRG~  275 (394)
                      .+   |+|+++||++-..
T Consensus       224 ~v---k~GavVIDVgi~~  238 (295)
T PRK14174        224 MV---KPGAVVIDVGINR  238 (295)
T ss_pred             Hc---CCCCEEEEeeccc
Confidence            88   9999999998543

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.15  E-value=1.2e-05  Score=83.12  Aligned_cols=117  Identities=16%  Similarity=0.224  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEEcCCCChhhhh
Q 016162          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH  252 (394)
Q Consensus       176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~lPlt~~t~~  252 (394)
                      ||+.+|++| ..-|.+|.+|||++.+..+ +.+.       .+. ..+...+.+++++++.   +|+|++|+|..+.+..
T Consensus         1 MG~~mA~nL-~~~G~~V~v~nrt~~~~~~-l~~~-------~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~   70 (459)
T PRK09287          1 MGKNLALNI-ASHGYTVAVYNRTPEKTDE-FLAE-------EGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA   70 (459)
T ss_pred             CcHHHHHHH-HhCCCeEEEECCCHHHHHH-HHHh-------hCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            799999998 5789999999999876422 2111       010 0112345789998875   8999999999988888


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP  303 (394)
                      ++ .+.+..+.+|.++||+++...-|+..+.+.+++..+.....=|.-.++
T Consensus        71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            88 568899999999999999999999999999988777666655666554

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.14  E-value=0.00014  Score=70.48  Aligned_cols=168  Identities=16%  Similarity=0.220  Sum_probs=106.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+++....++ ..+++|+.+.+.     ++.|+|++..+  ..+++ .++++.+-.  |=       +|.+--
T Consensus        56 k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KD-------VDGl~~  125 (284)
T PRK14177         56 KACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KD-------VDGVTT  125 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cccCCh
Confidence            34456788887766544 347777776553     25789999865  23443 334443322  31       222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-...+.+ .....++.-++.++    +                     +.+.++.||++.|||-+. +|+.+|
T Consensus       126 ~---n~g~l~~g~~-~~~PcTp~avi~ll----~---------------------~y~i~l~Gk~vvViGrS~iVGkPla  176 (284)
T PRK14177        126 L---SFGKLSMGVE-TYLPCTPYGMVLLL----K---------------------EYGIDVTGKNAVVVGRSPILGKPMA  176 (284)
T ss_pred             h---hHHHHHcCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            0   0111112222 23445565555433    1                     123579999999999876 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.++..                            ..++.+..++||+|+.++..    .+++..+.+  
T Consensus       177 ~lL-~~~~atVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~i--  221 (284)
T PRK14177        177 MLL-TEMNATVTLCHSK----------------------------TQNLPSIVRQADIIVGAVGK----PEFIKADWI--  221 (284)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEeCCC----cCccCHHHc--
Confidence            998 6789999987542                            14788999999999999872    556777666  


Q ss_pred             CCCCcEEEEcCC
Q 016162          262 MKKEAILVNCSR  273 (394)
Q Consensus       262 mk~gailIN~aR  273 (394)
                       |+|+++||++-
T Consensus       222 -k~gavVIDvGi  232 (284)
T PRK14177        222 -SEGAVLLDAGY  232 (284)
T ss_pred             -CCCCEEEEecC
Confidence             79999999985

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=0.00017  Score=69.94  Aligned_cols=171  Identities=16%  Similarity=0.240  Sum_probs=107.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |=       +|.+--
T Consensus        49 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p  118 (287)
T PRK14181         49 KKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--KD-------VDGLHP  118 (287)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--cC-------cccCCh
Confidence            33455688887766654 357777776662     25789999865  345543 44444332  31       222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-.+.+........++.-++.++    +                     +.+.++.||++.|||-+. +|+.+|
T Consensus       119 ~---n~g~l~~g~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla  170 (287)
T PRK14181        119 V---NMGKLLLGETDGFIPCTPAGIIELL----K---------------------YYEIPLHGRHVAIVGRSNIVGKPLA  170 (287)
T ss_pred             h---hHHHHhcCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence            0   0111111221224455565555443    1                     123579999999999886 699999


Q ss_pred             HHHHhcC----CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH
Q 016162          182 RMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (394)
Q Consensus       182 ~~la~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~  257 (394)
                      ..| ..-    ++.|+.....                            ..++++.+++||+|+.+++.    .+++..+
T Consensus       171 ~lL-~~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ADIvV~AvG~----p~~i~~~  217 (287)
T PRK14181        171 ALL-MQKHPDTNATVTLLHSQ----------------------------SENLTEILKTADIIIAAIGV----PLFIKEE  217 (287)
T ss_pred             HHH-HhCcCCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHH
Confidence            988 455    7888876431                            14788999999999999972    3678877


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 016162          258 RLATMKKEAILVNCSRGP  275 (394)
Q Consensus       258 ~l~~mk~gailIN~aRG~  275 (394)
                      .+   |+|+++||++--.
T Consensus       218 ~i---k~GavVIDvGin~  232 (287)
T PRK14181        218 MI---AEKAVIVDVGTSR  232 (287)
T ss_pred             Hc---CCCCEEEEecccc
Confidence            76   7999999998644

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.12  E-value=8.7e-06  Score=77.84  Aligned_cols=104  Identities=16%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCc---EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      +|||||+|+||+.+++.+. ..|.   .+.+|+|+.+.. +.+.+.+       +    +.....+..++++++|+|++|
T Consensus         2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence            7999999999999999874 4443   357899876542 2221111       0    112345788889999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      +| ......++..  + .++++.++|.++  .-+..+.|.+.+..+
T Consensus        69 v~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         69 VR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             eC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            99 3344554432  3 257889999987  346777777777543

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=8.3e-05  Score=72.09  Aligned_cols=168  Identities=18%  Similarity=0.200  Sum_probs=106.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. ++++.+-.  |       -+|.+--
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~  123 (286)
T PRK14184         54 RACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHP  123 (286)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCH
Confidence            34455788887766554 357787776663     24689999865  345543 33443322  2       1222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      ..   .|-...+.++ ....++.-++.++    +                     +.+.++.||++.|||-+. +|+.+|
T Consensus       124 ~N---~g~l~~~~~~-~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~iVG~Pla  174 (286)
T PRK14184        124 EN---MGRLALGLPG-FRPCTPAGVMTLL----E---------------------RYGLSPAGKKAVVVGRSNIVGKPLA  174 (286)
T ss_pred             hh---HHHHhCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence            10   1111112222 3445555444332    1                     123579999999999986 599999


Q ss_pred             HHHHhc----CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH
Q 016162          182 RMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (394)
Q Consensus       182 ~~la~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~  257 (394)
                      ..| ..    -|++|.....+.                            .++.+.+++||+|+.+++    ..++|..+
T Consensus       175 ~lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG----~p~li~~~  221 (286)
T PRK14184        175 LML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIG----RPRFVTAD  221 (286)
T ss_pred             HHH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecC----CCCcCCHH
Confidence            988 55    689988765321                            368899999999999995    35678887


Q ss_pred             HHhcCCCCcEEEEcCC
Q 016162          258 RLATMKKEAILVNCSR  273 (394)
Q Consensus       258 ~l~~mk~gailIN~aR  273 (394)
                      .+   |+|+++||++-
T Consensus       222 ~v---k~GavVIDVGi  234 (286)
T PRK14184        222 MV---KPGAVVVDVGI  234 (286)
T ss_pred             Hc---CCCCEEEEeee
Confidence            77   89999999974

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=0.00011  Score=71.67  Aligned_cols=171  Identities=15%  Similarity=0.182  Sum_probs=106.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|++.+....++ ..+++|+.+.+.     ++.++|++..+  ..+++ .++++.+-.  |=       +|.+.-
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~  123 (297)
T PRK14167         54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KD-------VDGFHP  123 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cC-------cccCCh
Confidence            34455788887766654 356777776663     24689999865  34444 344443322  31       222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-...+.+ .+...++.-++.++=                         +.+.+++||++.|||-+. +|+.+|
T Consensus       124 ~---n~g~l~~g~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla  174 (297)
T PRK14167        124 E---NVGRLVAGDA-RFKPCTPHGIQKLLA-------------------------AAGVDTEGADVVVVGRSDIVGKPMA  174 (297)
T ss_pred             h---hhHHHhCCCC-CCCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCcccHHHHH
Confidence            0   0111111222 244556665554431                         123579999999999876 699999


Q ss_pred             HHHHhcC---CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162          182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (394)
Q Consensus       182 ~~la~~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~  258 (394)
                      ..|.+.+   +++|......                            ..++.+..++||+|+.++-    -.+++..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~  222 (297)
T PRK14167        175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAG----VPELIDGSM  222 (297)
T ss_pred             HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            9884333   8899876431                            2478899999999999985    245777766


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 016162          259 LATMKKEAILVNCSRGP  275 (394)
Q Consensus       259 l~~mk~gailIN~aRG~  275 (394)
                      +   |+|+++||++--.
T Consensus       223 i---k~gaiVIDvGin~  236 (297)
T PRK14167        223 L---SEGATVIDVGINR  236 (297)
T ss_pred             c---CCCCEEEEccccc
Confidence            5   7999999998544

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.09  E-value=4e-06  Score=71.85  Aligned_cols=92  Identities=22%  Similarity=0.277  Sum_probs=53.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -.+|||||.|++|..+++.| ..-|.+|.++ +|+....... ..          ..+  .....+++|++.++|+++++
T Consensus        10 ~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a-~~----------~~~--~~~~~~~~~~~~~aDlv~ia   75 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERA-AA----------FIG--AGAILDLEEILRDADLVFIA   75 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHH-HC------------T--T-----TTGGGCC-SEEEE-
T ss_pred             ccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccccccc-cc----------ccc--cccccccccccccCCEEEEE
Confidence            45899999999999999998 6789988765 5655332111 00          111  11245778899999999999


Q ss_pred             CCCChhhhhcccHHHHhc--CCCCcEEEEcC
Q 016162          244 PVLDKTTYHLINKERLAT--MKKEAILVNCS  272 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~--mk~gailIN~a  272 (394)
                      +|.+ ....+ -++.-..  .++|.+++-+|
T Consensus        76 vpDd-aI~~v-a~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   76 VPDD-AIAEV-AEQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             S-CC-HHHHH-HHHHHCC--S-TT-EEEES-
T ss_pred             echH-HHHHH-HHHHHHhccCCCCcEEEECC
Confidence            9955 33333 2333333  58999999885

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.09  E-value=1.4e-05  Score=77.09  Aligned_cols=107  Identities=20%  Similarity=0.362  Sum_probs=68.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhc-CCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|||||+|.||+.+++.+.+. .+++ +.++|++.... +.+.+.|       +     ...+.++++++.++|+|++|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~~-------~-----~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASKT-------G-----AKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHhc-------C-----CeeECCHHHHhcCCCEEEEc
Confidence            3799999999999999987432 2566 45789887542 2221111       1     12346899999999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde---~aL~~aL~~g~  290 (394)
                      .|.  +...   +-....++.|.-++..+.|.+.|.   +.|.++.+++.
T Consensus        69 a~~--~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g  113 (265)
T PRK13304         69 ASV--NAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN  113 (265)
T ss_pred             CCh--HHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence            883  2221   112233455666666777777764   46666666654

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=0.00019  Score=69.44  Aligned_cols=171  Identities=16%  Similarity=0.141  Sum_probs=109.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+.+..++ ..+++++.+.+.     ++.|+|++..+  ..+++. +++..+-.  |       -+|.+..
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~  122 (282)
T PRK14182         53 KDCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--K-------DADGFHP  122 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence            34455788887766654 347777777663     25689999865  345543 44444332  3       2222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                         ...|-.+.+.++.....+|.-++-++    +                     +.+.+++||++.|||-+. +|+.+|
T Consensus       123 ---~n~g~l~~g~~~~~~PcTp~avi~ll----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla  174 (282)
T PRK14182        123 ---FNVGALSIGIAGVPRPCTPAGVMRML----D---------------------EARVDPKGKRALVVGRSNIVGKPMA  174 (282)
T ss_pred             ---hHHHHHhCCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence               11122223333323455555555433    1                     123579999999999886 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      .+| ..-|++|+.+...                            ..++++..++||+|+.+++.    .++|..+.+  
T Consensus       175 ~lL-~~~~AtVtichs~----------------------------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~i--  219 (282)
T PRK14182        175 MML-LERHATVTIAHSR----------------------------TADLAGEVGRADILVAAIGK----AELVKGAWV--  219 (282)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence            998 6778999887542                            13788999999999999972    567887776  


Q ss_pred             CCCCcEEEEcCCCc
Q 016162          262 MKKEAILVNCSRGP  275 (394)
Q Consensus       262 mk~gailIN~aRG~  275 (394)
                       |+|+++||++--.
T Consensus       220 -k~gaiVIDvGin~  232 (282)
T PRK14182        220 -KEGAVVIDVGMNR  232 (282)
T ss_pred             -CCCCEEEEeecee
Confidence             7999999998544

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=0.00023  Score=68.96  Aligned_cols=200  Identities=20%  Similarity=0.217  Sum_probs=122.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     +..|+|++..+  ..+++ +++++.+-.  |=|-    |+..+.+
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~  127 (284)
T PRK14193         55 RDCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDAD----GLHPTNL  127 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCcc----CCChhhh
Confidence            33455688877666544 357787776663     14689999865  34454 344444432  3111    1111111


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                            |-...+.++ ....++.-++.++=                         +.+.++.||++.|||-+. +|+.+|
T Consensus       128 ------g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrS~~VGkPla  175 (284)
T PRK14193        128 ------GRLVLNEPA-PLPCTPRGIVHLLR-------------------------RYDVELAGAHVVVIGRGVTVGRPIG  175 (284)
T ss_pred             ------hHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence                  111122222 34555655554431                         124589999999999875 699999


Q ss_pred             HHHHhc--CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHH
Q 016162          182 RMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (394)
Q Consensus       182 ~~la~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l  259 (394)
                      ..| ..  .+++|+.+...                            ..++.+.+++||+|+.++..    .++|..+.+
T Consensus       176 ~lL-~~~~~~atVtvchs~----------------------------T~~l~~~~k~ADIvV~AvGk----p~~i~~~~i  222 (284)
T PRK14193        176 LLL-TRRSENATVTLCHTG----------------------------TRDLAAHTRRADIIVAAAGV----AHLVTADMV  222 (284)
T ss_pred             HHH-hhccCCCEEEEeCCC----------------------------CCCHHHHHHhCCEEEEecCC----cCccCHHHc
Confidence            988 45  68999877532                            14788999999999999873    357887766


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcH
Q 016162          260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (394)
Q Consensus       260 ~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (394)
                         |+|+++||++.-.+          .+|++.|   ||- .+ .     .+. --.+||-=||--.
T Consensus       223 ---k~GavVIDvGin~~----------~~gkl~G---Dvd-~~-v-----~~~-a~~iTPVPGGVGp  265 (284)
T PRK14193        223 ---KPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-V-----WEV-AGAVSPNPGGVGP  265 (284)
T ss_pred             ---CCCCEEEEcccccc----------CCCcEEe---ecC-Hh-H-----Hhh-CCEEeCCCCChhH
Confidence               79999999986543          2354433   554 21 1     111 1268998777544

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.07  E-value=9.6e-06  Score=72.70  Aligned_cols=110  Identities=20%  Similarity=0.276  Sum_probs=68.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CCCCc------------ccccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV------------TWKRA  227 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~  227 (394)
                      ..+...++.|+|.|+.|+..++.+ +++|++|..+|.++... .+....+.....-. +....            .....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERL-RQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE   93 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHH-HHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHH-HhhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence            356778999999999999999996 89999999999887542 11111110000000 00000            00111


Q ss_pred             CCHHHHhcccCEEEEc-CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       228 ~~l~ell~~aDiV~l~-lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ..+.+.++.+|+|+.+ +--....-.++.++.++.|||+++++|+|
T Consensus        94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            2477889999999853 33355667899999999999999999986

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.06  E-value=3.7e-05  Score=72.63  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=66.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcC--CcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.+|+|||.|++|+.+++.+++..  ..+ +++++++.....+...+.|       +     .....++++++.++|+|
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~DiV   70 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------N-----VSTTTDWKQHVTSVDTI   70 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------C-----cEEeCChHHHHhcCCEE
Confidence            3568999999999999999874331  233 7788875333333322211       1     11235788999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      ++++|. .....++ ++.-..++ +.++|.++=|  ++.+.|-+.+..
T Consensus        71 iiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~  113 (245)
T PRK07634         71 VLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPK  113 (245)
T ss_pred             EEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence            999993 2333333 22222233 5688988765  455556665543

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=0.00013  Score=71.10  Aligned_cols=171  Identities=17%  Similarity=0.186  Sum_probs=105.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.|+|++..+  ..+++. +++..+-.  |=       +|.+--
T Consensus        56 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~~  125 (297)
T PRK14168         56 KTAHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--KD-------VDGFHP  125 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------ccccCh
Confidence            33455688887666544 357888776663     24689999865  344443 33433322  21       222210


Q ss_pred             hHHhhCCceEecCC-CCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHH
Q 016162          103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (394)
Q Consensus       103 ~~a~~~gI~v~n~p-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~v  180 (394)
                      .   ..|-...+.. ......++.-++.++-                         +.+.++.||++.|||-+. +|+.+
T Consensus       126 ~---n~g~l~~~~~~~~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPl  177 (297)
T PRK14168        126 V---NVGRLMIGGDEVKFLPCTPAGIQEMLV-------------------------RSGVETSGAEVVVVGRSNIVGKPI  177 (297)
T ss_pred             h---hHHHHhcCCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcccHHH
Confidence            0   0111111111 2344555655554432                         124589999999999875 69999


Q ss_pred             HHHHHhcC----CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162          181 ARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (394)
Q Consensus       181 A~~la~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~  256 (394)
                      |..| ..-    +++|+.+...                            ..++.+.+++||+|+.++.    ..+++..
T Consensus       178 a~lL-~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAvG----kp~~i~~  224 (297)
T PRK14168        178 ANMM-TQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAAG----VPNLVKP  224 (297)
T ss_pred             HHHH-HhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEecC----CcCccCH
Confidence            9988 444    7889876431                            1478889999999999986    2456777


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 016162          257 ERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       257 ~~l~~mk~gailIN~aRG~  275 (394)
                      +.+   |+|+++||++.-.
T Consensus       225 ~~i---k~gavVIDvGin~  240 (297)
T PRK14168        225 EWI---KPGATVIDVGVNR  240 (297)
T ss_pred             HHc---CCCCEEEecCCCc
Confidence            766   7999999998644

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=0.00015  Score=70.59  Aligned_cols=171  Identities=16%  Similarity=0.195  Sum_probs=106.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~-~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++. .+++|+.+.+.     +..|+|++..+  ..+++ .++++.+-.  |       -+|.+--
T Consensus        54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~  123 (293)
T PRK14185         54 KACEECGFKSSLIRYESD-VTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--K-------DVDGFHP  123 (293)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence            344557888876665543 46777776553     24689999865  34443 344444332  3       1222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      .   ..|-.....++ ....++.-++.++=                         +.+.++.||++.|||-+. +|+.+|
T Consensus       124 ~---N~g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~GK~vvViGrS~iVGkPla  174 (293)
T PRK14185        124 I---NVGRMSIGLPC-FVSATPNGILELLK-------------------------RYHIETSGKKCVVLGRSNIVGKPMA  174 (293)
T ss_pred             h---hHHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHH
Confidence            1   01111112222 45566665554431                         123579999999999886 599999


Q ss_pred             HHHHhc---CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162          182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (394)
Q Consensus       182 ~~la~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~  258 (394)
                      ..|...   ++++|+.+...                            ..++.+..++||+|+.+++.    .++|..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~  222 (293)
T PRK14185        175 QLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM  222 (293)
T ss_pred             HHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            988422   27899876431                            24788999999999999872    45677766


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 016162          259 LATMKKEAILVNCSRGP  275 (394)
Q Consensus       259 l~~mk~gailIN~aRG~  275 (394)
                      +   |+|+++||++--.
T Consensus       223 v---k~gavVIDvGin~  236 (293)
T PRK14185        223 V---KEGAVVIDVGTTR  236 (293)
T ss_pred             c---CCCCEEEEecCcc
Confidence            5   8999999998643

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.05  E-value=5.1e-05  Score=71.42  Aligned_cols=163  Identities=19%  Similarity=0.183  Sum_probs=103.4

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc---EEEEEcCch----hhH--HHHHHHhhhhhhhhcCCCCccccccCCHH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (394)
                      ..++++++.|+|.|.+|+.+|+.| ...|+   +++.+||+.    ...  +..+...+.   +..+...  + . .++.
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~-~-~~l~   92 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T-G-GTLK   92 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c-c-CCHH
Confidence            468899999999999999999997 57788   499999983    211  111112221   1111111  1 1 3677


Q ss_pred             HHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeccCCCCCCCCccc
Q 016162          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS  310 (394)
Q Consensus       232 ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~-l~gaalDV~~~EP~~~~~L~  310 (394)
                      +.+.++|+|+.+.|     .++++++.++.|+++.++...++.  ..|.-+.+|.+.|. +..-+   .  +.    -..
T Consensus        93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G---~--~~----~~~  156 (226)
T cd05311          93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATG---R--SD----FPN  156 (226)
T ss_pred             HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeC---C--CC----Ccc
Confidence            88899999999987     577888999999999999998843  34443444444332 22222   1  11    124


Q ss_pred             cCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHHcCC
Q 016162          311 EMKNAIVVPHIASASK-----WTREGMATLAALNVLGKIKGY  347 (394)
Q Consensus       311 ~~~nvilTPHia~~t~-----~~~~~~~~~~~~ni~~~l~g~  347 (394)
                      +-.|+++-|-++-...     .--+.|...+++.+-.+..-+
T Consensus       157 Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~  198 (226)
T cd05311         157 QVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEE  198 (226)
T ss_pred             ccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCcc
Confidence            5689999998864221     122556666666666655433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.00  E-value=1.4e-05  Score=81.97  Aligned_cols=102  Identities=19%  Similarity=0.271  Sum_probs=72.1

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|++++|+|.|.||+.+++.| ...| .+|++++|+.... ..+.+.+       +..   .....++.+.+..+|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence            47899999999999999999997 6788 6899999987542 2221111       111   11224677889999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCC----CCcEEEEcCCCcccC
Q 016162          241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVID  278 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk----~gailIN~aRG~~vd  278 (394)
                      +.|++   .+..+++.+.++.+.    ...+++|.+...=+|
T Consensus       245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            99976   445678888876642    245888988644344

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.00  E-value=3.6e-05  Score=71.03  Aligned_cols=94  Identities=20%  Similarity=0.229  Sum_probs=66.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++++|+|.|+||+.+|+++ ...|.+|++-+++.++..+...+..       +..    ....+.++..+.+|+|++.+|
T Consensus         2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~l-------~~~----i~~~~~~dA~~~aDVVvLAVP   69 (211)
T COG2085           2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAAL-------GPL----ITGGSNEDAAALADVVVLAVP   69 (211)
T ss_pred             cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHhh-------ccc----cccCChHHHHhcCCEEEEecc
Confidence            5899999999999999998 5779999988776665444322211       111    123578899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      .. ..... .++...... |.++|++.-.
T Consensus        70 ~~-a~~~v-~~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          70 FE-AIPDV-LAELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HH-HHHhH-HHHHHHHhC-CeEEEecCCC
Confidence            53 33333 255555555 8999998764

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.00  E-value=4.5e-05  Score=71.37  Aligned_cols=116  Identities=23%  Similarity=0.308  Sum_probs=88.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH---hcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l  242 (394)
                      +++|.||+|+||..+++++ ..-|.+|++||+++....+.         ...+.     ....+++++   |..--+|-+
T Consensus         1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~---------~~~ga-----~~a~sl~el~~~L~~pr~vWl   65 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEEL---------KDEGA-----TGAASLDELVAKLSAPRIVWL   65 (300)
T ss_pred             CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHH---------HhcCC-----ccccCHHHHHHhcCCCcEEEE
Confidence            4789999999999999998 68899999999998764332         12222     224567766   456789999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~  299 (394)
                      ++|...-|...| ++.-..+.+|-++|+-+...--|....++.|++..+  ..+||=
T Consensus        66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~G  119 (300)
T COG1023          66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVG  119 (300)
T ss_pred             EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEecc
Confidence            999876666666 566677899999999998888888888888887765  345654

>PLN00203 glutamyl-tRNA reductase

Probab=97.99  E-value=2.5e-05  Score=81.94  Aligned_cols=102  Identities=18%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++.+++|+|||.|.||+.+++.| ...|+ +|++++|+.... +.+...|       +.....+....++.+.+.++|+|
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV  333 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEF-------PDVEIIYKPLDEMLACAAEADVV  333 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence            48899999999999999999997 67887 799999987553 2222222       11111122335677889999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCC-------CcEEEEcCCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKK-------EAILVNCSRGP  275 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~-------gailIN~aRG~  275 (394)
                      +.|+|   ....+|..+.++.+++       .-++||.|-..
T Consensus       334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            99976   4566788888887643       23788887543

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.98  E-value=2.6e-05  Score=69.43  Aligned_cols=81  Identities=21%  Similarity=0.301  Sum_probs=57.3

Q ss_pred             ccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       160 g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +.+++||++.|||-+. +|+.++..| ...|+.|+..+.+.                            .++++.+++||
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~AD   81 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRAD   81 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSS
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------Ccccceeeecc
Confidence            3579999999999995 999999998 68899998775431                            47889999999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      +|+.++..    .++|..+.   +|+|+++||++.-..
T Consensus        82 IVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   82 IVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV  112 (160)
T ss_dssp             EEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred             EEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence            99999862    55676654   489999999987554

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.98  E-value=2.8e-05  Score=74.55  Aligned_cols=102  Identities=23%  Similarity=0.315  Sum_probs=66.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC---cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ++|+|||+|.||+.+++.+ ...|   .+|.+|||+.+.. +...+.|       +     .....+.++++.++|+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence            5799999999999999987 4556   6899999987542 2221111       1     1123577888999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                      |+|. .....++. .....+  +.++|.+.-|-  ..+.|.+.+.
T Consensus        69 ~v~~-~~~~~v~~-~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         69 AVKP-QVMEEVLS-ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             EcCH-HHHHHHHH-HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            9983 23343332 222223  46788776654  4556665554

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.94  E-value=4.2e-05  Score=75.89  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=68.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -+++||||.|.+|+..++.++..+ .-+|.+|||+.+.. +.+.+.    +.+.+   ..+....+.++++++||+|++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~----~~~~g---~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALR----ASDYE---VPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhhC---CcEEEeCCHHHHhccCCEEEEe
Confidence            578999999999999777654333 35899999998763 222221    11111   1223357899999999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +|.   ...++..+.+   |||+.+..++...
T Consensus       200 T~s---~~P~~~~~~l---~~g~~v~~vGs~~  225 (325)
T TIGR02371       200 TPS---RKPVVKADWV---SEGTHINAIGADA  225 (325)
T ss_pred             cCC---CCcEecHHHc---CCCCEEEecCCCC
Confidence            984   3566766544   8999999998543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.93  E-value=4e-05  Score=75.94  Aligned_cols=102  Identities=17%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHH--hhhhhhhhcC----CCCccccccCCHHHHhcccCEEE
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--AYGQFLKANG----EQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      |||+|||+||+.+++.+...-+++|++..............  .|.......+    ....+.....++++++..+|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            69999999999999986444578887654432221111111  1211000000    00001112347999999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .|+|   .+.+..+++.+..|+++++|+-.-
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence            9976   667789999999999999998753

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=4.8e-05  Score=73.96  Aligned_cols=80  Identities=23%  Similarity=0.330  Sum_probs=64.8

Q ss_pred             ccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       160 g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +.+++||++.|||.|. +|+.+|..| ...|++|+.+++..                            .++.+.+++||
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aD  204 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQAD  204 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCC
Confidence            3579999999999998 999999997 68899999887621                            35677789999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +|+.+++ .+.   ++..+.   +|+|++++|++-..
T Consensus       205 IvI~AtG-~~~---~v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        205 IIVGAVG-KPE---LIKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             EEEEccC-CCC---cCCHHH---cCCCCEEEEEEEee
Confidence            9999996 232   577655   68999999997543

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.89  E-value=7.1e-05  Score=73.87  Aligned_cols=108  Identities=18%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..++++|||.|.+|+.+++.+...++ .+|++|+|++++. +++.+.+    ...+   .......++++.+.+||+|+.
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a-~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi~  195 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKA-EALAAEL----RAQG---FDAEVVTDLEAAVRQADIISC  195 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEEE
Confidence            47899999999999999986543345 5899999987652 3333322    1111   112234688999999999988


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                      ++|..   ..++..+   .+++|+ +||+.-........|-..+
T Consensus       196 aT~s~---~pvl~~~---~l~~g~-~i~~ig~~~~~~~El~~~~  232 (314)
T PRK06141        196 ATLST---EPLVRGE---WLKPGT-HLDLVGNFTPDMRECDDEA  232 (314)
T ss_pred             eeCCC---CCEecHH---HcCCCC-EEEeeCCCCcccccCCHHH
Confidence            88743   5566654   458998 5554333333333333333

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.88  E-value=5e-05  Score=74.85  Aligned_cols=99  Identities=20%  Similarity=0.233  Sum_probs=65.0

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      +.|++|+|||.|.||+.+++.+ +..| .+|+++||+..... .+.+.|       +.   ......++.+.+.++|+|+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra~-~la~~~-------g~---~~~~~~~~~~~l~~aDvVi  243 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERAE-ELAKEL-------GG---NAVPLDELLELLNEADVVI  243 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHHH-HHHHHc-------CC---eEEeHHHHHHHHhcCCEEE
Confidence            6899999999999999999997 5555 58999999875432 222222       21   1112235678889999999


Q ss_pred             EcCCCChhhhhcccHHHHhcC-CCCcEEEEcCCCc
Q 016162          242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRGP  275 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~m-k~gailIN~aRG~  275 (394)
                      .++|.. +...++ +..++.. +++.++||++...
T Consensus       244 ~at~~~-~~~~~~-~~~~~~~~~~~~~viDlavPr  276 (311)
T cd05213         244 SATGAP-HYAKIV-ERAMKKRSGKPRLIVDLAVPR  276 (311)
T ss_pred             ECCCCC-chHHHH-HHHHhhCCCCCeEEEEeCCCC
Confidence            999843 332222 3333322 3577888887533

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.88  E-value=9.9e-05  Score=67.50  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=66.7

Q ss_pred             ccccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC----HHH
Q 016162          158 FVGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDE  232 (394)
Q Consensus       158 ~~g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~e  232 (394)
                      +.|.+++||++.|||-+. +|+.+|..| ..-|++|+.+|.+.-....   +.+  .+++.      .....+    +.+
T Consensus        55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~~~---~~~--~~~hs------~t~~~~~~~~l~~  122 (197)
T cd01079          55 PYGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQVFT---RGE--SIRHE------KHHVTDEEAMTLD  122 (197)
T ss_pred             ccCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccccc---ccc--ccccc------cccccchhhHHHH
Confidence            457799999999999987 589999988 6789999999753311000   000  00000      000013    778


Q ss_pred             HhcccCEEEEcCCCChhhhhc-ccHHHHhcCCCCcEEEEcCC
Q 016162          233 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR  273 (394)
Q Consensus       233 ll~~aDiV~l~lPlt~~t~~l-i~~~~l~~mk~gailIN~aR  273 (394)
                      .+++||+|+.+++.    .++ +..+.+   |+|+++||++-
T Consensus       123 ~~~~ADIVIsAvG~----~~~~i~~d~i---k~GavVIDVGi  157 (197)
T cd01079         123 CLSQSDVVITGVPS----PNYKVPTELL---KDGAICINFAS  157 (197)
T ss_pred             HhhhCCEEEEccCC----CCCccCHHHc---CCCcEEEEcCC
Confidence            99999999999983    445 777666   79999999974

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.88  E-value=0.0006  Score=70.99  Aligned_cols=146  Identities=15%  Similarity=0.177  Sum_probs=89.7

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHh--------hhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      ++|+|||+|.+|..+|-.|+. +.|.+|++||.+.... +....+        ..+.+.+ + ..-......++++.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~-~-~~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQ-C-RGKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHH-h-hcCCEEEEcCHHHHHhc
Confidence            579999999999999998853 4579999999887652 221110        0000000 0 00011223567888999


Q ss_pred             cCEEEEcCCCChhh------------hhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec-cCC
Q 016162          237 ADVISLHPVLDKTT------------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV-FED  301 (394)
Q Consensus       237 aDiV~l~lPlt~~t------------~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV-~~~  301 (394)
                      ||++++|+| ||..            .++..  +..-+.+++|.++|.-|+-.+=-++.+..-|.+.. .|.-..| |.+
T Consensus        79 advi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~P  156 (473)
T PLN02353         79 ADIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNP  156 (473)
T ss_pred             CCEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECC
Confidence            999999986 3321            12222  23456679999999999877766778888777531 1211122 455


Q ss_pred             CCCCC----CccccCCceE
Q 016162          302 EPYMK----PGLSEMKNAI  316 (394)
Q Consensus       302 EP~~~----~~L~~~~nvi  316 (394)
                      |-+.+    ..+...|+|+
T Consensus       157 Erl~~G~a~~d~~~p~riV  175 (473)
T PLN02353        157 EFLAEGTAIEDLFKPDRVL  175 (473)
T ss_pred             CccCCCCcccccCCCCEEE
Confidence            65532    2567777876

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.88  E-value=6.4e-05  Score=68.59  Aligned_cols=147  Identities=15%  Similarity=0.190  Sum_probs=78.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      ++|+|||+|.+|..+|..+ ...|.+|++||.+.... +...++.        .+.+.+.. ..-+.....+.++.+.+|
T Consensus         1 M~I~ViGlGyvGl~~A~~l-A~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAAL-AEKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHH-HHTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHH-HhCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence            5899999999999999998 48899999999987642 2111100        00001000 001122345788889999


Q ss_pred             CEEEEcCCCChhhh-h------cc--cHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHcCCcceEEee-ccCCCCCCC
Q 016162          238 DVISLHPVLDKTTY-H------LI--NKERLATMKKEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-VFEDEPYMK  306 (394)
Q Consensus       238 DiV~l~lPlt~~t~-~------li--~~~~l~~mk~gailIN~aRG~~vde~aL~-~aL~~g~l~gaalD-V~~~EP~~~  306 (394)
                      |++++|+| ||... +      +.  -+...+.++++.++|.-|+-.+=-++.+. ..|++....+.-++ +|.+|-+..
T Consensus        78 dv~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~  156 (185)
T PF03721_consen   78 DVVFICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLRE  156 (185)
T ss_dssp             SEEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------T
T ss_pred             ceEEEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCC
Confidence            99999998 44322 2      21  13455667899999999997776666444 44443222111122 245565532


Q ss_pred             ----CccccCCceE
Q 016162          307 ----PGLSEMKNAI  316 (394)
Q Consensus       307 ----~~L~~~~nvi  316 (394)
                          ..+...|+|+
T Consensus       157 G~a~~d~~~~~rvV  170 (185)
T PF03721_consen  157 GRAIEDFRNPPRVV  170 (185)
T ss_dssp             TSHHHHHHSSSEEE
T ss_pred             CCcchhccCCCEEE
Confidence                2467778886

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.87  E-value=0.00046  Score=66.38  Aligned_cols=203  Identities=19%  Similarity=0.246  Sum_probs=122.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--cccc-HHHHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWG-ETLFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~-~~~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|+..+....++ ..+.+|+.+.+.     +..++|++..+  ..++ ..++++...-  |       -+|.+--
T Consensus        53 k~~~~iGi~~~~~~l~~-~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~--K-------DVDG~hp  122 (283)
T COG0190          53 KAAEEIGIASELYDLPE-DITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPE--K-------DVDGFHP  122 (283)
T ss_pred             HHHHHcCCeeEEEeCCC-cCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcC--C-------CccccCh
Confidence            33455687777666544 357888777663     25799998764  2344 2344433221  2       1222211


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH-HHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA  181 (394)
                         ...|-...+ +...-..++.-++-+    +|                     ..+.+++||++.|||-++| |+.+|
T Consensus       123 ---~N~g~L~~~-~~~~~PCTp~gi~~l----l~---------------------~~~i~l~Gk~~vVVGrS~iVGkPla  173 (283)
T COG0190         123 ---YNLGKLAQG-EPGFLPCTPAGIMTL----LE---------------------EYGIDLRGKNVVVVGRSNIVGKPLA  173 (283)
T ss_pred             ---hHhcchhcC-CCCCCCCCHHHHHHH----HH---------------------HhCCCCCCCEEEEECCCCcCcHHHH
Confidence               111222223 333333444443322    22                     1235899999999999986 88999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-+++|.+....                            ..++.+..++||+|+.++-    -.++|..+.+  
T Consensus       174 ~lL-~~~naTVtvcHs~----------------------------T~~l~~~~k~ADIvv~AvG----~p~~i~~d~v--  218 (283)
T COG0190         174 LLL-LNANATVTVCHSR----------------------------TKDLASITKNADIVVVAVG----KPHFIKADMV--  218 (283)
T ss_pred             HHH-HhCCCEEEEEcCC----------------------------CCCHHHHhhhCCEEEEecC----Cccccccccc--
Confidence            998 6789999887542                            1478889999999999985    2566766554  


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHH
Q 016162          262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT  328 (394)
Q Consensus       262 mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~  328 (394)
                       |+|+++||++--.+-+          +++.   =||-..+       .....-.+||--||--+=+
T Consensus       219 -k~gavVIDVGinrv~~----------~kl~---GDVdf~~-------v~~~a~~iTPVPGGVGPmT  264 (283)
T COG0190         219 -KPGAVVIDVGINRVND----------GKLV---GDVDFDS-------VKEKASAITPVPGGVGPMT  264 (283)
T ss_pred             -cCCCEEEecCCccccC----------CceE---eeccHHH-------HHHhhcccCCCCCccCHHH
Confidence             8999999998644322          4433   3664332       1223347888877765543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.87  E-value=0.0001  Score=68.79  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=64.2

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+||| .|+||+.+|+.| ...|.+|++++|+.+.. +.....+...+...+. .... ...+..+.++.+|+|++++
T Consensus         1 MkI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEEC
Confidence            3799997 999999999998 56789999999987542 2211111100110110 0001 1235678899999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  277 (394)
                      |. .....++ ++.-..++ +.++|+++-|--.
T Consensus        77 p~-~~~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        77 PW-DHVLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             CH-HHHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            93 3333433 22223343 5899999877443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.85  E-value=0.0001  Score=73.07  Aligned_cols=118  Identities=18%  Similarity=0.216  Sum_probs=73.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CCC----CccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ----PVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++|+|||.|.||..+|..| ...|.+|.+|||....  +.. ...+-..... +..    ........+. +.+..+|+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~~~--~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRARIG--DEL-RAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHHHH--HHH-HhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            4799999999999999998 5669999999986421  111 1110000000 000    0001112344 567899999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      ++++|. ++....+ ......++++.++|.+..| +...+.+.+.+...++
T Consensus        78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~  125 (341)
T PRK08229         78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV  125 (341)
T ss_pred             EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence            999984 4455554 4455667899999988654 4455667777665444

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.85  E-value=3.9e-05  Score=78.79  Aligned_cols=99  Identities=21%  Similarity=0.273  Sum_probs=69.0

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|++++|+|.|.||+.+++.+ ...|+ +|++++|+.... ..+...+       +.   ......++.+.+..+|+|
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~---~~~~~~~~~~~l~~aDvV  246 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GG---EAIPLDELPEALAEADIV  246 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CC---cEeeHHHHHHHhccCCEE
Confidence            47899999999999999999997 68897 899999987543 2222222       11   111224567778999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcC-----CCCcEEEEcCCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP  275 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~m-----k~gailIN~aRG~  275 (394)
                      +.|+|   ....++..+.++.+     .++.++||.+-..
T Consensus       247 I~aT~---s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr  283 (423)
T PRK00045        247 ISSTG---APHPIIGKGMVERALKARRHRPLLLVDLAVPR  283 (423)
T ss_pred             EECCC---CCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence            99987   33455777777553     3467888887533

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.85  E-value=0.00011  Score=58.45  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=53.1

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      ..+++++++|+|.|.+|+.+++.+ ... +.+|++||+                                        |+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di   57 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI   57 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence            358899999999999999999998 566 567766531                                        99


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ++.+.+.    .+++.++..+.+++++++++++
T Consensus        58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          58 LVTATPA----GVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence            9999873    3445566788899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.84  E-value=6.7e-05  Score=72.00  Aligned_cols=123  Identities=19%  Similarity=0.245  Sum_probs=72.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+|||||+|+||+++++.+. .-+    -++++++|+....               +     .....+..+++.++|+|
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~-~~~~~~~~~i~~~~~~~~~~---------------~-----~~~~~~~~~~~~~~D~V   61 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIE-NSNIIGKENIYYHTPSKKNT---------------P-----FVYLQSNEELAKTCDII   61 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHH-hCCCCCcceEEEECCChhcC---------------C-----eEEeCChHHHHHhCCEE
Confidence            358999999999999999984 333    2589998865320               0     11234677888999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPH  320 (394)
                      ++|+| ...+..++. +....++++.+ |.+.-|  +..+.+.+.+...+   -...+-.+.|    -++..-.++++|.
T Consensus        62 ilavk-p~~~~~vl~-~i~~~l~~~~i-IS~~aG--i~~~~l~~~~~~~~---~vvr~mPn~p----~~~g~g~t~i~~~  129 (260)
T PTZ00431         62 VLAVK-PDLAGKVLL-EIKPYLGSKLL-ISICGG--LNLKTLEEMVGVEA---KIVRVMPNTP----SLVGQGSLVFCAN  129 (260)
T ss_pred             EEEeC-HHHHHHHHH-HHHhhccCCEE-EEEeCC--ccHHHHHHHcCCCC---eEEEECCCch----hHhcceeEEEEeC
Confidence            99998 334555543 33334555544 554443  33455554443221   1122333322    2455566777774

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.82  E-value=0.00012  Score=70.36  Aligned_cols=100  Identities=24%  Similarity=0.337  Sum_probs=72.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++|||||+|+||+.++.-+ ..-|    -+|++.+|+.+.+. ...+.|+       ..     ...+..++..++|+|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~g-------~~-----~~~~~~~~~~~advv~   67 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEYG-------VV-----TTTDNQEAVEEADVVF   67 (266)
T ss_pred             ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHcC-------Cc-----ccCcHHHHHhhCCEEE
Confidence            5899999999999999887 4555    68999999987653 2333442       11     1457788999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 016162          242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk---~gailIN~aRG~~vde~aL~~aL~  287 (394)
                      +++.  |...    ++.++.++   ++.++|.++=|-.  .+.|.+++.
T Consensus        68 LavK--Pq~~----~~vl~~l~~~~~~~lvISiaAGv~--~~~l~~~l~  108 (266)
T COG0345          68 LAVK--PQDL----EEVLSKLKPLTKDKLVISIAAGVS--IETLERLLG  108 (266)
T ss_pred             EEeC--hHhH----HHHHHHhhcccCCCEEEEEeCCCC--HHHHHHHcC
Confidence            9997  4322    55566665   7999999987754  455665554

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.82  E-value=0.0002  Score=62.50  Aligned_cols=80  Identities=21%  Similarity=0.330  Sum_probs=64.5

Q ss_pred             ccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       160 g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      |.+++||++.|+|-+. +|+.+|.+| ...|++|...+.+.                            .++++.+++||
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD   73 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence            4689999999999875 578899887 67899998876421                            36788999999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +|+.+++..    ++|+.+.+   |||+++||++...
T Consensus        74 IVvsAtg~~----~~i~~~~i---kpGa~Vidvg~~~  103 (140)
T cd05212          74 VVVVGSPKP----EKVPTEWI---KPGATVINCSPTK  103 (140)
T ss_pred             EEEEecCCC----CccCHHHc---CCCCEEEEcCCCc
Confidence            999998743    56877664   8999999998644

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.81  E-value=0.00026  Score=77.55  Aligned_cols=145  Identities=19%  Similarity=0.145  Sum_probs=93.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (394)
                      ++|+|||.|.||..+|..++ ..|++|+.||++.+....  .......+.....+...        .......+++ .++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  413 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFK  413 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence            57999999999999999874 669999999998865221  11111111111122111        0112234665 579


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCc
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~n  314 (394)
                      +||+|+=++|-+.+.+.-+-.+.=+.++++++|. |+|.   ++...|...+... -+..++..|.  |....||.+   
T Consensus       414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~p-~r~ig~Hff~--P~~~m~LvE---  484 (737)
T TIGR02441       414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSRP-EKVIGMHYFS--PVDKMQLLE---  484 (737)
T ss_pred             cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCCc-cceEEEeccC--CcccCceEE---
Confidence            9999999999888877767677778899999885 4433   5667788877653 4678888774  322234444   


Q ss_pred             eEEcCCC
Q 016162          315 AIVVPHI  321 (394)
Q Consensus       315 vilTPHi  321 (394)
                      |+-+|+.
T Consensus       485 vv~g~~T  491 (737)
T TIGR02441       485 IITHDGT  491 (737)
T ss_pred             EeCCCCC
Confidence            5545543

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.77  E-value=0.00049  Score=75.06  Aligned_cols=131  Identities=12%  Similarity=0.143  Sum_probs=84.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (394)
                      ++|+|||.|.||..+|..++...|++|+.||++.+.....  .....-+.....+...        ......++++ .++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence            5799999999999999986434799999999987642111  1111111111111110        0112235664 579


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      .||+|+=++|-+.+.+.-+-++.-+.++++++|...+.+  +....|.++++. .-+..++..|.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hffn  445 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFS  445 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence            999999999988887776667777788999888544332  445667777754 34577777774

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.77  E-value=0.00014  Score=70.85  Aligned_cols=120  Identities=12%  Similarity=0.207  Sum_probs=72.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|+|||.|.||..+|..|+ ..|.+|+.|+| .+. .+...+ .+-..... +..........+.++....+|+|++|+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PKR-AKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HHH-HHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence            37999999999999999984 56899999998 432 222111 10000000 000000111345667778999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      |. .++...+ +..-...+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        77 k~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         77 KA-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             cc-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            94 3444443 3333445778888887665 44566777777554443

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.73  E-value=0.00015  Score=71.19  Aligned_cols=97  Identities=12%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ...++++|||.|.+|+..++.++..++. +|.+|+|+..+. +++.+.+    ...+   .... ..+++++++++|+|+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a-~~~a~~~----~~~~---~~~~-~~~~~~av~~aDiVi  193 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASA-AAFCAHA----RALG---PTAE-PLDGEAIPEAVDLVV  193 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHH----HhcC---CeeE-ECCHHHHhhcCCEEE
Confidence            3567999999999999999987444664 799999997653 3333332    1111   1111 368899999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      .|+|.+   ..+|..    .+|||+.++.++.-.
T Consensus       194 taT~s~---~Pl~~~----~~~~g~hi~~iGs~~  220 (304)
T PRK07340        194 TATTSR---TPVYPE----AARAGRLVVAVGAFT  220 (304)
T ss_pred             EccCCC---CceeCc----cCCCCCEEEecCCCC
Confidence            999844   466754    269999999998543

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.73  E-value=0.00022  Score=68.45  Aligned_cols=122  Identities=18%  Similarity=0.168  Sum_probs=69.3

Q ss_pred             HHHHHH-hcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162          180 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (394)
Q Consensus       180 vA~~la-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~  258 (394)
                      +|+.|+ .++..+|++||+++.......         ..|...   ....+ .+.++++|+|++|+|. ..+..++ ++.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~---------~~g~~~---~~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~   65 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAAL---------ELGIID---EASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEI   65 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHH---------HTTSSS---EEESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHH---------HCCCee---eccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHh
Confidence            355552 244589999999987643321         123222   12233 5779999999999993 2344444 556


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCccccCCceEEcCCCC
Q 016162          259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMKNAIVVPHIA  322 (394)
Q Consensus       259 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~----------~~~L~~~~nvilTPHia  322 (394)
                      -..+++|++++|++.-+.--.+++.+.+..+ .     .+....|+.          ...|+.-.++++||+-.
T Consensus        66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~-~-----~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG-V-----RFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS-G-----EEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc-c-----ceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            6679999999999875543333444433311 2     333345652          23688889999999854

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.72  E-value=0.00014  Score=71.80  Aligned_cols=99  Identities=21%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +++||||.|..|+.-++.++.-++. +|.+|+|++... +++.+.    +..   .+..+....++++.+++||+|+.|+
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~-~~~~~~----~~~---~~~~v~~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERA-EAFAAR----LRD---LGVPVVAVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHH-HHHHHH----HHC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHH-HHHHHh----hcc---ccccceeccchhhhcccCCEEEEcc
Confidence            5899999999999999887555666 799999997542 333332    222   1333445679999999999999998


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      |.+..+ .+++.+.   ++||+.++.++....
T Consensus       201 ~s~~~~-P~~~~~~---l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  201 PSTTPA-PVFDAEW---LKPGTHINAIGSYTP  228 (313)
T ss_dssp             --SSEE-ESB-GGG---S-TT-EEEE-S-SST
T ss_pred             CCCCCC-ccccHHH---cCCCcEEEEecCCCC
Confidence            855432 6777654   589999999987544

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.71  E-value=0.0001  Score=71.27  Aligned_cols=96  Identities=27%  Similarity=0.372  Sum_probs=68.0

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      -|.||||+|||||+-|..=|..| +--|.+|++--|.....-+.        ....|     + ...+.+|++++||+|.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k--------A~~dG-----f-~V~~v~ea~k~ADvim   79 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK--------AKEDG-----F-KVYTVEEAAKRADVVM   79 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH--------HHhcC-----C-EeecHHHHhhcCCEEE
Confidence            58999999999999999999998 78888876554433321111        11112     2 2468999999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      +.+|.. ....++..+.-..|++|+.| -.|+|
T Consensus        80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL-~FaHG  110 (338)
T COG0059          80 ILLPDE-QQKEVYEKEIAPNLKEGAAL-GFAHG  110 (338)
T ss_pred             EeCchh-hHHHHHHHHhhhhhcCCceE-Eeccc
Confidence            999943 34556666777888988844 44444

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.69  E-value=0.00064  Score=74.36  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=86.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (394)
                      ++|+|||.|.||..+|..++ ..|++|+.||++.+....  +..+.+-+.+...|...        .......+++ .++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  391 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFE  391 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence            68999999999999999975 669999999998765211  11111111111222111        0112234664 479


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      .||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.  .+....|.+++.. .-+..++..|.
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~-p~r~~g~Hff~  453 (715)
T PRK11730        392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS--TISISLLAKALKR-PENFCGMHFFN  453 (715)
T ss_pred             CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCC-CccEEEEecCC
Confidence            99999999998888877776777788999998855433  3455677777764 34677777774

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.0014  Score=65.65  Aligned_cols=164  Identities=20%  Similarity=0.238  Sum_probs=117.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH---hcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l  242 (394)
                      ..+|+||+|.||+.+|..+ ...|.+|.+|+|+.++..+ +..+       .+.. .....+.+++|+   ++.=--|++
T Consensus         4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~ktd~-f~~~-------~~~~-k~i~~~~sieefV~~Le~PRkI~l   73 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKTDE-FLAE-------RAKG-KNIVPAYSIEEFVASLEKPRKILL   73 (473)
T ss_pred             cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHHHH-HHHh-------CccC-CCccccCcHHHHHHHhcCCceEEE
Confidence            4699999999999999998 5889999999999876433 3322       1111 112234577776   445556666


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (394)
                      ++-...-....| +..+..|.+|=++||-+...--|+..-.++|.+..+.+.+.-|.-.|--.   +. -|.+     |-
T Consensus        74 MVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA---~~-GPSi-----Mp  143 (473)
T COG0362          74 MVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA---RH-GPSI-----MP  143 (473)
T ss_pred             EEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc---cc-CCCc-----CC
Confidence            664321112223 67788899999999999999999999999999999999999999887532   11 2433     34


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016162          323 SASKWTREGMATLAALNVLGKIKGYPIW  350 (394)
Q Consensus       323 ~~t~~~~~~~~~~~~~ni~~~l~g~~~~  350 (394)
                      |.+.++++.+.-+. +.|-+-..|+|.-
T Consensus       144 GG~~eay~~v~pil-~~IaAk~~g~pCc  170 (473)
T COG0362         144 GGQKEAYELVAPIL-TKIAAKVDGEPCC  170 (473)
T ss_pred             CCCHHHHHHHHHHH-HHHHhhcCCCCce
Confidence            77889998887655 6677767787753

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.68  E-value=0.00028  Score=68.58  Aligned_cols=120  Identities=16%  Similarity=0.180  Sum_probs=72.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|+|||.|.||+.+|..| ...|.+|..++|+.+. .+...+. +-... .+..........+++++ ..+|+|++++|
T Consensus         1 m~I~IiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~-~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~k   75 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAAL-AQAGHDVTLVARRGAH-LDALNEN-GLRLE-DGEITVPVLAADDPAEL-GPQDLVILAVK   75 (304)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEECChHH-HHHHHHc-CCccc-CCceeecccCCCChhHc-CCCCEEEEecc
Confidence            3799999999999999998 4668999999986543 2221110 00000 01100001123456665 89999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~g  293 (394)
                      . .++..++ +.....+.+++.+|....| +-.++.+.+.+....+.+
T Consensus        76 ~-~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~  120 (304)
T PRK06522         76 A-YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG  120 (304)
T ss_pred             c-ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence            4 3444443 3344456778888888776 334566666665544443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.68  E-value=0.00069  Score=74.06  Aligned_cols=131  Identities=14%  Similarity=0.119  Sum_probs=86.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (394)
                      ++|+|||.|.||..+|..++...|++|+.||++.+.....  ..+...+.+...+...        .......++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            6899999999999999987436799999999987542111  1111111111122111        011223456 4579


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      .||+|+=++|-+.+.+.-+-++.=+.++|+++|...+.  .+....|.+.+.. .-+..++..|.
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS--~l~i~~la~~~~~-p~r~ig~Hff~  450 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS--SLPIGQIAAAAAR-PEQVIGLHYFS  450 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHHhcCc-ccceEEEecCC
Confidence            99999999998888777666777778999999965444  3556677777754 34677887774

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.67  E-value=0.00076  Score=73.70  Aligned_cols=130  Identities=18%  Similarity=0.163  Sum_probs=85.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (394)
                      ++|+|||.|.||..+|..++ ..|++|+.||++.+....  +....+.+...+.+...        .......+++ .++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  391 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD  391 (714)
T ss_pred             ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence            57999999999999999975 669999999998765221  11111111111122110        0112234564 479


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      +||+|+=++|-+.+.+.-+-++.-+.++++++|-..+.  .++..+|..+++. .-+..++-.|.
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS--~l~i~~ia~~~~~-p~r~ig~Hff~  453 (714)
T TIGR02437       392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTS--TISISLLAKALKR-PENFCGMHFFN  453 (714)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHhhcCC-cccEEEEecCC
Confidence            99999999998888776666777788899999854433  3455677777754 34577777774

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.66  E-value=0.00028  Score=64.41  Aligned_cols=107  Identities=19%  Similarity=0.166  Sum_probs=66.1

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccc---cccCCHHHHhcc
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLRE  236 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~  236 (394)
                      ..++++++.|+|. |.+|+.+++.+ ...|.+|+.++|+... .+...+.+.+   ..+. ....   ....++.+.+++
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l-~~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~~-~~~~~~~~~~~~~~~~~~~   97 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLL-AREGARVVLVGRDLER-AQKAADSLRA---RFGE-GVGAVETSDDAARAAAIKG   97 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHHHh---hcCC-cEEEeeCCCHHHHHHHHhc
Confidence            4688999999995 99999999998 4678999999998643 2222222110   0011 0111   111234577899


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v  277 (394)
                      +|+|+.+.|....+  .+..  -...+++.+++|+.+...+
T Consensus        98 ~diVi~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078          98 ADVVFAAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CCEEEECCCCCcee--chhh--hcccCceeEEEEccCCCCC
Confidence            99999998854421  1111  1124557788888776654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.64  E-value=0.00022  Score=69.16  Aligned_cols=76  Identities=20%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.++++.|+|.|.+|+.+++.| ...| .+|++++|+..+. ++..+.+.    ...  ...+  ..++.+.+..+|+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~----~~~--~~~~--~~~~~~~~~~~Div  189 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFG----ALG--KAEL--DLELQEELADFDLI  189 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhh----hcc--ceee--cccchhccccCCEE
Confidence            57899999999999999999998 6889 6999999987542 22222221    000  0111  01345677899999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      +.++|..
T Consensus       190 InaTp~g  196 (278)
T PRK00258        190 INATSAG  196 (278)
T ss_pred             EECCcCC
Confidence            9999954

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.60  E-value=0.00027  Score=70.31  Aligned_cols=102  Identities=28%  Similarity=0.382  Sum_probs=71.5

Q ss_pred             cccccCCCeEEEEec-ChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      .|.++.|+++.|+|. |.||+.+++.|+...| .+++.++|+... ......++       +.     ....++++.+.+
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el-------~~-----~~i~~l~~~l~~  215 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL-------GG-----GKILSLEEALPE  215 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh-------cc-----ccHHhHHHHHcc
Confidence            345799999999998 8999999999843455 489999987543 22211111       00     122468899999


Q ss_pred             cCEEEEcCCCChhhhh-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 016162          237 ADVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~-li~~~~l~~mk~gailIN~aRG~~vde  279 (394)
                      +|+|+.+.-.   ... +++.+.+   +++.++||.|+..=||.
T Consensus       216 aDiVv~~ts~---~~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        216 ADIVVWVASM---PKGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CCEEEECCcC---CcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence            9999877642   234 3777654   79999999999776663

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.60  E-value=0.00017  Score=70.65  Aligned_cols=135  Identities=14%  Similarity=0.217  Sum_probs=93.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~  243 (394)
                      -.+|||||+|++|+-.|+.+ ...|..|+..||..-...+   ..|+            ...++.+++++ ++.|+|.+|
T Consensus        52 tl~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa---~~yg------------~~~ft~lhdlcerhpDvvLlc  115 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAA---EKYG------------SAKFTLLHDLCERHPDVVLLC  115 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHH---HHhc------------ccccccHHHHHhcCCCEEEEE
Confidence            35799999999999999997 7889999999987633221   2232            12456788876 679999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC--C---CccccCCceEEc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--K---PGLSEMKNAIVV  318 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~--~---~~L~~~~nvilT  318 (394)
                      +. --.+..++-.--++++|.|++++++-.-+...-.++.+-|-+-      .|.....|..  +   +....+|=|+.-
T Consensus       116 ts-ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydk  188 (480)
T KOG2380|consen  116 TS-ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDK  188 (480)
T ss_pred             eh-hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEE
Confidence            85 2344445444457778999999999887777777777666543      3666667753  2   234456766665


Q ss_pred             CCCC
Q 016162          319 PHIA  322 (394)
Q Consensus       319 PHia  322 (394)
                      =.++
T Consensus       189 vRig  192 (480)
T KOG2380|consen  189 VRIG  192 (480)
T ss_pred             eecc
Confidence            5554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.59  E-value=0.00049  Score=68.27  Aligned_cols=97  Identities=15%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..++++|||.|.+|+..++.++...+. +|.+|||++++. +++.+.+    ...  .+.....+.+++++++++|+|++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~----~~~--~~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEI----QSK--FNTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHh--cCCcEEEeCCHHHHHhcCCEEEE
Confidence            467999999999999988776444565 799999987653 3332222    111  11122335788999999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |+|..   ..++.    +.+|+|+.++.++..
T Consensus       199 aT~s~---~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        199 VTNAK---TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             ccCCC---CcchH----HhcCCCcEEEecCCC
Confidence            99844   34554    445999999998764

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.58  E-value=0.00035  Score=69.04  Aligned_cols=96  Identities=14%  Similarity=0.173  Sum_probs=69.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -++++|||.|..++.-++.+...+.. +|.+|+|+++.. +++.+.    +++.+   .......+.++.++.||+|+.+
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~~---~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQALG---FAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhcC---CcEEEECCHHHHhcCCCEEEEe
Confidence            56999999999999999877545544 799999998763 222221    22212   2233357899999999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      +|   .+..+|+.+.+   |||+.++.++..
T Consensus       200 T~---s~~P~~~~~~l---~~G~hi~~iGs~  224 (315)
T PRK06823        200 TP---SREPLLQAEDI---QPGTHITAVGAD  224 (315)
T ss_pred             cC---CCCceeCHHHc---CCCcEEEecCCC
Confidence            87   44577877654   799999999753

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.58  E-value=0.0017  Score=63.80  Aligned_cols=129  Identities=25%  Similarity=0.284  Sum_probs=84.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH---HHHhhhhhhhhcCCCCc--------cccccCCHHHH
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQPV--------TWKRASSMDEV  233 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~l~el  233 (394)
                      -+++||||.|.||+.+|..++. -|.+|+.+|++.......   ..+.+. .+...|....        ......++. .
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~-k~~~~g~l~~~~~~~~l~~i~~~~~~~-~   79 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLE-KLVEKGKLTEEEADAALARITPTTDLA-A   79 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHH-HHHhcCCCChhhHHHHHhhccccCchh-H
Confidence            4799999999999999999754 569999999995432111   111111 1111221111        011123333 6


Q ss_pred             hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      ++.||+|+=.+|-+-+.++-+-++.=...+|+++| -|+|+   +.-.+|.++++ ..=+..++-.|.
T Consensus        80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfN  143 (307)
T COG1250          80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFN  143 (307)
T ss_pred             hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccC
Confidence            89999999999988887776666666778999998 56555   44567788874 444678887775

>PRK06046 alanine dehydrogenase; Validated

Probab=97.57  E-value=0.00048  Score=68.37  Aligned_cols=95  Identities=20%  Similarity=0.291  Sum_probs=66.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -+++||||.|.+|+..++.++...+. +|.+|||+.... +++.+.+.    .  ..+.....+.+++++++ +|+|++|
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~----~--~~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMS----S--VVGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHH----h--hcCceEEEeCCHHHHhh-CCEEEEe
Confidence            46899999999999999887544555 678899987543 22322221    1  01112223568899987 9999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|.+   ..++..+.+   |+|+.+..++.
T Consensus       201 Tps~---~P~~~~~~l---~~g~hV~~iGs  224 (326)
T PRK06046        201 TPSR---KPVVKAEWI---KEGTHINAIGA  224 (326)
T ss_pred             cCCC---CcEecHHHc---CCCCEEEecCC
Confidence            9843   577776655   89999888874

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.51  E-value=0.001  Score=62.63  Aligned_cols=117  Identities=21%  Similarity=0.308  Sum_probs=72.1

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE-cCc---------hhhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .++.|+++.|.|+|++|+.+|+.| ..+|++|++. |..         ....+.+..+..+...   +...   ....+.
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~---~~~~---~~~~~~   99 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL---GFPG---AERITN   99 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc---cCCC---ceecCC
Confidence            468999999999999999999998 6899999944 441         1122222222111100   0000   011122


Q ss_pred             HHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       231 ~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ++++ ..||+++-|.+     .+.++.+...+++ =.+++-.+.+.+-  ..-.+.|+++.+.
T Consensus       100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~  154 (227)
T cd01076         100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL  154 (227)
T ss_pred             ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence            3332 47899998876     5667888888886 4567777777763  4445677766543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.49  E-value=0.00044  Score=69.12  Aligned_cols=100  Identities=17%  Similarity=0.181  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (394)
Q Consensus       177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~  256 (394)
                      |..+|..| ...|.+|++||++.....+...+    .+...|     .....+..+++.+||+|++|+|....+..++ .
T Consensus        32 G~~MA~~L-a~aG~~V~v~Dr~~~~l~~~~~~----~l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~  100 (342)
T PRK12557         32 GSRMAIEF-AEAGHDVVLAEPNRSILSEELWK----KVEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K  100 (342)
T ss_pred             HHHHHHHH-HhCCCeEEEEECCHHHhhHHHHH----HHHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence            78999988 46789999999987532111111    011222     1223578888999999999999655467776 4


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 016162          257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK  287 (394)
Q Consensus       257 ~~l~~mk~gailIN~aRG~~vde-~aL~~aL~  287 (394)
                      +....+++++++||++.+..... +.+.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            67788899999999999877655 55556654

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.48  E-value=0.00086  Score=66.54  Aligned_cols=97  Identities=11%  Similarity=0.106  Sum_probs=67.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..++++|||.|.+|+..++.++...+. +|++|+|+..+. +++.+.+    ...  .+..+....++++.+++||+|+.
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a-~~~a~~~----~~~--~g~~v~~~~~~~~av~~aDiVvt  200 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQL----SSL--LGIDVTAATDPRAAMSGADIIVT  200 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhccCCEEEE
Confidence            357999999999999999987435674 799999998653 2232222    110  11222335689999999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|.+   ..+|..+.   +|+|+.+..++.
T Consensus       201 aT~s~---~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       201 TTPSE---TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             ecCCC---CcEecHHH---cCCCcEEEeeCC
Confidence            98853   46676554   589988877763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.44  E-value=0.0013  Score=65.20  Aligned_cols=96  Identities=19%  Similarity=0.247  Sum_probs=71.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -++++|||.|..+..-.+.++.-++. +|.+|+|++... +++.    ..++..+..  ......|.++++..||+|+.|
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a----~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA----ARLRKRGGE--AVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH----HHHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence            45899999999999999887666776 799999998753 2222    223333322  123467899999999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|.+.   .++..+.+   +||+.+..++.
T Consensus       203 T~s~~---Pil~~~~l---~~G~hI~aiGa  226 (330)
T COG2423         203 TPSTE---PVLKAEWL---KPGTHINAIGA  226 (330)
T ss_pred             cCCCC---CeecHhhc---CCCcEEEecCC
Confidence            98554   77777766   59999999884

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.44  E-value=0.0011  Score=63.89  Aligned_cols=111  Identities=22%  Similarity=0.251  Sum_probs=69.3

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH-hcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~  241 (394)
                      ..+++++|+|.|.+|+.++..+ ...|++|++++|+..+. ++..+.+    ...+.  .   ...++++. +.++|+|+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~----~~~~~--~---~~~~~~~~~~~~~DivI  183 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERF----QRYGE--I---QAFSMDELPLHRVDLII  183 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHH----hhcCc--e---EEechhhhcccCccEEE
Confidence            5688999999999999999998 56789999999987542 2222221    11111  0   11233333 46799999


Q ss_pred             EcCCCCh--hhhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          242 LHPVLDK--TTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       242 l~lPlt~--~t~~-li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      .|+|..-  .... .+.   .+.++++.+++|+.-... ++ .|++..++.
T Consensus       184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~  229 (270)
T TIGR00507       184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL  229 (270)
T ss_pred             ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence            9999642  1111 122   344678888888877554 33 455555543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.43  E-value=0.0029  Score=63.52  Aligned_cols=155  Identities=19%  Similarity=0.204  Sum_probs=96.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH-HHHhhh---------hhhhhcCCCCccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-FVTAYG---------QFLKANGEQPVTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~l~ell~  235 (394)
                      .+|||||+|-||-.+|-.++ .-|.+|++||.+...-..- ..+.|.         ......|.    .....+.++ ++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~----lraTtd~~~-l~   83 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGK----LRATTDPEE-LK   83 (436)
T ss_pred             eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCC----ceEecChhh-cc
Confidence            79999999999999999874 7799999999987642110 000000         00111111    112234544 56


Q ss_pred             ccCEEEEcCCCChhhh-------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CcceEEeecc---CCC
Q 016162          236 EADVISLHPVLDKTTY-------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVF---EDE  302 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~-------~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~l~gaalDV~---~~E  302 (394)
                      .||++++|+| ||-+.       .+.+  +..-..+|+|.++|==|+-.+=-++.++..|.+. .=..+.-|.|   .+|
T Consensus        84 ~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPE  162 (436)
T COG0677          84 ECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPE  162 (436)
T ss_pred             cCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCcc
Confidence            9999999998 55433       1222  2244678999999988887777788888877664 1122334654   444


Q ss_pred             CC-CC---CccccCCceEEcCCCCCCcHHHHHHH
Q 016162          303 PY-MK---PGLSEMKNAIVVPHIASASKWTREGM  332 (394)
Q Consensus       303 P~-~~---~~L~~~~nvilTPHia~~t~~~~~~~  332 (394)
                      -. |.   ..+.+.|+|     |||.|+++.+.+
T Consensus       163 Rv~PG~~~~el~~~~kV-----IgG~tp~~~e~a  191 (436)
T COG0677         163 RVLPGNVLKELVNNPKV-----IGGVTPKCAELA  191 (436)
T ss_pred             ccCCCchhhhhhcCCce-----eecCCHHHHHHH
Confidence            32 22   246677888     488887665443

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.41  E-value=0.00076  Score=67.44  Aligned_cols=96  Identities=17%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -++++|||.|..++.-++.+..-+.. +|++|+|+++.. +++.+.+    ...   +..+....++++.+++||+|+.+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~~----~~~---~~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARNL----AGP---GLRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHHH----Hhc---CCcEEEeCCHHHHHhcCCEEEEe
Confidence            46899999999999988776555555 799999998653 2333222    211   22233457899999999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|. .+...+|..+.+   |||+.+.-++
T Consensus       201 T~S-~~~~Pvl~~~~l---kpG~hV~aIG  225 (346)
T PRK07589        201 TAD-KTNATILTDDMV---EPGMHINAVG  225 (346)
T ss_pred             cCC-CCCCceecHHHc---CCCcEEEecC
Confidence            973 222356666544   8999877765

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.41  E-value=0.0007  Score=67.57  Aligned_cols=105  Identities=16%  Similarity=0.170  Sum_probs=65.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--hhhhhhcCC-CCccccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--GQFLKANGE-QPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .+|+|||.|.+|..+|..|+ ..| +|..|.+++... +...+..  ...+. .+. .........++++.++.+|+|++
T Consensus         8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~~-~~i~~~~~~~~~l~-~~~~l~~~i~~t~d~~~a~~~aDlVil   83 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAETA-DDINDNHRNSRYLG-NDVVLSDTLRATTDFAEAANCADVVVM   83 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHHH-HHHHhcCCCcccCC-CCcccCCCeEEECCHHHHHhcCCEEEE
Confidence            57999999999999999984 556 677787765432 1111100  00000 000 01111233578888999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      ++| +..++..+ ++.-..++++..+|++.-|=-
T Consensus        84 avp-s~~~~~vl-~~i~~~l~~~~~vIsl~kGi~  115 (341)
T PRK12439         84 GVP-SHGFRGVL-TELAKELRPWVPVVSLVKGLE  115 (341)
T ss_pred             EeC-HHHHHHHH-HHHHhhcCCCCEEEEEEeCCc
Confidence            999 34445444 334455688888999888643

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.38  E-value=0.00089  Score=65.75  Aligned_cols=96  Identities=16%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -+++||||.|..|+.-++.++.-++. +|.+|+|++.+. +++.+.+    .+.  .+..+....++++.+..||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~----~~~--~~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERF----SKE--FGVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HHh--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            57999999999999988877544555 799999998653 2333322    211  122233457899999999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|.   +..+|..+.+   |||+.++-++.
T Consensus       190 T~s---~~P~~~~~~l---~pg~hV~aiGs  213 (301)
T PRK06407        190 TNS---DTPIFNRKYL---GDEYHVNLAGS  213 (301)
T ss_pred             cCC---CCcEecHHHc---CCCceEEecCC
Confidence            873   4577877655   78887777664

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.35  E-value=0.0013  Score=66.24  Aligned_cols=111  Identities=21%  Similarity=0.308  Sum_probs=67.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHhc------CCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-------CCCccccccCCHH
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQATRLEKFVTAYGQFLKANG-------EQPVTWKRASSMD  231 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~  231 (394)
                      -++|+|||.|..|.++|..++..      ||.+|..|.++.........+....  .+.+       ..+.......+++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~--~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT--KHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh--cCCCcccCCCCcCCCceEEecCHH
Confidence            35899999999999999998543      3578888877753100000111000  0001       0111222346888


Q ss_pred             HHhcccCEEEEcCCCChhhhhcccHHHHh--cCCCCcEEEEcCCCcccCH
Q 016162          232 EVLREADVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       232 ell~~aDiV~l~lPlt~~t~~li~~~~l~--~mk~gailIN~aRG~~vde  279 (394)
                      ++++.||+|++++| +...+.++ .+.-.  .+++++++|+++-|=-.++
T Consensus        89 eav~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         89 EAVEDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             HHHhcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence            99999999999999 23334433 22223  4667889999887754443

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.35  E-value=0.0013  Score=65.04  Aligned_cols=104  Identities=25%  Similarity=0.312  Sum_probs=63.0

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CC-CCccccccCCHHHHh-cccCEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVL-READVISLH  243 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~ell-~~aDiV~l~  243 (394)
                      +|+|||.|.+|..+|..| ...|.+|..|+|+.... +...+. ....... +. .........++++.+ ..+|+|+++
T Consensus         2 kI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~~-~~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia   78 (326)
T PRK14620          2 KISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTTF-ESINTK-RKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA   78 (326)
T ss_pred             EEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHHH-HHHHHc-CCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence            699999999999999998 56789999999976431 211110 0000000 00 001111235677766 589999999


Q ss_pred             CCCChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 016162          244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~-~mk~gailIN~aRG~  275 (394)
                      +| +..+...+ ++... .++++..+|.+.-|-
T Consensus        79 vk-s~~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         79 VP-TQQLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             eC-HHHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            99 34455444 23333 567777777776664

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.33  E-value=0.0012  Score=65.50  Aligned_cols=96  Identities=16%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..++++|||.|.+|+..+..++...+ -+|.+|+|+.++. +++.+.+    ..  ..+..+....++++++.+||+|+.
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a-~~l~~~~----~~--~~g~~v~~~~d~~~al~~aDiVi~  203 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKA-EAYAADL----RA--ELGIPVTVARDVHEAVAGADIIVT  203 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHH----hh--ccCceEEEeCCHHHHHccCCEEEE
Confidence            35799999999999998887643455 4799999987652 3333222    11  111222335789999999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ++|..   ..++..+.   +++|+.+..++
T Consensus       204 aT~s~---~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        204 TTPSE---EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             eeCCC---CcEecHHH---cCCCceEEeeC
Confidence            98843   45666654   46787666543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.32  E-value=0.0024  Score=59.72  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=69.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCch---------hhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .++.|+++.|.|+|++|+.+|+.| ...|.+|++ .|.+.         ....+. ....      .+..........+-
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~-~~~~------~~~~~~~~~~~~~~   90 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINY-AVAL------GGSARVKVQDYFPG   90 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHH-HHhh------CCccccCcccccCc
Confidence            468999999999999999999998 688886655 55543         022211 1111      01111000001122


Q ss_pred             HHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       231 ~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      ++++ ..||+++-|.+     .+.|+.+....++ -.+++-.+.+++-+ + -.+.|++..
T Consensus        91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~-a~~~L~~~G  143 (217)
T cd05211          91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-E-ALRILHERG  143 (217)
T ss_pred             ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-H-HHHHHHHCC
Confidence            3332 47999999987     4478888877776 55777788887755 3 345555543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.31  E-value=0.0011  Score=67.90  Aligned_cols=96  Identities=16%  Similarity=0.267  Sum_probs=65.7

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|+++.|||.|.+|+.+++.| ...|. ++++++|+.... +.+.+.|+       .  .....+.++.+.+.++|+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~ra-~~La~~~~-------~--~~~~~~~~l~~~l~~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEKA-QKITSAFR-------N--ASAHYLSELPQLIKKADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHhc-------C--CeEecHHHHHHHhccCCEE
Confidence            57899999999999999999998 57775 799999987542 33333221       0  1112235667889999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +.|++.   ...+|..+...  .+.-++||.|=
T Consensus       247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLav  274 (414)
T PRK13940        247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISI  274 (414)
T ss_pred             EECcCC---CCeeECHHHhC--CCCeEEEEeCC
Confidence            999873   35566655543  23356677664

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.31  E-value=0.00063  Score=63.10  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=63.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhcccCE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDi  239 (394)
                      -++.|+++.|||.|.+|..-++.| ..+|++|+++++...+......+        .+.  +.+.. ... .+.+..+|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~~--i~~~~~~~~-~~dl~~~~l   72 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QGG--ITWLARCFD-ADILEGAFL   72 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cCC--EEEEeCCCC-HHHhCCcEE
Confidence            368999999999999999999997 68999999999987654433211        121  11211 112 345788999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+.++. +++    +|.......++-.++||++
T Consensus        73 Vi~at~-d~~----ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        73 VIAATD-DEE----LNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             EEECCC-CHH----HHHHHHHHHHHcCCEEEEC
Confidence            888865 332    3455555555556777753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.30  E-value=0.0016  Score=65.95  Aligned_cols=102  Identities=19%  Similarity=0.268  Sum_probs=70.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc-cccccCCHHHHhcccCEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS  241 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  241 (394)
                      -++++|||.|..++.-++.++.-+.  -+|.+|+|++.+. +++.+.+    .+.. .+. .+....+.+++++.||+|+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~----~~~~-~~~~~v~~~~s~~eav~~ADIVv  228 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWV----AETY-PQITNVEVVDSIEEVVRGSDIVT  228 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhc-CCCceEEEeCCHHHHHcCCCEEE
Confidence            4689999999999999988754453  3899999998653 3333322    1110 011 1333578999999999999


Q ss_pred             EcCCCCh---hhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       242 l~lPlt~---~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      .|++.+.   .+..+|..+.+   |||+.++.++.-+
T Consensus       229 taT~s~~~~~s~~Pv~~~~~l---kpG~hv~~ig~~e  262 (379)
T PRK06199        229 YCNSGETGDPSTYPYVKREWV---KPGAFLLMPAACR  262 (379)
T ss_pred             EccCCCCCCCCcCcEecHHHc---CCCcEEecCCccc
Confidence            9998543   34577877655   7999887776533

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.29  E-value=0.0019  Score=63.80  Aligned_cols=87  Identities=17%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|||+|+|+||+.+++.+++.-++++.+ +|++.......             .  .......+.++++.+.|+|++|+
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~--~~v~~~~d~~e~l~~iDVViIct   68 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------E--TPVYAVADDEKHLDDVDVLILCM   68 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------c--CCccccCCHHHhccCCCEEEEcC
Confidence            58999999999999999874344888875 68875322111             0  11122346778889999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |....     -+.....++.|.-+|+..
T Consensus        69 Ps~th-----~~~~~~~L~aG~NVV~s~   91 (324)
T TIGR01921        69 GSATD-----IPEQAPYFAQFANTVDSF   91 (324)
T ss_pred             CCccC-----HHHHHHHHHcCCCEEECC
Confidence            85432     134445567777777774

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.28  E-value=0.0011  Score=66.13  Aligned_cols=105  Identities=18%  Similarity=0.311  Sum_probs=66.6

Q ss_pred             eEEEEecChHHHHHHHHHHh-c------CCcEEEEEcCch---hhHHHHHHHhhhhhhhhcCC-------CCccccccCC
Q 016162          167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGE-------QPVTWKRASS  229 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~-~------~G~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  229 (394)
                      +|+|||.|+.|.++|..++. +      |+.+|..|.+..   .....+   .+..  .+.+.       .+.......+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~---~in~--~~~n~~ylpgi~Lp~~i~at~d   75 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTE---IINT--THENVKYLPGIKLPANLVAVPD   75 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHH---HHHh--cCCCccccCCCcCCCCeEEECC
Confidence            58999999999999998754 2      448999998732   111111   1110  01111       0111223468


Q ss_pred             HHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (394)
Q Consensus       230 l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  278 (394)
                      +++++..||+|++++| +...+.++ .+.-..++++..+|+++-|=-.+
T Consensus        76 l~eal~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        76 LVEAAKGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             HHHHHhcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence            9999999999999999 33444443 34445678899999998875443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.27  E-value=0.0016  Score=64.18  Aligned_cols=110  Identities=22%  Similarity=0.310  Sum_probs=72.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHH-----hhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-----AYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++|+|||.|.-|.++|+.+ ..-|.+|..|.+++....+ ...     .|   + ..-..+.......|++++++.||+|
T Consensus         2 ~kI~ViGaGswGTALA~~l-a~ng~~V~lw~r~~~~~~~-i~~~~~N~~y---L-p~i~lp~~l~at~Dl~~a~~~ad~i   75 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVL-ARNGHEVRLWGRDEEIVAE-INETRENPKY---L-PGILLPPNLKATTDLAEALDGADII   75 (329)
T ss_pred             ceEEEEcCChHHHHHHHHH-HhcCCeeEEEecCHHHHHH-HHhcCcCccc---c-CCccCCcccccccCHHHHHhcCCEE
Confidence            5899999999999999998 4667889988887643211 100     01   0 0001222233356899999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~  283 (394)
                      ++.+| +...+..+. ..-..+++++.+|+++-|=-.+.-.+.
T Consensus        76 v~avP-s~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l~  116 (329)
T COG0240          76 VIAVP-SQALREVLR-QLKPLLLKDAIIVSATKGLEPETGRLL  116 (329)
T ss_pred             EEECC-hHHHHHHHH-HHhhhccCCCeEEEEeccccCCCcchH
Confidence            99999 344444432 222456899999999987655544444

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.25  E-value=0.0021  Score=63.55  Aligned_cols=131  Identities=18%  Similarity=0.276  Sum_probs=74.3

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      +..++|+|||.|.+|..+|..+ ...| .++..||.+.........+.. +.....+ .........+.+ .++.||+|+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l-~~~~~~~l~L~Di~~~~~~g~~lDl~-~~~~~~~-~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLI-LQKNLGDVVLYDVIKGVPQGKALDLK-HFSTLVG-SNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHH-HHCCCCeEEEEECCCccchhHHHHHh-hhccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence            4567999999999999999886 4445 689999997643222112111 0000011 111222235666 679999999


Q ss_pred             EcC--CCChh-hh--------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE--ee
Q 016162          242 LHP--VLDKT-TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD  297 (394)
Q Consensus       242 l~l--Plt~~-t~--------~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~--~g~l~gaa--lD  297 (394)
                      ++.  |..+. ++        .++.  .+.+....|.+++|+++...-+-...+.+.-.  ..++.|.+  ||
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            998  54431 11        1111  12344456888999987644344444444322  34566555  55

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.24  E-value=0.002  Score=59.57  Aligned_cols=107  Identities=16%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCc---hhhHHHH----------HHHhhhhhhhhcCCCCcccc-
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK----------FVTAYGQFLKANGEQPVTWK-  225 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~---~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-  225 (394)
                      ..|..++|+|+|.|.+|..+|..|+ ..|. +++.+|+.   .+.....          ..+.....+.+... ...+. 
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp-~~~i~~   94 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP-YTEIEA   94 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC-CCEEEE
Confidence            4688999999999999999999984 6687 69999987   2110000          00001111111111 01111 


Q ss_pred             -----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          226 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       226 -----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                           ...++++++.++|+|+-| ..+++++.++.......+++..++..
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                 112456678899999999 57889999998888888887766664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.24  E-value=0.00087  Score=68.13  Aligned_cols=101  Identities=23%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      +|+++++.|||.|-||.-+|+.| .+.| .+|++.+|+..+..+ ..+.+       +   ..+....++.+.+.++|+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA~~-La~~~-------~---~~~~~l~el~~~l~~~DvV  242 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERAEE-LAKKL-------G---AEAVALEELLEALAEADVV  242 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHHHH-HHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence            48999999999999999999998 5777 589999999876432 11221       2   1223346777889999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcC-C--CCcEEEEcCCCccc
Q 016162          241 SLHPVLDKTTYHLINKERLATM-K--KEAILVNCSRGPVI  277 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~m-k--~gailIN~aRG~~v  277 (394)
                      +.++.   +...+|..+.+... +  +.-++||.|=..-|
T Consensus       243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPRdi  279 (414)
T COG0373         243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPRDV  279 (414)
T ss_pred             EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCCCC
Confidence            99964   44666766655433 1  12477887754433

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.18  E-value=0.0015  Score=64.35  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=74.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh-cCCCCc-cccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.||..+|.+| ...|.+|.++.|.......    ..+-.+.. .+.... ......+.+ .+..+|+|++|
T Consensus         6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila   79 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAVR----ENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG   79 (313)
T ss_pred             cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHHH----hCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence            5899999999999999998 5679999999886532211    11100000 010000 011112333 46789999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaal  296 (394)
                      ++.. ++...+ +..-...++++.++....| +-.++.|.+.+-..++.++..
T Consensus        80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~  129 (313)
T PRK06249         80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC  129 (313)
T ss_pred             ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence            9843 344332 2333446778888887665 456777777776666655543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.16  E-value=0.0034  Score=61.10  Aligned_cols=78  Identities=19%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.++++.|||.|.+|++++..| ...|+ +|+++||+..+. +...+.+.    .... ........++.+.++++|+|
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~l~----~~~~-~~~~~~~~~~~~~~~~aDiV  196 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADELN----ARFP-AARATAGSDLAAALAAADGL  196 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHHH----hhCC-CeEEEeccchHhhhCCCCEE
Confidence            46789999999999999999997 57887 799999987543 22222211    1000 01112234556678899999


Q ss_pred             EEcCCC
Q 016162          241 SLHPVL  246 (394)
Q Consensus       241 ~l~lPl  246 (394)
                      +.++|.
T Consensus       197 InaTp~  202 (284)
T PRK12549        197 VHATPT  202 (284)
T ss_pred             EECCcC
Confidence            999984

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.14  E-value=0.0018  Score=59.93  Aligned_cols=95  Identities=15%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      -++.|+++.|||.|.+|...++.| ...|++|++++|.......+..+        .+.  +.+....--++-+..+|+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~~--i~~~~~~~~~~~l~~adlV   74 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EGK--IRWKQKEFEPSDIVDAFLV   74 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CCC--EEEEecCCChhhcCCceEE
Confidence            479999999999999999999987 67899999999876544333211        111  1111111113447889999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +.++.. ++..    ......++.+ +++|++
T Consensus        75 iaaT~d-~elN----~~i~~~a~~~-~lvn~~  100 (202)
T PRK06718         75 IAATND-PRVN----EQVKEDLPEN-ALFNVI  100 (202)
T ss_pred             EEcCCC-HHHH----HHHHHHHHhC-CcEEEC
Confidence            998873 3332    2222223334 467764

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.14  E-value=0.0015  Score=60.82  Aligned_cols=97  Identities=22%  Similarity=0.288  Sum_probs=62.2

Q ss_pred             eEEEEecChHHHHHHHHHHhc-CCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEG-FKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +|||||+|.||+.+.+.+..+ .+. .|.+||++.++..+..        .  .   .+.....+++|++++.|+++=|.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~--------~--~---~~~~~~s~ide~~~~~DlvVEaA   68 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELE--------A--S---VGRRCVSDIDELIAEVDLVVEAA   68 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHH--------h--h---cCCCccccHHHHhhccceeeeeC
Confidence            799999999999999987323 234 4789999887643210        0  0   11112368999999999999886


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~a  281 (394)
                      .  ++...-+   ..+.++.|.=+|=+|-|.+.|+.-
T Consensus        69 S--~~Av~e~---~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          69 S--PEAVREY---VPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             C--HHHHHHH---hHHHHhcCCCEEEEechhccChHH
Confidence            5  3332222   233345565566666677776543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.13  E-value=0.0026  Score=62.59  Aligned_cols=127  Identities=16%  Similarity=0.219  Sum_probs=72.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||.|.+|..+|..++ ..|. +|+.+|...........+.+.....  ...........+.++ +++||+|+++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~--~~~~~~i~~t~d~~~-~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPV--GGFDTKVTGTNNYAD-TANSDIVVITA   77 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhc--cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence            48999999999999999874 4443 8999998654322121121111000  001112222357777 79999999998


Q ss_pred             CCChhhh------------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE--ee
Q 016162          245 VLDKTTY------------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD  297 (394)
Q Consensus       245 Plt~~t~------------~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~gaa--lD  297 (394)
                      +. |...            .++.  .+.+....+++++|+++..-=+-...+.+.  +...++.|.+  ||
T Consensus        78 g~-p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        78 GL-PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            72 2211            2221  123444457899999977444444444444  4445566665  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.13  E-value=0.00068  Score=55.75  Aligned_cols=89  Identities=25%  Similarity=0.264  Sum_probs=59.0

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .++|+++.|||.|.+|..-++.| ...|++|+++++.. ...++             .  ..+.. ..+++-+..+|+|+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~-------------~--i~~~~-~~~~~~l~~~~lV~   65 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG-------------L--IQLIR-REFEEDLDGADLVF   65 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT-------------S--CEEEE-SS-GGGCTTESEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh-------------H--HHHHh-hhHHHHHhhheEEE
Confidence            58999999999999999999997 79999999999985 11111             1  11111 23455688899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .+++ +++    +++.....++.-.+++|++-
T Consensus        66 ~at~-d~~----~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   66 AATD-DPE----LNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             E-SS--HH----HHHHHHHHHHHTTSEEEETT
T ss_pred             ecCC-CHH----HHHHHHHHHhhCCEEEEECC
Confidence            8886 233    45555666665667888753

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.11  E-value=0.0017  Score=64.52  Aligned_cols=93  Identities=16%  Similarity=0.116  Sum_probs=61.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++.|+++.|||.|.||+.+++.| ...|. +|++.+|+....      .|.+             .....-+...++|+|
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~------~~~~-------------~~~~~~~~~~~~DvV  230 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL------PYRT-------------VVREELSFQDPYDVI  230 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc------chhh-------------hhhhhhhcccCCCEE
Confidence            58999999999999999999998 67774 799999986421      1100             000111445789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +.|.-.|......+..+.++..++ -++||.|=..
T Consensus       231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR  264 (338)
T PRK00676        231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR  264 (338)
T ss_pred             EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence            997533444455566666655433 3888876443

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.015  Score=57.59  Aligned_cols=166  Identities=16%  Similarity=0.164  Sum_probs=116.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh---cccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l  242 (394)
                      ..+|+||++.||++++-.+ ..-|+.|.+|+|+.++..+ +..      +++.  +.......|++|++   +.--.|++
T Consensus         7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD~-fla------neak--~~~i~ga~S~ed~v~klk~PR~iil   76 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVDE-FLA------NEAK--GTKIIGAYSLEDFVSKLKKPRVIIL   76 (487)
T ss_pred             cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHHH-HHH------Hhhc--CCcccCCCCHHHHHHhcCCCcEEEE
Confidence            4689999999999999887 5889999999999876433 211      1111  12223456888874   45556666


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (394)
                      .+-...-...+| ++....|.+|-++||-+...--|+..=.+.|.+..+.+.+.-|.-.|.-...    -|.+     +-
T Consensus        77 lvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~----GPSl-----Mp  146 (487)
T KOG2653|consen   77 LVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY----GPSL-----MP  146 (487)
T ss_pred             EeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc----CCcc-----CC
Confidence            654333333334 6778889999999999999999999999999988899999999988764321    1211     23


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016162          323 SASKWTREGMATLAALNVLGKIKGYPIWG  351 (394)
Q Consensus       323 ~~t~~~~~~~~~~~~~ni~~~l~g~~~~~  351 (394)
                      |.+.+++.++..++..-....-.|+|.-.
T Consensus       147 Gg~~~Awp~ik~ifq~iaakv~~~epCc~  175 (487)
T KOG2653|consen  147 GGSKEAWPHIKDIFQKIAAKVSDGEPCCD  175 (487)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCCCee
Confidence            66788999887776554333346677433

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.05  E-value=0.0025  Score=66.53  Aligned_cols=75  Identities=21%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +.++.+++++|+|.|.+|+.++..+ ...|++|++++|+..+. +...+.+       +..   .....++.+ +.++|+
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~~---~~~~~~~~~-l~~~Di  393 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QGK---AFPLESLPE-LHRIDI  393 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------ccc---eechhHhcc-cCCCCE
Confidence            4568899999999999999999998 68899999999986542 2211111       100   011122222 578999


Q ss_pred             EEEcCCCC
Q 016162          240 ISLHPVLD  247 (394)
Q Consensus       240 V~l~lPlt  247 (394)
                      |++|+|..
T Consensus       394 VInatP~g  401 (477)
T PRK09310        394 IINCLPPS  401 (477)
T ss_pred             EEEcCCCC
Confidence            99999954

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.05  E-value=0.0016  Score=55.01  Aligned_cols=96  Identities=16%  Similarity=0.283  Sum_probs=53.6

Q ss_pred             eEEEEe-cChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          167 TVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       167 tvGIIG-lG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +|+||| .|.+|+.+.++|++...+++. ++++..... ..+...+.   ...+.....+.. .+. +.+.++|+|++|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADP-EELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSG-HHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cch-hHhhcCCEEEecC
Confidence            699999 999999999999766677754 444444110 01111110   000111111111 233 4459999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |... ... +....   .++|..+||.+.
T Consensus        75 ~~~~-~~~-~~~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   75 PHGA-SKE-LAPKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             CHHH-HHH-HHHHH---HHTTSEEEESSS
T ss_pred             chhH-HHH-HHHHH---hhCCcEEEeCCH
Confidence            9322 222 22222   478999999874

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.05  E-value=0.004  Score=60.77  Aligned_cols=80  Identities=16%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchh--hHHHHHHHhhhhhhhhcCC-CCc---cccccCCHHHHh
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGE-QPV---TWKRASSMDEVL  234 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~l~ell  234 (394)
                      ++.|+++.|+|.|.+|++++..| ...|++ |++++|+.+  .+.++..+.+    ...+. ...   .+....++++.+
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l----~~~~~~~~~~~~d~~~~~~~~~~~  197 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKI----KQEVPECIVNVYDLNDTEKLKAEI  197 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHH----hhcCCCceeEEechhhhhHHHhhh
Confidence            46789999999999999999987 578985 999999862  2222222221    11110 000   011111344556


Q ss_pred             cccCEEEEcCCC
Q 016162          235 READVISLHPVL  246 (394)
Q Consensus       235 ~~aDiV~l~lPl  246 (394)
                      ..+|+|+.++|.
T Consensus       198 ~~~DilINaTp~  209 (289)
T PRK12548        198 ASSDILVNATLV  209 (289)
T ss_pred             ccCCEEEEeCCC
Confidence            778999999984

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.99  E-value=0.0048  Score=63.57  Aligned_cols=119  Identities=11%  Similarity=0.092  Sum_probs=72.4

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE-c----------CchhhHHHHHHHhhhhhhhhc-CCCCccccccC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D----------LYQATRLEKFVTAYGQFLKAN-GEQPVTWKRAS  228 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  228 (394)
                      .++.|+||.|.|+|++|+.+|+.| ..+|++|++. |          ..... +.++.+.....+... ...+.   ...
T Consensus       228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~~-L~~~k~~~~~~l~~~~~~~~~---~~i  302 (445)
T PRK09414        228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLEK-LKEIKEVRRGRISEYAEEFGA---EYL  302 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHH-HHHHHHhcCCchhhhhhhcCC---eec
Confidence            478999999999999999999998 7999999988 5          22221 122111100000000 00000   112


Q ss_pred             CHHHHhc-ccCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          229 SMDEVLR-EADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       229 ~l~ell~-~aDiV~l~lPlt~~t~~li~~~~l~~mk--~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +.++++. .||+++-|..     .+.|+.+....++  +-.+++-.|.|.+ ..+ -.+.|.+..+
T Consensus       303 ~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI  361 (445)
T PRK09414        303 EGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGV  361 (445)
T ss_pred             CCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCc
Confidence            3344443 6999998875     6667777666663  3457788888887 444 3456666544

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.97  E-value=0.0021  Score=61.70  Aligned_cols=128  Identities=17%  Similarity=0.254  Sum_probs=74.6

Q ss_pred             EEEEec-ChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       168 vGIIGl-G~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      |+|||. |.+|..+|..++ ..|    -++..||........ ......+.... . ........+++++.+++||+|++
T Consensus         1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l~~-~~~dl~~~~~~-~-~~~~i~~~~d~~~~~~~aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKLKG-VAMDLQDAVEP-L-ADIKVSITDDPYEAFKDADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccchH-HHHHHHHhhhh-c-cCcEEEECCchHHHhCCCCEEEE
Confidence            589999 999999999874 445    689999987643221 11111111111 1 12233334677889999999999


Q ss_pred             cCCC--Ch---------hhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE-eecc
Q 016162          243 HPVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDVF  299 (394)
Q Consensus       243 ~lPl--t~---------~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~gaa-lDV~  299 (394)
                      +.-.  .+         .+..++.  .+.+....|.+++||++..-=+-...+.+.  +...++.|.+ +|..
T Consensus        77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence            6521  11         1111221  123444558999999964332333344444  4556788888 8754

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.97  E-value=0.0041  Score=51.74  Aligned_cols=67  Identities=25%  Similarity=0.449  Sum_probs=48.3

Q ss_pred             eEEEEecChHHHHHHHHHHhc-CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      ++||||+|.+|+...+.+... -+.++. ++|+++... +.+.+.|       +     ...+.|++++++  +.|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEKY-------G-----IPVYTDLEELLADEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHT-------T-----SEEESSHHHHHHHTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHHh-------c-----ccchhHHHHHHHhhcCCEEEE
Confidence            799999999999998776433 366765 788887543 2222222       1     124679999998  7999999


Q ss_pred             cCCC
Q 016162          243 HPVL  246 (394)
Q Consensus       243 ~lPl  246 (394)
                      ++|.
T Consensus        69 ~tp~   72 (120)
T PF01408_consen   69 ATPP   72 (120)
T ss_dssp             ESSG
T ss_pred             ecCC
Confidence            9994

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.96  E-value=0.0049  Score=59.16  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=62.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhc--CCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH-hcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG--FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~  241 (394)
                      .+|||||+|.||+.+++.+..+  .++++ .+|++.+.. .+.+.          +.    .....+++++ ....|+|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~----------~~----~~~~~~l~~ll~~~~DlVV   67 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALA----------GR----VALLDGLPGLLAWRPDLVV   67 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhh----------cc----CcccCCHHHHhhcCCCEEE
Confidence            5899999999999999987433  23554 456665532 11110          11    2235689997 58899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ  288 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd---e~aL~~aL~~  288 (394)
                      =|..  ++...-.....   ++.|.-++=.|-|.+-|   ++.|.++.++
T Consensus        68 E~A~--~~av~e~~~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         68 EAAG--QQAIAEHAEGC---LTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             ECCC--HHHHHHHHHHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            8876  33222222333   34566677777777777   4455555444

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.83  E-value=0.031  Score=55.23  Aligned_cols=121  Identities=12%  Similarity=0.006  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhh------HHHH---HHHhhhhhhhhcCCCC--------ccccccC--CHHHHhcc
Q 016162          176 IGSAYARMMVEGFKMNLIYYDLYQAT------RLEK---FVTAYGQFLKANGEQP--------VTWKRAS--SMDEVLRE  236 (394)
Q Consensus       176 IG~~vA~~la~~~G~~V~~~d~~~~~------~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~--~l~ell~~  236 (394)
                      ||..+|..++ ..|++|+.||+++..      ..+.   ......+.+...|...        .......  ++.+.+++
T Consensus         1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~   79 (314)
T PRK08269          1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD   79 (314)
T ss_pred             CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence            6889998874 669999999998832      1111   1111111122222211        0111122  36688999


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      ||+|+-++|-+.+.+.-+-.+..+.++++++|..  .-+.+....|.+.++. .=+..++..|.
T Consensus        80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~~-p~r~~g~Hf~~  140 (314)
T PRK08269         80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVAH-PERFLNAHWLN  140 (314)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcCC-cccEEEEecCC
Confidence            9999999999998888777778888999999944  4445666777776653 22456666554

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.79  E-value=0.0014  Score=61.05  Aligned_cols=135  Identities=22%  Similarity=0.293  Sum_probs=80.4

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-----CCcc-----------ccc
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-----QPVT-----------WKR  226 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~  226 (394)
                      ..=+.|+|+|.|.||+.+|+.. ..-|.+|+.+|.+... +.+..+.+.+++.+--.     .+..           ...
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~a-L~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~   86 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDA-LSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT   86 (298)
T ss_pred             ccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHH-HHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence            4456899999999999999985 6889999999998754 33333333333332110     1100           112


Q ss_pred             cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016162          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (394)
Q Consensus       227 ~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP  303 (394)
                      ..++.++++.+|+|+=++--+-+.+.-+-++.=..+|+.+++. |+|.   +...+++.++++. -+.++|..|.+-|
T Consensus        87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvP  160 (298)
T KOG2304|consen   87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVP  160 (298)
T ss_pred             cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCch
Confidence            3455666677777764443222211111122223467777774 5554   4456778888854 5789999887555

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.78  E-value=0.0074  Score=51.32  Aligned_cols=110  Identities=25%  Similarity=0.320  Sum_probs=60.8

Q ss_pred             eEEEEec-ChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          167 TVGVIGA-GRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +|+|+|+ |+||+.+++.+...-|+++ -++|+..+....+   ..+   +-.+....+.....++++++.++|+|+-..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g---~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVG---ELAGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCH---HHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhh---hhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence            7999999 9999999999754478885 4667765221100   000   011122233334579999999999998765


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                        +|+...-.-+..   ++.|.-+|-..+|---++.+.++.+.
T Consensus        76 --~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a  113 (124)
T PF01113_consen   76 --NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELA  113 (124)
T ss_dssp             ---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred             --ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence              344322111222   23466777777776544444444444

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.74  E-value=0.0054  Score=62.08  Aligned_cols=102  Identities=17%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      +++.|||.|.||+.+|..|++.-..+|++.||+..+...- ......   +.............+.+++++.|+|+.++|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i-~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARI-AELIGG---KVEALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHH-Hhhccc---cceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence            6899999999999999998544338999999997653221 110000   000111111223457889999999999999


Q ss_pred             CChhhhhcccHHHH-hcCCCCcEEEEcCCCccc
Q 016162          246 LDKTTYHLINKERL-ATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       246 lt~~t~~li~~~~l-~~mk~gailIN~aRG~~v  277 (394)
                      ..-      +...+ +.++-|.-.++++-....
T Consensus        78 ~~~------~~~i~ka~i~~gv~yvDts~~~~~  104 (389)
T COG1748          78 PFV------DLTILKACIKTGVDYVDTSYYEEP  104 (389)
T ss_pred             chh------hHHHHHHHHHhCCCEEEcccCCch
Confidence            432      22333 456777778888765543

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.73  E-value=0.011  Score=58.05  Aligned_cols=126  Identities=12%  Similarity=0.257  Sum_probs=66.3

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||.|.+|..+|..++. +++ +|+.+|+..+.......+.+ +.....+ .........+.+ .++.||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~-~~~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIA-EAAPVEG-FDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHH-hhhhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence            589999999999999998743 234 99999996654222111111 1011011 111222234564 479999999985


Q ss_pred             --CCChh---------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE
Q 016162          245 --VLDKT---------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG  295 (394)
Q Consensus       245 --Plt~~---------t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~gaa  295 (394)
                        |..+.         +..++.  .+.+....+.+++|+++...=+....+.+.  +...++.|.+
T Consensus        79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g  144 (307)
T PRK06223         79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA  144 (307)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence              32221         112221  112333346778888865433333333332  1123566664

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.70  E-value=0.008  Score=59.73  Aligned_cols=92  Identities=20%  Similarity=0.221  Sum_probs=57.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l  242 (394)
                      .|++|+|+|+|-.|....+. |+++|++|+++|++..+...  ..       +.|........ .+.++++-..+|+++.
T Consensus       166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~--a~-------~lGAd~~i~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLEL--AK-------KLGADHVINSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHH--HH-------HhCCcEEEEcCCchhhHHhHhhCcEEEE
Confidence            48999999999999988887 58999999999999875311  11       12221111111 1123333334888888


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      ++|  +.|-    ...+..++++..++-+
T Consensus       236 tv~--~~~~----~~~l~~l~~~G~~v~v  258 (339)
T COG1064         236 TVG--PATL----EPSLKALRRGGTLVLV  258 (339)
T ss_pred             CCC--hhhH----HHHHHHHhcCCEEEEE
Confidence            887  3322    3455566777666554

>PLN02477 glutamate dehydrogenase

Probab=96.70  E-value=0.013  Score=59.91  Aligned_cols=116  Identities=27%  Similarity=0.334  Sum_probs=72.9

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCc----------hhhHHHHHHHhhhhhhhhcCCCCccccccC
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (394)
                      |.+++|+||.|.|+|++|+.+|+.| ...|++|++ .|.+          ... +.++.+..+. +.  +..+  . ...
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~-L~~~k~~~g~-l~--~~~~--a-~~i  272 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPA-LRKHVAEGGG-LK--GFPG--G-DPI  272 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHH-HHHHHHhcCc-hh--cccc--c-eEe
Confidence            3479999999999999999999997 789999994 4543          221 1111111000 00  0000  0 111


Q ss_pred             CHHHH-hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          229 SMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       229 ~l~el-l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +.+++ ...||+++-|.     ..+.|+++....++ -.+++-.+.+.+ ..+ -.+.|++..+
T Consensus       273 ~~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI  328 (410)
T PLN02477        273 DPDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGV  328 (410)
T ss_pred             cCccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCc
Confidence            33333 35799988774     36678888888875 558888889888 433 3467776654

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.70  E-value=0.0063  Score=58.63  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=59.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|||||+|.||+.+++.+.+.-++++. ++++.......  .+.+       +.   +...+.+++++-.+.|+|+.|.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~--~~~~-------~~---~~~~~~d~~~l~~~~DvVve~t   69 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAV--RRAL-------GE---AVRVVSSVDALPQRPDLVVECA   69 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHH--hhhh-------cc---CCeeeCCHHHhccCCCEEEECC
Confidence            4899999999999999987433356543 33433221110  0000       00   1223467888755689999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde---~aL~~aL~~g~  290 (394)
                      |.... .    +-....++.|.-++-.+-|.+.|.   +.|.++.+++.
T Consensus        70 ~~~~~-~----e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g  113 (265)
T PRK13303         70 GHAAL-K----EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG  113 (265)
T ss_pred             CHHHH-H----HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence            83322 1    222233445555555555544443   44566555544

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.63  E-value=0.0099  Score=56.99  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=45.5

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|+|+ |+||+.+++.+...-++++.+ +|+.......            ...  .+...+.+++++++.+|+|+.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~~~--~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------QGA--LGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------cCC--CCccccCCHHHhccCCCEEEEC
Confidence            47999998 999999998874344788664 7776543111            001  1122346899999899999988


Q ss_pred             CC
Q 016162          244 PV  245 (394)
Q Consensus       244 lP  245 (394)
                      +|
T Consensus        68 t~   69 (257)
T PRK00048         68 TT   69 (257)
T ss_pred             CC
Confidence            76

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.63  E-value=0.014  Score=55.98  Aligned_cols=121  Identities=15%  Similarity=0.124  Sum_probs=72.2

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE-c-------Cchhh--HH---HHHHHhhhhhhhhc-CCCCccccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D-------LYQAT--RL---EKFVTAYGQFLKAN-GEQPVTWKR  226 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d-------~~~~~--~~---~~~~~~~~~~~~~~-~~~~~~~~~  226 (394)
                      .+++|+|+.|-|||++|+.+|+.| ...|++|++. |       +.--.  .+   .+..+.....+... ...+ +.. 
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~-~a~-  110 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYG-TAK-  110 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCC-CCE-
Confidence            578999999999999999999998 7899999944 3       22100  01   00000000000000 0000 011 


Q ss_pred             cCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       227 ~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk--~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      ..+.++++ ..||+++-|.     +.+.|+++....++  +-.+++-.+.|++-.  +-.+.|.+..+
T Consensus       111 ~~~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI  171 (254)
T cd05313         111 YFEGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGV  171 (254)
T ss_pred             EeCCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCc
Confidence            12334443 5799998774     47889998888774  455778888888754  33456666654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.63  E-value=0.0072  Score=50.84  Aligned_cols=98  Identities=11%  Similarity=0.119  Sum_probs=53.9

Q ss_pred             eEEEEe-cChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       167 tvGIIG-lG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++||+| .|.+|+.+++.+...=+.++.+. ++.... .......+..    ............+++  ..++|+|++|+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSA-GKRVSEAGPH----LKGEVVLELEPEDFE--ELAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhc-CcCHHHHCcc----cccccccccccCChh--hcCCCEEEEcC
Confidence            589999 59999999998743337777666 433211 1111111100    000000000112232  25899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |... +...+. .....+++|.++|+++.
T Consensus        74 ~~~~-~~~~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       74 PHGV-SKEIAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             CcHH-HHHHHH-HHHhhhcCCCEEEECCc
Confidence            9543 333322 23456799999999974

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.59  E-value=0.0077  Score=53.47  Aligned_cols=72  Identities=17%  Similarity=0.233  Sum_probs=49.7

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HHHhccc
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREA  237 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~a  237 (394)
                      ..-+|+|++|.|||.|.+|...++.| ...|++|+++++.......+           .+.  ..+.. ..+ ++-+.++
T Consensus         7 ~~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~~l~~-----------l~~--i~~~~-~~~~~~dl~~a   71 (157)
T PRK06719          7 LMFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICKEMKE-----------LPY--ITWKQ-KTFSNDDIKDA   71 (157)
T ss_pred             eEEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCHHHHh-----------ccC--cEEEe-cccChhcCCCc
Confidence            34589999999999999999999997 68999999998765433221           010  11111 111 2236789


Q ss_pred             CEEEEcCC
Q 016162          238 DVISLHPV  245 (394)
Q Consensus       238 DiV~l~lP  245 (394)
                      |+|+.++.
T Consensus        72 ~lViaaT~   79 (157)
T PRK06719         72 HLIYAATN   79 (157)
T ss_pred             eEEEECCC
Confidence            99998876

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.58  E-value=0.0064  Score=59.51  Aligned_cols=38  Identities=18%  Similarity=0.397  Sum_probs=33.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhH
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~  202 (394)
                      .|+.+||+|+|-+|.--.+. |+++|++|+++|+...++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kk  218 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKK  218 (360)
T ss_pred             CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhH
Confidence            79999999999998776676 699999999999987543

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.57  E-value=0.013  Score=48.40  Aligned_cols=83  Identities=17%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhccc
Q 016162          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (394)
Q Consensus       176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~  255 (394)
                      -+..+++.| +..|++|.+|||.........   +       +. ..++....++++.++.+|+|+++++ .++-..+--
T Consensus        18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~---~-------~~-~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~   84 (106)
T PF03720_consen   18 PALELIEEL-KERGAEVSVYDPYVDEEEIKE---L-------GK-LEGVEVCDDLEEALKGADAVVLATD-HDEFRELDW   84 (106)
T ss_dssp             HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHH---H-------CH-HHCEEEESSHHHHHTTESEEEESS---GGGGCCGH
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccChHHHHh---h-------CC-ccceEEecCHHHHhcCCCEEEEEec-CHHHhccCH
Confidence            457788887 788999999999987643221   0       00 0012234689999999999999998 344444322


Q ss_pred             HHHHhcCCCCcEEEEc
Q 016162          256 KERLATMKKEAILVNC  271 (394)
Q Consensus       256 ~~~l~~mk~gailIN~  271 (394)
                      ++....|+++.+|||+
T Consensus        85 ~~~~~~~~~~~~iiD~  100 (106)
T PF03720_consen   85 EEIAKLMRKPPVIIDG  100 (106)
T ss_dssp             HHHHHHSCSSEEEEES
T ss_pred             HHHHHhcCCCCEEEEC
Confidence            4455778899999997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.52  E-value=0.012  Score=61.03  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=72.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      -+++++++|+|+|..|.++|+.| +..|++|.++|...........+    .+...|   +.+.......+.+..+|+|+
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~~~~~~~~~~~~dlVV   82 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSN----ELKELG---VKLVLGENYLDKLDGFDVIF   82 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHH----HHHhCC---CEEEeCCCChHHhccCCEEE
Confidence            36688999999999999999997 79999999999865321110000    012222   11111122245568899998


Q ss_pred             EcCCCChhhhh-----------cccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          242 LHPVLDKTTYH-----------LINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       242 l~lPlt~~t~~-----------li~~-~~l-~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      .. |.-+.+..           ++++ +.+ ...+...+-|--+.|+.--.+-|...|+...
T Consensus        83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            77 33222211           2222 122 2234345667778899988888888887533

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.52  E-value=0.012  Score=58.22  Aligned_cols=129  Identities=16%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++.++|+|||.|.+|..+|..++ ..| ++|+.+|.+.........+.... ....+ .........+.+ .++.||+|+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~-~~~~I~~~~d~~-~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NVIAG-SNSKVIGTNNYE-DIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hhccC-CCeEEEECCCHH-HhCCCCEEE
Confidence            45579999999999999998863 445 48999998876432222221110 00011 111222235664 579999999


Q ss_pred             EcCCC--Ch--------------hhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE
Q 016162          242 LHPVL--DK--------------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG  295 (394)
Q Consensus       242 l~lPl--t~--------------~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~--~g~l~gaa  295 (394)
                      ++.-.  .+              ++..++.  .+.+....|.+++|+++...-+-...+.+.-.  ..++.|.+
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            97621  11              1111221  12233345777999988533333444443321  23566665

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.45  E-value=0.037  Score=49.14  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=66.4

Q ss_pred             CCCeEEEEe--cChHHHHHHHHHHhcCCcEEEEEcCchhh--HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIG--lG~IG~~vA~~la~~~G~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .|+||++||  .+++..+++..+ ..||+++.+..|....  ......+...+.....|   ..+....++++.++++|+
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV   76 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence            488999999  389999999986 7999999999887622  21122110000011111   112234799999999999


Q ss_pred             EEEcCCCC---hh--------hhhcccHHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLD---KT--------TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt---~~--------t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |..-.-.+   .+        ....++++.++.+|++++|.-+.
T Consensus        77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            96554321   11        11457888888888888888874

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.44  E-value=0.024  Score=54.00  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=71.4

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE--------cCchhh--HHHHHHHhhhhhhhhcCC-CCccccccCCH
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGE-QPVTWKRASSM  230 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l  230 (394)
                      +++|+++.|-|+|++|+.+|+.| ...|++|++.        |+..-.  .+.+..+..+..+..... .+.... ..+-
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~  106 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAE-YIPN  106 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSE-EECH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCccccccccccccee-Eecc
Confidence            69999999999999999999998 6889998876        554322  122222221110000000 000001 1123


Q ss_pred             H-HHh-cccCEEEEcCCCChhhhhcccHHHHh-cCCCCcE-EEEcCCCcccCHHHHHHHHHcCCc
Q 016162          231 D-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEAI-LVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       231 ~-ell-~~aDiV~l~lPlt~~t~~li~~~~l~-~mk~gai-lIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      + +++ ..||+++-|--     .+.|+++... .+++++- ++-.+.+.+ ..++.. .|++..+
T Consensus       107 ~~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI  164 (244)
T PF00208_consen  107 DDEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGI  164 (244)
T ss_dssp             HCHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-
T ss_pred             ccccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCC
Confidence            2 555 68999998843     5668888877 7765554 555666665 455554 6666554

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.42  E-value=0.016  Score=57.86  Aligned_cols=80  Identities=20%  Similarity=0.180  Sum_probs=45.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhh-----hcC-CCCccccccCCHHHHhcccC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLK-----ANG-EQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+|||+|+|+||+.+++.+...-++++.+. |+.+ ...+.....++-...     ... ....+.....++++++..+|
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~-~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD   80 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP-DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD   80 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh-HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence            379999999999999998744457887765 4332 211111111100000     000 00011122346788888999


Q ss_pred             EEEEcCCC
Q 016162          239 VISLHPVL  246 (394)
Q Consensus       239 iV~l~lPl  246 (394)
                      +|+.|.|.
T Consensus        81 VVIdaT~~   88 (341)
T PRK04207         81 IVVDATPG   88 (341)
T ss_pred             EEEECCCc
Confidence            99999884

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.42  E-value=0.0076  Score=56.12  Aligned_cols=96  Identities=19%  Similarity=0.246  Sum_probs=67.7

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc-ccCCHHHHhcccC
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREAD  238 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  238 (394)
                      .-++.||+|.|||-|.+|..=++.+ ...|++|+++.+.....+....+       ..+   ..+. ..-+.++ +..++
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~-------~~~---i~~~~~~~~~~~-~~~~~   74 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIE-------EGK---IKWIEREFDAED-LDDAF   74 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHH-------hcC---cchhhcccChhh-hcCce
Confidence            3579999999999999999999987 68999999999988544443222       111   1111 1123444 44499


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|+.+++..     -+|+..+..+++-.+++|+.
T Consensus        75 lviaAt~d~-----~ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          75 LVIAATDDE-----ELNERIAKAARERRILVNVV  103 (210)
T ss_pred             EEEEeCCCH-----HHHHHHHHHHHHhCCceecc
Confidence            999998732     26777777787777888874

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.34  E-value=0.023  Score=56.09  Aligned_cols=124  Identities=18%  Similarity=0.222  Sum_probs=68.5

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-CCC-ccccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQP-VTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .+|+|||.|.+|..+|-.++. +..-++..||.+.........+     +.+.. ... .......+.++ ++.||+|++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D-----l~~~~~~~~~~~v~~~~dy~~-~~~adivvi   77 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD-----LQHGSAFLKNPKIEADKDYSV-TANSKVVIV   77 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH-----HHHhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence            489999999999999987632 4555899999876432222222     11111 001 12222346665 899999998


Q ss_pred             cCC--CCh-hhh-hcc--c-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE
Q 016162          243 HPV--LDK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG  295 (394)
Q Consensus       243 ~lP--lt~-~t~-~li--~-------~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~gaa  295 (394)
                      +.-  ..+ .++ .++  |       .+.+....|.+++|+++..-=+-...+.+.  +...++.|.+
T Consensus        78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~g  145 (312)
T cd05293          78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSG  145 (312)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecC
Confidence            643  222 233 111  1       123444578899999984222222233332  3344555553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.33  E-value=0.015  Score=53.78  Aligned_cols=99  Identities=24%  Similarity=0.259  Sum_probs=59.3

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh--HHH------------HHHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RLE------------KFVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~--~~~------------~~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|.+++|.|+|+|.+|..+|+.| ...|. +++.+|+..-.  .+.            ...+.....++.... .....
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~L-a~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~   95 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYL-AGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA   95 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHH-HHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999998 47777 89999977310  000            000000011111110 00000


Q ss_pred             --ccc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          225 --KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       225 --~~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                        ...  .++++.++++|+|+.|+. +.+++.++++.....
T Consensus        96 ~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~  135 (202)
T TIGR02356        96 LKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVAL  135 (202)
T ss_pred             ehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence              011  235677899999988875 567777777655443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.33  E-value=0.035  Score=53.97  Aligned_cols=79  Identities=18%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|+++.|||.|.+|+.++..| ...|+ +|++++|+.++. +...+.+.    ..... ..+....++.+.+.++|+|
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~----~~~~~-~~~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGV----QVGVI-TRLEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhh----hcCcc-eeccchhhhhhcccCCCEE
Confidence            36789999999999999999987 57887 799999987643 22222211    00000 0000012334566889999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      +.|+|..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9999953

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.32  E-value=0.034  Score=57.23  Aligned_cols=119  Identities=23%  Similarity=0.274  Sum_probs=73.6

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++.+|++.|+|.|.+|.++|+.| ...|++|+++|+..........+.    +...+.   ........++....+|+|+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~~---~~~~~~~~~~~~~~~d~vv   73 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELGI---ELVLGEYPEEFLEGVDLVV   73 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcCC---EEEeCCcchhHhhcCCEEE
Confidence            46799999999999999999998 689999999999753322221111    111121   1222223346678899998


Q ss_pred             EcCCCChhhhhc----------cc-HHH-HhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          242 LHPVLDKTTYHL----------IN-KER-LATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       242 l~lPlt~~t~~l----------i~-~~~-l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      .+.-..+....+          +. .+. ....+...+-|--+.|+..-.+-|...|+.
T Consensus        74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            875433332211          11 111 222233445566678999888888888875

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.29  E-value=0.087  Score=51.06  Aligned_cols=190  Identities=21%  Similarity=0.187  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcC----Cc-------E
Q 016162          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N  191 (394)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~----G~-------~  191 (394)
                      +|--+++-+++.+|-                     .|..|.+.+|.|+|.|.-|-.+|+.+. ..    |+       +
T Consensus         4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~   61 (279)
T cd05312           4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKK   61 (279)
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCe
Confidence            455677777777762                     345788999999999999999999874 44    66       8


Q ss_pred             EEEEcCchh-----hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEEcCCCChhhhhcccHHHHhcCC-
Q 016162          192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  263 (394)
Q Consensus       192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~lPlt~~t~~li~~~~l~~mk-  263 (394)
                      ++.+|+..-     ..+..+...|...   ...     ....+|.|+++  ..|+++=+-    ..-++|.++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~a~~---~~~-----~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~  129 (279)
T cd05312          62 IWLVDSKGLLTKDRKDLTPFKKPFARK---DEE-----KEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAK  129 (279)
T ss_pred             EEEEcCCCeEeCCCCcchHHHHHHHhh---cCc-----ccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHh
Confidence            899987621     1122333344321   110     12358999999  889997653    124789999999998 


Q ss_pred             --CCcEEEEcCCCcc---cCHHHHHHHHHcCC-cceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcH-----HHHHH
Q 016162          264 --KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK-----WTREG  331 (394)
Q Consensus       264 --~gailIN~aRG~~---vde~aL~~aL~~g~-l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~-----~~~~~  331 (394)
                        +..++.=.|+...   +..++.+++ .+|+ |.+.+.-.-..+.--. ...-+..|+++-|-|+-...     .--+.
T Consensus       130 ~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~  208 (279)
T cd05312         130 SNERPIIFALSNPTSKAECTAEDAYKW-TDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDE  208 (279)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHH
Confidence              8999999998765   233333333 2355 4443321111111001 12235679999998875322     12256


Q ss_pred             HHHHHHHHHHHHHcCC
Q 016162          332 MATLAALNVLGKIKGY  347 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~  347 (394)
                      |...+++.+-++..-+
T Consensus       209 m~~aAA~aLA~~~~~~  224 (279)
T cd05312         209 MFLAAAEALASLVTDE  224 (279)
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            6667777777765444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.27  E-value=0.011  Score=60.75  Aligned_cols=78  Identities=14%  Similarity=0.101  Sum_probs=48.5

Q ss_pred             CeEEEEecChHHHHHHH--HHH---hcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIGAGRIGSAYAR--MMV---EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~--~la---~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+|+|||.|.+|...+-  -++   ..-|.+|..||++...... ........+.. ...........|+++.++.||+|
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~-~~~~~~~~~~~-~~~~~~I~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLET-VEILAKKIVEE-LGAPLKIEATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHh-cCCCeEEEEeCCHHHHhcCCCEE
Confidence            37999999999998554  122   1236699999998754221 11111111111 11222333456889999999999


Q ss_pred             EEcCC
Q 016162          241 SLHPV  245 (394)
Q Consensus       241 ~l~lP  245 (394)
                      +.++|
T Consensus        79 i~ai~   83 (423)
T cd05297          79 INTIQ   83 (423)
T ss_pred             EEeeE
Confidence            99998

linked to 3D####ucture

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.23  E-value=0.0093  Score=56.07  Aligned_cols=76  Identities=21%  Similarity=0.270  Sum_probs=50.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccc--cccCCHHHH-hcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW--KRASSMDEV-LREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el-l~~aDiV~l  242 (394)
                      +++.|+|+|..|..+|+.| ...|++|+..|++.....+...+.+.       ...+..  ....-|+++ +.++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~-------~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELD-------THVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcc-------eEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            5799999999999999998 79999999999988764331111111       101100  011235555 788999999


Q ss_pred             cCCCChh
Q 016162          243 HPVLDKT  249 (394)
Q Consensus       243 ~lPlt~~  249 (394)
                      ++..+..
T Consensus        73 ~t~~d~~   79 (225)
T COG0569          73 ATGNDEV   79 (225)
T ss_pred             eeCCCHH
Confidence            9885443

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.21  E-value=0.015  Score=65.60  Aligned_cols=75  Identities=21%  Similarity=0.260  Sum_probs=48.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-------------EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      +.|+|+|||.|.||+..|+.|++.-+.+             |.+.|++..... ...+.|      .+...+.. .+.+.
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~-~la~~~------~~~~~v~l-Dv~D~  639 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAK-ETVEGI------ENAEAVQL-DVSDS  639 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHH-HHHHhc------CCCceEEe-ecCCH
Confidence            4779999999999999999985443444             888999875432 222211      01111111 12344


Q ss_pred             HH---HhcccCEEEEcCCC
Q 016162          231 DE---VLREADVISLHPVL  246 (394)
Q Consensus       231 ~e---ll~~aDiV~l~lPl  246 (394)
                      ++   +++.+|+|++|+|.
T Consensus       640 e~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        640 ESLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHHhhcCCCEEEECCCc
Confidence            44   44789999999995

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.21  E-value=0.12  Score=52.29  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=96.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH-------HHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-------FVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      ++|.|+|.|-+|-..+-.+ ..+|.+|+.+|....+...-       +..+..+.+++... .-+.....+.++.++.+|
T Consensus         1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~-~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA-SGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc-cCcEEEEcCHHHHHhcCC
Confidence            4799999999999999998 58999999999887652110       00011111221111 111223468888999999


Q ss_pred             EEEEcCCCChhhhhccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec-cCCCCCCC-C-
Q 016162          239 VISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV-FEDEPYMK-P-  307 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV-~~~EP~~~-~-  307 (394)
                      ++++|+|..+...+-+|        ++..+.++..+++|+=|+-.+=-.+.+.+-+.+..-.. -.+| +.+|-+.+ + 
T Consensus        79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~A  157 (414)
T COG1004          79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSA  157 (414)
T ss_pred             EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcch
Confidence            99999984443233332        34556677779999999877666666666555443222 3343 44555543 1 


Q ss_pred             --ccccCCceEEcCCCCCCcHHHHHHH
Q 016162          308 --GLSEMKNAIVVPHIASASKWTREGM  332 (394)
Q Consensus       308 --~L~~~~nvilTPHia~~t~~~~~~~  332 (394)
                        ..+.-++++    +|..+..+.+.+
T Consensus       158 v~D~~~PdRIV----iG~~~~~a~~~~  180 (414)
T COG1004         158 VYDFLYPDRIV----IGVRSERAAAVL  180 (414)
T ss_pred             hhhccCCCeEE----EccCChhHHHHH
Confidence              233445666    566665533333

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.19  E-value=0.02  Score=56.07  Aligned_cols=124  Identities=13%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             EEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC-
Q 016162          168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV-  245 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP-  245 (394)
                      |+|||.|.+|..+|..++. +++ +|+.+|++.........+.. +.....+ .........+.+ .++.||+|+++.. 
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~-~~~~~~~-~~~~I~~t~d~~-~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDIS-QAAPILG-SDTKVTGTNDYE-DIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHH-HhhhhcC-CCeEEEEcCCHH-HhCCCCEEEEecCC
Confidence            6899999999999988742 334 99999998653211111111 1011111 111222234555 4899999998763 


Q ss_pred             -CChh---------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCcceEE
Q 016162          246 -LDKT---------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRVG  295 (394)
Q Consensus       246 -lt~~---------t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL--~~g~l~gaa  295 (394)
                       ..+.         +..++.  .+.+....|.+++|+++...-+-...+.+..  ...++.|.+
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence             2111         111111  1223334577788888743323333333321  122455655

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.18  E-value=0.031  Score=46.14  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=54.1

Q ss_pred             EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEEEEc
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH  243 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~l~  243 (394)
                      +.|+|+|.+|+.+++.| +..+.+|++.|+.+.....         ++..+. ........+.+.+    +.++|.|+++
T Consensus         1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~~---------~~~~~~-~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVEE---------LREEGV-EVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHHH---------HHHTTS-EEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHHH---------HHhccc-ccccccchhhhHHhhcCccccCEEEEc
Confidence            57999999999999998 5666799999998865322         122221 1111122333322    6889999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      ++.+..+.  .-...+..+.+...++-
T Consensus        70 ~~~d~~n~--~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   70 TDDDEENL--LIALLARELNPDIRIIA   94 (116)
T ss_dssp             SSSHHHHH--HHHHHHHHHTTTSEEEE
T ss_pred             cCCHHHHH--HHHHHHHHHCCCCeEEE
Confidence            98443333  33444554445555553

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.18  E-value=0.021  Score=58.79  Aligned_cols=120  Identities=11%  Similarity=0.104  Sum_probs=70.4

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch----------hhHHHHHHHhhhhhhhhcCCCCc----ccc
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPV----TWK  225 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~----~~~  225 (394)
                      |.+|.|+||.|.|+|++|+..|+.| ..+|++|++.....          ...+. +..++-.... ......    +. 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~~-~~v~~~~~~~ga-  298 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLYR-GRIREYAEKYGC-  298 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhcC-CchhhhHhhcCC-
Confidence            3579999999999999999999998 79999999844311          01111 0011100000 000000    00 


Q ss_pred             ccCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcC
Q 016162          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       226 ~~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~-ga-ilIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ...+.++++ ..||+++=|.     +.+.|+++....++. |. +++-.|.| ++..++.....+.|
T Consensus       299 ~~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg  359 (444)
T PRK14031        299 KYVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK  359 (444)
T ss_pred             EEcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence            112334443 4689888664     477788888887764 44 56666676 66666665444443

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.18  E-value=0.023  Score=54.18  Aligned_cols=86  Identities=14%  Similarity=0.207  Sum_probs=56.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      -++-|+|.|.+++.+++.+ +.+|++|+++|+++....                           +..+..++.+....|
T Consensus       101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~~---------------------------~~~~~~~~~~~~~~~  152 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEFP---------------------------EDLPDGVATLVTDEP  152 (246)
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCccccc---------------------------ccCCCCceEEecCCH
Confidence            4899999999999999985 899999999998753100                           001123333322222


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                                .+.+..+.+...+|=+.++.-.|.+.|..+|.+.
T Consensus       153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~  186 (246)
T TIGR02964       153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRG  186 (246)
T ss_pred             ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCC
Confidence                      1222234567777777788888888888888443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.16  E-value=0.096  Score=50.06  Aligned_cols=190  Identities=13%  Similarity=0.090  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCc-----------E
Q 016162          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N  191 (394)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~-----------~  191 (394)
                      +|--+++-+++.+|-                     .|+.|.+.++.|.|.|..|-.+|+.+ ...++           +
T Consensus         4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll-~~~~~~~Gls~e~A~~~   61 (254)
T cd00762           4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLI-VXLXVKEGISKEEACKR   61 (254)
T ss_pred             hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHH-HHHHHhcCCCHHHHhcc
Confidence            455677777777762                     34578899999999999999999988 45444           6


Q ss_pred             EEEEcCchhh-----HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEEcCCCChhhhhcccHHHHhcCC-
Q 016162          192 LIYYDLYQAT-----RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  263 (394)
Q Consensus       192 V~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~lPlt~~t~~li~~~~l~~mk-  263 (394)
                      ++.+|+.---     .+..+...+..+.+..       ....+|.|+++  ..|+++=..    ...++|.++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~-------~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~  130 (254)
T cd00762          62 IWXVDRKGLLVKNRKETCPNEYHLARFANPE-------RESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE  130 (254)
T ss_pred             EEEECCCCeEeCCCCccCHHHHHHHHHcCcc-------cccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence            8888876210     0111112211111111       12358999999  999997542    224789999999998 


Q ss_pred             --CCcEEEEcCCCcc---cCHHHHHHHHHcCC-cceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHH-----HHHH
Q 016162          264 --KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKW-----TREG  331 (394)
Q Consensus       264 --~gailIN~aRG~~---vde~aL~~aL~~g~-l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~-----~~~~  331 (394)
                        +..++.=.|+...   +..++.+++= +|+ |.+-+.-.+.++-.-. ...-+..|+++-|-++-....     --+.
T Consensus       131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t-~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~  209 (254)
T cd00762         131 INERPVIFALSNPTSKAECTAEEAYTAT-EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDD  209 (254)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHhhc-CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHH
Confidence              9999999998665   3344444332 243 3333332222211000 123356799999988753321     1255


Q ss_pred             HHHHHHHHHHHHHcC
Q 016162          332 MATLAALNVLGKIKG  346 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g  346 (394)
                      |...+++.+-.+..-
T Consensus       210 m~~aAA~aLA~~v~~  224 (254)
T cd00762         210 VFLSAAEAIASSVTE  224 (254)
T ss_pred             HHHHHHHHHHhhCCh
Confidence            666666666665543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.16  E-value=0.017  Score=57.76  Aligned_cols=94  Identities=20%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh--------------------HHHHHHHhhhhhhhhcCC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKANGE  219 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~~~~  219 (394)
                      ..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|+..-.                    +.+...    ..+++.+.
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~----~~l~~inp   94 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAK----EHLRKINS   94 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHH----HHHHHHCC
Confidence            5699999999999999999999984 6776 78889986410                    000000    11111111


Q ss_pred             -CCcccc----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162          220 -QPVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (394)
Q Consensus       220 -~~~~~~----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~  260 (394)
                       ..+...    ...+++++++++|+|+.++ .+.+++.++++--..
T Consensus        95 ~v~i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~  139 (338)
T PRK12475         95 EVEIVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK  139 (338)
T ss_pred             CcEEEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence             111000    1134678899999999998 467888887765443

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.16  E-value=0.034  Score=57.28  Aligned_cols=121  Identities=13%  Similarity=0.107  Sum_probs=73.6

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEE--------EcCchhh--H---HHHHHHhhhhhhhh--cCCCCccc
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQAT--R---LEKFVTAYGQFLKA--NGEQPVTW  224 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~--------~d~~~~~--~---~~~~~~~~~~~~~~--~~~~~~~~  224 (394)
                      |.++.|+||.|=|+|++|+..|+.| ...|++|++        ||+.--.  .   +.++.+..+..+..  .+..+  .
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~g--a  299 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPG--S  299 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCC--C
Confidence            3479999999999999999999998 789999999        8854321  1   11111111100000  00001  1


Q ss_pred             cccCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          225 KRASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       225 ~~~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk--~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      . ..+.++++ ..||+.+-|.     +.+.|+++....+.  +-.+++-.|.| ++..+|- +.|.+..+
T Consensus       300 ~-~i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI  361 (445)
T PRK14030        300 T-FFAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ  361 (445)
T ss_pred             E-EcCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence            1 11233443 4589887664     57788887777662  34577788888 5666654 55665544

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.14  E-value=0.016  Score=57.22  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=59.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+++|+|||.|.+|..+|-.+ ...|.  ++..+|.+.........+ .    .+...  ..... ...+. +.+++||+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~D-l----~~~~~~~~~~~i-~~~~~-~~~~~adi   76 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMD-L----SHAVPFTSPTKI-YAGDY-SDCKDADL   76 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHH-H----HhhccccCCeEE-EeCCH-HHhCCCCE
Confidence            467999999999999999887 45566  899999866542222222 1    11110  01111 12344 45899999


Q ss_pred             EEEcCC--CChh-hh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016162          240 ISLHPV--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSR  273 (394)
Q Consensus       240 V~l~lP--lt~~-t~-~li--~-------~~~l~~mk~gailIN~aR  273 (394)
                      |+++.-  ..|. ++ .++  |       .+.+....+.+++|+++.
T Consensus        77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            998743  2221 22 111  1       122333347889999873

>PRK11579 putative oxidoreductase; Provisional

Probab=96.00  E-value=0.056  Score=53.84  Aligned_cols=67  Identities=16%  Similarity=0.158  Sum_probs=44.6

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (394)
                      .++||||+|.||+. .+..+.+.-++++. ++|++.....+    .|       +.    ...+.+++++++  +.|+|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~----~~-------~~----~~~~~~~~ell~~~~vD~V~   69 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA----DW-------PT----VTVVSEPQHLFNDPNIDLIV   69 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh----hC-------CC----CceeCCHHHHhcCCCCCEEE
Confidence            48999999999985 45655333478876 57777543211    11       11    123579999996  579999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +|+|..
T Consensus        70 I~tp~~   75 (346)
T PRK11579         70 IPTPND   75 (346)
T ss_pred             EcCCcH
Confidence            999943

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.96  E-value=0.014  Score=53.75  Aligned_cols=90  Identities=16%  Similarity=0.282  Sum_probs=58.7

Q ss_pred             eEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      +++|||- |.+|+.+++.+ +..|+.|+                                        +++||+|++|+|
T Consensus         2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilavP   40 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSVP   40 (197)
T ss_pred             EEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeCC
Confidence            7999998 99999999998 78898773                                        247899999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC--C---ccccCCceEEcCC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--P---GLSEMKNAIVVPH  320 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~--~---~L~~~~nvilTPH  320 (394)
                      - ..+..++     ..+.  .+++|++.-+-    .+.++         ..++...+|+.-  .   .|+  .++++++.
T Consensus        41 v-~~~~~~i-----~~~~--~~v~Dv~SvK~----~i~~~---------~~~~vg~HPMfGp~~a~~~lf--~~~iv~~~   97 (197)
T PRK06444         41 I-DAALNYI-----ESYD--NNFVEISSVKW----PFKKY---------SGKIVSIHPLFGPMSYNDGVH--RTVIFIND   97 (197)
T ss_pred             H-HHHHHHH-----HHhC--CeEEeccccCH----HHHHh---------cCCEEecCCCCCCCcCccccc--ceEEEECC
Confidence            3 2333333     2232  37899976432    12221         225666778642  1   344  47777643

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.95  E-value=0.0091  Score=60.37  Aligned_cols=74  Identities=24%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             EEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEEEcC
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      |+|+|.|.+|+.+++.|++..+. +|++.||+..+... ..+..    .....  .........+++++++++|+|+.|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAER-LAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-HHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-HHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            68999999999999998655556 89999999875322 11100    00000  0001111234778999999999999


Q ss_pred             CC
Q 016162          245 VL  246 (394)
Q Consensus       245 Pl  246 (394)
                      |.
T Consensus        76 gp   77 (386)
T PF03435_consen   76 GP   77 (386)
T ss_dssp             SG
T ss_pred             cc
Confidence            83

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.94  E-value=0.034  Score=46.74  Aligned_cols=102  Identities=14%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             CeEEEEe----cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIG----lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      |++.|||    -|..|..+.+.| +..|.+|+..++.....                 .  +...+.+++|.-...|+++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-----------------~--G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-----------------L--GIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-----------------T--TEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-----------------C--cEEeeccccCCCCCCCEEE
Confidence            6899999    789999999998 67999999999876321                 1  1224568888448899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      +++|. +.+..++. +. ..+..+.+++..+    ..++++.+.+++..+.-.
T Consensus        61 v~~~~-~~~~~~v~-~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi  106 (116)
T PF13380_consen   61 VCVPP-DKVPEIVD-EA-AALGVKAVWLQPG----AESEELIEAAREAGIRVI  106 (116)
T ss_dssp             E-S-H-HHHHHHHH-HH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred             EEcCH-HHHHHHHH-HH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence            99992 23344442 22 2235677888876    566777777777665533

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.93  E-value=0.044  Score=56.08  Aligned_cols=90  Identities=18%  Similarity=0.254  Sum_probs=63.0

Q ss_pred             ccCCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH
Q 016162          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (394)
Q Consensus       162 ~l~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (394)
                      .+.|++|+|+|+          ..-...+++.| ...|++|.+|||........   .+              ....+++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~~--------------~~~~~~~  371 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---GL--------------PLIDDLE  371 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---hc--------------ccCCCHH
Confidence            479999999998          55778899998 68899999999986442110   00              1136888


Q ss_pred             HHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       232 ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      +.++.||.|+++++ .++-+. ++-+.+..+.+..+++|+
T Consensus       372 ~~~~~ad~~v~~t~-~~~~~~-~~~~~~~~~~~~~~v~D~  409 (411)
T TIGR03026       372 EALKGADALVILTD-HDEFKD-LDLEKIKDLMKGKVVVDT  409 (411)
T ss_pred             HHHhCCCEEEEecC-CHHHhc-cCHHHHHHhcCCCEEEeC
Confidence            99999999999987 333332 454555443335578874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.93  E-value=0.011  Score=51.21  Aligned_cols=121  Identities=17%  Similarity=0.157  Sum_probs=69.6

Q ss_pred             EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-CCCccccc-cCCHHHHhcccCEEEEcCC
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKR-ASSMDEVLREADVISLHPV  245 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~lP  245 (394)
                      |.|+|.|.||.-+|-+| +..|.+|..+++.. . .+.. ...+-.+.... ........ ..+..+.....|+|++|+.
T Consensus         1 I~I~G~GaiG~~~a~~L-~~~g~~V~l~~r~~-~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARL-AQAGHDVTLVSRSP-R-LEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHH-HHTTCEEEEEESHH-H-HHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHH-HHCCCceEEEEccc-c-HHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            68999999999999998 46899999999977 2 1211 11110111111 00000001 1122346788999999997


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaa  295 (394)
                      . .++...+.. .-....+++.++-.-.| +-.++.|.+.+...++.++.
T Consensus        77 a-~~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   77 A-YQLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             G-GGHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             c-cchHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            3 344554433 44556677777766555 55566666666444554444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.93  E-value=0.014  Score=50.87  Aligned_cols=107  Identities=21%  Similarity=0.372  Sum_probs=60.5

Q ss_pred             CeEEEEec-ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|||. |++|+.+|-.|.. +++-++..+|+..........+ ..+...   .............+.+++||+|+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D-l~~~~~---~~~~~~~i~~~~~~~~~~aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD-LSHASA---PLPSPVRITSGDYEALKDADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-HHHHHH---GSTEEEEEEESSGGGGTTESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh-hhhhhh---hcccccccccccccccccccEEEEe
Confidence            37999999 9999999987643 5677999999986532222122 100000   0101111122456778999999998


Q ss_pred             C--CCChh-hh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccC
Q 016162          244 P--VLDKT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVID  278 (394)
Q Consensus       244 l--Plt~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vd  278 (394)
                      .  |..+. ++ .++  |.       +.+....|.++++.++.  ++|
T Consensus        77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN--Pvd  122 (141)
T PF00056_consen   77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN--PVD  122 (141)
T ss_dssp             TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS--SHH
T ss_pred             ccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC--cHH
Confidence            7  43332 11 111  11       23333457788888844  455

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.89  E-value=0.011  Score=59.00  Aligned_cols=68  Identities=19%  Similarity=0.335  Sum_probs=46.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ++||||||-|-.|+.++.. ++.+|.+|++.|+.+..-.....+         ............+.++...||+|+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~---------~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVAD---------RVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhccc---------ceeecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999998 589999999999887542221100         0000000011247788999999964

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=95.88  E-value=0.16  Score=50.63  Aligned_cols=103  Identities=12%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH---HhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV---TAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      .+.|+||+++|=+  ++..+.+..+ ..||++|.+..|..-...+...   +.+   .+..|   ..+....++++.+++
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~  225 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKF---AKESG---ARITVTDDIDKAVKG  225 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHH---HHHcC---CeEEEEcCHHHHhCC
Confidence            4789999999986  5778888776 6899999999875422111111   111   11112   223345799999999


Q ss_pred             cCEEEEcC----CCCh---hh------hhcccHHHHhcC-CCCcEEEEc
Q 016162          237 ADVISLHP----VLDK---TT------YHLINKERLATM-KKEAILVNC  271 (394)
Q Consensus       237 aDiV~l~l----Plt~---~t------~~li~~~~l~~m-k~gailIN~  271 (394)
                      ||+|..-.    ....   +.      ...++++.++.+ |++++|.-+
T Consensus       226 aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~  274 (334)
T PRK01713        226 VDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC  274 (334)
T ss_pred             CCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence            99997632    1100   11      123677777775 688888766

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.85  E-value=0.037  Score=53.34  Aligned_cols=74  Identities=18%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|+| +|+||+.+++.+...-++++.+ +|+.......+...      ...+....+...+.+++++...+|+|+.+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~------~~~~~~~~gv~~~~d~~~l~~~~DvVIdf   75 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG------ELAGIGKVGVPVTDDLEAVETDPDVLIDF   75 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH------HhcCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence            3799999 7999999999875456887664 67432211000000      00011111222346888886678999999


Q ss_pred             CC
Q 016162          244 PV  245 (394)
Q Consensus       244 lP  245 (394)
                      .|
T Consensus        76 T~   77 (266)
T TIGR00036        76 TT   77 (266)
T ss_pred             CC
Confidence            87

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=95.85  E-value=0.22  Score=49.08  Aligned_cols=75  Identities=17%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|.+|+++|= +++.++.+..+ ..+|++|....|..-.......+.+   ..+.|   ..+....++++.++++|+|
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvv  221 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVV  221 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEE
Confidence            378999999997 78888888886 6899999999875432111221110   11112   1233457999999999999


Q ss_pred             EEc
Q 016162          241 SLH  243 (394)
Q Consensus       241 ~l~  243 (394)
                      ..-
T Consensus       222 y~~  224 (304)
T PRK00779        222 YTD  224 (304)
T ss_pred             Eec
Confidence            764

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.79  E-value=0.022  Score=58.32  Aligned_cols=110  Identities=20%  Similarity=0.241  Sum_probs=69.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .++|.|||+|.+|.++|+.| +..|.+|.++|++.......   .+   .+.      .+  ....+....++|+|+.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~---~~---~~~------~~--~~~~~~~~~~~dlvV~s~   67 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC---PY---IHE------RY--LENAEEFPEQVDLVVRSP   67 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh---HH---Hhh------hh--cCCcHHHhcCCCEEEECC
Confidence            46899999999999999997 78999999999875431110   00   000      00  113344457899998887


Q ss_pred             CCChhhh----------hcccHHHH--hc--C-CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          245 VLDKTTY----------HLINKERL--AT--M-KKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       245 Plt~~t~----------~li~~~~l--~~--m-k~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      +..+...          .++.+-.+  ..  + +...+-|--+.|+.--.+-|...|+..
T Consensus        68 gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         68 GIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             CCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence            5443211          12333222  22  2 223566777889998888888888763

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.78  E-value=0.1  Score=50.96  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh--hHHHHHHHhhhhhhhhcCCCCccccccC---CHHHHhc
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVLR  235 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ell~  235 (394)
                      ++.|+++.|+|.|..+++++-.+ ...|+ +|++++|+..  .+.+...+.+.    ........+....   .+.+.+.
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l-~~~g~~~i~i~nRt~~~~~ka~~la~~~~----~~~~~~~~~~~~~~~~~l~~~~~  195 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDEFFDKALAFAQRVN----ENTDCVVTVTDLADQQAFAEALA  195 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCccHHHHHHHHHHHhh----hccCceEEEechhhhhhhhhhcc
Confidence            57889999999999999999876 45676 8999999853  22222222211    0000001111111   1334566


Q ss_pred             ccCEEEEcCCC
Q 016162          236 EADVISLHPVL  246 (394)
Q Consensus       236 ~aDiV~l~lPl  246 (394)
                      ++|+|+.++|.
T Consensus       196 ~aDivINaTp~  206 (288)
T PRK12749        196 SADILTNGTKV  206 (288)
T ss_pred             cCCEEEECCCC
Confidence            89999999984

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.76  E-value=0.29  Score=49.31  Aligned_cols=75  Identities=21%  Similarity=0.276  Sum_probs=47.6

Q ss_pred             ccCCCeEEEEecC--------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH---HhhhhhhhhcCCCCccccccCCH
Q 016162          162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV---TAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       162 ~l~gktvGIIGlG--------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .++|+||+|+|.|        ++.++.+..+ ..|||+|.+..|..-...+...   +.+   +...|   ..+....++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~---~~~~g---~~~~~~~d~  239 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKN---AAENG---GKFNIVNSM  239 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHH---HHHcC---CeEEEEcCH
Confidence            4789999999854        3446677765 5899999999886321111111   111   11112   122345799


Q ss_pred             HHHhcccCEEEEc
Q 016162          231 DEVLREADVISLH  243 (394)
Q Consensus       231 ~ell~~aDiV~l~  243 (394)
                      ++.++.+|+|..-
T Consensus       240 ~ea~~~aDvvyt~  252 (357)
T TIGR03316       240 DEAFKDADIVYPK  252 (357)
T ss_pred             HHHhCCCCEEEEC
Confidence            9999999999765

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.74  E-value=0.077  Score=54.58  Aligned_cols=119  Identities=20%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc-cCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV  240 (394)
                      ++.||++.|+|.|.+|.++|+.| ...|++|++.|+......+. .+    .+...|.   .........+++.. .|+|
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g~---~~~~~~~~~~~~~~~~d~v   72 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEGI---KVICGSHPLELLDEDFDLM   72 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcCC---EEEeCCCCHHHhcCcCCEE
Confidence            36789999999999999999998 68999999999764321111 00    1122221   11111123344554 8988


Q ss_pred             EEcC--CCC-hhh-------hhcccHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          241 SLHP--VLD-KTT-------YHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       241 ~l~l--Plt-~~t-------~~li~~~~l-~~m-k~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      +...  |.+ |.-       ..++.+-.| ..+ +...+-|--+.|+.--..-|...|+..
T Consensus        73 V~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         73 VKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            8764  322 211       123333323 233 444566777889998888888888753

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.72  E-value=0.089  Score=54.31  Aligned_cols=123  Identities=19%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCc-------h--hhHH---HHHHHhhhhhhhhcCCCCccccc
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------Q--ATRL---EKFVTAYGQFLKANGEQPVTWKR  226 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~-------~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~  226 (394)
                      +.+++|+||.|=|+|++|+..|+.| ..+|++|+ +-|.+       -  ...+   .+.+......+........+.. 
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~-  309 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAK-  309 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcE-
Confidence            3579999999999999999999997 78999999 44444       0  1111   1111000000000000000011 


Q ss_pred             cCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcC-CCCc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEA-ILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       227 ~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~m-k~ga-ilIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +.+.++++ -.||+.+-|.     +.+.|+.+....+ +.++ +++-.|.+.+-. +|. +.|++..+
T Consensus       310 ~~~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~-~~L~~~GI  370 (454)
T PTZ00079        310 YVPGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EAT-HLFKKNGV  370 (454)
T ss_pred             EeCCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HHH-HHHHHCCc
Confidence            11222332 4689888774     5777888776654 3344 455666666544 443 45665544

>PRK12862 malic enzyme; Reviewed

Probab=95.69  E-value=0.21  Score=55.10  Aligned_cols=186  Identities=17%  Similarity=0.200  Sum_probs=118.7

Q ss_pred             CCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhc
Q 016162          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (394)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~  187 (394)
                      .+|++.|+--   .-+|=.+++-+++.+|-                     .|+.+.+.+|.|.|.|.-|-.+|+.| ..
T Consensus       160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~  214 (763)
T PRK12862        160 MKIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VS  214 (763)
T ss_pred             CCCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence            4689999744   34577778888877762                     34678999999999999999999998 56


Q ss_pred             CCc---EEEEEcCchh------hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162          188 FKM---NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (394)
Q Consensus       188 ~G~---~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~  258 (394)
                      .|.   +++.+|+..-      ..+..+...|.   +.        ....+|+|+++.+|+++=+-     +.++|.++.
T Consensus       215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~--------~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~  278 (763)
T PRK12862        215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QK--------TDARTLAEVIEGADVFLGLS-----AAGVLKPEM  278 (763)
T ss_pred             cCCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hh--------cccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence            788   7999995421      00112222232   11        01258999999999987542     147899999


Q ss_pred             HhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHH
Q 016162          259 LATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK-----WTREGM  332 (394)
Q Consensus       259 l~~mk~gailIN~aRG~~v-de~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~-----~~~~~~  332 (394)
                      ++.|.+..++.=.|....- ..+..+++ ..|.+.+-+-   ...|      -+..|+++-|-|+-...     .--+.|
T Consensus       279 v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~p------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m  348 (763)
T PRK12862        279 VKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGR---SDYP------NQVNNVLCFPYIFRGALDVGATTINEEM  348 (763)
T ss_pred             HHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECC---cCCC------CcccceeeccchhhhHHhcCCeeCCHHH
Confidence            9999999999999987652 22333322 2233433331   1112      23568999998764221     112445


Q ss_pred             HHHHHHHHHHHH
Q 016162          333 ATLAALNVLGKI  344 (394)
Q Consensus       333 ~~~~~~ni~~~l  344 (394)
                      ...+++.+-.+.
T Consensus       349 ~~aaa~ala~~~  360 (763)
T PRK12862        349 KIAAVRAIAELA  360 (763)
T ss_pred             HHHHHHHHHhcc
Confidence            555555555544

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.67  E-value=0.23  Score=54.55  Aligned_cols=166  Identities=20%  Similarity=0.272  Sum_probs=110.3

Q ss_pred             hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (394)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (394)
                      +.+|+|.|+--   .-+|=-+++-+++.+|-                     .|+.+.+.++.|.|.|.-|-.+|+.| .
T Consensus       151 ~~~ip~f~DD~---~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~  205 (752)
T PRK07232        151 RMDIPVFHDDQ---HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-V  205 (752)
T ss_pred             hcCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-H
Confidence            34689988743   34577778888877762                     34678999999999999999999998 5


Q ss_pred             cCCc---EEEEEcCchhh---H---HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH
Q 016162          187 GFKM---NLIYYDLYQAT---R---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (394)
Q Consensus       187 ~~G~---~V~~~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~  257 (394)
                      ..|.   +++.+|+..--   +   ...+...|.   +.        ....+|+|+++.+|+++=.-     +.++|.++
T Consensus       206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a---~~--------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~  269 (752)
T PRK07232        206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA---VD--------TDARTLAEAIEGADVFLGLS-----AAGVLTPE  269 (752)
T ss_pred             HcCCCcccEEEEcCCCeecCCCcccccHHHHHHh---cc--------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHH
Confidence            6788   78998865310   0   112222231   11        12358999999999887542     14789999


Q ss_pred             HHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCC
Q 016162          258 RLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (394)
Q Consensus       258 ~l~~mk~gailIN~aRG~~v-de~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~  323 (394)
                      .+..|.+..++.=.|....- ..+..+++ ..|.+.+-+   -...|      -+..|+++-|-++-
T Consensus       270 ~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atG---rs~~p------nQ~NN~~~FPgi~~  326 (752)
T PRK07232        270 MVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATG---RSDYP------NQVNNVLCFPYIFR  326 (752)
T ss_pred             HHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEEC---CcCCC------CcccceeecchhhH
Confidence            99999999999999987752 22322222 223343333   11122      24568999997764

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.64  E-value=0.035  Score=57.73  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=60.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      -+|+|++|.|||-|.++..=++.| ..+|++|+++.|...+......        ..+.  +.+..-.--++-+..+++|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~--------~~~~--i~~~~~~~~~~dl~~~~lv   76 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWA--------DAGM--LTLVEGPFDESLLDTCWLA   76 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHH--------hCCC--EEEEeCCCChHHhCCCEEE
Confidence            579999999999999999877777 5899999999987655443221        1121  1121111123457889999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      +.++....     +|......++...+++|+
T Consensus        77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~  102 (457)
T PRK10637         77 IAATDDDA-----VNQRVSEAAEARRIFCNV  102 (457)
T ss_pred             EECCCCHH-----HhHHHHHHHHHcCcEEEE
Confidence            99886433     344444444444445554

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.63  E-value=0.039  Score=51.82  Aligned_cols=96  Identities=11%  Similarity=0.100  Sum_probs=61.3

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhccc
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREA  237 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~a  237 (394)
                      .--+++|++|.|||-|.++..=++.| ..+|++|+++.|...+.......        .+.  +.+.. ..+. +-+..+
T Consensus        19 i~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~~-~dl~g~   86 (223)
T PRK05562         19 ISLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYDK-EFIKDK   86 (223)
T ss_pred             eEEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCCh-HHhCCC
Confidence            33567899999999999999877776 58999999999987665433211        111  11111 1133 336789


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      ++|+.++. +++    +|+.....++.-.+++|+
T Consensus        87 ~LViaATd-D~~----vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         87 HLIVIATD-DEK----LNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             cEEEECCC-CHH----HHHHHHHHHHHcCCeEEE
Confidence            99999976 333    455555555554455554

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.62  E-value=0.14  Score=52.58  Aligned_cols=75  Identities=15%  Similarity=0.253  Sum_probs=50.6

Q ss_pred             ccCCCeEEEEecC---hHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|+||+++|=+   ++..+.+..+ ..+ ||+|.+..|..-...+.+.+.    +...|   ..+....++++.++.|
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~eav~~A  309 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRNG---HVIEQTDDLAAGLRGA  309 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhcC---CeEEEEcCHHHHhCCC
Confidence            4889999999984   8899988876 455 999999887543212222111    11112   2233457999999999


Q ss_pred             CEEEEcC
Q 016162          238 DVISLHP  244 (394)
Q Consensus       238 DiV~l~l  244 (394)
                      |+|....
T Consensus       310 DVVYt~~  316 (429)
T PRK11891        310 DVVYATR  316 (429)
T ss_pred             CEEEEcC
Confidence            9998743

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.61  E-value=0.042  Score=54.05  Aligned_cols=73  Identities=22%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++|+|||.|.+|..+|..+ ...|  .+|..+|++.........+     +.+...  ..... ...+. +.++.||+|+
T Consensus         1 mkI~IIGaG~VG~~~a~~l-~~~g~~~ev~l~D~~~~~~~g~a~d-----l~~~~~~~~~~~i-~~~d~-~~l~~aDiVi   72 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYAL-LLRGLASEIVLVDINKAKAEGEAMD-----LAHGTPFVKPVRI-YAGDY-ADCKGADVVV   72 (308)
T ss_pred             CEEEEECCCHHHHHHHHHH-HHcCCCCEEEEEECCchhhhhHHHH-----HHccccccCCeEE-eeCCH-HHhCCCCEEE
Confidence            3799999999999999987 4556  5899999976532211111     111100  00111 12355 4589999999


Q ss_pred             EcCCC
Q 016162          242 LHPVL  246 (394)
Q Consensus       242 l~lPl  246 (394)
                      ++.+.
T Consensus        73 ita~~   77 (308)
T cd05292          73 ITAGA   77 (308)
T ss_pred             EccCC
Confidence            99885

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.60  E-value=0.076  Score=52.11  Aligned_cols=126  Identities=13%  Similarity=0.080  Sum_probs=72.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|+|+|.|.||+-+|-+| ...|.+|..++|..+. .+...++=+-.+...+.. ..+.....-.+.....|+|++|+-
T Consensus         3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDRQR-LAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEechHH-HHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence            4799999999999999998 5679999999996532 222111000001111110 000000111123467899999985


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD  297 (394)
                      .. ++...+ +.....+.+++.++-+-. ++-.++.+.+.+-+.++.++..-
T Consensus        80 ~~-~~~~al-~~l~~~l~~~t~vv~lQN-Gv~~~e~l~~~~~~~~v~~g~~~  128 (305)
T PRK05708         80 AY-DAEPAV-ASLAHRLAPGAELLLLQN-GLGSQDAVAARVPHARCIFASST  128 (305)
T ss_pred             HH-hHHHHH-HHHHhhCCCCCEEEEEeC-CCCCHHHHHHhCCCCcEEEEEee
Confidence            32 333333 344556778888777655 44566777777766666555443

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.54  E-value=0.32  Score=47.86  Aligned_cols=77  Identities=19%  Similarity=0.167  Sum_probs=49.3

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      +.|.||+++|= +++-++.+..+ ..||++|....|......+...+..-......|   ..+....++++.+++||+|.
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy  221 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY  221 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence            78999999997 67888888876 689999999887543211111110000001111   12334579999999999997


Q ss_pred             Ec
Q 016162          242 LH  243 (394)
Q Consensus       242 l~  243 (394)
                      .-
T Consensus       222 ~~  223 (304)
T TIGR00658       222 TD  223 (304)
T ss_pred             Ec
Confidence            63

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.50  E-value=0.096  Score=54.70  Aligned_cols=115  Identities=16%  Similarity=0.121  Sum_probs=71.2

Q ss_pred             ccCCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhh----hhhhcC------CCC
Q 016162          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP  221 (394)
Q Consensus       162 ~l~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~  221 (394)
                      .+.|++|+|+|+          ..-...+++.| ...|.+|.+|||........  ..|+.    +-....      ...
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence            589999999998          56788899998 68999999999985431110  01100    000000      000


Q ss_pred             ccccccCCHHHHhcccCEEEEcCCCChhhhhcccHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       222 ~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~-~l~~mk~gailIN~aRG~~vde~aL~  283 (394)
                      .......++++.++.||+|+++++ .++-+. ++-+ ....|++..+++|. | .++|.+.+-
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t~-~~ef~~-l~~~~~~~~m~~~~~viD~-r-n~l~~~~~~  456 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILTE-WDEFKT-LDYQKIYDNMQKPAFVFDG-R-NVLDHEKLR  456 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECCC-ChHhcc-cCHHHHHHhccCCCEEEEC-C-CCCCHHHHH
Confidence            011223567789999999999987 334343 3433 35667766689995 4 355765553

>PRK12861 malic enzyme; Reviewed

Probab=95.48  E-value=0.29  Score=53.83  Aligned_cols=186  Identities=18%  Similarity=0.167  Sum_probs=117.3

Q ss_pred             CceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcC
Q 016162          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (394)
Q Consensus       109 gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~  188 (394)
                      .|++.|+--   .-+|=-+++-+++.+|-                     .|+.+.+.+|.|.|.|.-|-.+|+.+ ...
T Consensus       157 ~ipvf~DD~---qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~  211 (764)
T PRK12861        157 KIPVFHDDQ---HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL  211 (764)
T ss_pred             CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence            688988743   34566778888877762                     34678999999999999999999998 677


Q ss_pred             Cc---EEEEEcCchh-----hH-HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHH
Q 016162          189 KM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (394)
Q Consensus       189 G~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l  259 (394)
                      |.   +++.+|+..-     .. ...+...|..   .        ....+|.|+++.+|+++=+-     +.++|.++.+
T Consensus       212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~---~--------~~~~~L~eai~~advliG~S-----~~g~ft~e~v  275 (764)
T PRK12861        212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQ---E--------TDARTLAEVIGGADVFLGLS-----AGGVLKAEML  275 (764)
T ss_pred             CCChhhEEEEcCCCeeeCCCcccCCHHHHHHHh---h--------cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHH
Confidence            88   7899984321     00 1122223321   1        11258999999999886542     2578999999


Q ss_pred             hcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHHH
Q 016162          260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK-----WTREGMA  333 (394)
Q Consensus       260 ~~mk~gailIN~aRG~~v-de~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~-----~~~~~~~  333 (394)
                      +.|.+..++.=.|....- ..+..+ + ..|+...|.  --...|      -+..|+++-|-|+-...     .--+.|.
T Consensus       276 ~~Ma~~PIIFaLsNPtpE~~pe~a~-~-~~g~aivaT--Grs~~p------nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~  345 (764)
T PRK12861        276 KAMAARPLILALANPTPEIFPELAH-A-TRDDVVIAT--GRSDYP------NQVNNVLCFPYIFRGALDVGATTITREME  345 (764)
T ss_pred             HHhccCCEEEECCCCCccCCHHHHH-h-cCCCEEEEe--CCcCCC------CccceeeecchhhHHHHHcCCccCCHHHH
Confidence            999999999999986641 222222 2 224422221  111112      24579999998764221     1224455


Q ss_pred             HHHHHHHHHHHc
Q 016162          334 TLAALNVLGKIK  345 (394)
Q Consensus       334 ~~~~~ni~~~l~  345 (394)
                      ..+++.|-.+..
T Consensus       346 ~aAa~alA~~~~  357 (764)
T PRK12861        346 IAAVHAIAGLAE  357 (764)
T ss_pred             HHHHHHHHhhCC
Confidence            555555555443

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.41  E-value=0.21  Score=50.75  Aligned_cols=190  Identities=19%  Similarity=0.142  Sum_probs=117.1

Q ss_pred             hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (394)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (394)
                      +..|+|.|+--.   -+|=.+++-+++.+|                     ..|+.|+..+|.+.|.|.-|-.+++.+ .
T Consensus       165 ~~~IPvFhDDqq---GTaiv~lA~llnalk---------------------~~gk~l~d~kiv~~GAGAAgiaia~~l-~  219 (432)
T COG0281         165 RMNIPVFHDDQQ---GTAIVTLAALLNALK---------------------LTGKKLKDQKIVINGAGAAGIAIADLL-V  219 (432)
T ss_pred             cCCCCccccccc---HHHHHHHHHHHHHHH---------------------HhCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence            356777776543   457777888887776                     245789999999999999999999998 7


Q ss_pred             cCCc---EEEEEcCchhh---H----HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162          187 GFKM---NLIYYDLYQAT---R----LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (394)
Q Consensus       187 ~~G~---~V~~~d~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~  256 (394)
                      +.|+   +|+.+|+..--   +    ..++...|.   .+  .    ...... ++.+..+|+++-+--     .+.|.+
T Consensus       220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a---~~--~----~~~~~~-~~~~~~adv~iG~S~-----~G~~t~  284 (432)
T COG0281         220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKA---IE--D----TGERTL-DLALAGADVLIGVSG-----VGAFTE  284 (432)
T ss_pred             HhCCCcccEEEEecCCcccCCCcccccchHHHHHH---Hh--h----hccccc-cccccCCCEEEEcCC-----CCCcCH
Confidence            8888   69999876321   1    011111110   00  0    001111 457889999987632     389999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHH-HHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHH-----HH
Q 016162          257 ERLATMKKEAILVNCSRGPVIDEVALVEH-LKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT-----RE  330 (394)
Q Consensus       257 ~~l~~mk~gailIN~aRG~~vde~aL~~a-L~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~-----~~  330 (394)
                      +.++.|.+..++.=.|....   +..-+. .+-+.  ++++=.+. -|.  .|- +-.|+++-|.|+-.-..+     -+
T Consensus       285 e~V~~Ma~~PiIfalaNP~p---Ei~Pe~a~~~~~--~aaivaTG-rsd--~Pn-QvNNvL~FPgIfrGaLd~rA~~Itd  355 (432)
T COG0281         285 EMVKEMAKHPIIFALANPTP---EITPEDAKEWGD--GAAIVATG-RSD--YPN-QVNNVLIFPGIFRGALDVRAKTITD  355 (432)
T ss_pred             HHHHHhccCCEEeecCCCCc---cCCHHHHhhcCC--CCEEEEeC-CCC--Ccc-cccceeEcchhhhhhHhhccccCCH
Confidence            99999999999998887653   222222 22221  22222221 221  121 668999999987533222     24


Q ss_pred             HHHHHHHHHHHHHHc
Q 016162          331 GMATLAALNVLGKIK  345 (394)
Q Consensus       331 ~~~~~~~~ni~~~l~  345 (394)
                      .|...+++.|-++.+
T Consensus       356 eM~~AAa~AiA~~~~  370 (432)
T COG0281         356 EMKIAAAEAIADLAR  370 (432)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            555556666666544

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.40  E-value=0.098  Score=51.36  Aligned_cols=92  Identities=12%  Similarity=0.130  Sum_probs=54.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----ccC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  238 (394)
                      ..++||||.|+||+..+..+.+.-++++. ++|+++.....++.+.       .|.   . ..+.++++++.     +.|
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~-------~Gi---~-~~~~~ie~LL~~~~~~dID   72 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR-------LGV---A-TSAEGIDGLLAMPEFDDID   72 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH-------cCC---C-cccCCHHHHHhCcCCCCCC
Confidence            35899999999999977666444466655 5677654322121111       121   1 12357888885     588


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|+.++|....-     +-.....+.|..+|+-+
T Consensus        73 iVf~AT~a~~H~-----e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         73 IVFDATSAGAHV-----RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             EEEECCCHHHHH-----HHHHHHHHcCCeEEECC
Confidence            899999832221     11122245677777765

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.40  E-value=0.045  Score=52.44  Aligned_cols=105  Identities=23%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             cccccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .|.+++..|++|+|+ |.||..+||.| .+-++.....-|....+-.+... |   +.+  .  .+.....|++..+.+.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~l-a~~~~~~~ll~r~aea~~rq~l~-~---l~e--~--~~~~~i~s~d~~~~~e  231 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWL-APKVGVKELLLRDAEARNRQRLT-L---LQE--E--LGRGKIMSLDYALPQE  231 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHh-ccccCEEEEecccHHhhhhhhhh-h---ccc--c--cCCCeeeecccccccc
Confidence            568999999999997 99999999998 47666655554443332111111 1   111  1  1112234666555555


Q ss_pred             CEEE-E-cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016162          238 DVIS-L-HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       238 DiV~-l-~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde  279 (394)
                      |+++ + .+|    +-..|+...   +|||++++|-++..=+|+
T Consensus       232 ~i~v~vAs~~----~g~~I~pq~---lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         232 DILVWVASMP----KGVEIFPQH---LKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             ceEEEEeecC----CCceechhh---ccCCeEEEcCCcCccccc
Confidence            6554 3 333    233455544   589999999988775554

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.39  E-value=0.033  Score=48.29  Aligned_cols=86  Identities=23%  Similarity=0.300  Sum_probs=49.6

Q ss_pred             EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCC
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt  247 (394)
                      +-|+|.|.+|+++++.+ +.+|++|+++|++++.                                ++.++-+. +.+. 
T Consensus         1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~-   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP-   45 (136)
T ss_dssp             EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred             CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence            46899999999999985 8999999999987421                                12333322 2220 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016162          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (394)
Q Consensus       248 ~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaal  296 (394)
                      .+..     +.+ .+.+++++| ++++.-.|.+.|..+|++ ...+.|+
T Consensus        46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence            1111     111 355666666 788888888888888876 3555543

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.39  E-value=0.17  Score=50.52  Aligned_cols=78  Identities=15%  Similarity=0.140  Sum_probs=50.7

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+.|.+|+++|-+  ++..+.+..+ ..||+++.+..|..-....++.+..-...+..|   ..+....++++.++++|+
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDv  228 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADF  228 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4889999999976  6889988886 689999999987543211111110000011112   123345789999999999


Q ss_pred             EEEc
Q 016162          240 ISLH  243 (394)
Q Consensus       240 V~l~  243 (394)
                      |..-
T Consensus       229 vytd  232 (336)
T PRK03515        229 IYTD  232 (336)
T ss_pred             EEec
Confidence            9764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.38  E-value=0.064  Score=50.38  Aligned_cols=107  Identities=24%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH------------HHHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE------------KFVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~------------~~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. +++.+|+..-..  +-            ...+.....+.+.+. ..+..
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~   95 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA   95 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999984 6677 788887543210  00            000000011111111 11111


Q ss_pred             c--c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       225 ~--~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .  .  ..++++++.++|+|+.|+. +++++.++++....   .+.-+|.++
T Consensus        96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence            0  1  1235678899999999986 67778777765543   345566664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.35  E-value=0.054  Score=53.20  Aligned_cols=102  Identities=19%  Similarity=0.286  Sum_probs=59.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.+|+.+|..| ...|  -++..+|++....... ...+.+.....+ ..... ...+.+ .+..||+|+++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l-~~~g~~~ei~l~D~~~~~~~~~-a~dL~~~~~~~~-~~~~i-~~~~~~-~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSL-VNQGIADELVLIDINEEKAEGE-ALDLEDALAFLP-SPVKI-KAGDYS-DCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchhhHh-HhhHHHHhhccC-CCeEE-EcCCHH-HhCCCCEEEEc
Confidence            4899999999999999987 4566  4899999977543221 111111000001 01111 123444 47899999998


Q ss_pred             CCCChh---hh--------hccc--HHHHhcCCCCcEEEEcC
Q 016162          244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCS  272 (394)
Q Consensus       244 lPlt~~---t~--------~li~--~~~l~~mk~gailIN~a  272 (394)
                      ......   ++        .++.  .+.+....|.+++|+++
T Consensus        76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            764211   11        1111  12344456788999987

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.33  E-value=0.16  Score=50.75  Aligned_cols=74  Identities=14%  Similarity=0.179  Sum_probs=48.8

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH---HHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|++|+++|= .++..+.+..+ ..+|++|....|..-.-....   .+++.   ...|   ..+....++++.++.+
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~~g---~~~~~~~d~~eav~~a  223 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENC---EVSG---GSVLVTDDVDEAVKDA  223 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHH---HhcC---CeEEEEcCHHHHhCCC
Confidence            588999999997 57777777775 689999999987632111111   11110   0111   1233457999999999


Q ss_pred             CEEEE
Q 016162          238 DVISL  242 (394)
Q Consensus       238 DiV~l  242 (394)
                      |+|..
T Consensus       224 Dvvy~  228 (338)
T PRK02255        224 DFVYT  228 (338)
T ss_pred             CEEEE
Confidence            99987

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.32  E-value=0.17  Score=49.60  Aligned_cols=107  Identities=19%  Similarity=0.168  Sum_probs=68.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .|++++|||--.=-..++++| ...|++|+.+.-....        |       ..  .+.....+.+++++++|+|++-
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~--------~-------~~--~g~~~~~~~~~~~~~ad~ii~~   62 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD--------H-------GF--TGATKSSSLEEALSDVDVIILP   62 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc--------c-------cc--CCceeeccHHHHhccCCEEEEC
Confidence            378999999888888899998 6889998875422111        1       01  1122334678889999999999


Q ss_pred             CCCChhhh---h-------cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016162          244 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (394)
Q Consensus       244 lPlt~~t~---~-------li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~g  293 (394)
                      +|.+.+..   .       -++++.+++|++|..++ ++.+..   . +-+.+++.++..
T Consensus        63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~~  117 (296)
T PRK08306         63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRKL  117 (296)
T ss_pred             CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCeE
Confidence            88654321   1       13578899999998444 343322   2 334455555544

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.29  E-value=0.081  Score=56.71  Aligned_cols=62  Identities=23%  Similarity=0.350  Sum_probs=44.2

Q ss_pred             CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc-ccccccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEc
Q 016162          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD  196 (394)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~-~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d  196 (394)
                      .....||.++-|=|-++|                |.-.. .....|++.+|.|+|.|.+|..+|+.| .+.|. +++.+|
T Consensus       307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD  369 (664)
T TIGR01381       307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD  369 (664)
T ss_pred             CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence            345567777666665554                43211 122568999999999999999999998 57787 677777


Q ss_pred             C
Q 016162          197 L  197 (394)
Q Consensus       197 ~  197 (394)
                      .
T Consensus       370 ~  370 (664)
T TIGR01381       370 N  370 (664)
T ss_pred             C
Confidence            4

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.28  E-value=0.14  Score=50.40  Aligned_cols=73  Identities=23%  Similarity=0.369  Sum_probs=51.2

Q ss_pred             ccCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+.|+||+++|-|   ++.++.+..+ ..||++|.+..|......+++.+    .++..|   ..+....++++.++.||
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~----~~~~~G---~~v~~~~d~~~a~~~aD  218 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILE----ELKAKG---IKVRETESLEEVIDEAD  218 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHH----HHHHcC---CEEEEECCHHHHhCCCC
Confidence            4789999999995   9999999986 68999999998764321122111    111212   22334579999999999


Q ss_pred             EEEE
Q 016162          239 VISL  242 (394)
Q Consensus       239 iV~l  242 (394)
                      +|..
T Consensus       219 vvyt  222 (301)
T TIGR00670       219 VLYV  222 (301)
T ss_pred             EEEE
Confidence            9976

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.27  E-value=0.13  Score=53.89  Aligned_cols=114  Identities=19%  Similarity=0.187  Sum_probs=70.5

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +.|+++.|+|+|.+|.+.++.| +..|++|+++|..... .+.        ++..|.   .........+.+..+|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~--------l~~~g~---~~~~~~~~~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP--------HAERGV---ATVSTSDAVQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH--------HHhCCC---EEEcCcchHhHhhcCCEEEE
Confidence            4789999999999999999986 7999999999976432 221        111121   11111223455778999887


Q ss_pred             cCCCChhhh----------hcccHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          243 HPVLDKTTY----------HLINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       243 ~lPlt~~t~----------~li~~~~l~-~m--------k~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ...-.+...          .++++-.|. ..        +...+-|--+.|+.--..-|...|+..
T Consensus        77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            743222211          123332221 11        113455777789998888888888763

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=95.26  E-value=0.32  Score=48.50  Aligned_cols=106  Identities=11%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+.|.+|+++|-+  ++..+.+..+ ..+|++|.+..|..-...+.+.+..-+.....|   ..+....++++.++.+|+
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv  228 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF  228 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999976  7888888876 689999998887542111111111000011112   123335789999999999


Q ss_pred             EEEcC----CC-Ch---h-----hhhcccHHHHhcC-CCCcEEEEc
Q 016162          240 ISLHP----VL-DK---T-----TYHLINKERLATM-KKEAILVNC  271 (394)
Q Consensus       240 V~l~l----Pl-t~---~-----t~~li~~~~l~~m-k~gailIN~  271 (394)
                      |..-.    .. .+   +     -..-++.+.++.. |+++++.-|
T Consensus       229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc  274 (334)
T PRK12562        229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC  274 (334)
T ss_pred             EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence            97643    10 00   0     0123566666664 566666665

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.23  E-value=0.071  Score=53.39  Aligned_cols=97  Identities=16%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .+|+|+|. |.+|+++++.| ... +.++. .+++..... ....+.|. ++.  +.....+. ..+.++++.++|+|++
T Consensus         1 ~kVaIiGATG~vG~ellr~L-~~hP~~el~~l~~s~~sag-k~~~~~~~-~l~--~~~~~~~~-~~~~~~~~~~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLL-LNHPEVEITYLVSSRESAG-KPVSEVHP-HLR--GLVDLNLE-PIDEEEIAEDADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHH-HcCCCceEEEEeccchhcC-CChHHhCc-ccc--ccCCceee-cCCHHHhhcCCCEEEE
Confidence            47999998 99999999998 565 67777 446543210 00001110 000  10011111 1255676678999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|.. ....+. ...   .+.|..+||.|-
T Consensus        75 alP~~-~s~~~~-~~~---~~~G~~VIDlS~  100 (346)
T TIGR01850        75 ALPHG-VSAELA-PEL---LAAGVKVIDLSA  100 (346)
T ss_pred             CCCch-HHHHHH-HHH---HhCCCEEEeCCh
Confidence            99943 222222 111   256899999984

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.20  E-value=0.19  Score=48.90  Aligned_cols=102  Identities=18%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+..|+++.|+|.|-.+++++..| ...|+ +|++++|+.++. ++..+.+.    +.+. ........+++. +.++|+
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~ra-~~La~~~~----~~~~-~~~~~~~~~~~~-~~~~dl  193 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRERA-EELADLFG----ELGA-AVEAAALADLEG-LEEADL  193 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhh----hccc-cccccccccccc-ccccCE
Confidence            356799999999999999999997 67885 799999988652 22222221    1111 000111122222 226999


Q ss_pred             EEEcCCCChhhhh---cccHHHHhcCCCCcEEEEcCC
Q 016162          240 ISLHPVLDKTTYH---LINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       240 V~l~lPlt~~t~~---li~~~~l~~mk~gailIN~aR  273 (394)
                      |+.++|..-....   +++   ...++++.++.|+--
T Consensus       194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY  227 (283)
T COG0169         194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVY  227 (283)
T ss_pred             EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEecc
Confidence            9999995432210   122   334455555555543

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.15  E-value=0.086  Score=51.70  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=57.7

Q ss_pred             EEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCC--CccccccCCHHHHhcccCEEEEc
Q 016162          168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      |+|||.|.+|..+|-.++ ..|  .++..+|+..........+     +.+....  ........+ .+.++.||+|+++
T Consensus         1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-----L~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit   73 (300)
T cd00300           1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-----LSHASAFLATGTIVRGGD-YADAADADIVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-----HHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence            589999999999998873 445  5899999976543222111     1111110  111111234 4579999999998


Q ss_pred             CCCC--hh-hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016162          244 PVLD--KT-TY--------HLIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt--~~-t~--------~li~--~~~l~~mk~gailIN~aR  273 (394)
                      ....  +. ++        .++.  .+.+....|.+++|+++.
T Consensus        74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            7531  11 11        1111  123344458899999873

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.13  E-value=0.1  Score=48.57  Aligned_cols=98  Identities=22%  Similarity=0.272  Sum_probs=57.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH-----------HHHHhhhhhhhhcCCCCcccc-
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-----------KFVTAYGQFLKANGEQPVTWK-  225 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~-  225 (394)
                      ..|+.++|.|||.|.+|..+|+.|+ ..|. ++..+|...-..  +.           ...+.....+++.+. ..... 
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp-~v~v~~  101 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINP-FVEIEA  101 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCC-CCEEEE
Confidence            4689999999999999999999985 5566 588888762100  00           000000011111111 01110 


Q ss_pred             ---c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          226 ---R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       226 ---~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                         .  ..+++++++.+|+|+.|+- +.+++..++......
T Consensus       102 ~~~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~~  141 (212)
T PRK08644        102 HNEKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLEH  141 (212)
T ss_pred             EeeecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHh
Confidence               0  1234577889999998864 566777776544443

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.12  E-value=0.13  Score=51.46  Aligned_cols=118  Identities=20%  Similarity=0.245  Sum_probs=64.8

Q ss_pred             eEEEEecChHHHHHHHHHHh---------cCCcEEE-EEcCchh---------hHHHHHHHhhhhhhhhcCCCCc--ccc
Q 016162          167 TVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQA---------TRLEKFVTAYGQFLKANGEQPV--TWK  225 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~---------~~G~~V~-~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~  225 (394)
                      +|||+|+|.||+.+++.+.+         +.+.+|. +.|+...         .....+..       ..+....  ...
T Consensus         4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~-------~~~~~~~~~~~~   76 (341)
T PRK06270          4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKE-------ETGKLADYPEGG   76 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHh-------ccCCcccCcccc
Confidence            79999999999999998732         2256765 4454211         11111111       1111000  001


Q ss_pred             ccCCHHHHh--cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162          226 RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (394)
Q Consensus       226 ~~~~l~ell--~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l  291 (394)
                      ...++++++  ...|+|+.|+|....+...--+-....++.|.-+|-..-+.+ ..-++|.++.++..+
T Consensus        77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            124788888  468999999996544322111222455667777766543332 245677777766544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.11  E-value=0.13  Score=52.97  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH----Hhccc
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~a  237 (394)
                      .+..+++.|+|+|.+|+.+++.| ...|.+|+++|.++... +...+.+      .+. ........+.+.    -+.++
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~~-~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PNT-LVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CCC-eEEECCCCCHHHHHhcCCccC
Confidence            34568899999999999999998 78899999999887542 2111110      011 010111123322    25789


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      |.|+++++.+..  +++-......+.+..+++-+
T Consensus       299 ~~vi~~~~~~~~--n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        299 DAFIALTNDDEA--NILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             CEEEECCCCcHH--HHHHHHHHHHhCCCeEEEEE
Confidence            999998885433  23323333445555455443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.11  E-value=0.11  Score=53.27  Aligned_cols=74  Identities=16%  Similarity=0.202  Sum_probs=48.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc-c-ccccCCHHHH-hcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~l  242 (394)
                      +++.|+|+|.+|+.+|+.| ...|.+|+++|+++....+ ..+       ..+.... + ......++++ +.++|.|++
T Consensus         1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~~~-~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~   71 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERLRR-LQD-------RLDVRTVVGNGSSPDVLREAGAEDADLLIA   71 (453)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHHHH-HHh-------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence            4799999999999999998 6889999999998764221 111       0110000 0 0111235555 788999999


Q ss_pred             cCCCCh
Q 016162          243 HPVLDK  248 (394)
Q Consensus       243 ~lPlt~  248 (394)
                      +++...
T Consensus        72 ~~~~~~   77 (453)
T PRK09496         72 VTDSDE   77 (453)
T ss_pred             ecCChH
Confidence            998543

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.11  E-value=0.11  Score=53.78  Aligned_cols=131  Identities=21%  Similarity=0.234  Sum_probs=79.9

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhH-HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ..+++|.|+|+|.-|.++|+.| ...|++|+++|..+... .+...      +...+.   ....-.-..+.+..+|+|+
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~------~~~~~i---~~~~g~~~~~~~~~~d~vV   74 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP------LLLEGI---EVELGSHDDEDLAEFDLVV   74 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh------hhccCc---eeecCccchhccccCCEEE
Confidence            4499999999999999999998 78999999999665441 11100      000111   0111011126688899999


Q ss_pred             Ec--CCCChh-h-------hhcccH-HHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHc--------CCcceEEeeccC
Q 016162          242 LH--PVLDKT-T-------YHLINK-ERLATM--KKEAILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFE  300 (394)
Q Consensus       242 l~--lPlt~~-t-------~~li~~-~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~--------g~l~gaalDV~~  300 (394)
                      ..  +|.+.. .       ..++++ +.|-+.  +...+-|.-+.|+.--+.-+...|++        |.|...++|+..
T Consensus        75 ~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~  154 (448)
T COG0771          75 KSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLE  154 (448)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhc
Confidence            87  332222 0       112332 233332  22355577778998888777777765        446777888887


Q ss_pred             CCC
Q 016162          301 DEP  303 (394)
Q Consensus       301 ~EP  303 (394)
                      +++
T Consensus       155 ~~~  157 (448)
T COG0771         155 QAE  157 (448)
T ss_pred             ccC
Confidence            643

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.08  E-value=0.23  Score=49.73  Aligned_cols=113  Identities=12%  Similarity=0.050  Sum_probs=66.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|||||. .+|+.-++.++..- +.++. ++|+..+. .+++.+.|       |.     ..+.++++++.+.|+++++
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------gi-----~~y~~~eell~d~Di~~V~   69 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------GV-----PLYCEVEELPDDIDIACVV   69 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------CC-----CccCCHHHHhcCCCEEEEE
Confidence            58999999 68998888773322 46665 57877654 33333333       21     1357999999999999999


Q ss_pred             CCCC-hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          244 PVLD-KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       244 lPlt-~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      +|.+ |...|.  +-..+.++.|.-++.=-=-..-+.++|+++.++..+...
T Consensus        70 ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        70 VRSAIVGGQGS--ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             eCCCCCCccHH--HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            9842 222221  222333444433322111113566778887777655544

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.05  E-value=0.42  Score=47.66  Aligned_cols=78  Identities=19%  Similarity=0.219  Sum_probs=50.5

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+.|+||+++|-+  ++.++.+..+ ..||++|....|......+.+.+..-...+..|   ..+....++++.++.||+
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv  227 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADV  227 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            3789999999997  7888888876 689999999887543221221111000011112   123335789999999999


Q ss_pred             EEEc
Q 016162          240 ISLH  243 (394)
Q Consensus       240 V~l~  243 (394)
                      |..-
T Consensus       228 vyt~  231 (331)
T PRK02102        228 IYTD  231 (331)
T ss_pred             EEEc
Confidence            9764

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.02  E-value=0.19  Score=48.91  Aligned_cols=80  Identities=23%  Similarity=0.256  Sum_probs=49.8

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++.|+++.|+|.|-.|++++-.| ...|+ +|+++||+.++. ++..+.+.   ...+..........++++.+..+|+|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~ka-~~La~~~~---~~~~~~~~~~~~~~~~~~~~~~~div  198 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVIN---NAVGREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHh---hccCcceEEecCHhHHHHHHhhcCEE
Confidence            45689999999999999999887 46787 799999987543 22222110   00010000000111234456789999


Q ss_pred             EEcCCC
Q 016162          241 SLHPVL  246 (394)
Q Consensus       241 ~l~lPl  246 (394)
                      +.++|.
T Consensus       199 INaTp~  204 (283)
T PRK14027        199 VNATPM  204 (283)
T ss_pred             EEcCCC
Confidence            999983

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.01  E-value=0.18  Score=49.82  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=58.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc---ccCE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDi  239 (394)
                      .|++|.|+|.|.+|...++.+ +..|+ +|++.+++..+. + .       +++.|..........++.++..   ..|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~-~-~-------a~~lGa~~vi~~~~~~~~~~~~~~g~~D~  238 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSL-S-L-------AREMGADKLVNPQNDDLDHYKAEKGYFDV  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHH-H-H-------HHHcCCcEEecCCcccHHHHhccCCCCCE
Confidence            588999999999999999884 89999 688888876542 2 1       1122321111111123444332   2688


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+-+... +.+   + ...++.++++..++.++.
T Consensus       239 vid~~G~-~~~---~-~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        239 SFEVSGH-PSS---I-NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             EEECCCC-HHH---H-HHHHHHhhcCCEEEEEcc
Confidence            8777652 221   1 345667788888888764

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.01  E-value=0.12  Score=52.45  Aligned_cols=115  Identities=19%  Similarity=0.259  Sum_probs=72.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh----------HHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .+|+|+||.|=|+|++|+..|+.+ ...|++|+++|.+...          .+....+..+......+     .. ..+-
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~g-----a~-~i~~  275 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG-----AE-YITN  275 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcC-----ce-Eccc
Confidence            359999999999999999999997 6779999999876540          00000000000000001     11 1223


Q ss_pred             HHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       231 ~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ++++ ..||+.+=|     .+.+.|+.+...+++-. +++-.+.|++- .+|--..++.|
T Consensus       276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG  328 (411)
T COG0334         276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG  328 (411)
T ss_pred             cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC
Confidence            4554 468988755     45778988888888766 88888888875 34433344545

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.00  E-value=0.081  Score=52.56  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=53.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcC----CcEEEEEcCchhhHHHHHHHhhhhhh-------hhcC------CCCccccccCC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFL-------KANG------EQPVTWKRASS  229 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~  229 (394)
                      +|||.|+|+||+.+.|.+ ...    +.+|...+.....+...+.-.|++.-       +..+      ...+.+....+
T Consensus         1 ~IaInGfGrIGR~vlr~l-~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRAL-YESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHH-HhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            589999999999999986 443    36777665433333333444443210       0000      01111222224


Q ss_pred             HHHH-h--cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          230 MDEV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       230 l~el-l--~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ++++ +  ...|+|+.|.+.... .    +.....++.|+..|.++
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~s-~----e~a~~~l~aGa~~V~~S  120 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYGN-R----EQGERHIRAGAKRVLFS  120 (325)
T ss_pred             hhhccccccCCCEEEEccchhcc-H----HHHHHHHHcCCeEEEec
Confidence            5543 2  478999998873221 1    22233456677777666

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.94  E-value=0.074  Score=53.15  Aligned_cols=98  Identities=21%  Similarity=0.221  Sum_probs=59.6

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh-------------HHH---HHHHhhhhhhhhcCC-CCc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-------------RLE---KFVTAYGQFLKANGE-QPV  222 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~-------------~~~---~~~~~~~~~~~~~~~-~~~  222 (394)
                      ..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-.             ...   ...+.-...+++.+. ..+
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v   98 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV   98 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence            4689999999999999999999984 6677 89999976310             000   000000011111111 001


Q ss_pred             ccc----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162          223 TWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (394)
Q Consensus       223 ~~~----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~  260 (394)
                      ...    ...++.++++++|+|+.|+- +.+++.++++.-..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~  139 (339)
T PRK07688         99 EAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK  139 (339)
T ss_pred             EEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            000    11245678899999998875 67788888765554

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.91  E-value=0.098  Score=55.43  Aligned_cols=40  Identities=25%  Similarity=0.221  Sum_probs=35.1

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .++.+|++.|+|.|.+|++++..| ...|++|++++|+.+.
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~  414 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER  414 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            357899999999999999999998 5789999999998654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.91  E-value=0.14  Score=51.85  Aligned_cols=89  Identities=22%  Similarity=0.320  Sum_probs=61.1

Q ss_pred             cCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH
Q 016162          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (394)
Q Consensus       163 l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (394)
                      |.||||||+|+-          .--..++++| +..|++|.+|||-.......   .+       .    ......++++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~---~~-------~----~~~~~~~~~~  372 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR---NF-------P----DVELESDAEE  372 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh---cC-------C----CceEeCCHHH
Confidence            899999999984          4567788887 79999999999976542111   00       0    1234578999


Q ss_pred             HhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       233 ll~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      .++.||+++++.. .++-+.+ +-+.+ .|| +.++++
T Consensus       373 ~~~~aDaivi~te-w~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         373 ALKGADAIVINTE-WDEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHhhCCEEEEecc-HHHHhcc-Chhhh-hcc-CCEEEe
Confidence            9999999999975 3444433 33333 565 556665

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.88  E-value=0.14  Score=50.02  Aligned_cols=71  Identities=15%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      .++||||.|+||+..+..+...-++++. ++|+++.....++.+       +.|.   . ..+.+.+++++  +.|+|++
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~-------~~Gi---~-~~~~~~e~ll~~~dIDaV~i   70 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAR-------ELGV---K-TSAEGVDGLLANPDIDIVFD   70 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHH-------HCCC---C-EEECCHHHHhcCCCCCEEEE
Confidence            3799999999999887665444466665 467665432111111       1121   1 12357888885  5788999


Q ss_pred             cCCCC
Q 016162          243 HPVLD  247 (394)
Q Consensus       243 ~lPlt  247 (394)
                      ++|..
T Consensus        71 aTp~~   75 (285)
T TIGR03215        71 ATSAK   75 (285)
T ss_pred             CCCcH
Confidence            99943

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=94.86  E-value=0.17  Score=48.39  Aligned_cols=186  Identities=18%  Similarity=0.126  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcC----Cc-------E
Q 016162          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N  191 (394)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~----G~-------~  191 (394)
                      +|--+++-+++.+|-                     .|+.|++.++.|+|.|.-|-.+|+.+ ...    |.       +
T Consensus         4 TaaV~lAgll~Al~~---------------------~g~~l~d~riv~~GAGsAg~gia~ll-~~~~~~~G~~~~eA~~~   61 (255)
T PF03949_consen    4 TAAVVLAGLLNALRV---------------------TGKKLSDQRIVFFGAGSAGIGIARLL-VAAMVREGLSEEEARKR   61 (255)
T ss_dssp             HHHHHHHHHHHHHHH---------------------HTS-GGG-EEEEEB-SHHHHHHHHHH-HHHHHCTTS-HHHHHTT
T ss_pred             hHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEeCCChhHHHHHHHH-HHHHHHhcCCHHHHhcc
Confidence            556677777777762                     34579999999999999999999987 444    66       5


Q ss_pred             EEEEcCchh-----hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc--CEEEEcCCCChhhhhcccHHHHhcCCC
Q 016162          192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK  264 (394)
Q Consensus       192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~lPlt~~t~~li~~~~l~~mk~  264 (394)
                      ++.+|+..-     ..+..+...|..   ....    .....+|.|+++.+  |+++=+-    ...++|.++.++.|.+
T Consensus        62 i~lvD~~Gll~~~r~~l~~~~~~~a~---~~~~----~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~  130 (255)
T PF03949_consen   62 IWLVDSKGLLTDDREDLNPHKKPFAR---KTNP----EKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAK  130 (255)
T ss_dssp             EEEEETTEEEBTTTSSHSHHHHHHHB---SSST----TT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHH
T ss_pred             EEEEeccceEeccCccCChhhhhhhc---cCcc----cccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhc
Confidence            888886521     112223334421   1111    11125999999999  9998663    1467899999999987


Q ss_pred             ---CcEEEEcCCCcc---cCHHHHHHHHHcCCcceEEeeccCCCCCC-C---CccccCCceEEcCCCCCCcHH-----HH
Q 016162          265 ---EAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPHIASASKW-----TR  329 (394)
Q Consensus       265 ---gailIN~aRG~~---vde~aL~~aL~~g~l~gaalDV~~~EP~~-~---~~L~~~~nvilTPHia~~t~~-----~~  329 (394)
                         ..++.=.|+...   +..++.+++ .+|+...|.=  ..-.|.. +   ...-+..|+++-|-++-....     -.
T Consensus       131 ~~erPIIF~LSNPt~~aE~~peda~~~-t~g~ai~AtG--Spf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~It  207 (255)
T PF03949_consen  131 HNERPIIFPLSNPTPKAECTPEDAYEW-TDGRAIFATG--SPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRIT  207 (255)
T ss_dssp             HSSSEEEEE-SSSCGGSSS-HHHHHHT-TTSEEEEEES--S----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--
T ss_pred             cCCCCEEEECCCCCCcccCCHHHHHhh-CCceEEEecC--CccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecC
Confidence               999999998766   333333332 2233222211  1111110 0   112345688888866542221     12


Q ss_pred             HHHHHHHHHHHHHHH
Q 016162          330 EGMATLAALNVLGKI  344 (394)
Q Consensus       330 ~~~~~~~~~ni~~~l  344 (394)
                      +.|...+++.+-++.
T Consensus       208 d~M~~aAA~aLA~~v  222 (255)
T PF03949_consen  208 DEMFLAAAEALADLV  222 (255)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhC
Confidence            566666666665544

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.84  E-value=0.11  Score=49.42  Aligned_cols=107  Identities=19%  Similarity=0.228  Sum_probs=62.4

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HHH------------HHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|++++|+|||+|.+|..+++.|+ ..|. ++..+|...-..  +..            +.+.....+.+.+. ..+..
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~  106 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET  106 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            5799999999999999999999985 5565 777887553210  000            00000111111111 00000


Q ss_pred             -c-cc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          225 -K-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       225 -~-~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                       . ..  .+++++++++|+|+.|+- +.+++..+++.-...   +.-+|..+
T Consensus       107 ~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~---~ip~v~~~  154 (245)
T PRK05690        107 INARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAA---KKPLVSGA  154 (245)
T ss_pred             EeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHh---CCEEEEee
Confidence             0 11  134567899999999885 677788777665543   33456543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.81  E-value=0.15  Score=43.99  Aligned_cols=31  Identities=23%  Similarity=0.317  Sum_probs=27.0

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCc-EEEEEcCc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~  198 (394)
                      +|.|+|+|.+|.++++.| ...|. ++..+|+.
T Consensus         1 ~VliiG~GglGs~ia~~L-~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNL-ARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCEEEEEcCC
Confidence            589999999999999998 46677 78999876

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN02527 aspartate carbamoyltransferase

Probab=94.79  E-value=0.23  Score=48.96  Aligned_cols=74  Identities=22%  Similarity=0.414  Sum_probs=49.0

Q ss_pred             ccCCCeEEEEecC---hHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      ++.|.||+++|-+   ++..+.+..+ ..+ |++|....|..-....++.+    .++..|   ..+....++++.++.|
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~~a~~~a  219 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKD----YLTSKG---VEWEESSDLMEVASKC  219 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHH----HHHHcC---CEEEEEcCHHHHhCCC
Confidence            3789999999965   6888888876 456 99999888754211111111    112112   2233457899999999


Q ss_pred             CEEEEc
Q 016162          238 DVISLH  243 (394)
Q Consensus       238 DiV~l~  243 (394)
                      |+|...
T Consensus       220 Dvvyt~  225 (306)
T PLN02527        220 DVLYQT  225 (306)
T ss_pred             CEEEEC
Confidence            999774

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.78  E-value=0.077  Score=54.46  Aligned_cols=70  Identities=14%  Similarity=0.117  Sum_probs=51.8

Q ss_pred             ccccCCCeEEEEec----------ChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC
Q 016162          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (394)
Q Consensus       160 g~~l~gktvGIIGl----------G~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (394)
                      +.++.|++|+|+|+          ..-...+++.| ...| ++|.+|||........    +       ..    .....
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~----~-------~~----~~~~~  378 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK----L-------DG----LVTLV  378 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh----c-------cC----ceeeC
Confidence            45789999999998          55778899998 6775 9999999985431100    0       00    01236


Q ss_pred             CHHHHhcccCEEEEcCC
Q 016162          229 SMDEVLREADVISLHPV  245 (394)
Q Consensus       229 ~l~ell~~aDiV~l~lP  245 (394)
                      ++++.++.||.|+++++
T Consensus       379 ~~~~~~~~ad~vvi~t~  395 (415)
T PRK11064        379 SLDEALATADVLVMLVD  395 (415)
T ss_pred             CHHHHHhCCCEEEECCC
Confidence            88999999999999987

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.78  E-value=0.019  Score=55.92  Aligned_cols=108  Identities=19%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH--HHhhhhhhhhcCCCCccccc----------cC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPVTWKR----------AS  228 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~  228 (394)
                      -...+.++.++|+|-+|-..+.. +...|+-|..+|-.+....+..  ...+.+.-+..+.  -++..          ..
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~--gGYAk~ms~~~~~~q~~  236 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESA--GGYAKEMSEEFIAKQAE  236 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhhhhhcccccccccccccC--CCccccCCHHHHHHHHH
Confidence            35677889999999999998877 4788999999987765422110  0000000001110  01111          11


Q ss_pred             CHHHHhcccCEEEEc--CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          229 SMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       229 ~l~ell~~aDiV~l~--lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      -+.+.+++.|+|+..  +|..|. -.|+.++..+.||||+++||.+
T Consensus       237 ~~a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         237 LVAEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            234667889999654  676554 5678899999999999999975

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.78  E-value=0.1  Score=55.59  Aligned_cols=92  Identities=13%  Similarity=0.142  Sum_probs=57.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH---HH-hcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---el-l~~aDiV~  241 (394)
                      .++-|+|+|++|+.+|+.| +..|.+|++.|.+++.....         ++.+.. .......+.+   +. ++++|.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~~~~---------~~~g~~-~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRVDEL---------RERGIR-AVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHHHHH---------HHCCCe-EEEcCCCCHHHHHhcCccccCEEE
Confidence            5689999999999999998 78899999999987643221         111211 1111223332   22 57899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      ++++.+.++..++-.  ...+.+...+|-
T Consensus       487 v~~~~~~~~~~iv~~--~~~~~~~~~iia  513 (558)
T PRK10669        487 LTIPNGYEAGEIVAS--AREKRPDIEIIA  513 (558)
T ss_pred             EEcCChHHHHHHHHH--HHHHCCCCeEEE
Confidence            999876665544432  222345555553

>PLN02342 ornithine carbamoyltransferase

Probab=94.76  E-value=0.74  Score=46.21  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|+||+++|=+ ++-.+.+..+ ..||++|....|..-...+...+    .++..+.  ..+....++++.++.||+|
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~----~a~~~g~--~~~~~~~d~~eav~~aDVv  263 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVE----KARAAGI--SKIEITNDPAEAVKGADVV  263 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHH----HHHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence            4789999999863 4666666665 58999999988754321111111    1111121  1223457899999999999


Q ss_pred             EEcC----CCChh--------hhhcccHHHHhcCCCCcEEEEc
Q 016162          241 SLHP----VLDKT--------TYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       241 ~l~l----Plt~~--------t~~li~~~~l~~mk~gailIN~  271 (394)
                      ..-.    -..++        ....++++.++.+|++++|.-+
T Consensus       264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp  306 (348)
T PLN02342        264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC  306 (348)
T ss_pred             EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence            8652    11111        0133555666666666655554

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=94.73  E-value=0.1  Score=42.09  Aligned_cols=73  Identities=18%  Similarity=0.152  Sum_probs=44.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l  242 (394)
                      .++.|+|+|+.|++++.......|+. +.++|..+...-.           ..+    +..-+.+++++.+.  .|+-++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-----------~i~----gipV~~~~~~l~~~~~i~iaii   68 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-----------EIG----GIPVYGSMDELEEFIEIDIAII   68 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-----------EET----TEEEESSHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-----------EEC----CEEeeccHHHhhhhhCCCEEEE
Confidence            47999999999999885443444543 4566766543100           011    12223477777766  999999


Q ss_pred             cCCCChhhhhcc
Q 016162          243 HPVLDKTTYHLI  254 (394)
Q Consensus       243 ~lPlt~~t~~li  254 (394)
                      ++|. +..+..+
T Consensus        69 ~VP~-~~a~~~~   79 (96)
T PF02629_consen   69 TVPA-EAAQEVA   79 (96)
T ss_dssp             ES-H-HHHHHHH
T ss_pred             EcCH-HHHHHHH
Confidence            9993 3444444

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.73  E-value=0.35  Score=44.92  Aligned_cols=98  Identities=20%  Similarity=0.167  Sum_probs=60.0

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH-----hccc
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LREA  237 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~a  237 (394)
                      ..|.++.|.|.|.+|+.+++.+ +..|.+|++.++..... + +...       .+..........+..+.     -...
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~-~-~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL-E-LAKE-------LGADHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH-H-HHHH-------hCCceeccCCcCCHHHHHHHhcCCCC
Confidence            3578999999999999999985 89999999999876432 1 1111       11111000011122211     2457


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      |+++.+++...     .-...+..|+++..+++++...
T Consensus       203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence            88888876311     1244567788888888887643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.73  E-value=0.13  Score=55.41  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=61.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (394)
                      ..++.|+|+|++|+.+++.| ...|.++++.|.+++.. +.        +++.|. ........+.+-+    +.+||.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAV-NL--------MRKYGY-KVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence            35799999999999999998 78899999999987642 21        122222 1111122333322    6789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +++++....+..++  .....+.|...+|--+|
T Consensus       469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence            99999655554433  33444556666665544

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=94.71  E-value=0.38  Score=48.04  Aligned_cols=75  Identities=13%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+.|+||+++|=   +++..+.+..++.-+|++|.+..|..-.......+    .++..|   ..+....++++.++.||
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~ea~~~aD  228 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVIS----DIENAG---HKITITDQLEGNLDKAD  228 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHHccCC
Confidence            588999999998   57788888765435599999988754321112111    122222   22334579999999999


Q ss_pred             EEEEc
Q 016162          239 VISLH  243 (394)
Q Consensus       239 iV~l~  243 (394)
                      +|..-
T Consensus       229 vvyt~  233 (338)
T PRK08192        229 ILYLT  233 (338)
T ss_pred             EEEEc
Confidence            99874

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.65  E-value=0.11  Score=54.60  Aligned_cols=118  Identities=18%  Similarity=0.166  Sum_probs=70.8

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh-HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      +.+++|.|+|+|..|.++|+.| ...|.+|.++|..... ....        +...+ .+..........+.+..+|+|+
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~--------L~~~~-~~~~~~~g~~~~~~~~~~d~vv   74 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAA--------LRAEL-PDAEFVGGPFDPALLDGVDLVA   74 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHH--------HHhhc-CCcEEEeCCCchhHhcCCCEEE
Confidence            5688999999999999999987 7999999999975432 1111        11111 0111111111234567899998


Q ss_pred             Ec--CCCC-----hhh-------hhcccH-HHH-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          242 LH--PVLD-----KTT-------YHLINK-ERL-ATM--------KKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       242 l~--lPlt-----~~t-------~~li~~-~~l-~~m--------k~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      ..  +|.+     |.-       ..++.+ +.+ ..+        ++..+-|--+.|+.--..-|...|++..
T Consensus        75 ~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         75 LSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             ECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            86  4543     211       122322 222 112        2245667777899888888888887643

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.63  E-value=0.27  Score=51.11  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=72.9

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +..+.++++.|||.|.+|.++|+.| ...|.+|.++|+..........    +.++..|.   ....-.... ....+|+
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~----~~l~~~gv---~~~~~~~~~-~~~~~D~   81 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALA----AILEALGA---TVRLGPGPT-LPEDTDL   81 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHH----HHHHHcCC---EEEECCCcc-ccCCCCE
Confidence            3467899999999999999999987 6899999999976432211100    11222232   111111111 3456899


Q ss_pred             EEEcC---CCChhhh-------hcccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          240 ISLHP---VLDKTTY-------HLINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       240 V~l~l---Plt~~t~-------~li~~-~~l-~~mk~----gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      |++..   |.++...       .++++ +.+ ..+.+    ..+-|--+.|+.--..-|...|+..
T Consensus        82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence            98875   3333211       12333 222 33422    2466777789988888888888763

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=94.59  E-value=0.046  Score=55.16  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=31.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .++|||||-|..|+.++..+ +.+|.+|+++|+++..
T Consensus         2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~   37 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS   37 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            47899999999999999984 8999999999987643

>PRK06153 hypothetical protein; Provisional

Probab=94.53  E-value=0.16  Score=51.42  Aligned_cols=110  Identities=17%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh--------------hHH-H--HHHHhhhhhhhhcCCCCc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------TRL-E--KFVTAYGQFLKANGEQPV  222 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~--------------~~~-~--~~~~~~~~~~~~~~~~~~  222 (394)
                      ..|++++|+|||+|.+|+.++..|+ ..|. +++.+|...-              ... .  .+.+.....+...+. .+
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-~I  249 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-GI  249 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-eE
Confidence            3689999999999999999999986 5555 7888886511              100 0  111111111121111 11


Q ss_pred             cc-cccCCHH--HHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          223 TW-KRASSMD--EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       223 ~~-~~~~~l~--ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      .. ....+.+  +.+..+|+|+.|+. +.+++.++++....   .+.-+|+++-|-.
T Consensus       250 ~~~~~~I~~~n~~~L~~~DiV~dcvD-n~~aR~~ln~~a~~---~gIP~Id~G~~l~  302 (393)
T PRK06153        250 VPHPEYIDEDNVDELDGFTFVFVCVD-KGSSRKLIVDYLEA---LGIPFIDVGMGLE  302 (393)
T ss_pred             EEEeecCCHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEeeecce
Confidence            11 0111211  35788999999997 55678777766554   3556888766543

>PLN02602 lactate dehydrogenase

Probab=94.53  E-value=0.14  Score=51.44  Aligned_cols=103  Identities=18%  Similarity=0.224  Sum_probs=59.6

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC-ccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.+|..+|-.++. ++.-++..+|...........+-.    +...... .......+.++ +++||+|+++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~----~~~~~~~~~~i~~~~dy~~-~~daDiVVit  112 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQ----HAAAFLPRTKILASTDYAV-TAGSDLCIVT  112 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHH----hhhhcCCCCEEEeCCCHHH-hCCCCEEEEC
Confidence            699999999999999987632 444589999987644322222210    1110111 12221235554 8999999998


Q ss_pred             CCC--Ch-hhh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016162          244 PVL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPl--t~-~t~-~li--~-------~~~l~~mk~gailIN~aR  273 (394)
                      .-.  .+ +++ .++  |       .+.+....|.+++|+++.
T Consensus       113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            432  22 222 222  1       123444568889999873

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.50  E-value=0.3  Score=49.45  Aligned_cols=103  Identities=22%  Similarity=0.201  Sum_probs=61.6

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh------------------hHHHHHHHhhhhhhhhcCC-C
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGE-Q  220 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~-~  220 (394)
                      ..+.+++|.|+|.|.+|..+++.| ...|. ++..+|+..-                  .+.+...+    .+.+... .
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~L-a~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~----~l~~~np~v  205 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYL-AAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQ----RLAALNPDV  205 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHH-HHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHH----HHHHHCCCC
Confidence            468999999999999999999998 46677 7889988620                  11111111    1111111 1


Q ss_pred             Cccc-c-c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          221 PVTW-K-R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       221 ~~~~-~-~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .+.. . .  ..+++++++++|+|+.|+- +.+++.++++.-..   .+.-+|..+
T Consensus       206 ~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~---~~ip~i~~~  257 (376)
T PRK08762        206 QVEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK---LGKPLVYGA  257 (376)
T ss_pred             EEEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence            1100 0 1  1235667889999988875 56677777655443   334455543

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.46  E-value=0.087  Score=52.68  Aligned_cols=98  Identities=18%  Similarity=0.276  Sum_probs=53.6

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcC-CcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH-HhcccCEEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVIS  241 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~  241 (394)
                      ++|+|+|. |.+|+.+++.++ .. ++++.+ .++.....  ...+.+. ..  .+....   .+.++++ ...++|+|+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~--~l~~~~~-~~--~~~~~~---~~~~~~~~~~~~vD~Vf   73 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGK--PLSDVHP-HL--RGLVDL---VLEPLDPEILAGADVVF   73 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCc--chHHhCc-cc--ccccCc---eeecCCHHHhcCCCEEE
Confidence            58999996 999999999984 54 677655 55322111  0001110 00  000011   1222322 457899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v  277 (394)
                      +|+|.... ..+. .   ...+.|..+||.|-.-=.
T Consensus        74 ~alP~~~~-~~~v-~---~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         74 LALPHGVS-MDLA-P---QLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             ECCCcHHH-HHHH-H---HHHhCCCEEEECCcccCC
Confidence            99994322 2221 1   223579999999843333

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.46  E-value=0.34  Score=50.52  Aligned_cols=117  Identities=17%  Similarity=0.193  Sum_probs=72.2

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+.++++.|+|+|.+|.++|+.| ...|++|.++|+..... .+..       +..|   +.........+.+..+|+|+
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l-------~~~g---i~~~~~~~~~~~~~~~d~vV   79 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLI-------EVTG---VADISTAEASDQLDSFSLVV   79 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHH-------HhcC---cEEEeCCCchhHhcCCCEEE
Confidence            57889999999999999999997 78999999999865432 1111       1112   11111112234467889987


Q ss_pred             Ec--CC-CChhhh-------hcccHHHHh-c------C--CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          242 LH--PV-LDKTTY-------HLINKERLA-T------M--KKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       242 l~--lP-lt~~t~-------~li~~~~l~-~------m--k~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      ..  +| ..|...       .++++-.+. .      +  +...+-|--+.|+.--..-|...|+...
T Consensus        80 ~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         80 TSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             eCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            76  33 233321       123332332 1      1  2235567777899988888888887643

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.37  E-value=0.23  Score=51.38  Aligned_cols=113  Identities=22%  Similarity=0.230  Sum_probs=70.3

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++.|++|.|||+|.+|.++|+.| ...|.+|.++|....... .        +...|..   .... +. +-+..+|+|+
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~~-~~~~~~d~vv   70 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-RT-ADWSGFAALV   70 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence            46789999999999999999987 799999999997643221 1        1112221   1111 12 2356799887


Q ss_pred             EcC--CCC-h----hh---hh----cccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          242 LHP--VLD-K----TT---YH----LINK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       242 l~l--Plt-~----~t---~~----li~~-~~l~~-m-----k~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ..-  |.+ +    ..   +.    ++.+ +.+.. +     +...+-|.-+.|+.--..-|...|+..
T Consensus        71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            642  322 2    11   11    1332 22222 2     344566788899999888888888763

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=94.24  E-value=2.8  Score=41.47  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|+||+++|- +++..+.+..+ ..||++|.+..|....  ....+...+.+...|  .  +....++++.++.+|+|
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~--~~~~~~~~~~~~~~g--~--i~~~~d~~~av~~aDvv  222 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAK--ENIHAQTVERAKKKG--T--LSWEMNLHKAVSHADYV  222 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCcc--HHHHHHHHHHHHhcC--C--eEEEeCHHHHhCCCCEE
Confidence            478999999997 68888888876 6899999999885421  110000000011112  1  22246899999999999


Q ss_pred             EEc
Q 016162          241 SLH  243 (394)
Q Consensus       241 ~l~  243 (394)
                      ..-
T Consensus       223 y~d  225 (311)
T PRK14804        223 YTD  225 (311)
T ss_pred             Eee
Confidence            763

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.24  E-value=0.2  Score=47.55  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH-H-----------HHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K-----------FVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~-~-----------~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|++++|.|+|.|.+|..+|+.|+ ..|. +++.+|+..-..  +- +           ..+.-...+++.+. ..+..
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~   98 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP   98 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            4689999999999999999999985 5565 677877654221  00 0           00000011111110 00000


Q ss_pred             c--cc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162          225 K--RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (394)
Q Consensus       225 ~--~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~  260 (394)
                      .  ..  .++++++.++|+|+.|+- +.+++.++++.-.+
T Consensus        99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~  137 (240)
T TIGR02355        99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFA  137 (240)
T ss_pred             EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            0  11  235678899999998885 67788888765554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=94.23  E-value=1.2  Score=44.31  Aligned_cols=106  Identities=16%  Similarity=0.172  Sum_probs=62.5

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+.|+||+++|=+  ++.++.+..+ ..||++|....|..-...+...+..-......|   ..+....++++.++.||+
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv  227 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDV  227 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            3789999999975  7888888876 689999999887532111111110000011112   123345789999999999


Q ss_pred             EEEcC----CCCh----h-----hhhcccHHHHhcCC-CCcEEEEc
Q 016162          240 ISLHP----VLDK----T-----TYHLINKERLATMK-KEAILVNC  271 (394)
Q Consensus       240 V~l~l----Plt~----~-----t~~li~~~~l~~mk-~gailIN~  271 (394)
                      |..-.    ....    +     ...-++++.++.++ |++++.-+
T Consensus       228 vy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp  273 (332)
T PRK04284        228 IYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC  273 (332)
T ss_pred             EEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence            97642    1000    0     11235666666664 46666655

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.23  E-value=0.44  Score=49.12  Aligned_cols=119  Identities=13%  Similarity=0.118  Sum_probs=71.7

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +.++++.|+|.|.+|.++|+.| ...|.+|.++|..........       ++.. ..++....-...++.+..+|+|+.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~-------l~~~-~~gi~~~~g~~~~~~~~~~d~vv~   73 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ-------IGKM-FDGLVFYTGRLKDALDNGFDILAL   73 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH-------Hhhc-cCCcEEEeCCCCHHHHhCCCEEEE
Confidence            5689999999999999999987 689999999997654311110       1110 011111111112345578999976


Q ss_pred             cC--C-CChhhhh-------cccH-HHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          243 HP--V-LDKTTYH-------LINK-ERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       243 ~l--P-lt~~t~~-------li~~-~~l~~-mk---~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      ..  | ..|.-..       ++.+ +.+.. ++   ...+-|--+.|+.--..-|...|+...
T Consensus        74 spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         74 SPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            53  3 2222221       2322 23323 32   245667778899988888888887643

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.23  E-value=0.094  Score=53.25  Aligned_cols=107  Identities=15%  Similarity=0.209  Sum_probs=61.5

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH-HHhcccCE
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADV  239 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDi  239 (394)
                      ...++|+|+|. |.+|+++.+.| ... ++++..+.+....- ....+.+. ++.. +  .  .....+++ +.++++|+
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL-~~hP~~el~~l~s~~saG-~~i~~~~~-~l~~-~--~--~~~~~~~~~~~~~~~Dv  107 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLL-ANHPDFEITVMTADRKAG-QSFGSVFP-HLIT-Q--D--LPNLVAVKDADFSDVDA  107 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHH-HhCCCCeEEEEEChhhcC-CCchhhCc-cccC-c--c--ccceecCCHHHhcCCCE
Confidence            35568999997 99999999997 455 77888776543221 10000000 0000 0  0  01112222 22588999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~  283 (394)
                      |++++|. ...     .+....|+.|..+||.|..--.+.++.+
T Consensus       108 Vf~Alp~-~~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~~y  145 (381)
T PLN02968        108 VFCCLPH-GTT-----QEIIKALPKDLKIVDLSADFRLRDIAEY  145 (381)
T ss_pred             EEEcCCH-HHH-----HHHHHHHhCCCEEEEcCchhccCCcccc
Confidence            9999994 233     3334445678999999865555544444

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.20  E-value=0.14  Score=50.45  Aligned_cols=72  Identities=19%  Similarity=0.295  Sum_probs=44.2

Q ss_pred             eEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-C---CccccccCCHHHHhcccCEEE
Q 016162          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-Q---PVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~ell~~aDiV~  241 (394)
                      +|+|||.|.||..+|..++. ++.-++..+|...........+     +.+... .   ..... ..+ .+.++.||+|+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i~-~~~-y~~~~~aDivv   73 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKIR-AGD-YDDCADADIIV   73 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEEE-ECC-HHHhCCCCEEE
Confidence            68999999999999987643 4444899999875432222222     111111 0   11111 234 46689999999


Q ss_pred             EcCC
Q 016162          242 LHPV  245 (394)
Q Consensus       242 l~lP  245 (394)
                      ++.-
T Consensus        74 itaG   77 (307)
T cd05290          74 ITAG   77 (307)
T ss_pred             ECCC
Confidence            8753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.19  E-value=0.2  Score=50.69  Aligned_cols=98  Identities=20%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--H------------HHHHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L------------EKFVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~------------~~~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|.+++|.|||+|.+|..+++.|+ ..|. ++..+|...-..  +            ....+.....+.+.+. ..+..
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~  115 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA  115 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence            5699999999999999999999984 6676 788888762110  0            0000111111222111 11110


Q ss_pred             c--c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162          225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (394)
Q Consensus       225 ~--~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~  260 (394)
                      .  .  ..+++++++++|+|+.|+- +.+++.++++.-..
T Consensus       116 ~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~  154 (370)
T PRK05600        116 LRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI  154 (370)
T ss_pred             eeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            0  1  1245678999999988875 67888888765443

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.18  E-value=0.21  Score=45.97  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~  199 (394)
                      +.|.+++|.|+|+|.+|.++++.|+ ..|. ++..+|...
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence            5689999999999999999999984 6677 688888663

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.18  E-value=0.21  Score=54.05  Aligned_cols=94  Identities=19%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (394)
                      ..++-|+|+|++|+.+++.| ...|.++++.|.++.....         +++.|. .+......+.+-+    +.++|.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~---------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHIET---------LRKFGM-KVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHHHH---------HHhcCC-eEEEEeCCCHHHHHhcCCCcCCEE
Confidence            46899999999999999998 7889999999988764221         122222 1111122343322    5689999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      +++++.++.+..++  .....+.|...++--
T Consensus       469 vv~~~d~~~n~~i~--~~ar~~~p~~~iiaR  497 (621)
T PRK03562        469 INAIDDPQTSLQLV--ELVKEHFPHLQIIAR  497 (621)
T ss_pred             EEEeCCHHHHHHHH--HHHHHhCCCCeEEEE
Confidence            99998655544332  333344455555443

>PRK05086 malate dehydrogenase; Provisional

Probab=94.14  E-value=0.2  Score=49.49  Aligned_cols=101  Identities=26%  Similarity=0.272  Sum_probs=58.0

Q ss_pred             CeEEEEec-ChHHHHHHHHHHh--cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCCHHHHhcccCEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~~aDiV  240 (394)
                      ++++|||. |.||+.+|..++.  .++.++..+|+..... ....+     +.+... ......  ..++.+.++.+|+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~-g~alD-----l~~~~~-~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP-GVAVD-----LSHIPT-AVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc-ceehh-----hhcCCC-CceEEEeCCCCHHHHcCCCCEE
Confidence            58999999 9999999977633  4566889999864321 00001     111110 011111  24667788999999


Q ss_pred             EEcCCC--Chh-hh-hccc------HH---HHhcCCCCcEEEEcCC
Q 016162          241 SLHPVL--DKT-TY-HLIN------KE---RLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPl--t~~-t~-~li~------~~---~l~~mk~gailIN~aR  273 (394)
                      ++|.-.  .+. ++ .++.      .+   .+....+.+++++++.
T Consensus        74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN  119 (312)
T PRK05086         74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN  119 (312)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            998653  111 11 1111      22   2333457889999866

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=94.13  E-value=1.3  Score=43.64  Aligned_cols=65  Identities=14%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             cCCCeEEEEec---ChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       163 l~gktvGIIGl---G~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +.|.+|+++|=   +++..+.+..+ ..||+ +|.+..|..-.  ..            ......+....++++.++.+|
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD  219 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD  219 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence            78999999998   59999999986 68999 99998875321  10            000012334578999999999


Q ss_pred             EEEE
Q 016162          239 VISL  242 (394)
Q Consensus       239 iV~l  242 (394)
                      +|..
T Consensus       220 vvy~  223 (310)
T PRK13814        220 VIVT  223 (310)
T ss_pred             EEEE
Confidence            9976

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=94.04  E-value=0.055  Score=49.20  Aligned_cols=68  Identities=13%  Similarity=0.243  Sum_probs=46.3

Q ss_pred             eEEEEecChHHHHHHHH-HHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~-la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      ++.|||.|++|++++.. ..+..||++. +||..+...-.           .  ..++..+..+++++.++  +.|+.++
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~-----------~--~~~v~V~~~d~le~~v~~~dv~iaiL  152 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT-----------K--IGDVPVYDLDDLEKFVKKNDVEIAIL  152 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCc-----------c--cCCeeeechHHHHHHHHhcCccEEEE
Confidence            69999999999999953 2246788754 78887653110           1  11233445567888887  6788899


Q ss_pred             cCCCC
Q 016162          243 HPVLD  247 (394)
Q Consensus       243 ~lPlt  247 (394)
                      |+|..
T Consensus       153 tVPa~  157 (211)
T COG2344         153 TVPAE  157 (211)
T ss_pred             EccHH
Confidence            99943

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.96  E-value=0.34  Score=50.25  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             ccCCCeEEEEecChHHHH-HHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~-vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+++++.|+|+|..|.+ +|+.| ...|.+|.++|.......++        +...|.   ......+ .+.+..+|+|
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~gi---~~~~~~~-~~~~~~~d~v   70 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELGA---IIFIGHD-AENIKDADVV   70 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCCC-HHHCCCCCEE
Confidence            356789999999999999 79987 79999999999865432221        122221   1111123 3456789999


Q ss_pred             EEcC--CCC-hhhh-------hcccHHHH-hc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          241 SLHP--VLD-KTTY-------HLINKERL-AT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       241 ~l~l--Plt-~~t~-------~li~~~~l-~~-mk-~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      +...  |.+ |...       .++++-.| .. ++ ...+-|--+.|+.--+.-+...|+...
T Consensus        71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            7763  322 2221       23444333 23 33 345667778899988888888887643

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=93.94  E-value=0.24  Score=48.59  Aligned_cols=100  Identities=22%  Similarity=0.322  Sum_probs=57.9

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh-----H--H---HH------HHHhhhhhhhhcCCCCcccc----
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-----R--L---EK------FVTAYGQFLKANGEQPVTWK----  225 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~-----~--~---~~------~~~~~~~~~~~~~~~~~~~~----  225 (394)
                      +|.|+|.|.+|..+|+.| .+.|. +++.+|...-.     +  +   ++      +.+.-.+.+++... .+...    
T Consensus         1 kVLIvGaGGLGs~vA~~L-a~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP-~v~v~~~~~   78 (307)
T cd01486           1 KCLLLGAGTLGCNVARNL-LGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFP-SIDATGIVL   78 (307)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCC-CcEEEEeee
Confidence            589999999999999998 46776 67777743211     0  0   00      00000011111110 00000    


Q ss_pred             -------------------ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          226 -------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       226 -------------------~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                                         ....++++++++|+|+.++. +.+++.+++.--...   +..+|+.+
T Consensus        79 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~---~k~~I~aa  140 (307)
T cd01486          79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAAK---NKLVINAA  140 (307)
T ss_pred             eccccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHh---CCcEEEEE
Confidence                               11236789999999999994 788888876544432   33666654

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.93  E-value=0.13  Score=53.56  Aligned_cols=117  Identities=20%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +.||+++|+|+|.-|.++|+.| ...|++|+++|...........+     ++..+.   ......+ ++.+.++|+|+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~~-----l~~~~~---~~~~~~~-~~~~~~~d~vV~   75 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVGA-----LADAAL---LVETEAS-AQRLAAFDVVVK   75 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHHH-----HhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence            4689999999999999999997 79999999999654322111000     111111   0111112 355678999977


Q ss_pred             cC--CCC-hhhh-------hcccHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          243 HP--VLD-KTTY-------HLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       243 ~l--Plt-~~t~-------~li~~~~l--~~-mk-----~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ..  |.+ |.-+       .++++-.|  .. ++     +..+-|--+.|+.--+.-|...|+..
T Consensus        76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            63  422 2211       24544333  33 32     24566777889998888888888753

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=93.92  E-value=0.22  Score=48.97  Aligned_cols=71  Identities=21%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcCC--c-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGFK--M-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~G--~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  239 (394)
                      .++||||+|.+++. .+..+ ...+  + -|.++|++.+. .+.+.+.|+       ..    ..+.+++++++.  .|+
T Consensus         4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~~-------~~----~~~~~~~~ll~~~~iD~   70 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEFG-------IA----KAYTDLEELLADPDIDA   70 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHcC-------CC----cccCCHHHHhcCCCCCE
Confidence            48999999988754 66665 4554  3 45567888765 333333332       11    245799999986  599


Q ss_pred             EEEcCCCChh
Q 016162          240 ISLHPVLDKT  249 (394)
Q Consensus       240 V~l~lPlt~~  249 (394)
                      |++|+|..-.
T Consensus        71 V~Iatp~~~H   80 (342)
T COG0673          71 VYIATPNALH   80 (342)
T ss_pred             EEEcCCChhh
Confidence            9999995433

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.87  E-value=0.29  Score=44.07  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=52.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh---hHHHH----------HHHhhhhhhhhcCC-CCcccc----cc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA---TRLEK----------FVTAYGQFLKANGE-QPVTWK----RA  227 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~---~~~~~----------~~~~~~~~~~~~~~-~~~~~~----~~  227 (394)
                      +|+|||.|.+|..+++.|+ ..|. ++..+|...-   ....+          ..+.....+++.+. ......    ..
T Consensus         1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            5899999999999999984 5677 5888887651   00000          00000011111111 111000    01


Q ss_pred             CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          228 SSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       228 ~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      .+++++++++|+|+.|+- +.+++..++......
T Consensus        80 ~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~  112 (174)
T cd01487          80 NNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN  112 (174)
T ss_pred             hhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence            235677888999988854 677777666555543

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07806 short chain dehydrogenase; Provisional

Probab=93.60  E-value=0.31  Score=45.32  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+.|+++.|.|. |.||+.+++.| ...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~   41 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA   41 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence            367899999996 99999999998 577999998887653

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.59  E-value=0.39  Score=49.48  Aligned_cols=96  Identities=14%  Similarity=0.174  Sum_probs=62.3

Q ss_pred             ccccCCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC
Q 016162          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (394)
Q Consensus       160 g~~l~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
                      +..+.|++|+|+|+          ..-+..+++.| ...|.+|.+|||........  ..+       +        ...
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~~-------~--------~~~  370 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--REY-------G--------IIP  370 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hhc-------C--------ccc
Confidence            45689999999999          56788999998 68899999999984321110  000       0        011


Q ss_pred             HHH-HhcccCEEEEcCCCChhhhhcccHHHHh-cCCCCcEEEEcCCCcc
Q 016162          230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (394)
Q Consensus       230 l~e-ll~~aDiV~l~lPlt~~t~~li~~~~l~-~mk~gailIN~aRG~~  276 (394)
                      +++ .+..||.|++++. .++-.. ++-+.+. .|+...++|| +|+-+
T Consensus       371 ~~~~~~~~ad~vvi~t~-h~~f~~-~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        371 VSEVKSSHYDAIIVAVG-HQQFKQ-MGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             chhhhhcCCCEEEEccC-CHHhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence            222 3678999999987 344333 4544443 4554568998 45444

>PRK04148 hypothetical protein; Provisional

Probab=93.52  E-value=0.24  Score=42.85  Aligned_cols=71  Identities=17%  Similarity=0.127  Sum_probs=47.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      +++++.+||+| -|..+|..| ...|.+|++.|.++.... ..        ...+........+..--++.+.+|+|-.+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~aV~-~a--------~~~~~~~v~dDlf~p~~~~y~~a~liysi   84 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKAVE-KA--------KKLGLNAFVDDLFNPNLEIYKNAKLIYSI   84 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHHHH-HH--------HHhCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence            56799999999 999999998 588999999999886422 11        11111111111122234678889999666


Q ss_pred             CC
Q 016162          244 PV  245 (394)
Q Consensus       244 lP  245 (394)
                      =|
T Consensus        85 rp   86 (134)
T PRK04148         85 RP   86 (134)
T ss_pred             CC
Confidence            55

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.49  E-value=0.48  Score=46.70  Aligned_cols=76  Identities=22%  Similarity=0.273  Sum_probs=43.5

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCc--EEEEEcCch--hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~--~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++|+|+|. |.+|..+|..++ ..|.  +|+.+|+..  ........+.+ +.+...+. ........+.+ .+..||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~-d~~~~~~~-~~~i~~~~d~~-~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIY-DALAAAGI-DAEIKISSDLS-DVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhh-hchhccCC-CcEEEECCCHH-HhCCCCEE
Confidence            48999998 999999999874 4443  699999854  21111111111 00001111 11121223544 49999999


Q ss_pred             EEcCC
Q 016162          241 SLHPV  245 (394)
Q Consensus       241 ~l~lP  245 (394)
                      +++..
T Consensus        77 iitag   81 (309)
T cd05294          77 IITAG   81 (309)
T ss_pred             EEecC
Confidence            99875

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.44  E-value=0.17  Score=49.95  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcC-CcEEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL  197 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~  197 (394)
                      .+|||=|||+||+.++|.+...- .|+|++.+-
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence            37999999999999999974334 499998876

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.38  E-value=0.33  Score=46.28  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             cCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       163 l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      +.||++.|.|.+   .||+++|+.|+ .-|++|+..+++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence            689999999997   59999999984 679999988776

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.37  E-value=0.24  Score=46.02  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ++.++++.|+|. |.||+.+++.| ...|++|++++|+...
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            467899999985 89999999998 5779999999998754

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.33  E-value=0.12  Score=45.94  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=47.5

Q ss_pred             EEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC--ccccccCCHHHHhcccCEEEEcC
Q 016162          168 VGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       168 vGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      |.|+| .|.+|+.+++.| ...|.+|+++.|++.+....           .+...  ..+....++.+.++.+|.|+.++
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~~-----------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAEDS-----------PGVEIIQGDLFDPDSVKAALKGADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHHC-----------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhcccc-----------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence            57898 599999999997 68889999999987653210           01100  01111234567788999999998


Q ss_pred             CCChh
Q 016162          245 VLDKT  249 (394)
Q Consensus       245 Plt~~  249 (394)
                      +.+..
T Consensus        69 ~~~~~   73 (183)
T PF13460_consen   69 GPPPK   73 (183)
T ss_dssp             HSTTT
T ss_pred             hhhcc
Confidence            74433

...

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=93.30  E-value=0.69  Score=45.57  Aligned_cols=65  Identities=20%  Similarity=0.354  Sum_probs=48.2

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+.|++|+++|=   +++..+.+..+ ..||++|++..|..-.. .             ...  ......++++.++.||
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~-~-------------~~~--~~~~~~d~~ea~~~aD  215 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP-E-------------GMP--EYGVHTDLDEVIEDAD  215 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc-c-------------ccc--ceEEECCHHHHhCCCC
Confidence            378999999987   58999999986 68999999998754210 0             000  0123578999999999


Q ss_pred             EEEEc
Q 016162          239 VISLH  243 (394)
Q Consensus       239 iV~l~  243 (394)
                      +|...
T Consensus       216 vvyt~  220 (305)
T PRK00856        216 VVMML  220 (305)
T ss_pred             EEEEC
Confidence            99764

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=93.19  E-value=0.6  Score=48.46  Aligned_cols=111  Identities=20%  Similarity=0.149  Sum_probs=71.4

Q ss_pred             ccCCCeEEEEec----ChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc
Q 016162          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (394)
Q Consensus       162 ~l~gktvGIIGl----G~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (394)
                      -++-++|.|||.    |++|..+.+.+ +..|+  +|+.++|....                 ..+  ...+.+++++-.
T Consensus         4 l~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~-----------------i~G--~~~~~sl~~lp~   63 (447)
T TIGR02717         4 LFNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGE-----------------ILG--VKAYPSVLEIPD   63 (447)
T ss_pred             ccCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCc-----------------cCC--ccccCCHHHCCC
Confidence            356789999999    88999999997 66665  79888886432                 111  223568999878


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCC-CcEEEEcCCCc-----ccCHHHHHHHHHcCCcceEE
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKK-EAILVNCSRGP-----VIDEVALVEHLKQNPMFRVG  295 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~-gailIN~aRG~-----~vde~aL~~aL~~g~l~gaa  295 (394)
                      ..|++++++|. +.+...+. +..+ ..- ..+++..+-++     ...+++|.+..+++.+.-.+
T Consensus        64 ~~Dlavi~vp~-~~~~~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        64 PVDLAVIVVPA-KYVPQVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             CCCEEEEecCH-HHHHHHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            88999999993 33344442 2222 333 34444333222     22357788888777665444

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=93.17  E-value=0.12  Score=45.60  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=26.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEc-Cc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LY  198 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d-~~  198 (394)
                      +|||-|||+||+.++|.+...-.++|.+.+ +.
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            799999999999999997556788887664 44

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK15076 alpha-galactosidase; Provisional

Probab=93.16  E-value=0.26  Score=50.92  Aligned_cols=127  Identities=14%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CeEEEEecChHHHHHHH--HHH--hcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~--~la--~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+|+|||.|.+|...+-  .++  .++ +.+|+.||......... .....+.....+ .........++.+.++.||+|
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~-~~l~~~~~~~~~-~~~~i~~ttD~~eal~dADfV   79 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEES-EIVARKLAESLG-ASAKITATTDRREALQGADYV   79 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHH-HHHHHHHHHhcC-CCeEEEEECCHHHHhCCCCEE
Confidence            48999999999955443  222  344 45999999987542211 010111111112 223344456888999999999


Q ss_pred             EEcCCCC--hhh----------hhcc-----------------c-------HHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 016162          241 SLHPVLD--KTT----------YHLI-----------------N-------KERLATMKKEAILVNCSRGPVIDEVALVE  284 (394)
Q Consensus       241 ~l~lPlt--~~t----------~~li-----------------~-------~~~l~~mk~gailIN~aRG~~vde~aL~~  284 (394)
                      +.++-..  +.-          ++++                 +       .+.+....|++++||++..-=+-+.++. 
T Consensus        80 v~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-  158 (431)
T PRK15076         80 INAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-  158 (431)
T ss_pred             eEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-
Confidence            8876432  111          0111                 0       1223334589999999886655555555 


Q ss_pred             HHHcCCcceEE
Q 016162          285 HLKQNPMFRVG  295 (394)
Q Consensus       285 aL~~g~l~gaa  295 (394)
                      .+...++.|.+
T Consensus       159 ~~~~~rviG~c  169 (431)
T PRK15076        159 RYPGIKTVGLC  169 (431)
T ss_pred             cCCCCCEEEEC
Confidence            22334455554

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.11  E-value=0.21  Score=49.61  Aligned_cols=76  Identities=25%  Similarity=0.307  Sum_probs=46.6

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc---CCHHHHhcc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE  236 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~  236 (394)
                      .++.++|+|||. |+||+.+|..++. +..-++..+|.....  ....+     +.+... .......   .+..+.++.
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~--g~a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP--GVAAD-----LSHIDT-PAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc--ccccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence            467789999999 9999999988631 455689999983211  10001     111111 1111111   223678999


Q ss_pred             cCEEEEcCC
Q 016162          237 ADVISLHPV  245 (394)
Q Consensus       237 aDiV~l~lP  245 (394)
                      ||+|+++.-
T Consensus        77 aDvVVitaG   85 (321)
T PTZ00325         77 ADLVLICAG   85 (321)
T ss_pred             CCEEEECCC
Confidence            999998754

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.06  E-value=0.72  Score=47.28  Aligned_cols=115  Identities=18%  Similarity=0.219  Sum_probs=70.1

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh-hcCCCCccccccCCHHHHhcccCEEEEcC-
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASSMDEVLREADVISLHP-  244 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ell~~aDiV~l~l-  244 (394)
                      ++.|||+|.+|.++|+.| ...|.+|.++|............    .++ ..|   +....-.+ .+.+..+|+|+... 
T Consensus         1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~~g---i~~~~g~~-~~~~~~~d~vv~sp~   71 (433)
T TIGR01087         1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLNEG---SVLHTGLH-LEDLNNADLVVKSPG   71 (433)
T ss_pred             CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhccC---cEEEecCc-hHHhccCCEEEECCC
Confidence            478999999999999997 79999999999765432211000    011 012   11111123 35568899887653 


Q ss_pred             -CC-Chhhh-------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          245 -VL-DKTTY-------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       245 -Pl-t~~t~-------~li~~~-~l-~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                       |. +|+-.       .++.+- .+ ..++...+-|.-+.|+.--..-|...|+...
T Consensus        72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence             32 23221       133333 22 3344456677888999998888888888644

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.03  E-value=0.48  Score=43.79  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .+.++++.|.| .|.||+.+|+.| ...|++|+...++.
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~   39 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGS   39 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCC
Confidence            36789999998 599999999998 57799988776543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.98  E-value=0.93  Score=41.75  Aligned_cols=39  Identities=23%  Similarity=0.237  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ++.|+++.|.|. |.||+.+++.+ ...|++|++.+|+...
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l-~~~G~~V~~~~r~~~~   41 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFA-LKEGAQVCINSRNENK   41 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            367899999987 77999999997 5789999999998654

>PLN00106 malate dehydrogenase

Probab=92.94  E-value=0.23  Score=49.28  Aligned_cols=105  Identities=23%  Similarity=0.245  Sum_probs=60.8

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCC-Cccc-cccCCHHHHhcccCE
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDi  239 (394)
                      ..++|+|||. |++|..+|..|+. .+.-++..+|..... . ...+     +.+.... .... ...+++.+.++.||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g-~a~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-G-VAAD-----VSHINTPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-e-eEch-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence            3469999999 9999999998732 444489999986621 0 0001     1111111 1111 123456788999999


Q ss_pred             EEEcCC--CCh-hhh-hcc--c----H---HHHhcCCCCcEEEEcCCCc
Q 016162          240 ISLHPV--LDK-TTY-HLI--N----K---ERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       240 V~l~lP--lt~-~t~-~li--~----~---~~l~~mk~gailIN~aRG~  275 (394)
                      |+++.-  ..+ .++ .++  |    .   +.+....+.+++++++..-
T Consensus        90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            988743  222 122 111  1    1   2333345889999987643

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=92.91  E-value=0.17  Score=51.77  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCchhh
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT  201 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~~~  201 (394)
                      .+|||.|||+||+.++|.+...++++|++ +|+....
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~  122 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDA  122 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCH
Confidence            49999999999999999852248999887 6655433

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.88  E-value=0.33  Score=48.81  Aligned_cols=98  Identities=27%  Similarity=0.192  Sum_probs=57.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH------------HHHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE------------KFVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~------------~~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|++++|.|+|+|.+|..+++.|+ ..|. ++..+|...-..  +.            ...+.-...+++.+. ..+..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~  102 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV  102 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence            5689999999999999999999985 5565 688888654110  00            000000011111111 11110


Q ss_pred             c--c--cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162          225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (394)
Q Consensus       225 ~--~--~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~  260 (394)
                      .  .  ..+..++++.+|+|+.|+- +.+++.+++..-.+
T Consensus       103 ~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~  141 (355)
T PRK05597        103 SVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR  141 (355)
T ss_pred             EEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            0  1  1234578899999998885 56777777664443

>PRK06349 homoserine dehydrogenase; Provisional

Probab=92.84  E-value=0.78  Score=47.28  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhc---------CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~---------~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (394)
                      -+|||+|+|.||+.+++.+.+.         .+.+|. ++|++..... .           .....  .....++++++.
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~-~-----------~~~~~--~~~~~d~~~ll~   69 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR-G-----------VDLPG--ILLTTDPEELVN   69 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc-C-----------CCCcc--cceeCCHHHHhh
Confidence            4799999999999998776321         245544 5577654310 0           00001  112468999985


Q ss_pred             --ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (394)
Q Consensus       236 --~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l  291 (394)
                        +.|+|+.+++......    +-..+.++.|.-+|...-+.+ -.-+.|.++.++..+
T Consensus        70 d~~iDvVve~tg~~~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         70 DPDIDIVVELMGGIEPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             CCCCCEEEECCCCchHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence              4799999987432111    112244556655554322222 233677777766554

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=92.77  E-value=0.63  Score=46.19  Aligned_cols=111  Identities=18%  Similarity=0.136  Sum_probs=59.2

Q ss_pred             CeEEEEec-ChHHHHHHHHHHh-cCCc-----EEEEEcCchhh--HHHHHHHhhhhhhhhcC-CCCccccccCCHHHHhc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~~G~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~  235 (394)
                      ++|+|||. |.+|..+|-.++. ++--     ++..+|.....  ......+     +.+.. ..........+..+.++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~~   77 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME-----LEDCAFPLLAEIVITDDPNVAFK   77 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh-----hhhccccccCceEEecCcHHHhC
Confidence            58999999 9999999987632 2322     79999985322  1111111     11110 00000111134457799


Q ss_pred             ccCEEEEcCCC--Ch-hhh-hcc--cH-------HHHhcCC-CCcEEEEcCCCcccCHHHHH
Q 016162          236 EADVISLHPVL--DK-TTY-HLI--NK-------ERLATMK-KEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       236 ~aDiV~l~lPl--t~-~t~-~li--~~-------~~l~~mk-~gailIN~aRG~~vde~aL~  283 (394)
                      +||+|+++.-.  .+ +|+ .++  |.       ..+.... |.+++|.++  .++|.-.-+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  137 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI  137 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence            99999988532  22 122 111  11       1233334 588999986  555554433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=92.74  E-value=0.49  Score=41.52  Aligned_cols=83  Identities=18%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..|++|++||+  + +++++++ +.-+.+++++|+++......             ...  . .....++++++||+|++
T Consensus         9 ~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~~-------------~~~--~-~~~~~~~~l~~aD~vii   68 (147)
T PF04016_consen    9 GPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGEE-------------PGD--V-PDEDAEEILPWADVVII   68 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS-------------CT---E-EGGGHHHHGGG-SEEEE
T ss_pred             cCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCCC-------------CCc--C-CHHHHHHHHccCCEEEE
Confidence            57899999996  1 2367777 57889999999988542110             000  1 22467889999999987


Q ss_pred             cCCCChhhhhccc---HHHHhcCCCCcEEEEc
Q 016162          243 HPVLDKTTYHLIN---KERLATMKKEAILVNC  271 (394)
Q Consensus       243 ~lPlt~~t~~li~---~~~l~~mk~gailIN~  271 (394)
                      .=      .-++|   ++.|++.+++..++=.
T Consensus        69 TG------sTlvN~Ti~~iL~~~~~~~~vil~   94 (147)
T PF04016_consen   69 TG------STLVNGTIDDILELARNAREVILY   94 (147)
T ss_dssp             EC------HHCCTTTHHHHHHHTTTSSEEEEE
T ss_pred             Ee------eeeecCCHHHHHHhCccCCeEEEE
Confidence            62      11233   4566666656555443

; PDB: 3L5O_B 3NPG_A.

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=92.69  E-value=0.29  Score=52.42  Aligned_cols=38  Identities=18%  Similarity=0.375  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ....|||||||-|..|+.+++.+ +.+|++|+++|+.+.
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLED   56 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence            47889999999999999999985 899999999998764

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.69  E-value=0.35  Score=46.77  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ..+.||++.|.| .|.||..+|+++ ...|++|+.+++...
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l-~~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLF-AKEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            468899999998 488999999998 467999999988653

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.67  E-value=0.77  Score=44.49  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      ++++.|+|.|..+++++-.| ...|+ +|++++|+.++
T Consensus       122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~  158 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT  158 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence            46899999999999999987 57787 69999998754

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.60  E-value=0.57  Score=46.45  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch--hhHHHHHHHhhhhhhhhcCCCCccccccCCHHH--HhcccC
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREAD  238 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aD  238 (394)
                      ..|++|.|+|.|.||...++.+ +..|++|++++++.  ..+.+ ..+       ..|...+.. ...++.+  .....|
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~-~~~-------~~Ga~~v~~-~~~~~~~~~~~~~~d  240 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKAD-IVE-------ELGATYVNS-SKTPVAEVKLVGEFD  240 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHH-HHH-------HcCCEEecC-CccchhhhhhcCCCC
Confidence            3588999999999999999875 88999999998742  12211 111       122211100 1112211  224578


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+-++.. +.   .+ .+.++.++++..++.++.
T Consensus       241 ~vid~~g~-~~---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         241 LIIEATGV-PP---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             EEEECcCC-HH---HH-HHHHHHccCCcEEEEEec
Confidence            88888752 11   12 456677888888877653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=92.56  E-value=0.39  Score=47.46  Aligned_cols=103  Identities=21%  Similarity=0.316  Sum_probs=59.6

Q ss_pred             eEEEEec-ChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc---cCCHHHHhcccCEEE
Q 016162          167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS  241 (394)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiV~  241 (394)
                      ||+|||. |.+|..+|-.|+. .+.-++..+|.....  ....+     +.+. ........   -.++.+.++.||+|+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D-----L~~~-~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD-----LSHI-PTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch-----hhcC-CcCceEEEecCCCchHHHcCCCCEEE
Confidence            6899999 9999999987643 444589999986621  11111     1111 11111211   124567899999999


Q ss_pred             EcCCC--Chh-hh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 016162          242 LHPVL--DKT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       242 l~lPl--t~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vde  279 (394)
                      ++.-.  .+. ++ .++  |.       +.+..-.|++++|+++.  ++|.
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence            88542  221 11 111  11       23344468999999865  4553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.55  E-value=1.1  Score=46.24  Aligned_cols=115  Identities=19%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l~  243 (394)
                      +-+++|+|+|.+|.++|+.| ...|.+|.++|........+.       ++..+ .++.... ..+ .+.+.++|+|+..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~s   75 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREF-PDVELRCGGFD-CELLVQASEIIIS   75 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhc-CCcEEEeCCCC-hHHhcCCCEEEEC
Confidence            45899999999999999987 799999999997653211110       11100 0111111 123 3456789988765


Q ss_pred             C--CC-Chhhh-------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          244 P--VL-DKTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       244 l--Pl-t~~t~-------~li~~-~~l-~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      -  |. +|+-.       .++.+ +.+ ..++...+-|--+.|+.--..-+...|+..
T Consensus        76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~  133 (448)
T PRK03803         76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA  133 (448)
T ss_pred             CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            3  32 22211       13433 233 334444566777889998888888888753

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.48  E-value=0.65  Score=45.53  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~  201 (394)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.+++..+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~  200 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPER  200 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            488999999999999999985 899998 9999887654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=92.35  E-value=2  Score=42.86  Aligned_cols=74  Identities=11%  Similarity=0.103  Sum_probs=46.7

Q ss_pred             c-CCCeEEEEecC-------hHHHHHHHHHHhcCCcEEEEEcC-chhhHHHHHH---HhhhhhhhhcCCCCccccccCCH
Q 016162          163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFV---TAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       163 l-~gktvGIIGlG-------~IG~~vA~~la~~~G~~V~~~d~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      + .|+||+|+|.|       ++..+.+..+ ..||++|.+..| ..-...+...   +++   +...|   ..+....++
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~  238 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQN---AAESG---GSLTVSHDI  238 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHH---HHHcC---CeEEEEcCH
Confidence            6 79999887654       6778888775 689999999988 3211111111   111   11112   223345789


Q ss_pred             HHHhcccCEEEEc
Q 016162          231 DEVLREADVISLH  243 (394)
Q Consensus       231 ~ell~~aDiV~l~  243 (394)
                      ++.++.+|+|..-
T Consensus       239 ~ea~~~aDvvy~~  251 (335)
T PRK04523        239 DSAYAGADVVYAK  251 (335)
T ss_pred             HHHhCCCCEEEec
Confidence            9999999999653

>PRK10206 putative oxidoreductase; Provisional

Probab=92.32  E-value=0.35  Score=48.26  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             eEEEEecChHHHH-HHHHHHhc-CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEE
Q 016162          167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (394)
Q Consensus       167 tvGIIGlG~IG~~-vA~~la~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (394)
                      ++||||+|.|++. .+..+... -++++. ++|++....  ++.+.|       +.    ...+.++++++.  +.|+|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~~----~~~~~~~~ell~~~~iD~V~   69 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------SH----IHFTSDLDEVLNDPDVKLVV   69 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------CC----CcccCCHHHHhcCCCCCEEE
Confidence            7999999998864 34433222 257775 588875432  222222       11    123568999996  579999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +|+|..
T Consensus        70 I~tp~~   75 (344)
T PRK10206         70 VCTHAD   75 (344)
T ss_pred             EeCCch
Confidence            999944

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=92.14  E-value=4.4  Score=39.75  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             cCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh-cCCCCccccccCCHHHHhcccCEE
Q 016162          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       163 l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++|+|+..+|=| +++.++.... ..+||+|...-|..-.-.+++.+    ..+. +...+..+....++++.++.||+|
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~----~a~~~a~~~g~~i~~t~d~~eAv~gADvv  225 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVE----KAKENAKESGGKITLTEDPEEAVKGADVV  225 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHH----HHHHHHHhcCCeEEEecCHHHHhCCCCEE
Confidence            899999999876 5777776663 58999999887654332222211    1111 011122233456899999999999


Q ss_pred             EEcCCCC--hhhh-----------hcccHHHHhcCCCCcEEEEc
Q 016162          241 SLHPVLD--KTTY-----------HLINKERLATMKKEAILVNC  271 (394)
Q Consensus       241 ~l~lPlt--~~t~-----------~li~~~~l~~mk~gailIN~  271 (394)
                      ..-+..+  .+..           .-+|++.++..+++++|.-|
T Consensus       226 yTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         226 YTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             EecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            6443321  2221           34677777777888888777

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=92.13  E-value=0.92  Score=45.32  Aligned_cols=96  Identities=16%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcc-ccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV~l  242 (394)
                      .|++|.|.|.|.+|...++. ++.+|.+|++.+....+..+ ..+       +.|..... ......+.++....|+|+-
T Consensus       183 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~vi~~~~~~~~~~~-~~~-------~~Ga~~vi~~~~~~~~~~~~~~~D~vid  253 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKI-GKAFGLKVTVISSSSNKEDE-AIN-------RLGADSFLVSTDPEKMKAAIGTMDYIID  253 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCcchhhh-HHH-------hCCCcEEEcCCCHHHHHhhcCCCCEEEE
Confidence            58899999999999999998 48999999888766543211 111       11211100 0000122233334677777


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++. .+.+   + ...+..++++..++.++.
T Consensus       254 ~~g-~~~~---~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        254 TVS-AVHA---L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             CCC-CHHH---H-HHHHHHhcCCcEEEEeCC
Confidence            664 2111   1 335666778877777753

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=92.13  E-value=0.27  Score=49.05  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ||||||-|..|+.+++.+ +.+|++|+++|+++.
T Consensus         1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~   33 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDAN   33 (352)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCC
Confidence            699999999999999985 789999999998753

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=92.06  E-value=0.85  Score=45.27  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHh------cCCcEEEEE--cCchhhHHHHHHHhhhhhhhhcC-------CCCcccccc
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVE------GFKMNLIYY--DLYQATRLEKFVTAYGQFLKANG-------EQPVTWKRA  227 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~------~~G~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  227 (394)
                      -.-++|+|||.|+=|+.+|+.++.      .|..+|..|  +-..... +.+..+..- -++.+       ..+......
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN-~~heN~KYlpg~~lP~NvvAv   96 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIIN-SRHENVKYLPGIKLPENVVAV   96 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhc-cccccccccCCccCCCCeEec
Confidence            345789999999999999998643      344445444  3222111 111111100 01111       122233345


Q ss_pred             CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       228 ~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +|+.+.+.+||+++..+|.+ -+.. |-++...+.|+++..|.+.-|=
T Consensus        97 ~dl~ea~~dADilvf~vPhQ-f~~~-ic~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   97 PDLVEAAKDADILVFVVPHQ-FIPR-ICEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             chHHHHhccCCEEEEeCChh-hHHH-HHHHHhcccCCCCeEEEeecce
Confidence            78999999999999999932 2223 3467778899999999987663

>PRK06128 oxidoreductase; Provisional

Probab=91.97  E-value=0.55  Score=45.50  Aligned_cols=36  Identities=25%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      .++||++.|.|. |.||+.+|+.| ...|++|++..+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l-~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAF-AREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHH-HHcCCEEEEEeCC
Confidence            478999999985 89999999998 4779999876554

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.93  E-value=0.18  Score=43.12  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=28.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~  199 (394)
                      .++|.|+|+|.+|..+|+.|+ ..|+ ++..+|+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence            579999999999999999985 5566 788888754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=91.87  E-value=0.34  Score=45.00  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=47.9

Q ss_pred             EEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEEEEcC
Q 016162          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       168 vGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      |.|+|. |.+|+.+++.|. .-+.+|.+.-|.......+.       ++..|..-+  .+....++.+.++.+|.|++++
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence            578885 999999999984 57889998888764432221       122232111  1112345677899999999999


Q ss_pred             CCC
Q 016162          245 VLD  247 (394)
Q Consensus       245 Plt  247 (394)
                      |..
T Consensus        73 ~~~   75 (233)
T PF05368_consen   73 PPS   75 (233)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            854

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=91.86  E-value=0.82  Score=45.71  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      .|.+|.|.|.|.+|...++.+ +..|+ +|++.+++..+
T Consensus       191 ~g~~VlV~G~G~vG~~a~~la-k~~G~~~Vi~~~~~~~r  228 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGA-VAAGASQVVAVDLNEDK  228 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEEcCCHHH
Confidence            478999999999999999874 89999 69999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08293 PTGR2 Prostaglandin reductase

Probab=91.84  E-value=1  Score=44.15  Aligned_cols=93  Identities=16%  Similarity=0.102  Sum_probs=56.2

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-----ccc
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  237 (394)
                      |.+|.|.|. |.+|...++. ++.+|+ +|++.+++.++... ..+.       .|..........++.+.+     ...
T Consensus       155 ~~~VlI~ga~g~vG~~aiql-Ak~~G~~~Vi~~~~s~~~~~~-~~~~-------lGa~~vi~~~~~~~~~~i~~~~~~gv  225 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQI-GRLLGCSRVVGICGSDEKCQL-LKSE-------LGFDAAINYKTDNVAERLRELCPEGV  225 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHH-HHHcCCCEEEEEcCCHHHHHH-HHHh-------cCCcEEEECCCCCHHHHHHHHCCCCc
Confidence            489999998 9999999987 489999 89998877644211 0011       222111111112333322     246


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|+-++.. +   . + ...+..++++..+|.++
T Consensus       226 d~vid~~g~-~---~-~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         226 DVYFDNVGG-E---I-S-DTVISQMNENSHIILCG  254 (345)
T ss_pred             eEEEECCCc-H---H-H-HHHHHHhccCCEEEEEe
Confidence            788776652 1   1 2 55677788888888775

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK06392 homoserine dehydrogenase; Provisional

Probab=91.83  E-value=0.8  Score=45.56  Aligned_cols=121  Identities=13%  Similarity=0.158  Sum_probs=62.4

Q ss_pred             eEEEEecChHHHHHHHHHHhc-------CCcEEEE-EcCchhhHHHHH--HHhhhhhhhhcCCCCcccc-ccCCHHHHh-
Q 016162          167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIY-YDLYQATRLEKF--VTAYGQFLKANGEQPVTWK-RASSMDEVL-  234 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~-------~G~~V~~-~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~ell-  234 (394)
                      +|+|+|+|++|+.+++.|.+.       ++.+|.+ .|++.....+.-  .+..-+.... +... ... ...++++++ 
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~-~~~~~~~~~~~ll~   79 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLE-EIDYEKIKFDEIFE   79 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-Cccc-cCCCCcCCHHHHhc
Confidence            799999999999999987432       5677654 454421100000  0000000111 1100 000 012566664 


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP  290 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v-de~aL~~aL~~g~  290 (394)
                      .++|+|+=|+|...+...-. .-..+.++.|.-+|-..-|.+. .-+.|.++.+++.
T Consensus        80 ~~~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g  135 (326)
T PRK06392         80 IKPDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR  135 (326)
T ss_pred             CCCCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence            46899999998532111111 2223446778888877766653 4456666665543

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=91.83  E-value=0.23  Score=41.24  Aligned_cols=98  Identities=12%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             ecChHHHHHHHHHHhc---CCcEEE-EEcCc--hhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEEc
Q 016162          172 GAGRIGSAYARMMVEG---FKMNLI-YYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (394)
Q Consensus       172 GlG~IG~~vA~~la~~---~G~~V~-~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~  243 (394)
                      |+|.||+.+++.+.+.   ++++|. ++|++  .........          .    ......++++++.  ..|+|+=|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF----------P----DEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH----------T----HSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc----------c----cccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999998432   267755 55666  111111100          0    0113468999988  99999988


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc---CHHHHHHHHHc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI---DEVALVEHLKQ  288 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v---de~aL~~aL~~  288 (394)
                      .+..+.+     +-....++.|.-+|-.+-|.+.   .-+.|.++.++
T Consensus        67 t~~~~~~-----~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~  109 (117)
T PF03447_consen   67 TSSEAVA-----EYYEKALERGKHVVTANKGALADEALYEELREAARK  109 (117)
T ss_dssp             SSCHHHH-----HHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred             CCchHHH-----HHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence            6633222     2234456788889988888877   33344444443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=91.68  E-value=0.37  Score=54.78  Aligned_cols=106  Identities=11%  Similarity=0.160  Sum_probs=65.8

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH-----H-----hhh----h--hhhhcCCCCccc--
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV-----T-----AYG----Q--FLKANGEQPVTW--  224 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~-----~-----~~~----~--~~~~~~~~~~~~--  224 (394)
                      +.-.++.|+|.|++|+..++.+ .++|++ . .++..-+.+.+..     +     .|+    .  ..++.+ .+-.+  
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~f~~  276 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKD-PSKQFDK  276 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccC-Cccccch
Confidence            4457899999999999999986 799888 3 3332221111000     0     000    0  000000 00000  


Q ss_pred             -------cccCC--HHHHhcccCEEEEcCCCChhhhhcccHH-HHhcCCCCc----EEEEcC
Q 016162          225 -------KRASS--MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS  272 (394)
Q Consensus       225 -------~~~~~--l~ell~~aDiV~l~lPlt~~t~~li~~~-~l~~mk~ga----ilIN~a  272 (394)
                             ..+.+  +++.+..+|+|+.|+-..+.+-.++..+ ..+.||+|+    +|+|++
T Consensus       277 ~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        277 ADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                   00001  4578899999999997777788899888 778899998    898876

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=91.60  E-value=1.4  Score=43.80  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=31.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~  201 (394)
                      .|++|.|.|.|.+|...++. ++.+|++ |++.+++..+
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~-ak~~G~~~Vi~~~~~~~~  213 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAG-AALAGASKIIAVDIDDRK  213 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence            47899999999999999998 4899985 9888887654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=91.54  E-value=1.1  Score=45.66  Aligned_cols=78  Identities=22%  Similarity=0.343  Sum_probs=48.7

Q ss_pred             ccCCCeEEEEec-----C---hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH
Q 016162          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (394)
Q Consensus       162 ~l~gktvGIIGl-----G---~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (394)
                      .+.|+||+|+|-     |   ++.++++..+ ..+|++|.+..|..-...++..+.--+..+..|   ..+....++++.
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea  259 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA  259 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            478999999985     5   5668888875 689999999988632111111110000011112   123335799999


Q ss_pred             hcccCEEEEc
Q 016162          234 LREADVISLH  243 (394)
Q Consensus       234 l~~aDiV~l~  243 (394)
                      ++.||+|..-
T Consensus       260 v~~aDvVYtd  269 (395)
T PRK07200        260 FKDADIVYPK  269 (395)
T ss_pred             hCCCCEEEEc
Confidence            9999999765

>PLN02214 cinnamoyl-CoA reductase

Probab=91.38  E-value=0.56  Score=46.54  Aligned_cols=83  Identities=12%  Similarity=-0.016  Sum_probs=48.9

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .++++++.|.|. |-||+.+++.| ..-|.+|++.+|...............................+++++++.+|+|
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            467899999997 99999999998 5779999999886543111100100000000000000111223567788899998


Q ss_pred             EEcCC
Q 016162          241 SLHPV  245 (394)
Q Consensus       241 ~l~lP  245 (394)
                      +-+..
T Consensus        86 ih~A~   90 (342)
T PLN02214         86 FHTAS   90 (342)
T ss_pred             EEecC
Confidence            77654

>PRK07877 hypothetical protein; Provisional

Probab=91.24  E-value=0.7  Score=50.72  Aligned_cols=98  Identities=18%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhh-----HH----H----HHHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQAT-----RL----E----KFVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~-----~~----~----~~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|++++|+|+|+| +|+.+|..|+ ..|  -+++.+|...-.     +.    .    .+.+.....+.+.+. ..+..
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999 8999999985 445  277777653211     00    0    000000011111110 11110


Q ss_pred             c----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       225 ~----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      .    ...++++++..+|+|+-|+. +-+++.++++.-...
T Consensus       181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence            0    11357888999999999996 678899998765543

>PRK13529 malate dehydrogenase; Provisional

Probab=91.18  E-value=5.2  Score=42.57  Aligned_cols=207  Identities=20%  Similarity=0.207  Sum_probs=124.5

Q ss_pred             hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (394)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (394)
                      +..|.+.|+--   .-+|--+++-+|+.+|-                     .|..|.+.++.|.|.|..|-.+|+.+..
T Consensus       261 r~~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~  316 (563)
T PRK13529        261 RDEICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVA  316 (563)
T ss_pred             ccCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence            34677777654   34577778888887772                     3457899999999999999999998753


Q ss_pred             c---CCc-------EEEEEcCch---hh--HHHHHHHhhhhhhhhcCCCCccc---cccCCHHHHhccc--CEEEEcCCC
Q 016162          187 G---FKM-------NLIYYDLYQ---AT--RLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVL  246 (394)
Q Consensus       187 ~---~G~-------~V~~~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a--DiV~l~lPl  246 (394)
                      +   .|.       +++.+|+..   ..  .+..+...|..   ..... ..|   ....+|.|+++.+  |+++=+-  
T Consensus       317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~---~~~~~-~~~~~~~~~~~L~e~v~~~kPtvLIG~S--  390 (563)
T PRK13529        317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYAR---KREEL-ADWDTEGDVISLLEVVRNVKPTVLIGVS--  390 (563)
T ss_pred             HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhh---hcccc-cccccccCCCCHHHHHhccCCCEEEEec--
Confidence            2   476       789988762   11  12333334421   11100 001   1125899999998  9887542  


Q ss_pred             ChhhhhcccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCCc-ceEEeeccCCCCCCC----CccccCCceE
Q 016162          247 DKTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNPM-FRVGLDVFEDEPYMK----PGLSEMKNAI  316 (394)
Q Consensus       247 t~~t~~li~~~~l~~mk~---gailIN~aRG~~vde~aL~~aL~--~g~l-~gaalDV~~~EP~~~----~~L~~~~nvi  316 (394)
                        ..-+.|.++.++.|.+   ..+|.=.|+...--|-.-.+|.+  +|+. .+.|. -|  .|...    ...-+..|++
T Consensus       391 --~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs-pf--~pv~~~G~~~~p~Q~NN~~  465 (563)
T PRK13529        391 --GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS-PF--APVEYNGKTYPIGQCNNAY  465 (563)
T ss_pred             --CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC-CC--CCeeeCCeEeccCcCccee
Confidence              2247899999999987   89999999866522322223333  4543 22222 11  11110    1123457999


Q ss_pred             EcCCCCCCcH-----HHHHHHHHHHHHHHHHHHcCCC
Q 016162          317 VVPHIASASK-----WTREGMATLAALNVLGKIKGYP  348 (394)
Q Consensus       317 lTPHia~~t~-----~~~~~~~~~~~~ni~~~l~g~~  348 (394)
                      +-|-++-...     .--+.|...+++.+-+...-+.
T Consensus       466 iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~  502 (563)
T PRK13529        466 IFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLAK  502 (563)
T ss_pred             ecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCcccc
Confidence            9998875322     1225566666676666554443

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.17  E-value=0.77  Score=44.72  Aligned_cols=87  Identities=14%  Similarity=0.091  Sum_probs=51.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .|+++.|+|.|.||...++.+ +.+|++ |.+.|+..... +.           ++...    ....-++.-...|+|+-
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~~rl-~~-----------a~~~~----~i~~~~~~~~g~Dvvid  206 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNPRRR-DG-----------ATGYE----VLDPEKDPRRDYRAIYD  206 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHH-Hh-----------hhhcc----ccChhhccCCCCCEEEE
Confidence            477899999999999999874 899997 55667654331 11           01100    01111111234688877


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |... +.+   + ...++.++++..++.++
T Consensus       207 ~~G~-~~~---~-~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       207 ASGD-PSL---I-DTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CCCC-HHH---H-HHHHHhhhcCcEEEEEe
Confidence            7652 111   1 34566778888887764

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.16  E-value=2  Score=44.21  Aligned_cols=115  Identities=19%  Similarity=0.195  Sum_probs=68.7

Q ss_pred             cCC-CeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc-ccCCHHHHhcccCE
Q 016162          163 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  239 (394)
Q Consensus       163 l~g-ktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  239 (394)
                      +.+ +++.|||+|.+|.+.++.|.+.-| ++|.++|........+       .++. +   +... ...+. +.+.++|+
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~-------~l~~-g---~~~~~g~~~~-~~~~~~d~   71 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQE-------QLPE-D---VELHSGGWNL-EWLLEADL   71 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHH-------Hhhc-C---CEEEeCCCCh-HHhccCCE
Confidence            445 789999999999999998854444 8999999754321111       0111 1   1111 11133 34578998


Q ss_pred             EEEcC--CC-Chhhh-------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          240 ISLHP--VL-DKTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       240 V~l~l--Pl-t~~t~-------~li~~-~~l-~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      |+...  |. +|+-.       .++.+ +.+ ..++...+-|--+.|+.--..-|...|+..
T Consensus        72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~  133 (438)
T PRK04663         72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAA  133 (438)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence            87653  32 23221       13333 233 334545666777889998888888888753

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.07  E-value=1.1  Score=44.26  Aligned_cols=150  Identities=13%  Similarity=0.107  Sum_probs=80.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHH-hhhhhhhhcCC-CCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-AYGQFLKANGE-QPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|.|+|.|.||+-++-+| ...|..|+..-|...  .+++.+ .+  .+..... ..... ....-.+.+..+|+|+++
T Consensus         1 mkI~IlGaGAvG~l~g~~L-~~~g~~V~~~~R~~~--~~~l~~~GL--~i~~~~~~~~~~~-~~~~~~~~~~~~Dlviv~   74 (307)
T COG1893           1 MKILILGAGAIGSLLGARL-AKAGHDVTLLVRSRR--LEALKKKGL--RIEDEGGNFTTPV-VAATDAEALGPADLVIVT   74 (307)
T ss_pred             CeEEEECCcHHHHHHHHHH-HhCCCeEEEEecHHH--HHHHHhCCe--EEecCCCcccccc-ccccChhhcCCCCEEEEE
Confidence            4899999999999999998 466777877776653  122211 11  0111111 00001 112223556789999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc--CCCCCCCCccccCCceEEcCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF--EDEPYMKPGLSEMKNAIVVPHI  321 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~--~~EP~~~~~L~~~~nvilTPHi  321 (394)
                      +- +-++...+ +......++.+.++-.-. ++=.++.+-+.....++. .|+..+  ..+....-.......+.+.+.-
T Consensus        75 vK-a~q~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~  150 (307)
T COG1893          75 VK-AYQLEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELR  150 (307)
T ss_pred             ec-cccHHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCC
Confidence            85 33444443 556667788877764433 344455555555544222 222222  2221111123345677777776


Q ss_pred             CCCc
Q 016162          322 ASAS  325 (394)
Q Consensus       322 a~~t  325 (394)
                      ++.+
T Consensus       151 ~~~~  154 (307)
T COG1893         151 GGRD  154 (307)
T ss_pred             CCch
Confidence            6554

>PRK07411 hypothetical protein; Validated

Probab=91.07  E-value=0.71  Score=47.07  Aligned_cols=101  Identities=19%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HHH------------HHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|+.++|+|||+|.+|..+|+.|+ ..|. ++..+|...-..  +-+            ..+...+.+++.+. ..+..
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~  112 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL  112 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            4689999999999999999999985 5555 678887653210  000            00000111111111 00100


Q ss_pred             c--cc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCC
Q 016162          225 K--RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (394)
Q Consensus       225 ~--~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk  263 (394)
                      .  ..  .+..+++.++|+|+.|+- +.+++.++++.-...-+
T Consensus       113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~  154 (390)
T PRK07411        113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNK  154 (390)
T ss_pred             EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence            0  11  234577899999988875 66788888766554433

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=91.07  E-value=1.9  Score=44.67  Aligned_cols=112  Identities=14%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhc--CC------cEEEEEcCchhhHHHHHHHhhhhhhhhcC-CCCccccccCCHHHHhc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~--~G------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~  235 (394)
                      -+|+|||. |.+|..+|-.|+.+  ||      -+++.+|..........++.     .+.- ..........+-.+.++
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL-----~daa~~~~~~v~i~~~~ye~~k  175 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMEL-----EDSLYPLLREVSIGIDPYEVFQ  175 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHH-----HHhhhhhcCceEEecCCHHHhC
Confidence            48999999 99999999876433  22      37889998776543332221     1110 00001111123457799


Q ss_pred             ccCEEEEcCC--CChh-hh--------hccc--HHHHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 016162          236 EADVISLHPV--LDKT-TY--------HLIN--KERLAT-MKKEAILVNCSRGPVIDEVALVE  284 (394)
Q Consensus       236 ~aDiV~l~lP--lt~~-t~--------~li~--~~~l~~-mk~gailIN~aRG~~vde~aL~~  284 (394)
                      +||+|+++.-  ..+. ++        .++.  .+.+.. ..+.+++|.++  .++|.-..+-
T Consensus       176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~  236 (444)
T PLN00112        176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALIC  236 (444)
T ss_pred             cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHH
Confidence            9999998853  2221 11        1121  123444 46788998886  4555555443

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=91.06  E-value=0.68  Score=45.98  Aligned_cols=74  Identities=19%  Similarity=0.158  Sum_probs=43.3

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCc-------EEEEEcCchhh--HHHHHHHhhhhhhhhcC-CCCccccccCCHHHHh
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVL  234 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell  234 (394)
                      .+|+|||. |.+|+.+|-.| ...|.       ++..+|.....  ......+     +.+.. ..........+..+.+
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l-~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~   77 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRI-ASGELFGKDQPVVLHLLDIPPAMKALEGVAME-----LEDCAFPLLAGVVATTDPEEAF   77 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCcccCCCccEEEEEecCCcccccchHHHH-----HhhccccccCCcEEecChHHHh
Confidence            38999998 99999999876 33343       79999985421  1111111     11111 0000011113456779


Q ss_pred             cccCEEEEcCC
Q 016162          235 READVISLHPV  245 (394)
Q Consensus       235 ~~aDiV~l~lP  245 (394)
                      ++||+|+++.-
T Consensus        78 ~daDvVVitAG   88 (323)
T TIGR01759        78 KDVDAALLVGA   88 (323)
T ss_pred             CCCCEEEEeCC
Confidence            99999998753

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.05  E-value=0.7  Score=47.48  Aligned_cols=114  Identities=19%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++.++++.|+|+|..|.+.++.| +..|.+|.++|..........       +. .|   +.........+.+...|+|+
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~g---~~~~~~~~~~~~~~~~d~vv   70 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-EN---VERHTGSLNDEWLLAADLIV   70 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-cC---CEEEeCCCCHHHhcCCCEEE
Confidence            35688999999999999999876 688999999997543211110       11 11   11111111224467788766


Q ss_pred             EcCCCChhhhh-----------cccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          242 LHPVLDKTTYH-----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       242 l~lPlt~~t~~-----------li~~-~~l~~-mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      ..- .-+....           ++.+ +.+.. ++...+-|--+.|+.--..-|...|+.
T Consensus        71 ~sp-gi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         71 ASP-GIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             ECC-CCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            543 2222111           2332 33333 343455577778998888888888875

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.05  E-value=1.1  Score=44.00  Aligned_cols=95  Identities=16%  Similarity=0.227  Sum_probs=55.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC-HHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~l  242 (394)
                      .|.++.|.|.|.+|+.+++.+ +.+|++|++.+++......  ...+       +..........+ ..+.-...|+|+-
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~~~--~~~~-------g~~~vi~~~~~~~~~~~~~~~d~v~~  238 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKKED--ALKL-------GADEFIATKDPEAMKKAAGSLDLIID  238 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHHHH--HHHc-------CCcEEecCcchhhhhhccCCceEEEE
Confidence            467999999999999999885 8999999999887643211  1111       111100000001 1122345677777


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |.+...     .-...++.++++..+++++.
T Consensus       239 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         239 TVSASH-----DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             CCCCcc-----hHHHHHHHhcCCCEEEEEec
Confidence            766321     12445666777777777654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=91.04  E-value=0.7  Score=45.69  Aligned_cols=77  Identities=21%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|+| .|-.|+++.+.| ... ..++.....+...                   .     ..+.++.+.++|+|++|
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL-~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFla   57 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERL-AGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILC   57 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHH-hcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEEC
Confidence            4799999 899999999998 444 3455443222110                   0     02334567889999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|... ...+. .+.   .+.|+.+||.|
T Consensus        58 lp~~~-s~~~~-~~~---~~~g~~VIDlS   81 (313)
T PRK11863         58 LPDDA-AREAV-ALI---DNPATRVIDAS   81 (313)
T ss_pred             CCHHH-HHHHH-HHH---HhCCCEEEECC
Confidence            99332 22221 222   24688999987

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=90.97  E-value=0.45  Score=46.94  Aligned_cols=78  Identities=23%  Similarity=0.319  Sum_probs=46.5

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-C--CccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-Q--PVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++|+|||.|.||+++|-+|.. .++-++..||.......-...+     +.+... .  ........+ .+-++.||+|+
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D-----L~~~~~~~~~~~~i~~~~~-y~~~~~aDiVv   74 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD-----LSHAAAPLGSDVKITGDGD-YEDLKGADIVV   74 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc-----hhhcchhccCceEEecCCC-hhhhcCCCEEE
Confidence            489999999999999987643 5666899999883321111111     111110 0  011111022 35689999999


Q ss_pred             EcC--CCChh
Q 016162          242 LHP--VLDKT  249 (394)
Q Consensus       242 l~l--Plt~~  249 (394)
                      ++.  |..|.
T Consensus        75 itAG~prKpG   84 (313)
T COG0039          75 ITAGVPRKPG   84 (313)
T ss_pred             EeCCCCCCCC
Confidence            987  66654

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.96  E-value=1.4  Score=42.81  Aligned_cols=94  Identities=20%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc-CCHHHHh-----cc
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVL-----RE  236 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell-----~~  236 (394)
                      .|.+|.|.| -|.+|...++. ++..|++|++.+++..+. + +       ++..|......... .++.+.+     ..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiql-Ak~~G~~Vi~~~~s~~~~-~-~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKV-A-Y-------LKKLGFDVAFNYKTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH-H-H-------HHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence            478999999 59999999998 489999999888775432 1 1       11222211100011 1233322     13


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-++. .+    .+ ...++.++++..+|.++.
T Consensus       208 vdvv~d~~G-~~----~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       208 YDCYFDNVG-GE----FS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             eEEEEECCC-HH----HH-HHHHHHhCcCcEEEEecc
Confidence            677777664 11    12 556778888888888764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=90.94  E-value=0.43  Score=36.81  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=29.5

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ++.|||-|.+|-++|..+ ..+|.+|+.+++...
T Consensus         1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence            588999999999999998 689999999987664

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=90.91  E-value=1.2  Score=46.09  Aligned_cols=126  Identities=15%  Similarity=0.261  Sum_probs=73.3

Q ss_pred             CeEEEEecChHHHH--HHHHHHh---cCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          166 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~--vA~~la~---~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .||.|||.|+. ..  +.+-+.+   .++ -+|..+|...... +. ...+...+.+.......+....|.++.+..||+
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCE
Confidence            48999999986 33  2222221   343 6899999987542 11 122222222222234455667899999999999


Q ss_pred             EEEcCCCCh-h----------hhhccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          240 ISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       240 V~l~lPlt~-~----------t~~li~----------------------~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                      |++.+--.. +          -+++++                      .+.+....|++++||.+..--+-+.++.+..
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~~  157 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLF  157 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHC
Confidence            987754221 1          122332                      1223334589999999987766666666554


Q ss_pred             HcCCcceE
Q 016162          287 KQNPMFRV  294 (394)
Q Consensus       287 ~~g~l~ga  294 (394)
                      ...++.|.
T Consensus       158 ~~~kviGl  165 (437)
T cd05298         158 PNARILNI  165 (437)
T ss_pred             CCCCEEEE
Confidence            33444443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=90.81  E-value=1.2  Score=44.31  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=25.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~  197 (394)
                      .+|||=|||+||+.+.|.+...-+.+|.+.+.
T Consensus         3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd   34 (331)
T PRK15425          3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND   34 (331)
T ss_pred             eEEEEEeeChHHHHHHHHHHHCCCCEEEEEec
Confidence            38999999999999999853344688887654

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.80  E-value=1.3  Score=44.18  Aligned_cols=96  Identities=17%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc-ccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l  242 (394)
                      .|.++.|.|.|.+|...++. ++..|.+|++.++...+... ..+.+       |....... ....+.++....|+|+-
T Consensus       180 ~g~~vlV~G~G~vG~~av~~-Ak~~G~~vi~~~~~~~~~~~-~~~~~-------Ga~~~i~~~~~~~~~~~~~~~D~vid  250 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSDKKREE-ALEHL-------GADDYLVSSDAAEMQEAADSLDYIID  250 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHH-HHHCCCeEEEEeCCHHHHHH-HHHhc-------CCcEEecCCChHHHHHhcCCCcEEEE
Confidence            57899999999999999988 48999999888876543221 11112       22110000 00112333345688888


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++... .+    -...+..++++..++.++.
T Consensus       251 ~~g~~-~~----~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        251 TVPVF-HP----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             CCCch-HH----HHHHHHHhccCCEEEEECC
Confidence            87622 11    1345677888888888764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.80  E-value=2  Score=41.84  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=67.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      |++++|||--.=-..+++.| ...|++|..|.-.....               +..  +.....+.++.++++|+|++-+
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~~~--~~~~~~~~~~~~~~~~~~i~p~   62 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------GFT--GAVKCELLELDLTTLDVVILPV   62 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------ccc--cceeecchhhhhccCCEEEECC
Confidence            67999999888888899998 68899887775321100               000  1222345566699999999999


Q ss_pred             CCChhhh----------hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          245 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       245 Plt~~t~----------~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      |.+.+..          --++++.+++|++++++ -++.    +..+|-++.++..+.
T Consensus        63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~~-~~G~----~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCTI-YVGI----SNPYLEQLAADAGVK  115 (287)
T ss_pred             ccccCCceEecccccCCccccHHHHHhcCCCCEE-EEec----CCHHHHHHHHHCCCe
Confidence            9666532          12568899999987653 3333    334455455544443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09189 uroporphyrinogen-III synthase; Validated

Probab=90.78  E-value=4  Score=38.28  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=34.0

Q ss_pred             eEEEEeCCCCch-HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCC
Q 016162           16 YRVVSTKPMPGT-RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT   71 (394)
Q Consensus        16 ~~vlv~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~   71 (394)
                      |+||||.+-+.. ...+.|++.|+++.....-+....+++..+.+.+.+|.||..+.
T Consensus         1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~   57 (240)
T PRK09189          1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSA   57 (240)
T ss_pred             CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECH
Confidence            579999988763 34578889998886654333221223333333334788876654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=90.75  E-value=0.61  Score=49.72  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=32.6

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      -.|+++.|.|. |.||+.+++.| ...|++|++++|+...
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek  116 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR  116 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            46789999986 99999999998 5779999999988654

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=90.74  E-value=2  Score=40.60  Aligned_cols=156  Identities=16%  Similarity=0.223  Sum_probs=87.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh---HHHHHHHhhhhhhhhcCCC----C-----ccccccCCHHHH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQ----P-----VTWKRASSMDEV  233 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~l~el  233 (394)
                      .+|+|+|-|.+|+.-|..+ .+-|++|..||.....   .++...++. ..++.+|..    .     .......++.|+
T Consensus         4 ~ki~ivgSgl~g~~WAmlF-As~GyqVqlYDI~e~Ql~~ALen~~Kel-~~Lee~g~lrGnlsa~eqla~is~t~~l~E~   81 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLF-ASSGYQVQLYDILEKQLQTALENVEKEL-RKLEEHGLLRGNLSADEQLALISGTTSLNEL   81 (313)
T ss_pred             cceeEeecccccchHHHHH-hccCceEEEeeccHHHHHHHHHHHHHHH-HHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence            4799999999999999988 4889999999987654   122211111 112222211    0     112235688999


Q ss_pred             hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCC
Q 016162          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (394)
Q Consensus       234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~  313 (394)
                      .+.|=+|==|+|-.-+-+.-+ -+.+...-....++..|+ +.+-..-+-+.|...+      .+.-.+|. ++|++ .|
T Consensus        82 vk~Ai~iQEcvpE~L~lkk~l-y~qlD~i~d~~tIlaSST-St~mpS~~s~gL~~k~------q~lvaHPv-NPPyf-iP  151 (313)
T KOG2305|consen   82 VKGAIHIQECVPEDLNLKKQL-YKQLDEIADPTTILASST-STFMPSKFSAGLINKE------QCLVAHPV-NPPYF-IP  151 (313)
T ss_pred             HhhhhhHHhhchHhhHHHHHH-HHHHHHhcCCceEEeccc-cccChHHHhhhhhhhh------heeEecCC-CCCcc-cc
Confidence            999888888887332222111 122333334444554444 3445555555555443      11223454 33433 35


Q ss_pred             ceEEcCCCCCCcHHHHHHHHH
Q 016162          314 NAIVVPHIASASKWTREGMAT  334 (394)
Q Consensus       314 nvilTPHia~~t~~~~~~~~~  334 (394)
                      =|=+-|| -+.++++.++...
T Consensus       152 LvElVPa-PwTsp~tVdrt~~  171 (313)
T KOG2305|consen  152 LVELVPA-PWTSPDTVDRTRA  171 (313)
T ss_pred             hheeccC-CCCChhHHHHHHH
Confidence            5667787 5777777666544

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.66  E-value=1.6  Score=42.62  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=32.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|.+|.|.|.|.+|+.+++.+ +.+|.+|++.++....
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~~  199 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSDK  199 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChHH
Confidence            578999999999999999984 8999999999886543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=90.61  E-value=1.9  Score=44.40  Aligned_cols=127  Identities=17%  Similarity=0.238  Sum_probs=72.7

Q ss_pred             CeEEEEecChHHHH-HHHHHHh---cCC-cEEEEEcCc-hhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~---~~G-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .||.|||.|..-.. +.+-+++   .++ -+|..||.. +.. ++. ...+...+.+.......+....++++.+..||+
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~r-l~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf   78 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEK-LEI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF   78 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHH-HHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            47999999997432 3333322   244 689999998 443 211 111111122222223445556799999999999


Q ss_pred             EEEcCCCChh-hh----------hccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          240 ISLHPVLDKT-TY----------HLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       240 V~l~lPlt~~-t~----------~li~----------------------~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                      |+++.-.... .+          ++++                      .+.+....|+++++|.+..--+-+.++.+..
T Consensus        79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~  158 (419)
T cd05296          79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT  158 (419)
T ss_pred             EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence            9877532221 11          1110                      1122333589999999987666667776655


Q ss_pred             HcCCcceEE
Q 016162          287 KQNPMFRVG  295 (394)
Q Consensus       287 ~~g~l~gaa  295 (394)
                       ..++.|.+
T Consensus       159 -~~rviGlc  166 (419)
T cd05296         159 -GDRVIGLC  166 (419)
T ss_pred             -cCCEEeeC
Confidence             44555554

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=90.48  E-value=0.97  Score=42.26  Aligned_cols=39  Identities=26%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+.||++.|.|. |.||+.+|+.| ...|++|++.+|+...
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l-~~~G~~V~~~~r~~~~   46 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAK   46 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999985 99999999998 4679999999987653

>PRK06172 short chain dehydrogenase; Provisional

Probab=90.47  E-value=0.64  Score=43.39  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+.||++.|.|. |.||+.+|++| ...|++|++.+|+...
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAF-AREGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999985 79999999998 5779999999998654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=90.47  E-value=1.2  Score=43.20  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=58.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH--HH--hcccC
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREAD  238 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~aD  238 (394)
                      .|.++.|+|.|.+|+.+++.+ +..|++ |++.+++.....  +...+       +..........+..  ..  -...|
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~--~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~vd  228 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKLE--LAKKL-------GATETVDPSREDPEAQKEDNPYGFD  228 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHHHh-------CCeEEecCCCCCHHHHHHhcCCCCc
Confidence            578999999999999999985 899998 888887765421  11111       11100000001111  11  24578


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +++-+.+...     ...+.+..++++..+++++...
T Consensus       229 ~v~~~~~~~~-----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         229 VVIEATGVPK-----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             EEEECCCChH-----HHHHHHHHHhcCCEEEEEecCC
Confidence            8888765211     2245567788888888887644

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=90.45  E-value=1.2  Score=45.48  Aligned_cols=90  Identities=8%  Similarity=-0.054  Sum_probs=53.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (394)
                      ...+-|+|+|.+|+.+++.| +..|.++++.|+.....  .         ...+. ........+.+.+    +++|+.|
T Consensus       240 k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~~--~---------~~~g~-~vI~GD~td~e~L~~AgI~~A~aV  306 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLEH--R---------LPDDA-DLIPGDSSDSAVLKKAGAARARAI  306 (393)
T ss_pred             CCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhhh--h---------ccCCC-cEEEeCCCCHHHHHhcCcccCCEE
Confidence            56799999999999999998 67788888888653211  1         11111 1111112233222    5689999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILV  269 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailI  269 (394)
                      +++++.+.++...+  ...+.+.|+..+|
T Consensus       307 I~~t~dD~~Nl~iv--L~ar~l~p~~kII  333 (393)
T PRK10537        307 LALRDNDADNAFVV--LAAKEMSSDVKTV  333 (393)
T ss_pred             EEcCCChHHHHHHH--HHHHHhCCCCcEE
Confidence            99888655544332  3344455554443

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=90.41  E-value=1.6  Score=43.25  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|.+|.|+|.|.||...++.+ +..|.+|++.+++..+
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence            478999999999999999984 8999999999887654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.40  E-value=1.2  Score=44.84  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=32.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|++|.|.|.|.+|...++. ++.+|++|++.++..+.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~~  214 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSEK  214 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChHH
Confidence            58899999999999999998 58999999998876543

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=90.38  E-value=1.5  Score=40.76  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ++.||++.|.|. |.||+.+|+.| ...|++|++.+|...
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~vi~~~r~~~   40 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGL-AEAGADIVGAGRSEP   40 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCchH
Confidence            378999999997 89999999998 477999999998653

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.35  E-value=1.7  Score=41.54  Aligned_cols=37  Identities=27%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~  201 (394)
                      .|.+|.|+|.|.||...++.+ +.+|.+ |++.+++..+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~r  157 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPDR  157 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            688999999999999999984 899996 8888876543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.33  E-value=2.5  Score=42.28  Aligned_cols=94  Identities=22%  Similarity=0.197  Sum_probs=56.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC-C----HHHHh--cc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-S----MDEVL--RE  236 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~ell--~~  236 (394)
                      +.++.|+|.|.||...+..+ +.+|+ +|++.|++..+. +.. +.+       +.......... +    ..++-  ..
T Consensus       169 ~~~V~V~GaGpIGLla~~~a-~~~Ga~~Viv~d~~~~Rl-~~A-~~~-------~g~~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALA-KLLGASVVIVVDRSPERL-ELA-KEA-------GGADVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHH-HHH-HHh-------CCCeEeecCccccHHHHHHHHhCCCC
Confidence            33999999999999988874 78886 677888877542 211 110       11111111111 1    11222  24


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+++-|.. ++.+    -...+...+++..++.++-
T Consensus       239 ~D~vie~~G-~~~~----~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         239 ADVVIEAVG-SPPA----LDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             CCEEEECCC-CHHH----HHHHHHHhcCCCEEEEEec
Confidence            899999887 3332    1456667788888887764

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=90.18  E-value=3.9  Score=35.30  Aligned_cols=65  Identities=23%  Similarity=0.296  Sum_probs=48.3

Q ss_pred             cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016162          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (394)
Q Consensus       227 ~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~  301 (394)
                      ..+.++++++||+|+-.-|.+        .+.++.|++|.++|-...-.  ....+++.|.+.++...++|....
T Consensus        55 ~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   55 VSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             ESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             ecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            446679999999998776633        66778899999999887644  578888899889999999887654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=90.12  E-value=5.7  Score=34.73  Aligned_cols=117  Identities=15%  Similarity=0.027  Sum_probs=76.9

Q ss_pred             CCceEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHh-cCCCcEEEecCC----ccccHHHHHH
Q 016162           13 NGKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALI-GDKCDGVIGQLT----EDWGETLFAA   81 (394)
Q Consensus        13 ~~~~~vlv~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~-~~~~d~ii~~~~----~~i~~~~l~~   81 (394)
                      ..++||++.+.-.+      .-....|++.|+++.....   ..+++|+...+ ..++|+|.+++.    ...-+.+.++
T Consensus        10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~---~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~   86 (143)
T COG2185          10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL---FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEA   86 (143)
T ss_pred             CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC---cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHH
Confidence            36788888654322      2234567788998865432   34788877655 556899887653    2334677788


Q ss_pred             hcccCCcEEEEcccCc-cccchhHHhhCCceEecCCCCCchhhHHHHHHHHH
Q 016162           82 LSRAGGKAFSNMAVGY-NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSL  132 (394)
Q Consensus        82 l~~l~~k~I~~~g~G~-d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L  132 (394)
                      |...|...|....-|+ --=|+...++.|+.=.-.|+-+...+++.++..+-
T Consensus        87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~  138 (143)
T COG2185          87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG  138 (143)
T ss_pred             HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence            8888877776444444 22256778899999999998877666666665543

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=90.12  E-value=1.2  Score=44.07  Aligned_cols=77  Identities=18%  Similarity=0.168  Sum_probs=49.4

Q ss_pred             eEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       167 tvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      +|+|+| -|-.|.++.|+|+.--.+++.........                        ...+.+++++++|++++|+|
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp   58 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP   58 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence            789997 59999999999843335566544322110                        01255677789999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .. ....+. .. +  .+.|+.+||.|
T Consensus        59 ~~-~s~~~~-~~-~--~~~g~~VIDlS   80 (310)
T TIGR01851        59 DD-AAREAV-SL-V--DNPNTCIIDAS   80 (310)
T ss_pred             HH-HHHHHH-HH-H--HhCCCEEEECC
Confidence            43 223222 22 1  24688899887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=90.08  E-value=1.3  Score=44.26  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=25.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhc--CCcEEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--~G~~V~~~d~  197 (394)
                      .+|||=|||+||+.+.|.+...  .+.+|.+.+.
T Consensus         2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind   35 (337)
T PRK07403          2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAIND   35 (337)
T ss_pred             eEEEEEccChHHHHHHHHHHhccCCCeEEEEecC
Confidence            3899999999999999975333  4678887765

>PLN02427 UDP-apiose/xylose synthase

Probab=90.02  E-value=0.55  Score=47.22  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=33.8

Q ss_pred             cccccCCCeEEEEe-cChHHHHHHHHHHhcC-CcEEEEEcCchh
Q 016162          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQA  200 (394)
Q Consensus       159 ~g~~l~gktvGIIG-lG~IG~~vA~~la~~~-G~~V~~~d~~~~  200 (394)
                      -|+.++.++|.|.| .|-||+.+++.| ..- |.+|+++|+...
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L-~~~~g~~V~~l~r~~~   50 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKL-MTETPHKVLALDVYND   50 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHH-HhcCCCEEEEEecCch
Confidence            45678889999998 599999999998 454 589999997654

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=90.00  E-value=2.2  Score=42.12  Aligned_cols=93  Identities=14%  Similarity=0.144  Sum_probs=52.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .|.+|.|+|.|.||...++.+++.+ +.+|++.|++..+. +.        ++..+..    ....++.+-. ..|+|+-
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~--------a~~~~~~----~~~~~~~~~~-g~d~viD  228 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DL--------FSFADET----YLIDDIPEDL-AVDHAFE  228 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HH--------HhhcCce----eehhhhhhcc-CCcEEEE
Confidence            4889999999999999888753235 46899999876542 11        1111110    0001111111 3688887


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ++... .+...+ ...+..++++..++.++
T Consensus       229 ~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         229 CVGGR-GSQSAI-NQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CCCCC-ccHHHH-HHHHHhCcCCcEEEEEe
Confidence            77521 011112 34566778887777664

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK05866 short chain dehydrogenase; Provisional

Probab=89.97  E-value=0.89  Score=44.04  Aligned_cols=41  Identities=20%  Similarity=0.155  Sum_probs=35.3

Q ss_pred             ccccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       160 g~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +..+.|+++.|.|. |.||+.+|+.| ..-|++|++.+|+...
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~L-a~~G~~Vi~~~R~~~~   76 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQF-ARRGATVVAVARREDL   76 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            46789999999986 99999999998 4679999999998643

>PRK08324 short chain dehydrogenase; Validated

Probab=89.95  E-value=0.89  Score=49.67  Aligned_cols=40  Identities=30%  Similarity=0.373  Sum_probs=35.0

Q ss_pred             cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ..+.|+++.|.| .|.||+.+|+.+ ...|++|++.+++...
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            457899999999 599999999998 5789999999998754

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=89.92  E-value=1.7  Score=46.02  Aligned_cols=103  Identities=19%  Similarity=0.145  Sum_probs=66.0

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|++|+++|=   |++..+.+..+ ..|| |+|....|..-...+.+.+    .+...|   ..+....++++.++.|
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~----~a~~~G---~~v~i~~d~~eav~~A  242 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVE----KMKKNG---FEVRIFSSIEEYLSQK  242 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHhccC
Confidence            478999999998   58898988876 6788 9999888754321122111    111112   2233457899999999


Q ss_pred             CEE--EE-------cCCCC-----hh--hhhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVI--SL-------HPVLD-----KT--TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV--~l-------~lPlt-----~~--t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+.  ..       .++..     .+  -...++++.++.+|+++++.-+.
T Consensus       243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            952  22       22211     01  12346888999999998887764

>PRK07326 short chain dehydrogenase; Provisional

Probab=89.78  E-value=0.82  Score=42.08  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=32.3

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +.++++.|+|. |.||+.+++.|+ ..|++|++.+|++..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~   42 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE   42 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence            56789999985 999999999984 679999999987654

>CHL00194 ycf39 Ycf39; Provisional

Probab=89.77  E-value=0.69  Score=45.23  Aligned_cols=70  Identities=16%  Similarity=0.105  Sum_probs=45.3

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l  242 (394)
                      ++|.|+| .|.||+.+++.| ..-|.+|.+.+|+......         +...+....  ......++.+.+..+|+|+.
T Consensus         1 MkIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~~---------l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~   70 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKASF---------LKEWGAELVYGDLSLPETLPPSFKGVTAIID   70 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhhh---------HhhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence            3789998 699999999998 5779999999987543210         011111000  01112356778999999887


Q ss_pred             cCC
Q 016162          243 HPV  245 (394)
Q Consensus       243 ~lP  245 (394)
                      +.+
T Consensus        71 ~~~   73 (317)
T CHL00194         71 AST   73 (317)
T ss_pred             CCC
Confidence            654

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=89.75  E-value=7.4  Score=41.39  Aligned_cols=204  Identities=15%  Similarity=0.117  Sum_probs=121.5

Q ss_pred             CCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh-
Q 016162          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE-  186 (394)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~-  186 (394)
                      ..|.+.|+--   .-+|-.+++-+|+.+|-                     .|..|.+.++.|.|.|..|-.+|+.+.. 
T Consensus       264 ~~i~~FnDDi---QGTaaV~lAgll~Alr~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~  319 (559)
T PTZ00317        264 NKYRCFNDDI---QGTGAVIAAGFLNALKL---------------------SGVPPEEQRIVFFGAGSAAIGVANNIADL  319 (559)
T ss_pred             cCCCEecccc---hhHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence            4577777554   34577788888888872                     2357899999999999999999998743 


Q ss_pred             --cCCc-------EEEEEcCchh------hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc--CEEEEcCCCChh
Q 016162          187 --GFKM-------NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKT  249 (394)
Q Consensus       187 --~~G~-------~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~lPlt~~  249 (394)
                        ..|.       +++.+|+..-      ..+..+...|..   ......  .....+|.|+++.+  |+++=+-    .
T Consensus       320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~---~~~~~~--~~~~~~L~e~v~~~KPtvLIG~S----~  390 (559)
T PTZ00317        320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFAR---TDISAE--DSSLKTLEDVVRFVKPTALLGLS----G  390 (559)
T ss_pred             HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhc---cccccc--cccCCCHHHHHhccCCCEEEEec----C
Confidence              2466       7888886521      002223333321   100000  00135899999999  9987542    1


Q ss_pred             hhhcccHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCCcceEEeeccCCCCCC-C---CccccCCceEEcC
Q 016162          250 TYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVP  319 (394)
Q Consensus       250 t~~li~~~~l~~mk---~gailIN~aRG~~---vde~aL~~aL~~g~l~gaalDV~~~EP~~-~---~~L~~~~nvilTP  319 (394)
                      ..+.|.++.++.|.   +..+|.=.|+...   ...++.+++ .+|+...|.=--|  .|.. +   ...-+..|+++-|
T Consensus       391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~-T~Grai~AtGspf--~pv~~~G~~~~p~Q~NN~~iFP  467 (559)
T PTZ00317        391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKW-TNGRAIVASGSPF--PPVTLNGKTIQPSQGNNLYVFP  467 (559)
T ss_pred             CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhh-ccCCEEEEECCCC--CCcccCCeeeccCcCcceeecc
Confidence            24689999999997   4899998888653   233333332 2455332221111  1211 0   1123457999999


Q ss_pred             CCCCCcH-----HHHHHHHHHHHHHHHHHHcCC
Q 016162          320 HIASASK-----WTREGMATLAALNVLGKIKGY  347 (394)
Q Consensus       320 Hia~~t~-----~~~~~~~~~~~~ni~~~l~g~  347 (394)
                      -++-...     .--+.|...+++.+-++..-+
T Consensus       468 GiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~  500 (559)
T PTZ00317        468 GVGLGCAIAQPSYIPDEMLIAAAASLATLVSEE  500 (559)
T ss_pred             chhhhhHhhcccCCCHHHHHHHHHHHHhhCCcc
Confidence            8764221     122556666666666655433

>PRK12742 oxidoreductase; Provisional

Probab=89.71  E-value=1.9  Score=39.64  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=30.2

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      .+.||++.|.|. |.||+.+|+.| ...|++|+...+.
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~   39 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG   39 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence            467999999985 89999999998 5789998876553

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=89.71  E-value=0.88  Score=47.99  Aligned_cols=136  Identities=15%  Similarity=0.169  Sum_probs=87.8

Q ss_pred             cccCCCeEEEEecChH-HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~I-G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      ..+.|+...++|--.| |..++..| +-.+.+|...-.                            ...++.|.+.++|+
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHS----------------------------KT~~lae~v~~ADI  208 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHS----------------------------KTRNLAEKVSRADI  208 (935)
T ss_pred             CccccceeEEEecccccCChHHHHH-HhcCceEEEecC----------------------------CCccHHHHhccCCE
Confidence            5689999999998876 88899887 677888876522                            12578899999999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP  319 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTP  319 (394)
                      |+.++-.    .+++-.+.   +|||+++|||+--.+-|..     =++|  .-..=||-.++-.   .    ---.+||
T Consensus       209 vIvAiG~----PefVKgdW---iKpGavVIDvGINyvpD~~-----Kksg--~klvGDVdfe~Ak---e----vas~ITP  267 (935)
T KOG4230|consen  209 VIVAIGQ----PEFVKGDW---IKPGAVVIDVGINYVPDPS-----KKSG--FKLVGDVDFESAK---E----VASFITP  267 (935)
T ss_pred             EEEEcCC----cceeeccc---ccCCcEEEEccccccCCCC-----Cccc--ceEeeecchHhhh---h----hhhcccc
Confidence            9999852    34444444   4899999999876554421     1222  1334476543321   1    1236888


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016162          320 HIASASKWTREGMATLAALNVLGKIKG  346 (394)
Q Consensus       320 Hia~~t~~~~~~~~~~~~~ni~~~l~g  346 (394)
                      -=||.-+=+..-+..-+.+...++..+
T Consensus       268 VPGGVGPMTVAMLmqNtveaAKR~r~e  294 (935)
T KOG4230|consen  268 VPGGVGPMTVAMLMQNTVEAAKRQREE  294 (935)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            777766544444444445555555544

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=89.64  E-value=0.52  Score=41.47  Aligned_cols=31  Identities=35%  Similarity=0.583  Sum_probs=24.8

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEE-EcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL  197 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~  197 (394)
                      +|||+|+|+||+.+++.+...-++++.+ .|+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            7999999999999999864455787765 554

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=89.63  E-value=1.8  Score=48.35  Aligned_cols=112  Identities=23%  Similarity=0.287  Sum_probs=70.0

Q ss_pred             CeEEEEecChHHHHH-HHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~v-A~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +++.|+|+|.+|.+. |+.| ...|++|.++|.......+.        ++..|.   .+..-.+ .+.+..+|+|+..-
T Consensus         5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~gi---~~~~g~~-~~~~~~~d~vV~Sp   71 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKGA---RFFLGHQ-EEHVPEDAVVVYSS   71 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCCC-HHHcCCCCEEEECC
Confidence            369999999999998 9987 79999999999765432221        222222   1111112 35677899998763


Q ss_pred             --C-CChhhh-------hcccHHH-Hhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          245 --V-LDKTTY-------HLINKER-LAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       245 --P-lt~~t~-------~li~~~~-l~~-mk~-gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                        | .+|+-.       .++++-. +.. ++. ..+-|--+.|+.--+.-+...|++..
T Consensus        72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g  130 (809)
T PRK14573         72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK  130 (809)
T ss_pred             CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence              2 222211       2344332 222 332 35667778899988888888888643

>PRK06114 short chain dehydrogenase; Provisional

Probab=89.63  E-value=0.75  Score=43.12  Aligned_cols=38  Identities=26%  Similarity=0.287  Sum_probs=32.4

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+.||++.|.| -|.||+.+|++| ...|++|++.+++..
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD   43 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            57899999997 568999999998 578999999988654

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=89.61  E-value=2.5  Score=41.59  Aligned_cols=95  Identities=19%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH----HHHhc--c
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E  236 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~  236 (394)
                      .|++|.|.|.|.+|...++.+ +..|+ +|++.+++.....  +...+       |..........++    .++..  .
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~~--~~~~~-------ga~~~i~~~~~~~~~~l~~~~~~~~  241 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARRE--LAEEL-------GATIVLDPTEVDVVAEVRKLTGGGG  241 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHh-------CCCEEECCCccCHHHHHHHHhCCCC
Confidence            578999999999999999985 89999 8888887665421  11111       2111100011122    22222  3


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-+... +.+    -...+..++++..++.++.
T Consensus       242 ~d~vid~~g~-~~~----~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         242 VDVSFDCAGV-QAT----LDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCEEEECCCC-HHH----HHHHHHhccCCCEEEEEcc
Confidence            7888877652 111    1455667788888888754

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.48  E-value=2.8  Score=43.28  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=68.0

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCC---HHHHhcccCEEE
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASS---MDEVLREADVIS  241 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---l~ell~~aDiV~  241 (394)
                      +|.|||+|..|.+.|+.| ...|.+|.++|+..........    +.+...|.   .+..  ..+   +.+.+.+.|.|+
T Consensus         2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~----~~l~~~gi---~~~~g~~~~~~~~~~~~~~~d~vv   73 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQ----QELEQEGI---TVKLGKPLELESFQPWLDQPDLVV   73 (459)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHH----HHHHHcCC---EEEECCccchhhhhHHhhcCCEEE
Confidence            689999999999999987 6889999999976543221100    01222221   1111  112   224678899987


Q ss_pred             EcCCCChhhh----------hcccHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          242 LHPVLDKTTY----------HLINKE-RL-ATMKK-EAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       242 l~lPlt~~t~----------~li~~~-~l-~~mk~-gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ....-.+...          .++.+- .+ ..+++ ..+-|--+.|+.--..-|...|+..
T Consensus        74 ~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~  134 (459)
T PRK02705         74 VSPGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAA  134 (459)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            7433222211          123322 22 33333 4566777889998888888888753

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=89.41  E-value=0.93  Score=44.77  Aligned_cols=99  Identities=23%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--c-CCHHHHhcccCE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADV  239 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~aDi  239 (394)
                      .+|+|||. |++|..+|-.+ ..-|  -++..+|.. ... ....+     +.+.. .......  . +++.+.++.||+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l-~~~~~~~elvLiDi~-~a~-g~alD-----L~~~~-~~~~i~~~~~~~~~y~~~~daDi   71 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLL-KLNPLVSELALYDIV-NTP-GVAAD-----LSHIN-TPAKVTGYLGPEELKKALKGADV   71 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCCcEEEEEecC-ccc-eeehH-----hHhCC-CcceEEEecCCCchHHhcCCCCE
Confidence            38999999 99999999886 3334  489999987 211 11111     11111 1111221  1 345677999999


Q ss_pred             EEEcCC--CCh-hhh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          240 ISLHPV--LDK-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       240 V~l~lP--lt~-~t~-~li--~~-------~~l~~mk~gailIN~aR  273 (394)
                      |+++.-  ..| +++ .++  |.       +.+....|.+++|+++.
T Consensus        72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN  118 (310)
T cd01337          72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN  118 (310)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            988753  333 222 122  11       23344468999999976

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=89.38  E-value=2  Score=44.27  Aligned_cols=127  Identities=10%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             CeEEEEecChHHHH--HHHHHHh---cC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          166 QTVGVIGAGRIGSA--YARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~--vA~~la~---~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+|.|||.|+. ..  +.+-+.+   .+ +-+|..||..+... +. +..+...+.+.......+....|.++.+..||+
T Consensus         1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADf   77 (425)
T cd05197           1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERL-DI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADF   77 (425)
T ss_pred             CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            37999999985 32  2332221   34 46899999887542 11 122222222222334455667899999999999


Q ss_pred             EEEcCCCCh-h----------hhhcccH----------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          240 ISLHPVLDK-T----------TYHLINK----------------------ERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       240 V~l~lPlt~-~----------t~~li~~----------------------~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                      |+..+--.. +          -+++++.                      +.+....|++++||.+..-=+-+.++.+..
T Consensus        78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~  157 (425)
T cd05197          78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYV  157 (425)
T ss_pred             EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhC
Confidence            988764322 1          1112111                      122223589999999987666666776664


Q ss_pred             HcCCcceEE
Q 016162          287 KQNPMFRVG  295 (394)
Q Consensus       287 ~~g~l~gaa  295 (394)
                      ...++.|.+
T Consensus       158 p~~rviG~c  166 (425)
T cd05197         158 PPEKAVGLC  166 (425)
T ss_pred             CCCcEEEEC
Confidence            233444444

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK05717 oxidoreductase; Validated

Probab=89.30  E-value=1.8  Score=40.44  Aligned_cols=38  Identities=24%  Similarity=0.200  Sum_probs=33.0

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .++||++.|.|. |.||+.+|+.| ...|++|+..+++..
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l-~~~g~~v~~~~~~~~   45 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWL-IAEGWQVVLADLDRE   45 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHH-HHcCCEEEEEcCCHH
Confidence            578999999985 89999999998 467999999988754

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=89.27  E-value=0.72  Score=45.83  Aligned_cols=103  Identities=22%  Similarity=0.227  Sum_probs=55.7

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcC-------CcEEEEEcCchhhH-HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGF-------KMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~-------G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      .+|+|+|. |.+|+.++..|. ..       +.++..+|+..... .....-   +..+.............++.+.++.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~-~~~~~~~~~~~el~L~D~~~~~~~~~g~~~---Dl~d~~~~~~~~~~~~~~~~~~l~~   78 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIA-KGDVFGPDQPVILHLLDIPPALKALEGVVM---ELQDCAFPLLKSVVATTDPEEAFKD   78 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHH-hCcccCCCCCcEEEEEEcCCccccccceee---ehhhccccccCCceecCCHHHHhCC
Confidence            37999999 999999998874 32       24899999854321 111000   0000000000011113567788999


Q ss_pred             cCEEEEcCCC--Ch-hhh-hcc--cH-------HHHhcC-CCCcEEEEcC
Q 016162          237 ADVISLHPVL--DK-TTY-HLI--NK-------ERLATM-KKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~lPl--t~-~t~-~li--~~-------~~l~~m-k~gailIN~a  272 (394)
                      ||+|+++.-.  .+ .++ .++  |.       ..+... ++++++|.++
T Consensus        79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (325)
T cd01336          79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG  128 (325)
T ss_pred             CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            9999877432  21 121 111  21       133334 5788888876

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=89.27  E-value=1.6  Score=43.05  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=56.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .|.+|.|.|.|.+|...++. ++..|++|++.+++..+. + .       +++.|.....    ...++.-...|+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~-~-~-------a~~~Ga~~vi----~~~~~~~~~~d~~i~~  230 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAAR-R-L-------ALALGAASAG----GAYDTPPEPLDAAILF  230 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHH-H-H-------HHHhCCceec----cccccCcccceEEEEC
Confidence            48899999999999988887 589999999998876542 1 1       1222321110    0001111246777666


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ... +++    -...++.++++..++.++.
T Consensus       231 ~~~-~~~----~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       231 APA-GGL----VPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             CCc-HHH----HHHHHHhhCCCcEEEEEec
Confidence            542 221    2456777888888887764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK08265 short chain dehydrogenase; Provisional

Probab=89.23  E-value=2.2  Score=40.18  Aligned_cols=38  Identities=26%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .++||++.|.|. |.||+.+|+.| ...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARAL-VAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            478999999986 99999999998 578999999998764

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=89.23  E-value=2.1  Score=41.92  Aligned_cols=95  Identities=16%  Similarity=0.174  Sum_probs=57.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc-CCHHH----Hhc-cc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDE----VLR-EA  237 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~e----ll~-~a  237 (394)
                      .|+++.|.|.|.+|+.+++.+ +.+|++|++.+++.....  +.+.+       |......... .++.+    +.. ..
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~~--~~~~~-------g~~~~i~~~~~~~~~~~~~~~~~~~~  234 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKLE--LAREL-------GAVATVNASEVEDVAAAVRDLTGGGA  234 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHHH--HHHHh-------CCCEEEccccchhHHHHHHHHhCCCC
Confidence            578999999999999999985 899999999887765421  11112       2111100010 12221    221 47


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+++-++.. ..+    -...+..++++..+|+++.
T Consensus       235 d~vi~~~g~-~~~----~~~~~~~l~~~g~~i~~g~  265 (345)
T cd08260         235 HVSVDALGI-PET----CRNSVASLRKRGRHVQVGL  265 (345)
T ss_pred             CEEEEcCCC-HHH----HHHHHHHhhcCCEEEEeCC
Confidence            888777642 111    2345677888888888765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=89.22  E-value=1.2  Score=43.78  Aligned_cols=73  Identities=21%  Similarity=0.319  Sum_probs=50.9

Q ss_pred             cCCCeEEEEe---cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       163 l~gktvGIIG---lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +.|++|+|+|   +|+.-++.++.| ..||++|..+.|..-...+...+.    ++..+   ..+......+|.+.++|+
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~----l~~~~---~~~~~~~~~e~~i~~~DV  227 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEE----LEEKG---GVVVEHDSDEEVIEEADV  227 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHH----HhhcC---ceEEEecchhhhhccCCE
Confidence            8999999999   899999999998 799999999988654322222121    22222   122234556669999999


Q ss_pred             EEEc
Q 016162          240 ISLH  243 (394)
Q Consensus       240 V~l~  243 (394)
                      +.+.
T Consensus       228 l~~l  231 (316)
T COG0540         228 LYML  231 (316)
T ss_pred             EEee
Confidence            9543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.15  E-value=1.4  Score=40.74  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +++|+++.|+|. |.||+.+++.+ ...|++|+..+++...
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~~   41 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQEK   41 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            377999999998 99999999998 5779999999987643

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=89.12  E-value=1.2  Score=44.52  Aligned_cols=31  Identities=26%  Similarity=0.426  Sum_probs=23.1

Q ss_pred             eEEEEecChHHHHHHHHHHhc-C--CcEEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEG-F--KMNLIYYDL  197 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~-~--G~~V~~~d~  197 (394)
                      +|||.|+|+||+.+.|.+... |  +.++++.+.
T Consensus         3 ~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind   36 (336)
T PRK13535          3 RVAINGFGRIGRNVLRALYESGRRAEITVVAINE   36 (336)
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence            799999999999999986321 2  456665543

>PLN02740 Alcohol dehydrogenase-like

Probab=89.02  E-value=2.2  Score=42.84  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|+...+
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~a-k~~G~~~Vi~~~~~~~r  235 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGA-RARGASKIIGVDINPEK  235 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCCcEEEEcCChHH
Confidence            3588999999999999999984 89999 69999887644

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=88.93  E-value=2.7  Score=40.78  Aligned_cols=95  Identities=18%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~l  242 (394)
                      .|.+|.|+|.|.+|+.+++.+ +.+|.+|++.+++......  ..       ..+..........+. ...-...|+++-
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~~~--~~-------~~g~~~~~~~~~~~~~~~~~~~~d~vi~  231 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKREL--AR-------KLGADEVVDSGAELDEQAAAGGADVILV  231 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HH-------HhCCcEEeccCCcchHHhccCCCCEEEE
Confidence            467999999999999988875 8999999999887654211  11       112111000000011 111235788887


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++.. ..    ...+.+..++++..+|+++.
T Consensus       232 ~~~~-~~----~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         232 TVVS-GA----AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             CCCc-HH----HHHHHHHhcccCCEEEEECC
Confidence            7642 11    22556778888889988864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK05442 malate dehydrogenase; Provisional

Probab=88.91  E-value=0.77  Score=45.65  Aligned_cols=109  Identities=17%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             CeEEEEec-ChHHHHHHHHHHh-cCCc-----EEEEEcCchhh--HHHHHHHhhhhhhhhcC-CCCccccccCCHHHHhc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~~G~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~  235 (394)
                      .+|+|||. |.+|..+|-.+.. ++--     ++..+|.....  ......+     +.+.. ..........+..+.++
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D-----l~~~~~~~~~~~~i~~~~y~~~~   79 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME-----LDDCAFPLLAGVVITDDPNVAFK   79 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh-----hhhhhhhhcCCcEEecChHHHhC
Confidence            48999998 9999999977532 2222     79999985421  1111111     11110 00000111234567799


Q ss_pred             ccCEEEEcCC--CCh-hhhh-cc--cHH-------HHhc-CCCCcEEEEcCCCcccCHHH
Q 016162          236 EADVISLHPV--LDK-TTYH-LI--NKE-------RLAT-MKKEAILVNCSRGPVIDEVA  281 (394)
Q Consensus       236 ~aDiV~l~lP--lt~-~t~~-li--~~~-------~l~~-mk~gailIN~aRG~~vde~a  281 (394)
                      +||+|+++.-  ..+ +|+- ++  |.+       .+.. .++.+++|.++  .++|.-.
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  137 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA  137 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence            9999998753  222 1221 11  111       2222 44788999887  4454444

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=88.86  E-value=3  Score=40.75  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=59.9

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHH--H------------HHHHhhhhhhhhcCC-CCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRL--E------------KFVTAYGQFLKANGE-QPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~--~------------~~~~~~~~~~~~~~~-~~~~~  224 (394)
                      ..|...+|.|+|+|.+|.++|+.|+ ..|. ++..+|...-...  .            ...+.-.+.+.+.+. ..+..
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~   93 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV   93 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence            4688999999999999999999985 5566 6888886642110  0            000000011122111 11111


Q ss_pred             cccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       225 ~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ......++.+.+.|+|+.+.. +.+++..+|+.-.+   .+.-+|.++
T Consensus        94 ~~~~~~~~~l~~fdvVV~~~~-~~~~~~~in~~c~~---~~ipfI~a~  137 (286)
T cd01491          94 STGPLTTDELLKFQVVVLTDA-SLEDQLKINEFCHS---PGIKFISAD  137 (286)
T ss_pred             EeccCCHHHHhcCCEEEEecC-CHHHHHHHHHHHHH---cCCEEEEEe
Confidence            111113567889998887764 56666666654332   344555554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.85  E-value=3.3  Score=41.14  Aligned_cols=37  Identities=19%  Similarity=0.175  Sum_probs=32.0

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|.+|.|.|. |.+|...++. ++.+|++|++.+++..+
T Consensus       158 ~g~~VlV~GaaG~vG~~aiql-Ak~~G~~Vi~~~~~~~k  195 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQL-AKLHGCYVVGSAGSSQK  195 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEcCCHHH
Confidence            5889999999 9999999998 48999999998876644

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=88.80  E-value=2.1  Score=42.80  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=23.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d  196 (394)
                      .+|||.|+|+||+.+.+.+...-++++.+..
T Consensus         3 ikigInG~GRiGr~v~r~~~~~~~~~ivain   33 (334)
T PRK08955          3 IKVGINGFGRIGRLALRAAWDWPELEFVQIN   33 (334)
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCcEEEEec
Confidence            4899999999999999986333457765544

>PRK06196 oxidoreductase; Provisional

Probab=88.74  E-value=1.9  Score=42.03  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+.||++.|.|. |.||+.+|+.| ...|++|++.+|+...
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L-~~~G~~Vv~~~R~~~~   62 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRAL-AQAGAHVIVPARRPDV   62 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            578999999987 88999999998 5779999999987654

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=88.71  E-value=1.7  Score=44.31  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cC-CcEEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GF-KMNLIYYDL  197 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~-G~~V~~~d~  197 (394)
                      .+|||.|+|+||+.+.|.+.. .+ ..+|.+.+.
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd   94 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND   94 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence            489999999999999998632 22 457776553

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.71  E-value=2.4  Score=42.21  Aligned_cols=37  Identities=32%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      .|.+|.|.|.|.+|...++.+ +.+|+ +|++.++....
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~a-k~~G~~~vi~~~~~~~~  224 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGA-RIRGASRIIGVDLNPSK  224 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            588999999999999999984 89999 79999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK07825 short chain dehydrogenase; Provisional

Probab=88.64  E-value=1.9  Score=40.81  Aligned_cols=39  Identities=31%  Similarity=0.399  Sum_probs=33.0

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ++.|+++.|.|. |.||+.+++.| ...|++|++.+|+...
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l-~~~G~~v~~~~r~~~~   41 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARAL-AALGARVAIGDLDEAL   41 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            467899999986 89999999998 4779999999987644

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=88.63  E-value=1.9  Score=43.17  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=25.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~  197 (394)
                      .+|||=|||+||+.+.|.+...-+.+|.+.+.
T Consensus         3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd   34 (343)
T PRK07729          3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINA   34 (343)
T ss_pred             eEEEEECcChHHHHHHHHHhhcCCcEEEEecC
Confidence            38999999999999999853233578887754

>PRK08628 short chain dehydrogenase; Provisional

Probab=88.51  E-value=0.96  Score=42.33  Aligned_cols=40  Identities=23%  Similarity=0.154  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .++.|+++.|+| .|.||+.+|+.| ...|++|++.++....
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l-~~~G~~v~~~~r~~~~   43 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRL-AEEGAIPVIFGRSAPD   43 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHH-HHcCCcEEEEcCChhh
Confidence            358899999998 578999999998 5789999988887644

>PRK12828 short chain dehydrogenase; Provisional

Probab=88.45  E-value=3.3  Score=37.78  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+.||++.|+|- |.||+.+++.++ .-|++|++.+|+..+
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~-~~G~~v~~~~r~~~~   43 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLA-ARGARVALIGRGAAP   43 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHH-HCCCeEEEEeCChHh
Confidence            477999999985 999999999984 669999999997654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.45  E-value=2.3  Score=43.22  Aligned_cols=94  Identities=19%  Similarity=0.373  Sum_probs=64.9

Q ss_pred             cccccCCCeEEEEec---ChH-------HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC
Q 016162          159 VGNLLKGQTVGVIGA---GRI-------GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (394)
Q Consensus       159 ~g~~l~gktvGIIGl---G~I-------G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (394)
                      .++.+.|.+|.|+|+   |++       .-.+.+.+ ...|.+|.+|||+......++ .         +   ... ...
T Consensus       316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l-~~~g~~v~~~DP~v~~~~~~~-~---------~---~~~-~~~  380 (436)
T COG0677         316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELL-EEWGGEVLVYDPYVKELPTRE-D---------G---EGV-TLA  380 (436)
T ss_pred             cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHH-HHhCCeEEEECCCCCcchhhh-h---------c---ccc-chh
Confidence            356789999999998   333       34677777 688999999999986522110 0         0   001 135


Q ss_pred             CHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       229 ~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      ++++.+..+|+|++.+-  .+...-++.+.+..+  ..+++|+
T Consensus       381 ~~e~al~~~D~vVi~tD--H~~fk~id~~~i~~~--~~vivDt  419 (436)
T COG0677         381 ILEEALKDADAVVIATD--HSEFKEIDYEAIGKE--AKVIVDT  419 (436)
T ss_pred             hHHHHhccCCEEEEEec--cHHhhcCCHHHhccC--CcEEEEC
Confidence            78999999999999874  233335777777655  6677775

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=88.37  E-value=8.6  Score=41.09  Aligned_cols=201  Identities=18%  Similarity=0.158  Sum_probs=122.7

Q ss_pred             hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (394)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (394)
                      +..|.+.|+--   .-+|-.+++-+|+.+|-                     .|..|.+.++.|+|.|..|-.+|+.+..
T Consensus       287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgigia~ll~~  342 (581)
T PLN03129        287 RTTHLCFNDDI---QGTAAVALAGLLAALRA---------------------TGGDLADQRILFAGAGEAGTGIAELIAL  342 (581)
T ss_pred             ccCCCEecccc---chHHHHHHHHHHHHHHH---------------------hCCchhhceEEEECCCHHHHHHHHHHHH
Confidence            34677777654   34577788888887772                     2457899999999999999999998743


Q ss_pred             c----CCc-------EEEEEcCchhh-----H-HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEEEcCCCC
Q 016162          187 G----FKM-------NLIYYDLYQAT-----R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLD  247 (394)
Q Consensus       187 ~----~G~-------~V~~~d~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lPlt  247 (394)
                      .    .|.       +++.+|+..--     . +..+...|..   ..       ....+|.|+++.  .|+++=+--  
T Consensus       343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~---~~-------~~~~~L~e~v~~vkptvLIG~S~--  410 (581)
T PLN03129        343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAH---DH-------EPGASLLEAVKAIKPTVLIGLSG--  410 (581)
T ss_pred             HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHh---hc-------ccCCCHHHHHhccCCCEEEEecC--
Confidence            2    366       78888865311     1 2233333321   10       123589999999  899875431  


Q ss_pred             hhhhhcccHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCCcceEEeeccCCCCCC-C---CccccCCceEE
Q 016162          248 KTTYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIV  317 (394)
Q Consensus       248 ~~t~~li~~~~l~~mk---~gailIN~aRG~~---vde~aL~~aL~~g~l~gaalDV~~~EP~~-~---~~L~~~~nvil  317 (394)
                        .-+.|.++.++.|.   +..+|.=.|....   ...++.+++ .+|+...|.=--|  .|.. +   ...-+..|+++
T Consensus       411 --~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtGSPf--~pv~~~Gr~~~p~Q~NN~~i  485 (581)
T PLN03129        411 --VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASGSPF--DPVEYNGKTFHPGQANNAYI  485 (581)
T ss_pred             --CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeCCCC--CCeeeCCeeecCccccceee
Confidence              13789999999995   8899998887542   233333333 3355333321111  1110 0   11234579999


Q ss_pred             cCCCCCCcH-----HHHHHHHHHHHHHHHHHHcCCC
Q 016162          318 VPHIASASK-----WTREGMATLAALNVLGKIKGYP  348 (394)
Q Consensus       318 TPHia~~t~-----~~~~~~~~~~~~ni~~~l~g~~  348 (394)
                      -|-|+-...     .--+.|...+++.+-.+..-+.
T Consensus       486 FPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~~  521 (581)
T PLN03129        486 FPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEE  521 (581)
T ss_pred             ccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCccc
Confidence            998875322     1225566666777766554433

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.35  E-value=3.4  Score=40.51  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=31.8

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|.+|.|.|. |.+|+.+++. ++.+|++|++.+++..+
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiql-Ak~~G~~Vi~~~~~~~~  188 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQL-AKLKGCYVVGSAGSDEK  188 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHHH
Confidence            5789999998 9999999998 48999999988876544

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=88.24  E-value=0.99  Score=43.23  Aligned_cols=113  Identities=15%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (394)
Q Consensus       177 G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~  256 (394)
                      |..+|-.+| ..|.+|+..||+..-..++.    ++...++|.     ....+=.+..+.+.+.++.+|....|-++. .
T Consensus        33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~----w~~vedAGV-----~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-r  101 (340)
T COG4007          33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEH----WKRVEDAGV-----EVVSDDAEAAEHGEIHVLFTPFGKATFGIA-R  101 (340)
T ss_pred             chHHHHHHH-HcCCcEEeecCCccccCHHH----HHHHHhcCc-----EEecCchhhhhcceEEEEecccchhhHHHH-H
Confidence            677887764 66999999999876533332    223344443     223344577899999999999988887765 7


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce--EEeeccCCCCC
Q 016162          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR--VGLDVFEDEPY  304 (394)
Q Consensus       257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~g--aalDV~~~EP~  304 (394)
                      +.+..++.|+++.|+++-+.   -.|+.-|+ |.++-  -.+-|.+-.|.
T Consensus       102 ei~~hvpEgAVicnTCT~sp---~vLy~~LE-~~Lr~kR~dVGvssmHPA  147 (340)
T COG4007         102 EILEHVPEGAVICNTCTVSP---VVLYYSLE-GELRTKREDVGVSSMHPA  147 (340)
T ss_pred             HHHhhCcCCcEecccccCch---hHHHHHhh-hhhcCchhhcCccccCCC
Confidence            88999999999999998655   45777764 33332  23334556664

>PRK08862 short chain dehydrogenase; Provisional

Probab=88.21  E-value=1.9  Score=40.04  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +++||++.|.|.+. ||+++|+.| ...|++|+..+|+...
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   41 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHF-ARLGATLILCDQDQSA   41 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            47899999998776 999999998 5789999999987654

>PRK08328 hypothetical protein; Provisional

Probab=88.20  E-value=0.64  Score=43.80  Aligned_cols=107  Identities=23%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HH-HH-----------HHhh-hhhhhhcCCCCccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-KF-----------VTAY-GQFLKANGEQPVTW  224 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~-~~-----------~~~~-~~~~~~~~~~~~~~  224 (394)
                      ..|++++|.|+|.|.+|.++|+.|+ ..|. +++.+|...-..  +- ++           +.+. ...+++.+. .+..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np-~v~v  100 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS-DIKI  100 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC-CCEE
Confidence            4689999999999999999999985 5666 688888553210  00 00           0000 000111110 0111


Q ss_pred             c------ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          225 K------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       225 ~------~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .      ...+++++++.+|+|+.|+- +.+++.++++--.   +.+.-+|+.+-
T Consensus       101 ~~~~~~~~~~~~~~~l~~~D~Vid~~d-~~~~r~~l~~~~~---~~~ip~i~g~~  151 (231)
T PRK08328        101 ETFVGRLSEENIDEVLKGVDVIVDCLD-NFETRYLLDDYAH---KKGIPLVHGAV  151 (231)
T ss_pred             EEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHH---HcCCCEEEEee
Confidence            0      11245677889999998886 4677777764332   23445666543

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=88.16  E-value=3  Score=39.79  Aligned_cols=37  Identities=35%  Similarity=0.460  Sum_probs=31.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~  201 (394)
                      .|.++.|.|.|.+|+.+++.+ +..|++ |++.++....
T Consensus       129 ~~~~vlI~g~g~vg~~~~~la-~~~g~~~v~~~~~~~~~  166 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQLA-AAAGARRVIAIDRRPAR  166 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHH
Confidence            578999999999999999984 899999 8888776543

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=87.89  E-value=3.9  Score=41.67  Aligned_cols=112  Identities=16%  Similarity=0.067  Sum_probs=57.7

Q ss_pred             CeEEEEec-ChHHHHHHHHHHh-c-CCc----EEEEE--cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVE-G-FKM----NLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~-~G~----~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      .+|+|||. |++|..+|-.++. + ++.    .++.+  |...........+-. +   .............+-.+.+++
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~-d---~a~~~~~~v~i~~~~y~~~kd  120 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELE-D---SLYPLLREVSIGIDPYEVFED  120 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHH-H---hhhhhcCceEEecCCHHHhCC
Confidence            58999999 9999999987643 2 231    34444  766554332222211 1   000000011111233577999


Q ss_pred             cCEEEEcCC--CChh-hhh--------ccc--HHHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 016162          237 ADVISLHPV--LDKT-TYH--------LIN--KERLAT-MKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       237 aDiV~l~lP--lt~~-t~~--------li~--~~~l~~-mk~gailIN~aRG~~vde~aL~  283 (394)
                      ||+|+++.-  ..+. ++.        ++.  ...+.. -+|++++|.++  .++|.-..+
T Consensus       121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v  179 (387)
T TIGR01757       121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALI  179 (387)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHH
Confidence            999998743  2221 221        111  112222 45888888876  445444433

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=87.89  E-value=2.8  Score=47.81  Aligned_cols=94  Identities=24%  Similarity=0.347  Sum_probs=61.1

Q ss_pred             CCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh-----------HHH-HHHHhhhhhhhhcCC
Q 016162          152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-----------RLE-KFVTAYGQFLKANGE  219 (394)
Q Consensus       152 ~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~-----------~~~-~~~~~~~~~~~~~~~  219 (394)
                      +|....+. ..=.|++|+|||-|.-|-..|..| -..|..|++|.|....           .+. ..++.-.+.+...|.
T Consensus      1773 gwm~p~pp-~~rtg~~vaiigsgpaglaaadql-nk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1773 GWMKPCPP-AFRTGKRVAIIGSGPAGLAAADQL-NKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGI 1850 (2142)
T ss_pred             cCCccCCc-ccccCcEEEEEccCchhhhHHHHH-hhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCc
Confidence            48755433 345799999999999999999997 6889999999876431           011 111111222333342


Q ss_pred             CCc---cccccCCHHHHhcccCEEEEcCCCC
Q 016162          220 QPV---TWKRASSMDEVLREADVISLHPVLD  247 (394)
Q Consensus       220 ~~~---~~~~~~~l~ell~~aDiV~l~lPlt  247 (394)
                      .-+   ......+++++...-|.|++++-.|
T Consensus      1851 ~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1851 RFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             eEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence            110   1112468999999999999987654

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=87.84  E-value=3.4  Score=41.17  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=32.4

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      -.|.+|.|+|.|.+|...++. ++.+|+ +|++.++...+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~  221 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDK  221 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence            358899999999999999997 589999 79999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK08589 short chain dehydrogenase; Validated

Probab=87.80  E-value=2.4  Score=40.27  Aligned_cols=36  Identities=22%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      .+.||++.|.|. |.||+++|+.| ...|++|++.+++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l-~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIAL-AQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCc
Confidence            478999999987 88999999998 4779999999987

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=87.77  E-value=3.1  Score=38.33  Aligned_cols=39  Identities=28%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+.++++.|.| .|.+|+.+++.| ...|++|++.+|+...
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l-~~~g~~V~~~~r~~~~   42 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRL-AADGAEVIVVDICGDD   42 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            46789999998 799999999998 5679999999988643

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.76  E-value=2.8  Score=41.86  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=32.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      .|.+|.|.|.|.||...++. ++.+|. +|++.+++..+
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~-Ak~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQG-ARMAKASRIIAIDINPAK  222 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence            47899999999999999998 489999 79999887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=87.75  E-value=1.2  Score=43.71  Aligned_cols=97  Identities=16%  Similarity=0.273  Sum_probs=54.7

Q ss_pred             EEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-C--CCccccccCCHHHHhcccCEEEEcCC
Q 016162          170 VIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-E--QPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      |||.|.+|..+|..++. .+.-++..+|...........+     +.+.. .  ......  .+-.+.+++||+|+++.-
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D-----l~~~~~~~~~~~~i~--~~~~~~~~daDivVitag   73 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD-----LQHAASFLPTPKKIR--SGDYSDCKDADLVVITAG   73 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH-----HHHhhcccCCCeEEe--cCCHHHHCCCCEEEECCC
Confidence            69999999999987632 3444899999866432222222     11111 0  111111  133467999999998753


Q ss_pred             C--Chh-hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016162          246 L--DKT-TY--------HLIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       246 l--t~~-t~--------~li~--~~~l~~mk~gailIN~aR  273 (394)
                      .  .|. ++        .++.  .+.+....|.+++|+++.
T Consensus        74 ~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  114 (299)
T TIGR01771        74 APQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN  114 (299)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            2  221 22        1121  123444578899999863

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=87.73  E-value=0.92  Score=43.38  Aligned_cols=71  Identities=13%  Similarity=0.200  Sum_probs=44.9

Q ss_pred             eEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cc-cC
Q 016162          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE-AD  238 (394)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~-aD  238 (394)
                      +|.|+|. |.+|+.+++.| ..-|.+|.+..|++......          ........+....++.+.+      .. +|
T Consensus         1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~~----------~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d   69 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAGP----------NEKHVKFDWLDEDTWDNPFSSDDGMEPEIS   69 (285)
T ss_pred             CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccCC----------CCccccccCCCHHHHHHHHhcccCcCCcee
Confidence            4678876 99999999998 56799999999886532100          0000111122234556666      45 89


Q ss_pred             EEEEcCCCCh
Q 016162          239 VISLHPVLDK  248 (394)
Q Consensus       239 iV~l~lPlt~  248 (394)
                      .|+++.|..+
T Consensus        70 ~v~~~~~~~~   79 (285)
T TIGR03649        70 AVYLVAPPIP   79 (285)
T ss_pred             EEEEeCCCCC
Confidence            9998887543

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06194 hypothetical protein; Provisional

Probab=87.69  E-value=1.6  Score=41.49  Aligned_cols=39  Identities=28%  Similarity=0.443  Sum_probs=32.7

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ++.++++.|.|. |.||+.+|+.| ...|++|++.|++...
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l-~~~G~~V~~~~r~~~~   42 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIG-AALGMKLVLADVQQDA   42 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEeCChHH
Confidence            467899999985 89999999998 5779999999987543

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.68  E-value=2.8  Score=39.51  Aligned_cols=37  Identities=24%  Similarity=0.216  Sum_probs=32.0

Q ss_pred             ccCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .+.||++.|.|.+   .||+++|+.++ ..|++|+..+++.
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la-~~G~~v~l~~r~~   46 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFR-ALGAELAVTYLND   46 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCh
Confidence            5789999999986   69999999984 7799999888764

>PRK12747 short chain dehydrogenase; Provisional

Probab=87.66  E-value=2.8  Score=39.08  Aligned_cols=34  Identities=26%  Similarity=0.196  Sum_probs=28.2

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcC
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL  197 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~  197 (394)
                      +.||++.|.| .|.||+.+|+.| ...|++|++.++
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~   36 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYG   36 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcC
Confidence            4688999997 679999999998 578999988653

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=87.65  E-value=1.3  Score=45.39  Aligned_cols=40  Identities=28%  Similarity=0.369  Sum_probs=34.1

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ..++||++.|.|. |.||+++|+.+ ...|++|++.+++...
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~  214 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDK  214 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            3578999999987 89999999998 5779999999987643

>PRK06841 short chain dehydrogenase; Provisional

Probab=87.64  E-value=2.9  Score=38.93  Aligned_cols=38  Identities=24%  Similarity=0.285  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ++.|+++.|.|. |.||+.+|+.| ...|++|++.+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l-~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELF-AAKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            578999999995 99999999998 578999999998764

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=87.61  E-value=1.4  Score=44.88  Aligned_cols=65  Identities=15%  Similarity=0.129  Sum_probs=49.8

Q ss_pred             cCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH
Q 016162          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (394)
Q Consensus       163 l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (394)
                      .+|++|+|+|+.          .-...+++.| ...|.+|.+|||..... .              .  .+.....++++
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~-~--------------~--~~~~~~~~~~~  355 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKED-S--------------F--FNSRLERDLAT  355 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCch-h--------------h--cCCeeeCCHHH
Confidence            478999999993          5677899997 78999999999985331 1              0  11234578999


Q ss_pred             HhcccCEEEEcCC
Q 016162          233 VLREADVISLHPV  245 (394)
Q Consensus       233 ll~~aDiV~l~lP  245 (394)
                      .+..||.|++..-
T Consensus       356 ~~~~~~~~~~~~~  368 (388)
T PRK15057        356 FKQQADVIISNRM  368 (388)
T ss_pred             HHHhCCEEEEcCC
Confidence            9999999998764

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=87.58  E-value=4.4  Score=39.84  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~  201 (394)
                      .|++|.|.|.|.+|...++.+ +..|.+ |++.+++..+
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~  197 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEK  197 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHH
Confidence            478999999999999999984 899997 6788876654

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=87.57  E-value=2.6  Score=42.17  Aligned_cols=99  Identities=10%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh---hcC-CCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANG-EQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+|+|+| .|.+|+++.+.|..--.+++.++..+....-....+.+. +..   ..+ .....+. ..+.++ +.++|+|
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~-~~~~~~~~~~~~~~~v~-~~~~~~-~~~~DvV   80 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVR-WQLDGPIPEEVADMEVV-STDPEA-VDDVDIV   80 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccccccc-ccccccccccccceEEE-eCCHHH-hcCCCEE
Confidence            5899998 999999999998433355888774333221100000000 000   000 0011111 124544 4789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +.++|.... ..+.  +.+  .+.|..+|+.+
T Consensus        81 f~a~p~~~s-~~~~--~~~--~~~G~~vIDls  107 (349)
T PRK08664         81 FSALPSDVA-GEVE--EEF--AKAGKPVFSNA  107 (349)
T ss_pred             EEeCChhHH-HHHH--HHH--HHCCCEEEECC
Confidence            999995422 2222  112  13577777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	394
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		7e-40
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-37
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		3e-34
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-29
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		8e-28
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		9e-28
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		3e-27
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		2e-25
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-25
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-24
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		4e-24
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		5e-24
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		8e-24
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-23
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-23
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-23
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		3e-23
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		6e-23
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		6e-23
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		6e-23
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		7e-23
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		8e-23
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		9e-23
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-22
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-22
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-22
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		1e-22
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-22
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		2e-22
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		4e-22
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		4e-22
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		1e-20
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		6e-19
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		7e-19
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-17
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-17
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		3e-17
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		4e-17
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		7e-17
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		3e-15
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		4e-15
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		1e-12
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		1e-12
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		2e-12
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		6e-11
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		6e-11
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		7e-11
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		8e-11
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		7e-10
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		8e-10
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-08
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-08
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		5e-08
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		6e-08
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-07
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		4e-07

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  161 bits (407), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 172/318 (54%), Gaps = 25/318 (7%)
Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N
Sbjct: 18  MLEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVAN 73
Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD- 151
            AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +  
Sbjct: 74  YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + 
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELN 192
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F                ++++LRE+D + L   L + TYHLIN+ERL  MKK AIL
Sbjct: 193 A--EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328
           +N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA 296
Query: 329 REGMATLAALNVLGKIKG 346
           REGMA L A N++   +G
Sbjct: 297 REGMAELVAKNLIAFKRG 314

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 25/317 (7%)
Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93
           +E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N 
Sbjct: 19  LEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTXLSERIDKEVFENAPKL--RIVANY 74
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 151
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 152 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
              W P  F+G  + G+T+G+IG GRIG A A+   +GF   ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
             +F                ++++LRE+D + L   L + TYHLIN+ERL   KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329
           N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 330 EGMATLAALNVLGKIKG 346
           EG A L A N++   +G
Sbjct: 298 EGXAELVAKNLIAFKRG 314

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 179/333 (53%), Gaps = 34/333 (10%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +PG + ++ L E+   VE+   +   L   +++     + +G +G +      
Sbjct: 2   RVLVTRTLPG-KALDRLRERGLEVEV--HRGLFLPKAELL----KRVEGAVGLIPTVEDR 54
Query: 77  TLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
                + RA G K  +  +VG ++VD+ AA + GI V +TPGV                 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+  +  F M ++Y+
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH 173
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
                               A   +P+ +    S++E+L+EADV+SLH  L   T+ L+N
Sbjct: 174 --------------------ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLN 212
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMK 313
           +ERL  MK+ AIL+N +RG ++D  ALVE L+ + +F  GLDV + EP + PG  L  + 
Sbjct: 213 RERLFAMKRGAILLNTARGALVDTEALVEALRGH-LFGAGLDVTDPEP-LPPGHPLYALP 270
Query: 314 NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           NA++ PHI SA + TRE MA +A  N+L  ++G
Sbjct: 271 NAVITPHIGSAGRTTRERMAEVAVENLLAVLEG 303

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 21/260 (8%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +N+DV AA + GI V N P                   R+I  AD  MR 
Sbjct: 68  KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G+   W     +G  L+G+T+G+IG GRIG   A++      MN++ YD Y      K V
Sbjct: 128 GV---WAKKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEV 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              G+F+               ++ +L+E+DV+++H  L ++TYHLIN+ERL  MKK AI
Sbjct: 184 N--GKFV--------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASK 326
           L+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  N ++ PHI +++ 
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTV 287
Query: 327 WTREGMATLAALNVLGKIKG 346
             +E      A  V+  +KG
Sbjct: 288 EAQERAGVEVAEKVVKILKG 307

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 17/245 (6%)
Query: 86  GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFM 145
           G K  + ++VGY+++D  AA   GI V +TP V                 RR  EAD  +
Sbjct: 94  GLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXV 153
Query: 146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205
           R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y++    TRL  
Sbjct: 154 RSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSH 209
Query: 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE 265
            +           E+   +    ++D +L  +D+  +           ++ +R+A + + 
Sbjct: 210 AL-----------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256
Query: 266 AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N  + PHI SA+
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSAT 316
Query: 326 KWTRE 330
             TR+
Sbjct: 317 HETRD 321

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  120 bits (302), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 153/334 (45%), Gaps = 20/334 (5%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 10  KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 67
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S M+VG +++ ++   K GI VG TP V                 R
Sbjct: 68  RILDA-AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 126
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 127 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 185
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 186 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           +++PHI SA+  TR  M+ LAA N+L  ++G P+
Sbjct: 291 VILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 29/302 (9%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  +
Sbjct: 29  DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYS 75
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G++++D++A    GI VGN P                   RR  E ++ +R   + GW 
Sbjct: 76  IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE 135
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+             
Sbjct: 136 PLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------- 181
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
            ++ E         S+D +L  +   SL+      T +  NK  + ++ + AI+VN +RG
Sbjct: 182 -SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            ++D   +V  L+   +   G DVF  EP +  G  ++ N  + PHI SA+   RE MA 
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAH 300
Query: 335 LA 336
            A
Sbjct: 301 QA 302

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 149/333 (44%), Gaps = 20/333 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 8   KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 65
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S  +VG +++ ++   K GI VG TP V                 R
Sbjct: 66  RILDA-AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 124
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 125 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 183
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 184 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +     K+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYP 348
           +++PHI SA+  TR   + LAA N+L  ++G P
Sbjct: 289 VILPHIGSATHRTRNTXSLLAANNLLAGLRGEP 321

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 24/296 (8%)
Query: 54  DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG 113
           D +AL  +    V+G         L  AL +   +  S+ +VG + VD+    + G+ V 
Sbjct: 57  DFLALQAESIRAVVGNSNAGADAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVT 114
Query: 114 NTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           NTP V                 RRI E D+++R G +     +  +     G+ VG+IG 
Sbjct: 115 NTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK--FGDFKLTTKFSGKRVGIIGL 172
Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           GRIG A A    E F   + Y+     +R +K  T Y  +               S+ E+
Sbjct: 173 GRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTYY--------------GSVVEL 212
Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
              +D++ +   L   T H+IN+E +  +  + +L+N  RGP +DE  LV  L +  +  
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 294 VGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
            GLDVFE EP +   L  ++N +++PH+ S +  TR+ MA L   N+     G P+
Sbjct: 273 AGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL 328

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 135/311 (43%), Gaps = 39/311 (12%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+ AG    S   VG +N+D++ A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                        R+    DE M A     W P   +G  ++ Q VGV+G G IG  + R
Sbjct: 107 IAEHAAIQAARVLRQDKRMDEKM-AKRDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMR 163
Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVISL
Sbjct: 164 IM-EGFGAKVIAYDIFKNPELEK----KGYYV-------------DSLDDLYKQADVISL 205
Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H        H+IN + +A MK   ++VNCSRG ++D  A++  L    +F   +D +EDE
Sbjct: 206 HVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE 265
Query: 303 -------------PYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG-- 346
                        P  +   L +  N +V PH A  +      M   A  N L  I G  
Sbjct: 266 VGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMVVKAFNNNLKLINGEK 325
Query: 347 --YPIWGNPNQ 355
              P+  N N+
Sbjct: 326 PDSPVALNKNK 336

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 154/349 (44%), Gaps = 52/349 (14%)
Query: 20  STKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTED 73
           S  P P    + LL  +DC VE+      IL     +A     CD    Q      L E 
Sbjct: 1   SMHPRP---LVALLDGRDCTVEM-----PILKDLATVAF----CDAQSTQEIHEKVLNEA 48
Query: 74  WGETLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXX 125
            G  ++    L+R   + F  + V      GY+NVD+ AA + GIAV N P         
Sbjct: 49  VGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETAD 108
Query: 126 XXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYA 181
                     RR     + +R G     +  +         ++G+T+G+IG GR G A A
Sbjct: 109 STICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVA 168
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
            +  + F  ++I+YD Y               L+   E+ +  +R  ++ ++L ++D +S
Sbjct: 169 -VRAKAFGFSVIFYDPY---------------LQDGIERSLGVQRVYTLQDLLYQSDCVS 212
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E 
Sbjct: 213 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 272
Query: 302 EP--YMKPGLSEMKNAIVVPHIA----SASKWTREGMATLAALNVLGKI 344
           EP  + +  L +  N I  PH A     AS   RE  AT     + G+I
Sbjct: 273 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRI 321

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 27/301 (8%)
Query: 51  SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGI 110
           S E++  +IG + DG+I   T      +     R   K  S  + GY+N+D+  A K GI
Sbjct: 32  SGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHSAGYDNIDLEEATKRGI 88
Query: 111 AVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQ 166
            V    G+                 R+I  AD+F+R G ++     ++ G      L G+
Sbjct: 89  YVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH-AKIWTGFKRIESLYGK 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
            VG++G G IG A AR ++  F + L Y+  ++   +EK + A                R
Sbjct: 148 KVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA----------------R 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
              +DE+L ++D++ L   L + TYH+IN+ER+  ++ +  LVN  RG ++DE A+ E +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAI 249
Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWTREGMATLAALNVLGKIK 345
           KQ  +     DVFE EP  +  L + +   ++ PH A  +   +E +   A  N+L  ++
Sbjct: 250 KQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLR 309
Query: 346 G 346
           G
Sbjct: 310 G 310

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 150/344 (43%), Gaps = 45/344 (13%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG GR+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPY---------------LSDGIERALGLQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            + +  L +  N I  PH A  S+     M   AA  +   I G
Sbjct: 295 SFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITG 338

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 137/306 (44%), Gaps = 23/306 (7%)
Query: 46  KKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAA 105
           +K  LS E++IA + D C+G+I +        +  A  +   +       G +NVD+ AA
Sbjct: 52  EKQNLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRAGTGVDNVDLEAA 108
Query: 106 NKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
            + GI V NTP                   R+I +A   M+ G    W    F+G  L G
Sbjct: 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWERKKFMGTELNG 165
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           +T+G++G GRIG   A  M + F M  I YD   +  +     ++G              
Sbjct: 166 KTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG-------------V 208
Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
           +   ++E+    D I++H  L  +T  L+N    A  KK   +VNC+RG ++DE AL+  
Sbjct: 209 QQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRA 268
Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 345
           L+        LDVF +EP     L + +N I  PH+ +++K  +       A+  +  +K
Sbjct: 269 LQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 328
Query: 346 GYPIWG 351
           G  + G
Sbjct: 329 GKSLTG 334

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 203
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 204 --LSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 329
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 330 EGMATLAALNVLGKIKG 346
             M   AA  +   I G
Sbjct: 322 IEMREEAAREIRRAITG 338

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 95  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 329
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 318
Query: 330 EGMATLAALNVLGKIKG 346
             M   AA  +   I G
Sbjct: 319 IEMREEAAREIRRAITG 335

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 37/299 (12%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+  G    S   VG +N+D+  A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
                        R+    DE  +   +D  W P   +G  ++ Q VGV+G G IG  + 
Sbjct: 107 IAEHAAIQAARILRQDKAMDE--KVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFM 162
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           ++M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVIS
Sbjct: 163 QIM-EGFGAKVITYDIFRNPELEK----KGYYV-------------DSLDDLYKQADVIS 204
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E 
Sbjct: 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264
Query: 302 E-----------PYMKPGLSEM---KNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           E            +    L+++    N +V PH A  +      M   A  N L  ++G
Sbjct: 265 EVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVKAFDNNLELVEG 323

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 23/241 (9%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+  G    S   VG +N+D+  A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
                        R+    DE  +   +D  W P   +G  ++ Q VGV+G G IG  + 
Sbjct: 107 IAEHAAIQAARILRQDKAMDE--KVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFM 162
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           ++M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVIS
Sbjct: 163 QIM-EGFGAKVITYDIFRNPELEK----KGYYV-------------DSLDDLYKQADVIS 204
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E 
Sbjct: 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264
Query: 302 E 302
           E
Sbjct: 265 E 265

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 149/344 (43%), Gaps = 45/344 (13%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG  R+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPY---------------LSDGIERALGLQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            + +  L +  N I  PH A  S+     M   AA  +   I G
Sbjct: 295 SFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITG 338

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 129/272 (47%), Gaps = 35/272 (12%)
Query: 69  QLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
           QLTE+    +FAA +R    A    +VG N V++ AA K GI V N P            
Sbjct: 69  QLTEE----IFAAANRL--IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVI 122
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
                  RRI        AG   GW         ++G+T+G++G G IGS    +  E  
Sbjct: 123 GEIIMLMRRIFPRSVSAHAG---GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESL 178
Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M + YYD   + +L+     YG             K A+S+DE+L+ +DV+SLH    K
Sbjct: 179 GMTVRYYD--TSDKLQ-----YGNV-----------KPAASLDELLKTSDVVSLHVPSSK 220
Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP----- 303
           +T  LI + +L  MKK A L+N +RG  +D  AL + L++  +    +DVF  EP     
Sbjct: 221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGE 280
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            +  P L  ++N I+ PHI  +++  +E + T
Sbjct: 281 RFSTP-LQGLENVILTPHIGGSTEEAQERIGT 311

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 67  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 125
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 126 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 173
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 174 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 219
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 220 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 279
Query: 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           + +++   ++   T  A +V   + G  +    N     +NE   P
Sbjct: 280 LGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 325

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 68  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 126
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 127 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 174
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 175 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 220
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 221 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 280
Query: 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           + +++   ++   T  A +V   + G  +    N     +NE   P
Sbjct: 281 LGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 326

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 300
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 301 VRLEIERCAAQNILQALAG 319

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 125/295 (42%), Gaps = 38/295 (12%)
Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
           E ++  LS  G K      VG+N ++ +   KY + V N P                   
Sbjct: 60  EVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLL 119
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           R+I E    M       W  NL + N +   TVG+IG G IGSA A +        +I Y
Sbjct: 120 RKIGEFRYRMDHDHDFTWPSNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAY 177
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           D+      E F+T Y  F                 D VL+EAD++SLH  L  +T ++I 
Sbjct: 178 DVAYNPEFEPFLT-YTDF-----------------DTVLKEADIVSLHTPLFPSTENMIG 219
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------------- 302
           +++L  MKK A L+NC+RG ++D  AL++ L+   +   GLD    E             
Sbjct: 220 EKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSE 279
Query: 303 -PYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
            P     L++M N ++ PH A  ++ +   M  +   + L   KG    G P  +
Sbjct: 280 IPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKG----GRPRSI 330

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 21/252 (8%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           VG + VD+  A +  I V  TPGV                 RR+ + D  +R G +    
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
             L +G+  KG+ +GV+G G+IG A A    E F  ++ Y++    +             
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRSTLS------------- 206
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                  V W    S  ++ R++DV+++       T ++++   L  +  E I+VN +RG
Sbjct: 207 ------GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            V+DE AL+E LK   +   GLDVF +EP ++       N ++ PH  SA+  TR     
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGK 320
Query: 335 LAALNVLGKIKG 346
           L   N+     G
Sbjct: 321 LVLANLAAHFAG 332

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 37/288 (12%)
Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
           DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI + N P       
Sbjct: 46  DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                       R + +    ++AG Y+      F+G  L  QTVGV+G G IG   A  
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQV-AIK 162
Query: 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243
           + +GF   +I YD Y                   G+ P       S++++ +++DVI LH
Sbjct: 163 LFKGFGAKVIAYDPY----------------PMKGDHPDF--DYVSLEDLFKQSDVIDLH 204
Query: 244 -PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
            P +++ T H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +E E
Sbjct: 205 VPGIEQNT-HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 263
Query: 303 -----------PYMKPGLSE---MKNAIVVPHIASASKWTREGMATLA 336
                       +  P   E   M N ++ PHIA  ++     M   +
Sbjct: 264 TEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFS 311

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 36/259 (13%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K     +VG++++D++   K GI V + P                   +R+   ++  R 
Sbjct: 66  KLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RV 123
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
              +    +  +   L   T+GVIG GRIGS  A   +  F   ++ YD+ +   L++  
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKG 182
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
             Y                 +S+DE+L+E+DVISLH    K T+H IN+ER++  K    
Sbjct: 183 CVY-----------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVY 225
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------KPGLSEMK------ 313
           L+N +RG V+D  AL    ++     +GLDVFEDE  +        K     +K      
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELAC 285
Query: 314 --NAIVVPHIASASKWTRE 330
             N I+ PHIA  +  + E
Sbjct: 286 KDNVIITPHIAYYTDKSLE 304

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 155 PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
           PN  +G +LKGQT+G+ G G+IG   + Y R     F MN++ +    +           
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
           +  +A+G     +  A S D +  ++DV+S+H  L+  T  +I    L  MK  A+ VN 
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTRE 330
           SR  +++E  +V  L +       +DVFE EP ++   L  M+N I  PHI    + + E
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYE 310
Query: 331 GMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSK 377
               +A  N+L  ++     GN + V       A P A +P+++ ++
Sbjct: 311 MYFGIAFQNILDILQ-----GNVDSV-------ANPTALAPALIRAE 345

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   +G +N+D   A K  I V   PG                  R++  +    ++
Sbjct: 70  KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G++         G  L G+T+G++G GRIG+    ++     M ++ YD+       + +
Sbjct: 130 GIFKK-----IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKI 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A                +A S++E+L+ +DVISLH  + K    +I+  +   MK   I
Sbjct: 184 NA----------------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASA 324
           +VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV  HI + 
Sbjct: 228 IVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQ 287
Query: 325 SKWTREGMATLAALNVLGKIK 345
           +K  ++ +A +   N+L  +K
Sbjct: 288 TKEAQKRVAEMTTQNLLNAMK 308

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 77  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 136
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 137 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 187
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 188 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 234
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 235 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 293
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 294 GSTQEAQENI----GLEVAGKLIKYSDNGS 319

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 72  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 131
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           + +      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 132 VGNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 182
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 183 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 229
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 230 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 288
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 289 GSTQEAQENI----GLEVAGKLIKYSDNGS 314

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 114/270 (42%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 229 SMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
           S++ +L EADVISLH  L++     T HL+++ RLA ++    LVN SRG V+D  AL  
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 285 HLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            L+      V LDV+E EP   P L+  +  I  PHIA  S
Sbjct: 220 LLEGGADLEVALDVWEGEPQADPELA-ARCLIATPHIAGYS 259

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+ +T+G++G G +GS   +  +E   +  +  D  +A R ++     G F      
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGP 275
                    ++DE+++EADV++ H  L K     T HL ++  +  +K  AIL+N  RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 333
           V+D  AL+  L       V LDV+E EP +   L E  + I   HIA    +T EG A
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIAG---YTLEGKA 267

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++  TVGV+G GRIG   A++   G    +I  D+++   +E + T              
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV------------ 190
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
                 S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A+
Sbjct: 191 ------SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAV 244
Query: 283 VEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKW 327
           +E ++   +   G DV + E               P  +  +      ++ PH+ S +  
Sbjct: 245 IEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDE 304
Query: 328 TREGMATLAALNV 340
             + M  ++  N+
Sbjct: 305 AVKNMVEVSYQNL 317

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 272 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 266 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267
Query: 283 VEHLKQNPMFRVGLDVFEDEP 303
              L+   +   G DV+  +P
Sbjct: 268 AAALESGQLRGYGGDVWFPQP 288

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 268
Query: 283 VEHLKQNPMFRVGLDVFEDEP 303
              L+   +   G DV+  +P
Sbjct: 269 AAALESGQLRGYGGDVWFPQP 289

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 122 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 179 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 231
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 232 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIA--SA 324
           RG + D  A+V  L+   +     DV+       D P+       M +  + PHI+  S 
Sbjct: 284 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT-----MPHNGMTPHISGTSL 338
Query: 325 SKWTREGMATLAALNVLGKIKGYPI 349
           S  TR    T   L      +G PI
Sbjct: 339 SAQTRYAAGTREILECY--FEGRPI 361

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 123 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 180 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 232
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 233 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIA--SA 324
           RG + D  A+V  L+   +     DV+       D P+       M +  + PHI+  S 
Sbjct: 285 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT-----MPHNGMTPHISGTSL 339
Query: 325 SKWTREGMATLAALNVLGKIKGYPI 349
           S  TR    T   L      +G PI
Sbjct: 340 SAQTRYAAGTREILECY--FEGRPI 362

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 136 RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
           +RI++  E  + G Y  D  +P      L++G+ V V+G G IG                
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHPVLDKTTY 251
                  TR+ K + A G  ++     P    W+  +S++E LREA        L+K T 
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
            L+  + LA   ++A+ VN  R  V+D   ++  LK+ P F    DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 337

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY- 304
           L  TT+HL + E     K++ +L+N  RGP +D  AL+  L  + +    LDV E EP  
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP 260
Query: 305 MKPGLSEMKNAIVVPHIA 322
               L +  + ++ PHI+
Sbjct: 261 TDHPLWQRDDVLITPHIS 278

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           LKG+T+ ++G G IG   A    + F M ++       +R  +    + Q  +       
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQVYQL------ 185
Query: 223 TWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
                 +++++L +ADVI S+ P   + T+HL    R    K  AIL N  RG  I+E  
Sbjct: 186 -----PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNVGRGNAINEGD 239
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM---KNAIVVPHIASASKWTREGMATLAAL 338
           L+  L+   +    LDVFE EP   P  S +    N I+ PH ++ S    + +A +   
Sbjct: 240 LLTALRTGKLGMAVLDVFEQEPL--PADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVR 295
Query: 339 NVLGKIKGYPIWG 351
           N +  I G P+ G
Sbjct: 296 NYIRFIDGQPLDG 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-111
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-111
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-107
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-107
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-105
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-103
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-100
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	6e-96
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	2e-95
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	2e-93
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	5e-88
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	9e-88
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-85
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	1e-83
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	4e-83
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	3e-82
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-80
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	1e-79
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	7e-78
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	4e-77
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	9e-76
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	4e-73
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	5e-73
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	1e-71
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	2e-68
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	1e-65
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	1e-65
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	6e-63
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	3e-60
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	4e-58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-31
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	1e-29
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  328 bits (843), Expect = e-111
 Identities = 88/342 (25%), Positives = 156/342 (45%), Gaps = 23/342 (6%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLPEA-AMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P  +T  TAE+A  L L +
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGS 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y
Sbjct: 116 ARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDY 174

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +D ++                ++ E         S+D +L  +   SL+      T +  
Sbjct: 175 FDTHR--------------ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 220

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DVF  EP +  G  ++ N
Sbjct: 221 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 280

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             + PHI SA+   RE MA  A   +     G  +      +
Sbjct: 281 TFLFPHIGSAATQAREDMAHQANDLIDALFGGADM---SYAL 319

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  327 bits (842), Expect = e-111
 Identities = 128/356 (35%), Positives = 196/356 (55%), Gaps = 30/356 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E +  VE+    +  +  E ++  + +  D ++  L+E  
Sbjct: 2   KPKVFITREIP-EVGIKML-EDEFEVEVW-GDEKEIPREILLKKVKE-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +F    +   +  +N AVGY+N+D+  A K GI V NTP VLT+ TA+LA +L LA 
Sbjct: 58  DKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115

Query: 135 ARRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           AR +V+ D F+R+G        W P  F+G  + G+T+G+IG GRIG A A+   +GF M
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +   +E+ + A                    ++++LRE+D + L   L + T
Sbjct: 175 RILYYSRTRKEEVERELNA----------------EFKPLEDLLRESDFVVLAVPLTRET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YHLIN+ERL  MKK AIL+N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           ++ N ++ PHI SAS   REGMA L A N++   +G      P  V   + +  +P
Sbjct: 279 KLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIP---PTLVNREVIKIRKP 331

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  318 bits (818), Expect = e-107
 Identities = 106/349 (30%), Positives = 163/349 (46%), Gaps = 29/349 (8%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
           P    +V  T+ +P       L    DC VE        +  +++   +     G++  L
Sbjct: 5   PVRLMKVFVTRRIP-AEGRVALARAADCEVEQ-WDSDEPIPAKELERGVAG-AHGLLCLL 61

Query: 71  TEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA 128
           ++   + +  A   AG   K  S M+VG +++ ++   K GI VG TP VLT+TTAELA 
Sbjct: 62  SDHVDKRILDA---AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAV 118

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           SL L   RR+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +   F
Sbjct: 119 SLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PF 177

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            +    Y         +    +             +    S  E+  ++D I +   L  
Sbjct: 178 GVQRFLYT--GRQPRPEEAAEFQ----------AEFV---STPELAAQSDFIVVACSLTP 222

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKP 307
            T  L NK+    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP     
Sbjct: 223 ATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 282

Query: 308 GLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
            L  +KN +++PHI SA+  TR  M+ LAA N+L  ++G P+   P+++
Sbjct: 283 PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM---PSEL 328

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  318 bits (817), Expect = e-107
 Identities = 90/342 (26%), Positives = 157/342 (45%), Gaps = 25/342 (7%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             +    +       I   + Q   +E+   + T+L+   I +      + +    TE  
Sbjct: 28  IQKAFLCRRFTPA--IEAELRQRFDLEV-NLEDTVLTPSGIASRAHG-AEVLFVTATEAI 83

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +   L   G K  + ++VGY+++D+ AA   GI V +TP VL++  AE+A  L L A
Sbjct: 84  TAEVIRKLQ-PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNA 142

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RR  EAD  +R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y
Sbjct: 143 CRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHY 201

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++  + +   +    Y                  ++D +L  +D+  +           +
Sbjct: 202 HNRTRLSHALEEGAIY----------------HDTLDSLLGASDIFLIAAPGRPELKGFL 245

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           + +R+A + + A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N
Sbjct: 246 DHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDN 305

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             + PHI SA+  TR+ M  L    +    +        N +
Sbjct: 306 IFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVP---DNLI 344

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  312 bits (803), Expect = e-105
 Identities = 120/341 (35%), Positives = 183/341 (53%), Gaps = 33/341 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +P  + ++ L E+    E+   +   L   +++  +     G+I  + +    
Sbjct: 2   RVLVTRTLP-GKALDRLRERGL--EVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDA 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
            +         K  +  +VG ++VD+ AA + GI V +TPGVLTE TA+L  +L LA AR
Sbjct: 58  EVMDRAKGL--KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+     F M ++Y+ 
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                R  K               P  +    S++E+L+EADV+SLH  L   T+ L+N+
Sbjct: 175 -----RTPK-------------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNR 213

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNA 315
           ERL  MK+ AIL+N +RG ++D  ALVE L+   +F  GLDV + EP      L  + NA
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272

Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
           ++ PHI SA + TRE MA +A  N+L  ++G      PN V
Sbjct: 273 VITPHIGSAGRTTRERMAEVAVENLLAVLEGREP---PNPV 310

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  307 bits (788), Expect = e-103
 Identities = 97/350 (27%), Positives = 152/350 (43%), Gaps = 34/350 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             ++V T  +     + LL    C +    Q  + L+ E+I+    D    ++  + +  
Sbjct: 2   LPKLVITHRVHE-EILQLL-APHCELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRV 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
                 A      +       G++N DV+A    G+ +   P +LT  TAELA  L++  
Sbjct: 58  DADFLQACPEL--RVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            R +  AD F+R+G + GW P  F G  L   TVG +G G IG A A  +  G+   L Y
Sbjct: 116 GRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQY 173

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++                 L    EQ +  ++  +  E+   +D I L   L+  T HL+
Sbjct: 174 HEAKA--------------LDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV 218

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-------- 306
           N E LA ++  A+LVN  RG V+DE A++  L++  +     DVFE E + +        
Sbjct: 219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQID 278

Query: 307 PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
           P L    N +  PHI SA +  R  +   AA N+L  + G       N V
Sbjct: 279 PALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERP---INAV 325

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  299 bits (768), Expect = e-100
 Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 25/323 (7%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGG 87
            +Q   V            + +        + +I      G  +  W   L + L  +  
Sbjct: 23  FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP-SSL 81

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G     T++LA  L L+  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141

Query: 148 GLYDGWLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +           +  +G  +G +G G I    AR  V G  M L+YYD+      
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP---- 197

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 198 ----------ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307

Query: 324 ASKWTREGMATLAALNVLGKIKG 346
            +  T      L   N+   +  
Sbjct: 308 VAIETFHEFERLTMTNIDRFLLQ 330

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  289 bits (741), Expect = 6e-96
 Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 34/346 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V     M     +  L ++   VEI        S E++  +IG   DG+I   T   
Sbjct: 2   RPKVGVLLKMKRE-ALEEL-KKYADVEIILY----PSGEELKGVIGR-FDGIIVSPTTKI 54

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +     R   K  S  + GY+N+D+  A K GI V    G+L+E  AE    L +  
Sbjct: 55  TREVLENAERL--KVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112

Query: 135 ARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
            R+I  AD+F+R G ++              L G+ VG++G G IG A AR +   F + 
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVK 171

Query: 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
           L Y+  ++   +EK + A                R   +DE+L ++D++ L   L + TY
Sbjct: 172 LYYWSRHRKVNVEKELKA----------------RYMDIDELLEKSDIVILALPLTRDTY 215

Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL-S 310
           H+IN+ER+  ++    LVN  RG ++DE A+ E +KQ  +     DVFE EP  +  L  
Sbjct: 216 HIINEERVKKLEG-KYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFK 274

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
                ++ PH A  +   +E +   A  N+L  ++G       + V
Sbjct: 275 YEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVP---EDLV 317

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  287 bits (738), Expect = 2e-95
 Identities = 91/346 (26%), Positives = 148/346 (42%), Gaps = 32/346 (9%)

Query: 11  NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
             N K  ++  +PM    ++   ++++  V    Q         + A +      V    
Sbjct: 26  FRNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQA---ADRPALEAALPS-IRAVATGG 79

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
                      L        +   VG + VD+  A +  I V  TPGVL +  A+L  +L
Sbjct: 80  GAGLSNEWMEKLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIAL 137

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            LA  RR+ + D  +R G +      L +G+  KG+ +GV+G G+IG A A    E F M
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAG-EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGM 195

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           ++ Y++     R                   V W    S  ++ R++DV+++       T
Sbjct: 196 SVRYWN-----RSTL--------------SGVDWIAHQSPVDLARDSDVLAVCVAASAAT 236

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
            ++++   L  +  E I+VN +RG V+DE AL+E LK   +   GLDVF +EP ++    
Sbjct: 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFH 296

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
              N +++PH  SA+  TR  M  L   N+     G      PN V
Sbjct: 297 TTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA---PNTV 339

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  282 bits (724), Expect = 2e-93
 Identities = 95/342 (27%), Positives = 157/342 (45%), Gaps = 32/342 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
              V+   PM    ++   +++  ++    +  T  +  D +AL  +    V+G      
Sbjct: 23  AIGVLMMCPMST--YLEQELDKRFKL---FRYWTQPAQRDFLALQAESIRAVVGNSNAGA 77

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L  AL +   +  S+ +VG + VD+    + G+ V NTP VLT+  A+LA  L LA 
Sbjct: 78  DAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RRI E D+++R G +     +  +     G+ VG+IG GRIG A A    E F   + Y
Sbjct: 136 LRRICECDKYVRRGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISY 192

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +      R +K                  +    S+ E+   +D++ +   L   T H+I
Sbjct: 193 FS-----RSKK--------------PNTNYTYYGSVVELASNSDILVVACPLTPETTHII 233

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N+E +  +  + +L+N  RGP +DE  LV  L +  +   GLDVFE EP +   L  ++N
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLEN 293

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
            +++PH+ S +  TR+ MA L   N+     G P+      V
Sbjct: 294 VVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL---LTPV 332

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  269 bits (689), Expect = 5e-88
 Identities = 88/351 (25%), Positives = 145/351 (41%), Gaps = 29/351 (8%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
            +    V        T  + +L +    V  C       S ++I   + ++  G +   T
Sbjct: 18  GSHMPLVALLDGRDCTVEMPIL-KDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHT 72

Query: 72  EDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS 131
                           +    +  G++N+D+ +A   GIAV N P    E TA+      
Sbjct: 73  ITLTREDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHI 130

Query: 132 LAAARRIVEADEFMRAGL----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187
           L   RR     + +R G      +           ++G+T+G+IG GR+G A A    + 
Sbjct: 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KA 189

Query: 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247
           F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH  L+
Sbjct: 190 FGFNVLFYDPY---------------LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLN 234

Query: 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP 307
           +  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP+   
Sbjct: 235 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 294

Query: 308 G--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
              L +  N I  PH A  S+     M   AA  +   I G       N V
Sbjct: 295 QGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCV 345

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  267 bits (684), Expect = 9e-88
 Identities = 64/310 (20%), Positives = 111/310 (35%), Gaps = 35/310 (11%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           +    + G     V   L         A + R   K    +  G +++   +     + V
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRL--KFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
               G   +  AE A +L LA  +RI++  E M+ G Y   +       L++G+ V V+G
Sbjct: 76  AGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE----IPLIQGEKVAVLG 131

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG+   +++       +  +                            W+  +S++E
Sbjct: 132 LGEIGTRVGKIL-AALGAQVRGFSRTPK--------------------EGPWRFTNSLEE 170

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
            LREA        L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F
Sbjct: 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 230

Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTR--EGMATLAALNVLGKIKGYP 348
               DV+              + N +  P +A      R    M   A  N++    G  
Sbjct: 231 IFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGR 290

Query: 349 IWGNPNQVEP 358
                N  + 
Sbjct: 291 P---RNIAKR 297

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  260 bits (668), Expect = 2e-85
 Identities = 105/333 (31%), Positives = 169/333 (50%), Gaps = 29/333 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V+   P+   + I +L +    V      +     + ++ L+ D  + +I +     
Sbjct: 3   RMKVLVAAPLH-EKAIQVLKDAGLEVIY----EEYPDEDRLVELVKD-VEAIIVRSKPKV 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +  +  +   K  +   VG +N+DV AA + GI V N P   + + AELA  L  + 
Sbjct: 57  TRRVIESAPKL--KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           AR+I  AD  MR G    W     +G  L+G+T+G+IG GRIG   A++      MN++ 
Sbjct: 115 ARKIAFADRKMREG---VWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILL 170

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y     E+                  +     ++ +L+E+DV+++H  L ++TYHLI
Sbjct: 171 YDPYPN---EERAKEVN----------GKFV---DLETLLKESDVVTIHVPLVESTYHLI 214

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMK 313
           N+ERL  MKK AIL+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  
Sbjct: 215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFD 274

Query: 314 NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           N ++ PHI +++   +E      A  V+  +KG
Sbjct: 275 NVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  258 bits (661), Expect = 4e-83
 Identities = 70/330 (21%), Positives = 127/330 (38%), Gaps = 26/330 (7%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG-- 87
           +   +E +    + T  K           + D  D VI Q    W   L           
Sbjct: 59  LRKYLESNGHTLVVTSDKD-GPDSVFERELVD-ADVVISQPF--WPAYLTPERIAKAKNL 114

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +G ++VD+ +A    + V       + + AE    + L+  R  + + E+ R 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARK 174

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G ++     +     L+   VG + AGRIG A  R +   F ++L Y D ++        
Sbjct: 175 GGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR-------- 224

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                 L  + E+ +     ++ +++    DV++L+  L   T H+IN E L   K+ A 
Sbjct: 225 ------LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY 278

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326
           +VN +RG + D  A+   L+   +     DV+  +P  K      M    + PHI+  + 
Sbjct: 279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 338

Query: 327 WTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             +   A      +    +G PI    ++ 
Sbjct: 339 TAQARYAAGTREILECFFEGRPI---RDEY 365

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  254 bits (650), Expect = 3e-82
 Identities = 85/319 (26%), Positives = 133/319 (41%), Gaps = 39/319 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
            + +AL     DGV+     D+      AL+  G    S   VG +N+D+  A + G  +
Sbjct: 38  PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQI 96

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE AA  +    R+    DE +             +G  ++ Q VGV+G
Sbjct: 97  TNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVG 153

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG  + ++M EGF   +I YD+++   LEK                       S+D+
Sbjct: 154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV-----------------DSLDD 195

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + ++ADVISLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASKWTREGMATLAAL 338
              +DV+E E  +                 L    N +V P  A  +      M   A  
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFD 315

Query: 339 NVLGKIKGYPIWGNPNQVE 357
           N L  ++G         V+
Sbjct: 316 NNLELVEGKE---AETPVK 331

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  249 bits (638), Expect = 2e-80
 Identities = 66/326 (20%), Positives = 127/326 (38%), Gaps = 40/326 (12%)

Query: 47  KTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106
              L+ ++   +     D VI +      +       + G K       G +++D   A 
Sbjct: 31  PDYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAK 89

Query: 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 166
           + G  +   P       AELA + ++   R             +   +        ++  
Sbjct: 90  ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--VDAFMFSKEVRNC 147

Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           TVGV+G GRIG   A++   G    +I  D+++   +E + T                  
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---------------- 189

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
             S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A++E +
Sbjct: 190 -VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248

Query: 287 KQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKWTREG 331
           +   +   G DV + E               P  +  +      ++ PH+ S +    + 
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKN 308

Query: 332 MATLAALNVLGKIKGYPIWGNPNQVE 357
           M  ++  N+    +       PN+++
Sbjct: 309 MVEVSYQNLKDLAETGDC---PNKIK 331

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  245 bits (629), Expect = 1e-79
 Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 31/312 (9%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGY 97
           +++         V +I   + D  D        D    +       G   K    ++ G 
Sbjct: 1   LDVYVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGV 60

Query: 98  NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157
           +++DVN   +  +   N     + + AE A +L LA A+ I+E +E M+AG++       
Sbjct: 61  DHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--- 116

Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN 217
               LL G+ +G++G G IG   A +  + F M +I Y                   +  
Sbjct: 117 --TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD-------------QNV 160

Query: 218 GEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277
                      S  ++ R++D + +   L   T  ++N   LA  +K   +VN +R  V+
Sbjct: 161 DVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV 214

Query: 278 DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI-ASASKWTREGMATLA 336
            +  ++  LK+        DV+ +EP  +   + ++NAI+ PH+    S    +    LA
Sbjct: 215 SKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDIAIQLA 272

Query: 337 ALNVLGKIKGYP 348
             NV    +G  
Sbjct: 273 FENVRNFFEGEG 284

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  243 bits (622), Expect = 7e-78
 Identities = 66/317 (20%), Positives = 122/317 (38%), Gaps = 32/317 (10%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGGKAFSNMA 94
           +            ++   I D    +I        +T +              K      
Sbjct: 42  QYIVTDDKEGPDCELEKHIPD-LHVLISTPFHPAYVTAE----RIKKAKNL--KLLLTAG 94

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D+ AA   G+ V    G    + AE      L   R  V     +  G ++   
Sbjct: 95  IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-VA 153

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              +    L+G+T+G +GAGRIG    + +   F  NL+Y+D  Q              +
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ--------------M 198

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
               E+    K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG
Sbjct: 199 APELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG 258

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASKWTREGM 332
            +++  A+V+ ++   +     DV++ +P  K  P    M N  + PH +  +   +   
Sbjct: 259 AIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHP-WRYMPNQAMTPHTSGTTIDAQLRY 317

Query: 333 ATLAALNVLGKIKGYPI 349
           A      +    KG   
Sbjct: 318 AAGTKDMLERYFKGEDF 334

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  241 bits (617), Expect = 4e-77
 Identities = 85/341 (24%), Positives = 140/341 (41%), Gaps = 51/341 (14%)

Query: 29  WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAAL- 82
             +LL + + +V       T+  V  + A + D  + ++      ++T      L   L 
Sbjct: 20  CFSLLQDHEVKV----FNNTVKGVGQLAARVAD-VEALVLIRERTRVTRQ----LLDRLP 70

Query: 83  -----SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
                S+ G            ++D+ A    G+ V    G      AEL  +L +AA RR
Sbjct: 71  KLKIISQTGRV----SRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRR 125

Query: 138 IVEADEFMRAG-------LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           I +    ++ G             PN  +G +LKGQT+G+ G G+IG   A      F M
Sbjct: 126 IPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGM 184

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           N++                +G+       +   +  A S D +  ++DV+S+H  L+  T
Sbjct: 185 NVL---------------VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDET 229

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-- 308
             +I    L  MK  A+ VN SR  +++E  +V  L +       +DVFE EP +  G  
Sbjct: 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-ILQGHT 288

Query: 309 LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           L  M+N I  PHI    + + E    +A  N+L  ++G   
Sbjct: 289 LLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVD 329

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  237 bits (606), Expect = 9e-76
 Identities = 78/318 (24%), Positives = 133/318 (41%), Gaps = 39/318 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E+ +       DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI +
Sbjct: 36  ENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL 94

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE A + +L   R + +    ++AG Y+      F+G  L  QTVGV+G
Sbjct: 95  SNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--KAGTFIGKELGQQTVGVMG 152

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG    ++  +GF   +I YD Y           Y                  S+++
Sbjct: 153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y-----------------VSLED 193

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + +++DVI LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   + 
Sbjct: 194 LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASKWTREGMATLAAL 338
            VG+D +E E                    L  M N ++ PHIA  ++     M   +  
Sbjct: 254 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQ 313

Query: 339 NVLGKIKGYPIWGNPNQV 356
           +++  +          +V
Sbjct: 314 HLVDFLTKGET---STEV 328

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  229 bits (587), Expect = 4e-73
 Identities = 80/332 (24%), Positives = 152/332 (45%), Gaps = 50/332 (15%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           I  L E+  +V+        +S E+++ +IG+  D ++     ++T+   + +       
Sbjct: 19  IKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTK---DVIEKGKKLK 70

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            ++RAG        +G +N+D   A K  I V   PG  T++  EL   L +AAAR++  
Sbjct: 71  IIARAG--------IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT 122

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           +    ++G    +      G  L G+T+G++G GRIG+    +      M ++ YD+   
Sbjct: 123 SMALAKSG---IF--KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI 176

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               +                       S++E+L+ +DVISLH  + K    +I+  +  
Sbjct: 177 ---REKAEKIN----------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE 220

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIV 317
            MK   I+VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV
Sbjct: 221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIV 280

Query: 318 VPHIASASKWTREGMATLAALNVLGKIKGYPI 349
             HI + +K  ++ +A +   N+L  +K   +
Sbjct: 281 TTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM 312

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  230 bits (589), Expect = 5e-73
 Identities = 96/330 (29%), Positives = 152/330 (46%), Gaps = 47/330 (14%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS-- 83
             +L +   +V      K  LS E++IA + D C+G+I     ++T D    +  A    
Sbjct: 40  RKILQDGGLQVVE----KQNLSKEELIAELQD-CEGLIVRSATKVTAD----VINAAEKL 90

Query: 84  ----RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
               RAG         G +NVD+ AA + GI V NTP   + + AEL   + +  AR+I 
Sbjct: 91  QVVGRAG--------TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIP 142

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
           +A   M+ G    W    F+G  L G+T+G++G GRIG   A  M + F M  I YD   
Sbjct: 143 QATASMKDG---KWERKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPII 198

Query: 200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
           +    +   ++G          V       ++E+    D I++H  L  +T  L+N    
Sbjct: 199 S---PEVSASFG----------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTF 242

Query: 260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319
           A  KK   +VNC+RG ++DE AL+  L+        LDVF +EP     L + +N I  P
Sbjct: 243 AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCP 302

Query: 320 HIASASKWTREGMATLAALNVLGKIKGYPI 349
           H+ +++K  +       A+  +  +KG  +
Sbjct: 303 HLGASTKEAQSRCGEEIAVQFVDMVKGKSL 332

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  232 bits (594), Expect = 1e-71
 Identities = 92/341 (26%), Positives = 150/341 (43%), Gaps = 36/341 (10%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 20  ALGDQVEVRW----VDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR 72

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P     + AE A +L LAA+R+I  AD  +R      
Sbjct: 73  AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---T 129

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + F G  + G+TVGV+G GRIG   A+ +   F   ++ YD         +V+    
Sbjct: 130 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--A 178

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                G + ++       D++L  AD IS+H      T  LI+KE LA  K   I+VN +
Sbjct: 179 RAAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 332
           RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH+ +++   ++  
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292

Query: 333 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSI 373
            T  A +V   + G  +   P+ V      N      +  +
Sbjct: 293 GTDVAESVRLALAGEFV---PDAV------NVGGGVVNEEV 324

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  219 bits (560), Expect = 2e-68
 Identities = 77/329 (23%), Positives = 128/329 (38%), Gaps = 52/329 (15%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAA-----LSRAGGK 88
            E+ T          +   I D  D +I        +T+   E +  A     +  AG  
Sbjct: 39  HELITTSDKEGGNSVLDQHIPD-ADIIITTPFHPAYITK---ERIDKAKKLKLVVVAG-- 92

Query: 89  AFSNMAVGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
                 VG +++D++  N+ G  I+V    G    + AE      L   R  V A E + 
Sbjct: 93  ------VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQII 146

Query: 147 AGLYDGWLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                 W           ++G+T+  IGAGRIG      +V  F    + Y  YQA   +
Sbjct: 147 NH---DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKD 202

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                         E+ V  +R  +++E++ +AD+++++  L   T  LINKE L+  KK
Sbjct: 203 A-------------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN-----AIV 317
            A LVN +RG +     +   L+   +   G DV+  +P  K  P   +M+N       +
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHP-WRDMRNKYGAGNAM 308

Query: 318 VPHIASASKWTREGMATLAALNVLGKIKG 346
            PH +  +   +   A      +     G
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTG 337

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  213 bits (544), Expect = 1e-65
 Identities = 78/302 (25%), Positives = 120/302 (39%), Gaps = 53/302 (17%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAFSNM 93
              K  L  E +   I D    +       LTED    +  A                  
Sbjct: 30  EFHKGALDDEQLKESIRD-AHFIGLRSRTHLTED----VINAAEKLVAIGAFA------- 77

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
            +G N VD++AA K GI V N P   T + AEL     L   R + EA+     G     
Sbjct: 78  -IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VG 133

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                     +G+ +G+IG G IG+    +  E   M + +YD+     L          
Sbjct: 134 NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG--------- 183

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
              N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N SR
Sbjct: 184 ---NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 234

Query: 274 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASASKWT 328
           G V+D  AL + L    +    +DVF  EP          L+E  N ++ PHI   S  T
Sbjct: 235 GTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG-GS--T 291

Query: 329 RE 330
           +E
Sbjct: 292 QE 293

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  213 bits (545), Expect = 1e-65
 Identities = 91/305 (29%), Positives = 131/305 (42%), Gaps = 53/305 (17%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAF 90
              T     L   D+I  I      +      QLTE+    +FAA +             
Sbjct: 38  TNVTHLPKALDKADLIKAISS-AHIIGIRSRTQLTEE----IFAAANRLIAVGCFS---- 88

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
               VG N V++ AA K GI V N P   T + AEL     +   RRI        AG  
Sbjct: 89  ----VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-- 142

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW         ++G+T+G++G G IGS    +  E   M + YYD     +L+      
Sbjct: 143 -GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY----- 193

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
                 N +       A+S+DE+L+ +DV+SLH    K+T  LI + +L  MKK A L+N
Sbjct: 194 -----GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASAS 325
            +RG  +D  AL + L++  +    +DVF  EP          L  ++N I+ PHI   S
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG-GS 301

Query: 326 KWTRE 330
             T E
Sbjct: 302 --TEE 304

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  204 bits (520), Expect = 6e-63
 Identities = 63/301 (20%), Positives = 108/301 (35%), Gaps = 38/301 (12%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAA 105
           T      + A   D+ + + G         L   L+R     K    ++ G + + + A 
Sbjct: 26  TFKDAAAVTAADYDQIEVMYG-----NHPLLKTILARPTNQLKFVQVISAGVDYLPLKAL 80

Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
              G+ V NT G+  +  +E   +  L+  R    A    R              + L G
Sbjct: 81  QAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---RQWALPMTTSTLTG 137

Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           Q + + G G+IG + A        M++I  +       + F                   
Sbjct: 138 QQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA-------------- 181

Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
             ++  + L  A+ I     L  TT+HL + E     K++ +L+N  RGP +D  AL+  
Sbjct: 182 -FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240

Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALN 339
           L  + +    LDV E EP     L          + ++ PHI+      R  +  + A N
Sbjct: 241 LDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAAN 295

Query: 340 V 340
            
Sbjct: 296 F 296

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  198 bits (506), Expect = 3e-60
 Identities = 70/270 (25%), Positives = 105/270 (38%), Gaps = 51/270 (18%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D++   + GIA  + PG       +      LA A                   
Sbjct: 67  IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L  +T GV+GAG++G     ++  G    ++  D  +  R            
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
                + V      S++ +L EADVISLH       +  T HL+++ RLA ++    LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
            SRG V+D  AL   L+      V LDV+E EP   P L   +  I  PHIA     + E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIA-GY--SLE 261

Query: 331 G--MATLAALNVLGKIKGYPIWGNPNQVEP 358
           G    T          +G     +   V P
Sbjct: 262 GKLRGTAQIYQAYCAWRGIAERVSLQDVLP 291

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  193 bits (492), Expect = 4e-58
 Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 49/241 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD     + GI     PG       E   S  L  A R                 
Sbjct: 70  AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L+ +T+G++G G +GS     + E   +  +  D  +A R            
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
             +           ++DE+++EADV++ H          T HL ++  +  +K  AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
             RGPV+D  AL+  L       V LDV+E EP +   L E  + I   HIA     T E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA-GY--TLE 264

Query: 331 G 331
           G
Sbjct: 265 G 265

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  121 bits (305), Expect = 1e-31
 Identities = 59/257 (22%), Positives = 99/257 (38%), Gaps = 40/257 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
              + N  G+     +E      L+  R++    E  +  L   W         LKG+T+
Sbjct: 89  DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
            ++G G IG   A    + F M ++            F   Y                  
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186

Query: 229 SMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           +++++L +AD ++S+ P   + T+HL    R    K  AIL N  RG  I+E  L+  L+
Sbjct: 187 ALNKMLAQADVIVSVLP-ATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245

Query: 288 QNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALNVL 341
              +    LDVFE EP     L          N I+ PH ++ S    + +A +   N +
Sbjct: 246 TGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYI 298

Query: 342 GKIKGYPIWGNPNQVEP 358
             I G P+     +++ 
Sbjct: 299 RFIDGQPL---DGKIDF 312

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  115 bits (290), Expect = 1e-29
 Identities = 54/284 (19%), Positives = 91/284 (32%), Gaps = 46/284 (16%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEA 141
           KA   +  G + +         +   + P        +     E A S  L   RR  + 
Sbjct: 61  KAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDY 120

Query: 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
                  L   W P        +  +VG++GAG +G+  A  +   +   L  +      
Sbjct: 121 QALKNQAL---WKP--LPEYTREEFSVGIMGAGVLGAKVAESLQ-AWGFPLRCWS-RSRK 173

Query: 202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLA 260
                 +  G                  +   L +   +I+L P     T  +IN E L 
Sbjct: 174 SWPGVESYVG---------------REELRAFLNQTRVLINLLP-NTAQTVGIINSELLD 217

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKN 314
            +   A ++N +RG  + E  L+  L    +    LDVF  EP     L +         
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-----LPQESPLWRHPR 272

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
             + PHIA+ +           +  +    KG P+     QV+ 
Sbjct: 273 VAMTPHIAAVT--RPAEAIDYISRTITQLEKGEPV---TGQVDR 311

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           + G  V V+G GR+G + AR         +                     +   G +P 
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
              +     + LR+ DV             ++    LA M     +++ +  P   +   
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254

Query: 283 VEHLKQNPMFRVGL 296
            E      +   GL
Sbjct: 255 AEKRGIKALLVPGL 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 68/463 (14%), Positives = 128/463 (27%), Gaps = 154/463 (33%)

Query: 14  GK----------YRVVSTKPMPGTRWINL--------LIEQDCRVEICTQ-KKTILSVED 54
           GK          Y+V          W+NL        ++E     ++  Q      S  D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSD 218

Query: 55  IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV-DVNAANKYGIAVG 113
             + I  +   +  +L       L  +      K + N  +   NV +  A N + +   
Sbjct: 219 HSSNIKLRIHSIQAELRR-----LLKS------KPYENCLLVLLNVQNAKAWNAFNL--- 264

Query: 114 NTPG--VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-------VGNL-- 162
                 +L  TT     +  L+AA     + +     L    + +L          +L  
Sbjct: 265 ---SCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 163 --LKG--QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG 218
             L    + + +I             +         +      +L   + +    L+   
Sbjct: 321 EVLTTNPRRLSIIAE----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 219 EQ---------------P-----VTWKRASS------MDEVLREADV--------ISLHP 244
            +               P     + W           ++++ + + V        IS+  
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 245 VLDKTTYHLINKERLATMKKEAILVN--------CSRGPVIDEVA------LVEHLKQ-- 288
           +  +    L N+  L        +V+         S   +   +       +  HLK   
Sbjct: 431 IYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 289 ----NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKI 344
                 +FR    VF D          ++  I       ++ W   G + L  L  L   
Sbjct: 486 HPERMTLFR---MVFLD-------FRFLEQKI----RHDSTAWNASG-SILNTLQQLKFY 530

Query: 345 KGYPIWGN-P------NQVEPFLNENAQPPAASPSIVNSKVCR 380
           K Y I  N P      N +  FL      P    +++ SK   
Sbjct: 531 KPY-ICDNDPKYERLVNAILDFL------PKIEENLICSKYTD 566

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.9
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.81
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.81
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.77
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.73
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.71
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.69
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.66
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.65
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.33
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.33
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.3
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.29
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.28
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.28
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.28
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.28
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.24
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.23
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.22
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.21
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.19
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.18
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.18
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.15
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.15
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.15
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.13
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.13
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.12
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.12
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.12
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.12
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.09
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.05
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.03
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.98
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.97
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.97
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.97
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.96
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.93
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.92
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.91
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.9
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.9
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.89
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.87
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.86
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.86
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.83
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.83
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.83
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.81
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.77
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.77
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.76
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.24
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.73
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.73
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.73
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.62
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.6
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.6
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.59
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.59
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.58
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.57
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.56
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.55
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.55
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.55
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.55
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.55
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.54
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.54
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.53
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.52
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.46
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.45
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.4
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.37
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.37
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.36
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.33
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.32
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.32
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.32
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.31
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.3
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.3
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.28
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.27
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.27
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.26
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.25
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.24
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.24
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.23
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.2
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.2
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.19
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.17
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.16
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.15
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.14
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.14
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.13
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.12
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.11
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.11
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.09
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.08
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.08
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.02
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.01
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.94
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.92
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.92
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.9
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.89
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.86
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.84
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.83
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.81
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.79
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.78
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.77
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.74
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.73
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.72
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.69
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.69
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.69
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.64
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.63
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.62
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.61
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.6
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.57
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.57
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.57
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.55
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.51
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.5
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.47
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.44
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.44
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.42
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.4
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.39
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.38
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.37
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.37
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.36
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.36
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.36
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.33
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.31
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.29
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.27
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.27
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.27
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.25
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.23
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.23
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.23
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.22
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.21
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.2
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.2
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.2
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.11
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.1
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.09
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.07
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.05
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.04
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.04
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.99
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.99
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.97
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.96
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.94
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.92
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.92
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.88
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.86
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.86
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.85
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.85
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.78
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.78
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.77
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.75
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.74
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.73
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.73
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.72
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.72
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.7
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.68
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.68
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.67
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.67
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.67
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.66
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.65
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.58
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.56
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.56
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.54
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.54
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.52
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.51
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.49
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.49
4had_A	350	Probable oxidoreductase protein; structural genomi	96.49
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.49
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.47
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.45
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.42
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.39
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.39
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.37
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.35
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.35
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.33
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.33
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.32
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.25
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.21
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.19
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.18
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.17
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.17
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.15
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.15
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.13
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.12
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.12
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.12
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.11
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.11
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.1
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.09
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.07
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.06
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.06
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.05
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.05
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.03
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.02
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.02
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.0
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	95.98
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.98
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.98
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.96
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.94
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.94
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.94
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	95.93
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.92
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.91
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.9
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.88
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	95.86
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	95.86
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.85
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.84
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.83
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.82
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.81
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.8
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.8
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.8
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	95.78
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.77
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.74
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.74
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.74
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.73
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.73
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.69
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.68
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.68
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.67
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.67
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	95.66
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.66
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.64
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.63
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.63
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.63
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.62
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.61
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.61
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.61
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.6
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.6
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.58
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	95.55
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.55
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	95.55
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.54
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.53
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.52
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.52
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.5
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.47
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.46
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.42
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.41
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.38
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.37
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.37
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.35
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.34
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.34
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.32
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.32
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.31
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	95.3
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.27
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.26
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.26
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.25
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.24
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.24
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.22
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.21
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.21
3on5_A	362	BH1974 protein; structural genomics, joint center	95.21
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.2
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.15
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.07
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.07
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.04
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.03
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.03
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.02
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.02
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.02
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.99
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.97
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.97
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	94.95
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.93
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.92
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	94.92
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.9
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.87
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	94.84
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	94.8
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	94.79
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	94.78
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.78
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.77
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.76
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.76
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.75
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	94.72
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.72
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.71
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	94.71
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.69
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.69
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.68
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.66
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.64
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.61
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.59
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	94.58
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.57
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.56
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.54
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.53
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	94.51
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.51
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.5
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.48
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.48
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.47
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.47
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.45
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	94.4
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	94.39
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.39
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.38
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.31
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.28
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.24
1lnq_A	336	MTHK channels, potassium channel related protein;	94.19
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.08
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.02
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.02
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.01
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.99
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.97
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.95
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.92
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	93.9
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	93.89
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	93.89
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.87
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.85
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	93.84
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.8
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.78
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.75
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	93.64
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.63
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	93.63
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.58
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.53
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	93.52
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.52
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	93.52
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.5
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	93.49
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	93.49
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	93.48
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.44
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.42
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	93.33
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.32
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.3
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	93.29
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.27
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.23
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.21
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.19
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	93.12
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	93.09
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.02
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	92.96
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	92.94
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.92
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.88
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.87
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.86
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	92.84
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	92.83
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	92.76
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	92.74
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	92.72
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	92.72
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	92.66
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.66
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.66
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	92.65
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	92.63
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.6
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	92.58
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.57
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.57
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.55
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	92.49
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	92.4

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=8.1e-71  Score=544.67  Aligned_cols=319  Identities=27%  Similarity=0.428  Sum_probs=286.3

Q ss_pred             CCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-cccCCcEEE
Q 016162           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFS   91 (394)
Q Consensus        13 ~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l-~~l~~k~I~   91 (394)
                      ++++|||++.+++++ ..+.|++. +++++.. .....+++++.+.+. ++|+++++..+++++++++++ |+|  |+|+
T Consensus        26 ~~~~kvlv~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~l~~~~~-~~d~li~~~~~~i~~~~l~~~~~~L--k~I~   99 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPA-IEAELRQR-FDLEVNL-EDTVLTPSGIASRAH-GAEVLFVTATEAITAEVIRKLQPGL--KTIA   99 (345)
T ss_dssp             -CCCEEEESSCCCHH-HHHHHHHH-SEEEECT-TCCCCCHHHHHHHTT-TCSEEEECTTSCBCHHHHHHTTTTC--CEEE
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHcc-CCEEEec-CCCCCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHHhhcCCc--eEEE
Confidence            468899999999874 56777665 5776533 233568899999988 499999988789999999998 677  9999


Q ss_pred             EcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016162           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (394)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (394)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+..+.|.+++|||||||
T Consensus       100 ~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGII  179 (345)
T 4g2n_A          100 TLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIF  179 (345)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEE
T ss_pred             EcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999888655567899999999999


Q ss_pred             ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhh
Q 016162          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (394)
Q Consensus       172 GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~  251 (394)
                      |+|+||+.+|+++ ++|||+|++|||+.......           .+     .....++++++++||+|++|+|+|++|+
T Consensus       180 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~-----------~g-----~~~~~~l~ell~~sDvV~l~~Plt~~T~  242 (345)
T 4g2n_A          180 GMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALE-----------EG-----AIYHDTLDSLLGASDIFLIAAPGRPELK  242 (345)
T ss_dssp             SCSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH-----------TT-----CEECSSHHHHHHTCSEEEECSCCCGGGT
T ss_pred             EeChhHHHHHHHH-HHCCCEEEEECCCCcchhhh-----------cC-----CeEeCCHHHHHhhCCEEEEecCCCHHHH
Confidence            9999999999997 89999999999986432111           01     1223589999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHH
Q 016162          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      ++|+++.|+.||+|++|||+|||+++|++||++||++|+++||+||||++||.+++|||++|||++|||+|++|.+++++
T Consensus       243 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~  322 (345)
T 4g2n_A          243 GFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDA  322 (345)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHH
T ss_pred             HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999996678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 016162          332 MATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +...+++|+.+|++|+++.|.|+
T Consensus       323 ~~~~~~~ni~~~l~g~~~~~~V~  345 (345)
T 4g2n_A          323 MGWLLIQGIEALNQSDVPDNLIS  345 (345)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             HHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999988763

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.1e-68  Score=539.13  Aligned_cols=320  Identities=29%  Similarity=0.383  Sum_probs=282.1

Q ss_pred             CCCCceEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcE
Q 016162           11 NPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA   89 (394)
Q Consensus        11 ~~~~~~~vlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~   89 (394)
                      .|+.++|||+++++++. ..+.|++.++ ++++..   ...+++++.+.+.+ +|++++++.+++++++++++|+|  |+
T Consensus        11 ~~~~~~kIl~~~~i~~~-~~~~l~~~g~~~v~~~~---~~~~~~~l~~~~~~-~d~l~v~~~~~i~~~~l~~~p~L--k~   83 (416)
T 3k5p_A           11 LSRDRINVLLLEGISQT-AVEYFKSSGYTNVTHLP---KALDKADLIKAISS-AHIIGIRSRTQLTEEIFAAANRL--IA   83 (416)
T ss_dssp             -CGGGSCEEECSCCCHH-HHHHHHHTTCCCEEECS---SCCCHHHHHHHHTT-CSEEEECSSCCBCHHHHHHCTTC--CE
T ss_pred             CCCCCcEEEEECCCCHH-HHHHHHHCCCcEEEECC---CCCCHHHHHHHccC-CEEEEEcCCCCCCHHHHHhCCCc--EE
Confidence            35578999999999874 5788888887 776532   24688999999984 99999988889999999999998  99


Q ss_pred             EEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016162           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (394)
Q Consensus        90 I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (394)
                      |+++|+|+||||+++|+++||.|+|+|++|+++||||++++||+++|+++.+++.+++|.|..   ..+.+.+++|||+|
T Consensus        84 I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~---~~~~~~el~gktvG  160 (416)
T 3k5p_A           84 VGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEK---TAIGSREVRGKTLG  160 (416)
T ss_dssp             EEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---CCTTCCCSTTCEEE
T ss_pred             EEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccc---cCCCCccCCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999998653   33457899999999


Q ss_pred             EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~  249 (394)
                      |||+|+||+.+|+++ ++|||+|++||++.....              +    ......++++++++||+|++|+|++++
T Consensus       161 IIGlG~IG~~vA~~l-~~~G~~V~~yd~~~~~~~--------------~----~~~~~~sl~ell~~aDvV~lhvPlt~~  221 (416)
T 3k5p_A          161 IVGYGNIGSQVGNLA-ESLGMTVRYYDTSDKLQY--------------G----NVKPAASLDELLKTSDVVSLHVPSSKS  221 (416)
T ss_dssp             EECCSHHHHHHHHHH-HHTTCEEEEECTTCCCCB--------------T----TBEECSSHHHHHHHCSEEEECCCC---
T ss_pred             EEeeCHHHHHHHHHH-HHCCCEEEEECCcchhcc--------------c----CcEecCCHHHHHhhCCEEEEeCCCCHH
Confidence            999999999999996 899999999998743210              0    112356899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-----CccccCCceEEcCCCCCC
Q 016162          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASA  324 (394)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia~~  324 (394)
                      |+++|+++.|++||+|++|||+|||+++|++||++||++|+++||+||||++||++.     +|||++|||++|||+||+
T Consensus       222 T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~  301 (416)
T 3k5p_A          222 TSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGS  301 (416)
T ss_dssp             --CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTC
T ss_pred             HhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999864     589999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccCcccC
Q 016162          325 SKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN  361 (394)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~~~~~~~~  361 (394)
                      |.|+++++...+++|+.+|++|+...++||.  |-+.
T Consensus       302 T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn~--p~~~  336 (416)
T 3k5p_A          302 TEEAQERIGTEVTRKLVEYSDVGSTVGAVNF--PQVQ  336 (416)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCCTTBSSS--CCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhCCCCceeeC--CCcC
Confidence            9999999999999999999999999999983  5543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.5e-68  Score=526.50  Aligned_cols=318  Identities=29%  Similarity=0.430  Sum_probs=284.8

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      +++|||++.+++++ ..+.|++.+ ++.+.. .....+++|+.+.+. ++|+++++..+++++++++++|+|  |+|++.
T Consensus         1 m~~kvlv~~~~~~~-~~~~l~~~~-~v~~~~-~~~~~~~~~~~~~~~-~~d~~i~~~~~~i~~~~l~~~~~L--k~I~~~   74 (330)
T 4e5n_A            1 MLPKLVITHRVHEE-ILQLLAPHC-ELITNQ-TDSTLTREEILRRCR-DAQAMMAFMPDRVDADFLQACPEL--RVIGCA   74 (330)
T ss_dssp             CCCEEEECSCCCHH-HHHHHTTTC-EEECCC-SSSCCCHHHHHHHHT-TCSEEEECTTCCBCHHHHHHCTTC--CEEEES
T ss_pred             CCCEEEEecCCCHH-HHHHHHhCC-eEEEec-CCCCCCHHHHHHHhC-CCeEEEEeCCCCCCHHHHhhCCCC--cEEEEC
Confidence            36789999999874 578887655 665322 233468899999998 499999987789999999999988  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|..|.+ ...|++++|+||||||+
T Consensus        75 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~tvGIIG~  153 (330)
T 4e5n_A           75 LKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGM  153 (330)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCS-CCCCCCSTTCEEEEECC
T ss_pred             CCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCc-cccCCccCCCEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999988875 35688999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+.+|+++ ++|||+|++|||+.......  ..+       |     . ...++++++++||+|++|+|+|++|+++
T Consensus       154 G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~--~~~-------g-----~-~~~~l~ell~~aDvV~l~~P~t~~t~~l  217 (330)
T 4e5n_A          154 GAIGLAMADRL-QGWGATLQYHEAKALDTQTE--QRL-------G-----L-RQVACSELFASSDFILLALPLNADTLHL  217 (330)
T ss_dssp             SHHHHHHHHHT-TTSCCEEEEECSSCCCHHHH--HHH-------T-----E-EECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCCcHhHH--Hhc-------C-----c-eeCCHHHHHhhCCEEEEcCCCCHHHHHH
Confidence            99999999996 89999999999986321111  011       1     1 2358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC-------CCC-CCccccCCceEEcCCCCCCc
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-------PYM-KPGLSEMKNAIVVPHIASAS  325 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~E-------P~~-~~~L~~~~nvilTPHia~~t  325 (394)
                      |+++.|+.||+|++|||+|||+++|++||+++|++|++.||+||||++|       |++ ++|||++|||++|||+|++|
T Consensus       218 i~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t  297 (330)
T 4e5n_A          218 VNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV  297 (330)
T ss_dssp             BCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCC
T ss_pred             hCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCCh
Confidence            9999999999999999999999999999999999999999999999999       975 46999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          326 KWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       326 ~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      .++++++...+++|+.+|++|+++.|.||
T Consensus       298 ~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  326 (330)
T 4e5n_A          298 RAVRLEIERCAAQNILQALAGERPINAVN  326 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCTTBSS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccC
Confidence            99999999999999999999999999997

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.9e-69  Score=533.70  Aligned_cols=310  Identities=29%  Similarity=0.390  Sum_probs=266.0

Q ss_pred             eEEEEeCCCCch-H-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           16 YRVVSTKPMPGT-R-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        16 ~~vlv~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      ||||++....++ . +.+.+++.  .+++........+.+++.     ++|+++++..+++++++++++|+|  |+|++.
T Consensus         1 Mkil~~~~~~~~~p~~~e~l~~~--~~~~~~~~~~~~~~~~l~-----~ad~i~v~~~~~i~~~~l~~~p~L--k~I~~~   71 (334)
T 3kb6_A            1 MNVLFTSVPQEDVPFYQEALKDL--SLKIYTTDVSKVPENELK-----KAELISVFVYDKLTEELLSKMPRL--KLIHTR   71 (334)
T ss_dssp             -CEEECSCCTTHHHHHHHHTTTS--CEEECSSCGGGSCHHHHH-----HCSEEEECTTSCBCHHHHHTCTTC--CEEEES
T ss_pred             CEEEEeCCCcccCHHHHHHHHhC--CcEEEeCCcccCCHHHhc-----CCCEEEEeCCCCCCHHHHhcCCCC--cEEEEC
Confidence            678887532221 1 23334333  444444332334445543     489999998899999999999998  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..|.  ...|++++|+|+||||+
T Consensus        72 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~--~~~~~~l~g~tvGIiG~  149 (334)
T 3kb6_A           72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDS--EILARELNRLTLGVIGT  149 (334)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCG--GGCBCCGGGSEEEEECC
T ss_pred             CcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccccccccccccccccc--ccccceecCcEEEEECc
Confidence            9999999999999999999999999999999999999999999999999999999985543  35688999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+.+|+++ ++|||+|++|||+.......           .+      ..+.+++|++++||+|++|+|+|++|+|+
T Consensus       150 G~IG~~va~~~-~~fg~~v~~~d~~~~~~~~~-----------~~------~~~~~l~ell~~sDivslh~Plt~~T~~l  211 (334)
T 3kb6_A          150 GRIGSRVAMYG-LAFGMKVLCYDVVKREDLKE-----------KG------CVYTSLDELLKESDVISLHVPYTKETHHM  211 (334)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH-----------TT------CEECCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             chHHHHHHHhh-cccCceeeecCCccchhhhh-----------cC------ceecCHHHHHhhCCEEEEcCCCChhhccC
Confidence            99999999996 89999999999986543221           11      13469999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-C---------------ccccCCceEE
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P---------------GLSEMKNAIV  317 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~---------------~L~~~~nvil  317 (394)
                      ||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++. +               |||++|||++
T Consensus       212 i~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvil  291 (334)
T 3kb6_A          212 INEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII  291 (334)
T ss_dssp             BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEE
T ss_pred             cCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEE
Confidence            99999999999999999999999999999999999999999999999999742 1               6899999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      |||+||+|.++++++...+++|+.+|++|++....+|
T Consensus       292 TPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n  328 (334)
T 3kb6_A          292 TPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGN  328 (334)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGG
T ss_pred             CCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence            9999999999999999999999999999998776665

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=8.3e-69  Score=529.34  Aligned_cols=314  Identities=28%  Similarity=0.404  Sum_probs=251.0

Q ss_pred             CCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEE
Q 016162           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (394)
Q Consensus        12 ~~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~   91 (394)
                      +++|++||++.+++++ ..+.|++ ++++.....   ..+++++.+.+. ++|++++++.+++++++++++|+|  |+|+
T Consensus        27 ~~~~~~vl~~~~~~~~-~~~~L~~-~~~v~~~~~---~~~~~~~~~~~~-~~d~li~~~~~~i~~~~l~~~p~L--k~I~   98 (340)
T 4dgs_A           27 RNVKPDLLLVEPMMPF-VMDELQR-NYSVHRLYQ---AADRPALEAALP-SIRAVATGGGAGLSNEWMEKLPSL--GIIA   98 (340)
T ss_dssp             ------CEECSCCCHH-HHHTHHH-HSCCEETTC---GGGHHHHHHHGG-GCCEEEEETTTCBCHHHHHHCSSC--CEEE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHhc-CCcEEEeCC---CCCHHHHHHHhC-CcEEEEEcCCCCCCHHHHhhCCCC--EEEE
Confidence            3568899999999874 5677765 456654322   236788887775 599999988889999999999988  9999


Q ss_pred             EcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016162           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (394)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (394)
                      +.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|..+. ..+.|++++|+|||||
T Consensus        99 ~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~gktiGII  177 (340)
T 4dgs_A           99 INGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGE-QLPLGHSPKGKRIGVL  177 (340)
T ss_dssp             EESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCCCCCTTCEEEEE
T ss_pred             ECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCccccc-CcCccccccCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999975431 1235789999999999


Q ss_pred             ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhh
Q 016162          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (394)
Q Consensus       172 GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~  251 (394)
                      |+|+||+.+|+++ ++|||+|++|||++...                   .......+++|++++||+|++|+|++++|+
T Consensus       178 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~~~~~~~sl~ell~~aDvVil~vP~t~~t~  237 (340)
T 4dgs_A          178 GLGQIGRALASRA-EAFGMSVRYWNRSTLSG-------------------VDWIAHQSPVDLARDSDVLAVCVAASAATQ  237 (340)
T ss_dssp             CCSHHHHHHHHHH-HTTTCEEEEECSSCCTT-------------------SCCEECSSHHHHHHTCSEEEECC-------
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCcccc-------------------cCceecCCHHHHHhcCCEEEEeCCCCHHHH
Confidence            9999999999997 79999999999986431                   011234689999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHH
Q 016162          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      ++++++.|+.||+|++|||+|||+++|++||++||++|+++||+||||++||++++|||++|||++|||+|++|.+++++
T Consensus       238 ~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~  317 (340)
T 4dgs_A          238 NIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMA  317 (340)
T ss_dssp             ---CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHH
T ss_pred             HHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 016162          332 MATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +...+++|+.+|++|+++.|.||
T Consensus       318 ~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          318 MGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999886

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=5.1e-68  Score=535.32  Aligned_cols=319  Identities=24%  Similarity=0.328  Sum_probs=277.0

Q ss_pred             CCCceEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEE
Q 016162           12 PNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (394)
Q Consensus        12 ~~~~~~vlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I   90 (394)
                      |+.+||||+++++++. ..+.|++.++ ++++...   ..+++++.+.+. ++|++++++.+.+++++++++|+|  |+|
T Consensus         1 ~~~~~kil~~~~~~~~-~~~~l~~~~~~~v~~~~~---~~~~~~l~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L--k~I   73 (404)
T 1sc6_A            1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFHKG---ALDDEQLKESIR-DAHFIGLRSRTHLTEDVINAAEKL--VAI   73 (404)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEECSS---CCCHHHHHHHTT-SCSEEEECSSCCBCHHHHHHCSSC--CEE
T ss_pred             CCCceEEEEeCCCCHH-HHHHHHhCCCcEEEEcCC---CCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--cEE
Confidence            3456789999988764 5788888777 6765322   358899998887 499999998889999999999998  999


Q ss_pred             EEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 016162           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (394)
Q Consensus        91 ~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGI  170 (394)
                      +++|+|+||||+++|+++||.|+|+|++|+++||||++++||+++|+++++++.+++|.|..   ..+.|.+++|||+||
T Consensus        74 ~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~---~~~~~~el~gktlGi  150 (404)
T 1sc6_A           74 GAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNK---LAAGSFEARGKKLGI  150 (404)
T ss_dssp             EECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEE
T ss_pred             EECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccc---cCCCccccCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999998643   334678999999999


Q ss_pred             EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (394)
Q Consensus       171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t  250 (394)
                      ||+|+||+.+|+++ ++|||+|++|||+....              .+    ......+++|++++||+|++|+|++++|
T Consensus       151 IGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~--------------~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t  211 (404)
T 1sc6_A          151 IGYGHIGTQLGILA-ESLGMYVYFYDIENKLP--------------LG----NATQVQHLSDLLNMSDVVSLHVPENPST  211 (404)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCCC--------------CT----TCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred             EeECHHHHHHHHHH-HHCCCEEEEEcCCchhc--------------cC----CceecCCHHHHHhcCCEEEEccCCChHH
Confidence            99999999999997 89999999999975321              01    1123458999999999999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-----CCccccCCceEEcCCCCCCc
Q 016162          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIASAS  325 (394)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-----~~~L~~~~nvilTPHia~~t  325 (394)
                      +++|+++.|++||+|++|||+|||+++|++||+++|++|+++||+||||+.||++     ++|||++|||++|||+|++|
T Consensus       212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T  291 (404)
T 1sc6_A          212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST  291 (404)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCS
T ss_pred             HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999986     35899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCccCcccC
Q 016162          326 KWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN  361 (394)
Q Consensus       326 ~~~~~~~~~~~~~ni~~~l~g~~~~~~v~~~~~~~~  361 (394)
                      .|+++++...+++|+.+|++|+++.|.|| . |.+.
T Consensus       292 ~ea~~~~~~~~~~nl~~~l~g~~~~~~vn-~-p~~~  325 (404)
T 1sc6_A          292 QEAQENIGLEVAGKLIKYSDNGSTLSAVN-F-PEVS  325 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCTTBSS-S-CCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcceec-c-cccc
Confidence            99999999999999999999999999997 4 6553

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=8.5e-67  Score=515.56  Aligned_cols=313  Identities=27%  Similarity=0.397  Sum_probs=270.4

Q ss_pred             eEEEEeCCCCc-hHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHH-HHHHhcccCCcEEEE
Q 016162           16 YRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET-LFAALSRAGGKAFSN   92 (394)
Q Consensus        16 ~~vlv~~~~~~-~~~~~~l-~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~-~l~~l~~l~~k~I~~   92 (394)
                      |||++....+. ..+++.+ ++.++++......   .+ +|+.+.+. ++|+++++..++++++ +++++|+.++|+|++
T Consensus         2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-~~~~~~~~-~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (343)
T 2yq5_A            2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA---LT-SATVDLAE-GCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGL   76 (343)
T ss_dssp             CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC---CS-TTGGGGGT-TCSEEEECCSSCBCCHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEecCcccHHHHHHHHHhCCeEEEECCCC---CC-HHHHHHhc-CCcEEEEcCCCCcCHHHHHHhccccCceEEEE
Confidence            67888763332 2344443 4567777654432   23 56667776 5999999988899999 999998655699999


Q ss_pred             cccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHH-cCccCCCCCCcccccccCCCeEEEE
Q 016162           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR-AGLYDGWLPNLFVGNLLKGQTVGVI  171 (394)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~-~g~~~~w~~~~~~g~~l~gktvGII  171 (394)
                      .|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.++ +|.|. |.. .+.|++++|+|||||
T Consensus        77 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~-~~~~~~l~gktvgIi  154 (343)
T 2yq5_A           77 RIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPS-NLISNEIYNLTVGLI  154 (343)
T ss_dssp             SSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCG-GGCBCCGGGSEEEEE
T ss_pred             CceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-ccc-CCCccccCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999999999 99885 743 356889999999999


Q ss_pred             ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhh
Q 016162          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (394)
Q Consensus       172 GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~  251 (394)
                      |+|+||+++|+++ ++|||+|++|||+.....+            .+      ....++++++++||+|++|+|+|++|+
T Consensus       155 GlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~------------~~------~~~~~l~ell~~aDvV~l~~Plt~~t~  215 (343)
T 2yq5_A          155 GVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFE------------PF------LTYTDFDTVLKEADIVSLHTPLFPSTE  215 (343)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCGGGT------------TT------CEECCHHHHHHHCSEEEECCCCCTTTT
T ss_pred             ecCHHHHHHHHHH-hhCCCEEEEECCChhhhhh------------cc------ccccCHHHHHhcCCEEEEcCCCCHHHH
Confidence            9999999999997 8999999999998754111            01      123599999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC--CCCC------------ccccCCceEE
Q 016162          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKP------------GLSEMKNAIV  317 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP--~~~~------------~L~~~~nvil  317 (394)
                      ++|+++.|+.||+|++|||+|||+++|++||++||++|+++||+||||++||  ++.+            |||++|||++
T Consensus       216 ~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvil  295 (343)
T 2yq5_A          216 NMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVI  295 (343)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEE
T ss_pred             HHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999  3332            7999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      |||+|++|.++++++...+++|+.+|++|+++.|.||
T Consensus       296 TPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~v~  332 (343)
T 2yq5_A          296 TPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSIVN  332 (343)
T ss_dssp             CSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC-
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHcCCCCCceEC
Confidence            9999999999999999999999999999999999997

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.1e-66  Score=509.08  Aligned_cols=306  Identities=23%  Similarity=0.269  Sum_probs=270.1

Q ss_pred             CceEEEEeCCCCchHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEE
Q 016162           14 GKYRVVSTKPMPGTRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~   92 (394)
                      .|||||++.+..+ .|.+.| ++..+++++...    .+.+++.+.+.+ +|+++++.  .+++++++++|+|  |+|++
T Consensus         4 ~~mkili~~~~~~-~~~~~L~~~~~p~~~~~~~----~~~~~~~~~~~~-ad~li~~~--~~~~~~l~~~~~L--k~I~~   73 (324)
T 3hg7_A            4 SQRTLLLLSQDNA-HYERLLKAAHLPHLRILRA----DNQSDAEKLIGE-AHILMAEP--ARAKPLLAKANKL--SWFQS   73 (324)
T ss_dssp             CCEEEEEESTTHH-HHHHHHHHSCCTTEEEEEC----SSHHHHHHHGGG-CSEEEECH--HHHGGGGGGCTTC--CEEEE
T ss_pred             cccEEEEecCCCH-HHHHHHhhccCCCeEEEeC----CChhHHHHHhCC-CEEEEECC--CCCHHHHhhCCCc--eEEEE
Confidence            4589999999976 588889 666667776543    256788888874 99999853  4567889999988  99999


Q ss_pred             cccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016162           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (394)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (394)
                      .|+|+|+||++++.+ ||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..     ..+.+++|+||||||
T Consensus        74 ~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-----~~~~~l~g~tvGIIG  147 (324)
T 3hg7_A           74 TYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS-----HPYQGLKGRTLLILG  147 (324)
T ss_dssp             SSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC-----CCCCCSTTCEEEEEC
T ss_pred             CCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcC-----CCCcccccceEEEEE
Confidence            999999999998764 99999999999999999999999999999999999999998643     246799999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (394)
Q Consensus       173 lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~  252 (394)
                      +|+||+++|+++ ++|||+|++|||++....              .. . ......++++++++||+|++|+|+|++|++
T Consensus       148 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~~-~-~~~~~~~l~ell~~aDvV~l~lPlt~~T~~  210 (324)
T 3hg7_A          148 TGSIGQHIAHTG-KHFGMKVLGVSRSGRERA--------------GF-D-QVYQLPALNKMLAQADVIVSVLPATRETHH  210 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCCT--------------TC-S-EEECGGGHHHHHHTCSEEEECCCCCSSSTT
T ss_pred             ECHHHHHHHHHH-HhCCCEEEEEcCChHHhh--------------hh-h-cccccCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            999999999997 899999999999864310              00 0 112346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHH
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      +|+++.|+.||+|++|||+|||+++|++||++||++|+++||+||||++||++. +|||++|||++|||+||.|.+  ++
T Consensus       211 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~  288 (324)
T 3hg7_A          211 LFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DD  288 (324)
T ss_dssp             SBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HH
T ss_pred             HhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HH
Confidence            999999999999999999999999999999999999999999999999999864 699999999999999999976  57


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 016162          332 MATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +...+++|+.+|++|+++.|.||
T Consensus       289 ~~~~~~~nl~~~~~G~~~~~~V~  311 (324)
T 3hg7_A          289 VAQIFVRNYIRFIDGQPLDGKID  311 (324)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             HHHHHHHHHHHHHcCCCCcceEC
Confidence            89999999999999999999997

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=1.6e-65  Score=508.53  Aligned_cols=315  Identities=28%  Similarity=0.404  Sum_probs=274.4

Q ss_pred             ceEEEEeCCCCchH----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEe-cCCccccHHHHHHhcccCCcE
Q 016162           15 KYRVVSTKPMPGTR----WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-QLTEDWGETLFAALSRAGGKA   89 (394)
Q Consensus        15 ~~~vlv~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~-~~~~~i~~~~l~~l~~l~~k~   89 (394)
                      +|||++.+......    ..+.+  .+++++++..  ...+++++.+.+.+ +|++++ +..+++++++++++|+|  |+
T Consensus         2 smki~~~d~~~~~~~~~~~~~~l--~~~~v~~~~~--~~~~~~~l~~~~~~-ad~li~~~~~~~~~~~~l~~~~~L--k~   74 (352)
T 3gg9_A            2 SLKIAVLDDYQDAVRKLDCFSLL--QDHEVKVFNN--TVKGVGQLAARVAD-VEALVLIRERTRVTRQLLDRLPKL--KI   74 (352)
T ss_dssp             CCEEEECCCTTCCGGGSGGGGGG--TTSEEEECCS--CCCSHHHHHHHTTT-CSEEEECTTSSCBCHHHHTTCTTC--CE
T ss_pred             ceEEEEEcCccccchhhhhhhhh--cCceEEEecC--CCCCHHHHHHHhcC-CeEEEEeCCCCCCCHHHHhhCCCC--eE
Confidence            48899987765421    11333  3467776543  22478899998874 999998 56788999999999988  99


Q ss_pred             EEEcccCc----cccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCC-------CCCCcc
Q 016162           90 FSNMAVGY----NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-------WLPNLF  158 (394)
Q Consensus        90 I~~~g~G~----d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~-------w~~~~~  158 (394)
                      |++.|+|+    |+||+++|+++||.|+|+||+ +.+||||++++||+++|++..+++.+++|.|..       |.+...
T Consensus        75 I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~  153 (352)
T 3gg9_A           75 ISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFG  153 (352)
T ss_dssp             EEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTT
T ss_pred             EEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccc
Confidence            99999999    999999999999999999999 999999999999999999999999999999853       333334


Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .|++++|+||||||+|+||+++|+++ ++|||+|++|||+......          ...|     +....++++++++||
T Consensus       154 ~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~----------~~~g-----~~~~~~l~ell~~aD  217 (352)
T 3gg9_A          154 IGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVLVWGRENSKERA----------RADG-----FAVAESKDALFEQSD  217 (352)
T ss_dssp             SBCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSHHHHHHH----------HHTT-----CEECSSHHHHHHHCS
T ss_pred             cCccCCCCEEEEEeECHHHHHHHHHH-HhCCCEEEEECCCCCHHHH----------HhcC-----ceEeCCHHHHHhhCC
Confidence            67899999999999999999999997 8999999999998643211          1112     123358999999999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEE
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIV  317 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvil  317 (394)
                      +|++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+++||+||||++||++ ++|||++|||++
T Consensus       218 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvil  297 (352)
T 3gg9_A          218 VLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC  297 (352)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEE
T ss_pred             EEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999986 579999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      |||+|+.|.++++++...+++|+.+|++|+|+ |.||
T Consensus       298 TPHia~~t~e~~~~~~~~~~~ni~~~~~G~p~-~~Vn  333 (352)
T 3gg9_A          298 TPHIGYVERESYEMYFGIAFQNILDILQGNVD-SVAN  333 (352)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCT-TBSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-cccC
Confidence            99999999999999999999999999999875 7886

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=6.6e-66  Score=506.06  Aligned_cols=307  Identities=20%  Similarity=0.230  Sum_probs=267.0

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHH-HHhcccCCcEEEEc
Q 016162           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLF-AALSRAGGKAFSNM   93 (394)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l-~~l~~l~~k~I~~~   93 (394)
                      ++|||++.++++ ++.+.|++.++++++....+  .+.+++    . ++|+++++.. .+ ++++ +++|+|  |+|++.
T Consensus         1 m~kil~~~~~~~-~~~~~L~~~~~~~~~~~~~~--~~~~~~----~-~ad~l~~~~~-~~-~~~l~~~~~~L--k~I~~~   68 (324)
T 3evt_A            1 MSLVLMAQATKP-EQLQQLQTTYPDWTFKDAAA--VTAADY----D-QIEVMYGNHP-LL-KTILARPTNQL--KFVQVI   68 (324)
T ss_dssp             -CEEEECSCCCH-HHHHHHHHHCTTCEEEETTS--CCTTTG----G-GEEEEESCCT-HH-HHHHHSTTCCC--CEEECS
T ss_pred             CcEEEEecCCCH-HHHHHHHhhCCCeEEecCCc--cChHHh----C-CcEEEEECCc-Ch-HHHHHhhCCCc--eEEEEC
Confidence            368999999987 47889988776655543221  233333    3 4898887754 46 8888 689988  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHH-HHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA-DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~-~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (394)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+ ++.+++|.|..   .. .+++++|+||||||
T Consensus        69 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~---~~-~~~~l~gktvGIiG  144 (324)
T 3evt_A           69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWAL---PM-TTSTLTGQQLLIYG  144 (324)
T ss_dssp             SSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSC---SS-CCCCSTTCEEEEEC
T ss_pred             CccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCccc---CC-CCccccCCeEEEEC
Confidence            999999999999999999999999999999999999999999999999 88999998643   22 47899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (394)
Q Consensus       173 lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~  252 (394)
                      +|+||+++|+++ ++|||+|++|||+.....              .. .. .....++++++++||+|++|+|+|++|++
T Consensus       145 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~~-~~-~~~~~~l~ell~~aDvV~l~lPlt~~t~~  207 (324)
T 3evt_A          145 TGQIGQSLAAKA-SALGMHVIGVNTTGHPAD--------------HF-HE-TVAFTATADALATANFIVNALPLTPTTHH  207 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEEESSCCCCT--------------TC-SE-EEEGGGCHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HhCCCEEEEECCCcchhH--------------hH-hh-ccccCCHHHHHhhCCEEEEcCCCchHHHH
Confidence            999999999997 899999999999864310              00 00 12245899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHH
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      +|+++.|+.||+|++|||+|||+++|++||++||++|++.||+||||++||++. +|||++|||++|||+||.|.+++++
T Consensus       208 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~  287 (324)
T 3evt_A          208 LFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRAT  287 (324)
T ss_dssp             CBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHH
T ss_pred             hcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999864 7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC-CCCCCCCC
Q 016162          332 MATLAALNVLGKIKG-YPIWGNPN  354 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g-~~~~~~v~  354 (394)
                      +...+++|+.+|++| +++.|.||
T Consensus       288 ~~~~~~~nl~~~l~~~~~~~n~V~  311 (324)
T 3evt_A          288 VFPIFAANFAQFVKDGTLVRNQVD  311 (324)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSCBCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEC
Confidence            999999999999965 56899997

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.9e-65  Score=507.66  Aligned_cols=312  Identities=21%  Similarity=0.240  Sum_probs=269.9

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhcccCCcEEEEc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~--~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      +++|....... ...+.|++.|+++.+.....  .+.+++.+.+.+ +|++|++.  +..+++++++++|+|  |+|++.
T Consensus        20 ~~~lg~~~~~l-~~~~~L~~~g~ev~~~~~~~--~~~~~~~~~~~~-ad~li~~~~~~~~~~~~~l~~~p~L--k~i~~~   93 (351)
T 3jtm_A           20 PNFLGCVENAL-GIRDWLESQGHQYIVTDDKE--GPDCELEKHIPD-LHVLISTPFHPAYVTAERIKKAKNL--KLLLTA   93 (351)
T ss_dssp             TTCCSSTTTGG-GCHHHHHHTTCEEEEESCCS--STTSHHHHHTTT-CSEEEECTTSCCCBCHHHHHHCSSC--CEEEES
T ss_pred             CCEEEeccchH-HHHHHHHHCCCEEEEeCCCC--CCHHHHHHHhCC-CEEEEEccCCCCCCCHHHHhhCCCC--eEEEEe
Confidence            44555544433 24677888899987665433  255688888874 99999865  356999999999988  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|... .....+.+|+|+||||||+
T Consensus        94 g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIG~  172 (351)
T 3jtm_A           94 GIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVA-GIAYRAYDLEGKTIGTVGA  172 (351)
T ss_dssp             SSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHH-HHHTTCCCSTTCEEEEECC
T ss_pred             CeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccc-cccCCcccccCCEEeEEEe
Confidence            999999999999999999999999999999999999999999999999999999986421 1112467999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+.+|+++ ++|||+|++|||+.......  .       ..|     +....++++++++||+|++|+|+|++|+++
T Consensus       173 G~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~--~-------~~g-----~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  237 (351)
T 3jtm_A          173 GRIGKLLLQRL-KPFGCNLLYHDRLQMAPELE--K-------ETG-----AKFVEDLNEMLPKCDVIVINMPLTEKTRGM  237 (351)
T ss_dssp             SHHHHHHHHHH-GGGCCEEEEECSSCCCHHHH--H-------HHC-----CEECSCHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEeCCCccCHHHH--H-------hCC-----CeEcCCHHHHHhcCCEEEECCCCCHHHHHh
Confidence            99999999997 89999999999986332110  1       112     123468999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHH
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGM  332 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~  332 (394)
                      |+++.|+.||+|++|||+|||+++|++||++||++|++.||+||||++||++. +|||++|||++|||+||.|.+++.++
T Consensus       238 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~  317 (351)
T 3jtm_A          238 FNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRY  317 (351)
T ss_dssp             BSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHH
T ss_pred             hcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999864 69999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 016162          333 ATLAALNVLGKIKGYPI  349 (394)
Q Consensus       333 ~~~~~~ni~~~l~g~~~  349 (394)
                      ...+++|+.+|++|+++
T Consensus       318 ~~~~~~nl~~~~~g~~~  334 (351)
T 3jtm_A          318 AAGTKDMLERYFKGEDF  334 (351)
T ss_dssp             HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999963

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.6e-64  Score=495.96  Aligned_cols=311  Identities=29%  Similarity=0.444  Sum_probs=270.3

Q ss_pred             CCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEE
Q 016162           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (394)
Q Consensus        13 ~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~   92 (394)
                      ++++||++++++++. ..+.|++.++++....    ..+++++.+.+. ++|+++++..+++++++++++|+|  |+|++
T Consensus        24 ~~~~~vli~~~~~~~-~~~~l~~~~~~v~~~~----~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~   95 (335)
T 2g76_A           24 ANLRKVLISDSLDPC-CRKILQDGGLQVVEKQ----NLSKEELIAELQ-DCEGLIVRSATKVTADVINAAEKL--QVVGR   95 (335)
T ss_dssp             --CCEEEECSCCCHH-HHHHHHHHTCEEEECC----SCCHHHHHHHGG-GCSEEEECSSSCBCHHHHHHCSSC--CEEEE
T ss_pred             ccceEEEEcCCCCHH-HHHHHHhCCCEEEECC----CCCHHHHHHHhc-CceEEEEcCCCCCCHHHHhhCCCC--cEEEE
Confidence            344689999888763 5677777777765432    247889988887 499999988778999999999988  99999


Q ss_pred             cccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016162           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (394)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (394)
                      .|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.   +..+.|.+++|+||||||
T Consensus        96 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~---~~~~~~~~l~g~tvgIIG  172 (335)
T 2g76_A           96 AGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE---RKKFMGTELNGKTLGILG  172 (335)
T ss_dssp             SSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC---TGGGCBCCCTTCEEEEEC
T ss_pred             CCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCC---ccCCCCcCCCcCEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999864   333457899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (394)
Q Consensus       173 lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~  252 (394)
                      +|+||+.+|+++ ++|||+|++|||+......   .       ..|.      ...++++++++||+|++|+|++++|++
T Consensus       173 lG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g~------~~~~l~ell~~aDvV~l~~P~t~~t~~  235 (335)
T 2g76_A          173 LGRIGREVATRM-QSFGMKTIGYDPIISPEVS---A-------SFGV------QQLPLEEIWPLCDFITVHTPLLPSTTG  235 (335)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECSSSCHHHH---H-------HTTC------EECCHHHHGGGCSEEEECCCCCTTTTT
T ss_pred             ECHHHHHHHHHH-HHCCCEEEEECCCcchhhh---h-------hcCc------eeCCHHHHHhcCCEEEEecCCCHHHHH
Confidence            999999999997 7999999999998754211   1       1121      125899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHH
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  332 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~  332 (394)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||+.||.+++|||++||||+|||++++|.++++++
T Consensus       236 li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~  315 (335)
T 2g76_A          236 LLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRC  315 (335)
T ss_dssp             SBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHH
T ss_pred             hhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999977789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCC
Q 016162          333 ATLAALNVLGKIKGYPIWG  351 (394)
Q Consensus       333 ~~~~~~ni~~~l~g~~~~~  351 (394)
                      ...+++|+.+|++|+++.|
T Consensus       316 ~~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          316 GEEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             HHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHcCCCCCC
Confidence            9999999999999998765

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=1.6e-64  Score=502.53  Aligned_cols=312  Identities=22%  Similarity=0.309  Sum_probs=261.5

Q ss_pred             ceEEEEeCCCCc-------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCC
Q 016162           15 KYRVVSTKPMPG-------TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG   87 (394)
Q Consensus        15 ~~~vlv~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~   87 (394)
                      ..++++..+.+.       ++..+.|++. +++... .   ..+++|+.+.+.++++++++.  +++++++++++|+|  
T Consensus        27 ~r~ivll~~~~~~~~~~~~~~~~~~L~~~-~~v~~~-~---~~~~~e~~~~~~~~~~~i~~~--~~i~~~~l~~~p~L--   97 (365)
T 4hy3_A           27 ERPLAISAPEPRSLDLIFSDEARAALHSK-YEIVEA-D---PENIAGLGDDILGRARYIIGQ--PPLSAETLARMPAL--   97 (365)
T ss_dssp             -CCEEEEECTTSCHHHHCCHHHHHHHHHH-SEEEEC-C---GGGGGGSCTTHHHHEEEEEEC--CCCCHHHHTTCTTC--
T ss_pred             CCCEEEEcCCcccccccCCHHHHHHHhCC-cEEEEC-C---CCChHHHHHHhhCCeEEEEeC--CCCCHHHHhhCCCC--
Confidence            345666655532       2245677665 566422 1   124455443322247777753  57999999999998  


Q ss_pred             cEEEEc-ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCC-cccccccCC
Q 016162           88 KAFSNM-AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN-LFVGNLLKG  165 (394)
Q Consensus        88 k~I~~~-g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~-~~~g~~l~g  165 (394)
                      |+|++. |+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|. |... .+.+.+++|
T Consensus        98 k~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~~~~~l~g  176 (365)
T 4hy3_A           98 RSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTEL-WGGEGNASARLIAG  176 (365)
T ss_dssp             CEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCC-CSSSSTTSCCCSSS
T ss_pred             eEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcc-ccccccccccccCC
Confidence            999975 8999999999999999999999999999999999999999999999999999999975 6432 346789999


Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      +||||||+|+||+.+|+++ ++|||+|++|||+.......          ..|.      ...++++++++||+|++|+|
T Consensus       177 ktvGIIGlG~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g~------~~~~l~ell~~aDvV~l~~P  239 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVL-SGFRARIRVFDPWLPRSMLE----------ENGV------EPASLEDVLTKSDFIFVVAA  239 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHH-TTSCCEEEEECSSSCHHHHH----------HTTC------EECCHHHHHHSCSEEEECSC
T ss_pred             CEEEEecCCcccHHHHHhh-hhCCCEEEEECCCCCHHHHh----------hcCe------eeCCHHHHHhcCCEEEEcCc
Confidence            9999999999999999997 89999999999986432111          1121      23689999999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCCCCCC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASA  324 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~  324 (394)
                      ++++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+ |+||||++||++ ++|||++|||++|||+||+
T Consensus       240 lt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~  318 (365)
T 4hy3_A          240 VTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGA  318 (365)
T ss_dssp             SSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSC
T ss_pred             CCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccC
Confidence            99999999999999999999999999999999999999999999998 999999999986 4799999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          325 SKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      |.++++++...+++||.+|++|+++.+.+|
T Consensus       319 t~e~~~~~~~~~~~ni~~~~~G~~~~~~vn  348 (365)
T 4hy3_A          319 LDSAFKKMGDMVLEDMDLMDRGLPPMRCKR  348 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCCCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence            999999999999999999999999999887

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=5.6e-63  Score=483.39  Aligned_cols=309  Identities=38%  Similarity=0.575  Sum_probs=277.0

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      +|||++.+++++ ..+.|++.++++++....  ..+.+++.+.+. ++|+++++..+++++++++++|+|  |+|++.|+
T Consensus         1 ~~vl~~~~~~~~-~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~i~~~~~   74 (311)
T 2cuk_A            1 MRVLVTRTLPGK-ALDRLRERGLEVEVHRGL--FLPKAELLKRVE-GAVGLIPTVEDRIDAEVMDRAKGL--KVIACYSV   74 (311)
T ss_dssp             CEEEESSCCSSS-TTHHHHHTTCEEEECCSS--CCCHHHHHHHHT-TCSEEECCTTSCBCHHHHHHSTTC--CEEECSSS
T ss_pred             CEEEEeCCCCHH-HHHHHHhcCCeEEEecCC--CCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--eEEEECCc
Confidence            478888887764 467787777787654322  347889988887 499999887778999999999988  99999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (394)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+..+.|.+++|+||||||+|+
T Consensus        75 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           75 GVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             CCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             CccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999999999999999999999999999999999999987664433457899999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhccc
Q 016162          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (394)
Q Consensus       176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~  255 (394)
                      ||+.+|+++ ++|||+|++|||+....                .  .   ...++++++++||+|++|+|++++|+++++
T Consensus       155 IG~~~A~~l-~~~G~~V~~~d~~~~~~----------------~--~---~~~~l~ell~~aDvV~l~~p~~~~t~~li~  212 (311)
T 2cuk_A          155 IGQAVAKRA-LAFGMRVVYHARTPKPL----------------P--Y---PFLSLEELLKEADVVSLHTPLTPETHRLLN  212 (311)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCSS----------------S--S---CBCCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCCccc----------------c--c---ccCCHHHHHhhCCEEEEeCCCChHHHhhcC
Confidence            999999997 79999999999986431                0  1   246899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCCCCCCcHHHHHHHHH
Q 016162          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMAT  334 (394)
Q Consensus       256 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~~~~  334 (394)
                      ++.|+.||+|+++||+|||+++|+++|+++|+ |++.||++|||+.||++ ++|||++||||+|||+++.|.+++.++..
T Consensus       213 ~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  291 (311)
T 2cuk_A          213 RERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAE  291 (311)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999 99999999999999965 57999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCC
Q 016162          335 LAALNVLGKIKGYPIWGNP  353 (394)
Q Consensus       335 ~~~~ni~~~l~g~~~~~~v  353 (394)
                      .+++|+.+|++|+++.|.|
T Consensus       292 ~~~~nl~~~~~g~~~~~~v  310 (311)
T 2cuk_A          292 VAVENLLAVLEGREPPNPV  310 (311)
T ss_dssp             HHHHHHHHHHTTCCCSSBC
T ss_pred             HHHHHHHHHHcCCCCCCcc
Confidence            9999999999999877654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=3.7e-63  Score=489.03  Aligned_cols=313  Identities=28%  Similarity=0.405  Sum_probs=268.9

Q ss_pred             eEEEEeCCCC-chHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEE
Q 016162           16 YRVVSTKPMP-GTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (394)
Q Consensus        16 ~~vlv~~~~~-~~~~~~~l~~~--~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~   92 (394)
                      |||++....+ +..+++.+.+.  ++++.+....    ..+++.+.+. ++|+++++..+++++++++++|+.++|+|++
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LTPETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSL   76 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CCTTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----CcHHHHHHhc-CCcEEEEcCCCCCCHHHHHhccccCCeEEEE
Confidence            4677754322 23466777653  4566543221    2246666666 5999999877789999999999833499999


Q ss_pred             cccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016162           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (394)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (394)
                      .|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|. |..  ..+.+++|+||||||
T Consensus        77 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~--~~~~~l~g~~vgIiG  153 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVG  153 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEEC
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc-cCC--cccccCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999985 642  467899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (394)
Q Consensus       173 lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~  252 (394)
                      +|+||+.+|+++ ++|||+|++||++.......            .     .....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvV~l~~p~~~~t~~  215 (333)
T 1j4a_A          154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK------------K-----GYYVDSLDDLYKQADVISLHVPDVPANVH  215 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH------------T-----TCBCSCHHHHHHHCSEEEECSCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhHHh------------h-----CeecCCHHHHHhhCCEEEEcCCCcHHHHH
Confidence            999999999997 79999999999987643110            0     01123899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CC--------C----ccccCCceEEc
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEMKNAIVV  318 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~--~~--------~----~L~~~~nvilT  318 (394)
                      +|+++.|+.||+|+++||+|||+++|+++|+++|++|+++||+||||++||.  +.        +    |||++|||++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993  22        2    59999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          319 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       319 PHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      ||+|++|.++++++...+++|+.+|++|+++.|.||
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (333)
T 1j4a_A          296 PKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVK  331 (333)
T ss_dssp             SSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCC
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence            999999999999999999999999999999998886

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=3.2e-63  Score=489.12  Aligned_cols=313  Identities=21%  Similarity=0.285  Sum_probs=270.0

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEE
Q 016162           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (394)
Q Consensus        16 ~~vlv~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~   92 (394)
                      |||+++.  +... .+++.+.+ .++++.+...   ..+++++.+.+. ++|+++++..+.+++++++++|+.++|+|++
T Consensus         1 mki~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   75 (331)
T 1xdw_A            1 MKVLCYGVRDVEL-PIFEACNKEFGYDIKCVPD---YLNTKETAEMAA-GFDAVILRGNCFANKQNLDIYKKLGVKYILT   75 (331)
T ss_dssp             CEEEECSCCTTTH-HHHHHHGGGTCCEEEECSC---CSCSHHHHHTTT-TCSEEEECTTCCBCHHHHHHHHHHTCCEEEE
T ss_pred             CEEEEEecCccCH-HHHHHHHHhcCeEEEECCC---CCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHhhCcccCceEEEE
Confidence            4677754  3333 46677754 4555543221   234577777777 4999999877789999999999833499999


Q ss_pred             cccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016162           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (394)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (394)
                      .|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|. |.. ...|.++.|+||||||
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  153 (331)
T 1xdw_A           76 RTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK-VDA-FMFSKEVRNCTVGVVG  153 (331)
T ss_dssp             SSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC-CCS-TTCCCCGGGSEEEEEC
T ss_pred             ccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc-ccc-CcCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999985 522 2357899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (394)
Q Consensus       173 lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~  252 (394)
                      +|+||+.+|+++ ++|||+|++|||+.....+             ..     ....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~-------------~~-----~~~~~l~ell~~aDvV~~~~p~t~~t~~  214 (331)
T 1xdw_A          154 LGRIGRVAAQIF-HGMGATVIGEDVFEIKGIE-------------DY-----CTQVSLDEVLEKSDIITIHAPYIKENGA  214 (331)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCSCT-------------TT-----CEECCHHHHHHHCSEEEECCCCCTTTCC
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCccHHHH-------------hc-----cccCCHHHHHhhCCEEEEecCCchHHHH
Confidence            999999999997 7999999999998753100             00     1235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CC--------C----ccccC-CceEE
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEM-KNAIV  317 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~--~~--------~----~L~~~-~nvil  317 (394)
                      +|+++.|+.||+|+++||+|||+++|+++|+++|++|+++||+||||++||+  +.        +    |||++ |||++
T Consensus       215 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvil  294 (331)
T 1xdw_A          215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI  294 (331)
T ss_dssp             SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEE
T ss_pred             HhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999994  21        2    69999 99999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      |||+|++|.+++.++...+++|+.+|++|+++.|.||
T Consensus       295 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (331)
T 1xdw_A          295 TPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKIK  331 (331)
T ss_dssp             CCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTBCC
T ss_pred             cCccccChHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999999888775

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3.8e-62  Score=479.32  Aligned_cols=312  Identities=28%  Similarity=0.471  Sum_probs=274.2

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcc-cCCcEEEEcc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSR-AGGKAFSNMA   94 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~-l~~k~I~~~g   94 (394)
                      +||+++.+++++ ..+.|++ .+++++... ....+++++.+.+.+ +|+++++..+.+++++++++|+ |  |+|++.|
T Consensus         2 ~~vl~~~~~~~~-~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~~L--k~I~~~~   75 (320)
T 1gdh_A            2 KKILITWPLPEA-AMARARE-SYDVIAHGD-DPKITIDEMIETAKS-VDALLITLNEKCRKEVIDRIPENI--KCISTYS   75 (320)
T ss_dssp             CEEEESSCCCHH-HHHHHHT-TSEEEECCS-TTCCCHHHHHHHHTT-CSEEEEETTSCBCHHHHHHSCTTC--CEEEEES
T ss_pred             cEEEEcCCCCHH-HHHHHHh-cCCEEEecC-CCCCCHHHHHHHhcC-CEEEEECCCCCCCHHHHHhCCccc--eEEEECC
Confidence            478888887764 5677765 356654332 223578899988874 9999998777899999999998 7  9999999


Q ss_pred             cCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016162           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (394)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG  174 (394)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+..+.|.+++|+||||||+|
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  155 (320)
T 1gdh_A           76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG  155 (320)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             cccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcC
Confidence            99999999999999999999999999999999999999999999999999999998766544456789999999999999


Q ss_pred             hHHHHHHHHHHhcCCcEEEEEcC-chhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          175 RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       175 ~IG~~vA~~la~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      +||+.+|+++ ++|||+|++||+ +.......   .       .|.     ....++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~---~-------~g~-----~~~~~l~ell~~aDvVil~~p~~~~t~~~  219 (320)
T 1gdh_A          156 SIGQALAKRA-QGFDMDIDYFDTHRASSSDEA---S-------YQA-----TFHDSLDSLLSVSQFFSLNAPSTPETRYF  219 (320)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECSSCCCHHHHH---H-------HTC-----EECSSHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCcChhhhh---h-------cCc-----EEcCCHHHHHhhCCEEEEeccCchHHHhh
Confidence            9999999997 799999999999 76542111   1       111     12348999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHH
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA  333 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~  333 (394)
                      ++++.|+.||+|+++||+|||+++|+++|.++|++|++.||++|||+.||.+++|||++||||+|||++++|.+++.++.
T Consensus       220 i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~  299 (320)
T 1gdh_A          220 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMA  299 (320)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHH
T ss_pred             cCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999556799999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCC
Q 016162          334 TLAALNVLGKIKGYPIW  350 (394)
Q Consensus       334 ~~~~~ni~~~l~g~~~~  350 (394)
                      ..+ +|+.+|++|+++.
T Consensus       300 ~~~-~nl~~~~~g~~~~  315 (320)
T 1gdh_A          300 HQA-NDLIDALFGGADM  315 (320)
T ss_dssp             HHH-HHHHHHHHTTSCC
T ss_pred             HHH-HHHHHHHcCCCCc
Confidence            999 9999999998764

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.8e-62  Score=511.56  Aligned_cols=344  Identities=28%  Similarity=0.356  Sum_probs=304.6

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcc
Q 016162           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (394)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g   94 (394)
                      ++|||+++++++. ..+.|++. +++++..    ..+++++.+.+.+ +|++++++.+++++++++++|+|  |+|++.|
T Consensus         4 ~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~i~~~~   74 (529)
T 1ygy_A            4 LPVVLIADKLAPS-TVAALGDQ-VEVRWVD----GPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVARAG   74 (529)
T ss_dssp             CCEEEECSSCCGG-GGTTSCSS-SEEEECC----TTSHHHHHHHGGG-CSEEEECSSSCBCHHHHHTCTTC--CEEEESS
T ss_pred             CcEEEEeCCCCHH-HHHHHhcC-ceEEEcC----CCCHHHHHHHhcC-CEEEEEcCCCCCCHHHHhhCCCC--cEEEECC
Confidence            4688888888763 45666554 6665432    2478899988884 99999998889999999999988  9999999


Q ss_pred             cCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016162           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (394)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG  174 (394)
                      +|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|.|.   +..+.|.+++|+|+||||+|
T Consensus        75 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~---~~~~~~~~l~g~~vgIIG~G  151 (529)
T 1ygy_A           75 VGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWK---RSSFSGTEIFGKTVGVVGLG  151 (529)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCC---GGGCCBCCCTTCEEEEECCS
T ss_pred             cCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCc---ccCcCccccCCCEEEEEeeC
Confidence            999999999999999999999999999999999999999999999999999999864   33456789999999999999


Q ss_pred             hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcc
Q 016162          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (394)
Q Consensus       175 ~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li  254 (394)
                      +||+++|+++ +++||+|++|||+......   ..       .|.     .. .++++++++||+|++|+|++++|.+++
T Consensus       152 ~IG~~vA~~l-~~~G~~V~~~d~~~~~~~a---~~-------~g~-----~~-~~l~e~~~~aDvV~l~~P~~~~t~~~i  214 (529)
T 1ygy_A          152 RIGQLVAQRI-AAFGAYVVAYDPYVSPARA---AQ-------LGI-----EL-LSLDDLLARADFISVHLPKTPETAGLI  214 (529)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECTTSCHHHH---HH-------HTC-----EE-CCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHH---Hh-------cCc-----EE-cCHHHHHhcCCEEEECCCCchHHHHHh
Confidence            9999999997 7999999999998743211   11       121     12 389999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 016162          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (394)
Q Consensus       255 ~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~  334 (394)
                      +++.++.||+|+++||+|||+++|+++|+++|++|+++||++|||+.||.+++|||+++|+++|||++++|.++++++..
T Consensus       215 ~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~  294 (529)
T 1ygy_A          215 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGT  294 (529)
T ss_dssp             CHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHH
T ss_pred             CHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhccccCCC
Q 016162          335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSAASPH  392 (394)
Q Consensus       335 ~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (394)
                      .+++|+.+++.|++..|.|| + |.  + +.++.++||+.+++++|.++.||+.+.+.
T Consensus       295 ~~~~~l~~~l~~~~~~~~v~-~-~~--~-~~hd~i~P~l~La~~lg~~~~qla~g~~~  347 (529)
T 1ygy_A          295 DVAESVRLALAGEFVPDAVN-V-GG--G-VVNEEVAPWLDLVRKLGVLAGVLSDELPV  347 (529)
T ss_dssp             HHHHHHHHHHTTCCCTTBCS-C-CS--T-TSCTTTTTHHHHHHHHHHHHHHTSSSCCS
T ss_pred             HHHHHHHHHHcCCCCCcccC-C-cc--c-ccchhhhhHHHHHHHHHHHHHHHhCCCce
Confidence            99999999999999999997 4 32  2 47789999999999999999999877654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.6e-63  Score=491.65  Aligned_cols=312  Identities=25%  Similarity=0.372  Sum_probs=268.5

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEE
Q 016162           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (394)
Q Consensus        16 ~~vlv~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~   92 (394)
                      |||++..  +.. ..+++.+.+ .++++.+....    ..+++.+.+. ++|+++++..+++++++++++|+.++|+|++
T Consensus         1 Mkil~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   74 (333)
T 1dxy_A            1 MKIIAYGARVDE-IQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTI   74 (333)
T ss_dssp             CEEEECSCCTTT-HHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeccccC-HHHHHHHHHhCCeEEEEcCCC----ChHHHHHHhc-CCeEEEEcCCCCCCHHHHHhCcccCceEEEE
Confidence            4677753  333 345666644 46666543321    2245666666 5999999877789999999999833399999


Q ss_pred             cccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016162           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (394)
Q Consensus        93 ~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (394)
                      .|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|. |.. ...|.+++|+||||||
T Consensus        75 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  152 (333)
T 1dxy_A           75 RNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE-KAG-TFIGKELGQQTVGVMG  152 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH-HHT-CCCCCCGGGSEEEEEC
T ss_pred             cCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc-ccc-CCCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999984 511 2357899999999999


Q ss_pred             cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhh
Q 016162          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (394)
Q Consensus       173 lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~  252 (394)
                      +|+||+.+|+++ ++|||+|++|||+......              .  . . ...++++++++||+|++|+|++++|++
T Consensus       153 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~--------------~--~-~-~~~~l~ell~~aDvV~~~~P~~~~t~~  213 (333)
T 1dxy_A          153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDH--------------P--D-F-DYVSLEDLFKQSDVIDLHVPGIEQNTH  213 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCSSCC--------------T--T-C-EECCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhhH--------------h--c-c-ccCCHHHHHhcCCEEEEcCCCchhHHH
Confidence            999999999997 7999999999998753100              0  0 1 235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC-----------CC---CccccCCceEEc
Q 016162          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-----------MK---PGLSEMKNAIVV  318 (394)
Q Consensus       253 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~-----------~~---~~L~~~~nvilT  318 (394)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||+           ++   +|||++|||++|
T Consensus       214 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~T  293 (333)
T 1dxy_A          214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS  293 (333)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEEC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999983           22   379999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          319 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       319 PHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      ||+|++|.+++.++...+++|+.+|++|+++.|.||
T Consensus       294 PHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (333)
T 1dxy_A          294 PHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVT  329 (333)
T ss_dssp             SSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEEC
T ss_pred             CccccChHHHHHHHHHHHHHHHHHHHcCCCCCceeC
Confidence            999999999999999999999999999999999886

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.1e-62  Score=478.55  Aligned_cols=305  Identities=33%  Similarity=0.540  Sum_probs=269.3

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      ++|||+++.++++ ...+.|++.++++..  ..  ..+++++.+.+. ++|+++++..+++++++++++|+|  |+|++.
T Consensus         2 ~~~~il~~~~~~~-~~~~~l~~~~~~~~~--~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~   73 (307)
T 1wwk_A            2 KRMKVLVAAPLHE-KAIQVLKDAGLEVIY--EE--YPDEDRLVELVK-DVEAIIVRSKPKVTRRVIESAPKL--KVIARA   73 (307)
T ss_dssp             --CEEEECSCCCH-HHHHHHHHTTCEEEE--CS--SCCHHHHHHHST-TCSEEEESSCSCBCHHHHTTCTTC--CEEEES
T ss_pred             CceEEEEeCCCCH-HHHHHHHhCCeEEEe--CC--CCCHHHHHHHhc-CCEEEEEcCCCCCCHHHHhhCCCC--eEEEEC
Confidence            3578999888776 357788777766642  11  247788888887 599999887767999999999988  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.   +..+.|.+++|+||||||+
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~---~~~~~~~~l~g~~vgIiG~  150 (307)
T 1wwk_A           74 GVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWA---KKEAMGIELEGKTIGIIGF  150 (307)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC---TTTCCBCCCTTCEEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC---ccCcCCcccCCceEEEEcc
Confidence            9999999999999999999999999999999999999999999999999999999864   2224578999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+.+|+++ ++|||+|++|||+......   .       ..|.      ...++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g~------~~~~l~ell~~aDvV~l~~p~~~~t~~l  213 (307)
T 1wwk_A          151 GRIGYQVAKIA-NALGMNILLYDPYPNEERA---K-------EVNG------KFVDLETLLKESDVVTIHVPLVESTYHL  213 (307)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---H-------HTTC------EECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCChhhH---h-------hcCc------cccCHHHHHhhCCEEEEecCCChHHhhh
Confidence            99999999997 7999999999998764211   1       1121      1248999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCCCCCCcHHHHHHH
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGM  332 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~~  332 (394)
                      |+++.|+.||+|+++||+|||+++|+++|+++|++|++.||++|||+.||++ ++|||++|||++|||++++|.+++.++
T Consensus       214 i~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~  293 (307)
T 1wwk_A          214 INEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERA  293 (307)
T ss_dssp             BCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHH
T ss_pred             cCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999984 579999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 016162          333 ATLAALNVLGKIKG  346 (394)
Q Consensus       333 ~~~~~~ni~~~l~g  346 (394)
                      ...+++|+.+|++|
T Consensus       294 ~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          294 GVEVAEKVVKILKG  307 (307)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999999976

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.4e-62  Score=479.35  Aligned_cols=306  Identities=26%  Similarity=0.440  Sum_probs=273.7

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      .+|||++++++++ .+.+.|++.++++..  .  ...+++++.+.+. ++|+++++..+++++++++++|+|  |+|++.
T Consensus         4 ~~mkil~~~~~~~-~~~~~l~~~~~~v~~--~--~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~   75 (313)
T 2ekl_A            4 YTVKALITDPIDE-ILIKTLREKGIQVDY--M--PEISKEELLNIIG-NYDIIVVRSRTKVTKDVIEKGKKL--KIIARA   75 (313)
T ss_dssp             CCCEEEECSCCCH-HHHHHHHHTTCEEEE--C--TTCCHHHHHHHGG-GCSEEEECSSSCBCHHHHHHCTTC--CEEEEC
T ss_pred             cceEEEEECCCCH-HHHHHHHhCCcEEEe--C--CCCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--eEEEEc
Confidence            3468999988776 457888887776642  1  1347788888887 499999887778999999999988  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.     .+.+.+++|+||||||+
T Consensus        76 ~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~-----~~~~~~l~g~~vgIIG~  150 (313)
T 2ekl_A           76 GIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK-----KIEGLELAGKTIGIVGF  150 (313)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC-----CCCCCCCTTCEEEEESC
T ss_pred             CCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC-----CCCCCCCCCCEEEEEee
Confidence            9999999999999999999999999999999999999999999999999999999864     23568999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+.+|+++ ++|||+|++||++......   ..       .|.     . ..++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~~-------~g~-----~-~~~l~ell~~aDvVvl~~P~~~~t~~l  213 (313)
T 2ekl_A          151 GRIGTKVGIIA-NAMGMKVLAYDILDIREKA---EK-------INA-----K-AVSLEELLKNSDVISLHVTVSKDAKPI  213 (313)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HH-------TTC-----E-ECCHHHHHHHCSEEEECCCCCTTSCCS
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCcchhHH---Hh-------cCc-----e-ecCHHHHHhhCCEEEEeccCChHHHHh
Confidence            99999999997 7999999999998765311   11       121     1 248999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC---ccccCCceEEcCCCCCCcHHHHH
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASASKWTRE  330 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~---~L~~~~nvilTPHia~~t~~~~~  330 (394)
                      ++++.|+.||+|+++||+|||+++|+++|+++|++|++.||+||||+.||++++   |||++|||++|||++++|.++++
T Consensus       214 i~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~  293 (313)
T 2ekl_A          214 IDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQK  293 (313)
T ss_dssp             BCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHH
T ss_pred             hCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999887   99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCC
Q 016162          331 GMATLAALNVLGKIKGYPI  349 (394)
Q Consensus       331 ~~~~~~~~ni~~~l~g~~~  349 (394)
                      ++...+++|+.+|++|+++
T Consensus       294 ~~~~~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          294 RVAEMTTQNLLNAMKELGM  312 (313)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999886

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=8.1e-63  Score=494.72  Aligned_cols=317  Identities=21%  Similarity=0.211  Sum_probs=270.4

Q ss_pred             EEEEeCCC----Cch-HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhcccCCcE
Q 016162           17 RVVSTKPM----PGT-RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKA   89 (394)
Q Consensus        17 ~vlv~~~~----~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~--~~~i~~~~l~~l~~l~~k~   89 (394)
                      .|+++...    +.+ .+.+.|++.++++.+.....  .+.+++.+.+. ++|++++..  .+.+++++++++|+|  |+
T Consensus        42 ~v~l~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~--~~~~~l~~~l~-~ad~li~~~~~~~~i~~~~l~~~p~L--k~  116 (393)
T 2nac_A           42 IDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKD--GPDSVFERELV-DADVVISQPFWPAYLTPERIAKAKNL--KL  116 (393)
T ss_dssp             CSSCTTSCCSBTTTGGGCHHHHHHTTCEEEEESCCS--STTSHHHHHHT-TCSEEEEBTTBCCCBCHHHHHHCTTC--CE
T ss_pred             EEEECccccccCchhhHHHHHHHhCCCEEEEecCCC--CCHHHHHHhcc-CCCEEEEcCccCCCCCHHHHhhCCCC--cE
Confidence            34555544    332 23357777887876543321  24467888887 499999864  357999999999988  99


Q ss_pred             EEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016162           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (394)
Q Consensus        90 I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (394)
                      |++.|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|.. ......+.+|+|+|||
T Consensus       117 I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~gktvG  195 (393)
T 2nac_A          117 ALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNI-ADCVSHAYDLEAMHVG  195 (393)
T ss_dssp             EEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCCTTCEEE
T ss_pred             EEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCc-cccccCCccCCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999998642 1111246799999999


Q ss_pred             EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~  249 (394)
                      |||+|+||+.+|+++ ++|||+|++||++.......  ..       .|     .....++++++++||+|++|+|++++
T Consensus       196 IIGlG~IG~~vA~~l-~a~G~~V~~~d~~~~~~~~~--~~-------~G-----~~~~~~l~ell~~aDvV~l~~Plt~~  260 (393)
T 2nac_A          196 TVAAGRIGLAVLRRL-APFDVHLHYTDRHRLPESVE--KE-------LN-----LTWHATREDMYPVCDVVTLNCPLHPE  260 (393)
T ss_dssp             EECCSHHHHHHHHHH-GGGTCEEEEECSSCCCHHHH--HH-------HT-----CEECSSHHHHGGGCSEEEECSCCCTT
T ss_pred             EEeECHHHHHHHHHH-HhCCCEEEEEcCCccchhhH--hh-------cC-----ceecCCHHHHHhcCCEEEEecCCchH
Confidence            999999999999997 89999999999986432111  11       11     11235899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCCCCCCcHHH
Q 016162          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWT  328 (394)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~  328 (394)
                      |+++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||++ ++|||++|||++|||+|+.|.++
T Consensus       261 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~  340 (393)
T 2nac_A          261 TEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTA  340 (393)
T ss_dssp             TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHH
T ss_pred             HHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHH
Confidence            99999999999999999999999999999999999999999999999999999976 47999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          329 REGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       329 ~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +.++...+++|+.+|++|+++.|.++
T Consensus       341 ~~~~~~~~~~nl~~~~~G~~~~~~~~  366 (393)
T 2nac_A          341 QARYAAGTREILECFFEGRPIRDEYL  366 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCGGGE
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcceeE
Confidence            99999999999999999999998875

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=4.3e-63  Score=493.75  Aligned_cols=319  Identities=22%  Similarity=0.234  Sum_probs=272.1

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhcccCCcEEE
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFS   91 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~--~~~i~~~~l~~l~~l~~k~I~   91 (394)
                      ++++||+.+...+ ...+.|++.++++.+.....  .+.+++.+.+.+ +|++++..  .+.+++++++++|+|  |+|+
T Consensus        16 ~~~~vl~~d~~~~-~~~~~l~~~~~~v~~~~~~~--~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~l~~~~~L--k~I~   89 (364)
T 2j6i_A           16 DEEKLYGCTENKL-GIANWLKDQGHELITTSDKE--GGNSVLDQHIPD-ADIIITTPFHPAYITKERIDKAKKL--KLVV   89 (364)
T ss_dssp             HCTTCTTBTTTGG-GCHHHHHHTTCEEEEESCCS--STTSHHHHHGGG-CSEEEECTTSCCCBCHHHHHHCTTC--CEEE
T ss_pred             cCceEEEecCccH-HHHHHHHhCCCEEEEcCCCC--CCHHHHHHHhhC-CeEEEecCcCCCCCCHHHHhhCCCC--eEEE
Confidence            3567877777655 34667777888876544322  245788888874 99999864  346899999999988  9999


Q ss_pred             EcccCccccchhHHhhC--CceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016162           92 NMAVGYNNVDVNAANKY--GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (394)
Q Consensus        92 ~~g~G~d~id~~~a~~~--gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (394)
                      +.|+|+||||+++|+++  ||.|+|+|++++.+||||++++||+++|++..+++.+++|.|.. ......+.+++|+|||
T Consensus        90 ~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~g~tvg  168 (364)
T 2j6i_A           90 VAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEV-AAIAKDAYDIEGKTIA  168 (364)
T ss_dssp             ESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCSTTCEEE
T ss_pred             ECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCc-CcccCCcccCCCCEEE
Confidence            99999999999999999  99999999999999999999999999999999999999999741 1111246799999999


Q ss_pred             EEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCCh
Q 016162          170 VIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~  248 (394)
                      |||+|+||+.+|+++ ++|||+ |++||++.......  ..       .|     .....++++++++||+|++|+|+++
T Consensus       169 IIG~G~IG~~vA~~l-~~~G~~~V~~~d~~~~~~~~~--~~-------~g-----~~~~~~l~ell~~aDvV~l~~P~t~  233 (364)
T 2j6i_A          169 TIGAGRIGYRVLERL-VPFNPKELLYYDYQALPKDAE--EK-------VG-----ARRVENIEELVAQADIVTVNAPLHA  233 (364)
T ss_dssp             EECCSHHHHHHHHHH-GGGCCSEEEEECSSCCCHHHH--HH-------TT-----EEECSSHHHHHHTCSEEEECCCCST
T ss_pred             EECcCHHHHHHHHHH-HhCCCcEEEEECCCccchhHH--Hh-------cC-----cEecCCHHHHHhcCCEEEECCCCCh
Confidence            999999999999997 899997 99999876432110  11       11     1223589999999999999999999


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccC--C---ceEEcCCCC
Q 016162          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM--K---NAIVVPHIA  322 (394)
Q Consensus       249 ~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~--~---nvilTPHia  322 (394)
                      +|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||++. +|||.+  |   ||++|||+|
T Consensus       234 ~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia  313 (364)
T 2j6i_A          234 GTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYS  313 (364)
T ss_dssp             TTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCG
T ss_pred             HHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccC
Confidence            9999999999999999999999999999999999999999999999999999999864 799999  9   999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          323 SASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       323 ~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +.|.+++.++...+++|+.+|++|++....+|
T Consensus       314 ~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~~n  345 (364)
T 2j6i_A          314 GTTLDAQTRYAQGTVNILESFFTGKFDYRPQD  345 (364)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHTTCCCCCGGG
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Confidence            99999999999999999999999995444454

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=2.2e-62  Score=479.43  Aligned_cols=301  Identities=20%  Similarity=0.243  Sum_probs=258.5

Q ss_pred             CceEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEE
Q 016162           14 GKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (394)
Q Consensus        14 ~~~~vlv~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~   92 (394)
                      +.|||++..+.. ++.|.+.+++..+++++....+     ++    .. ++|+++++.   .+++++++ |+|  |+|++
T Consensus         2 ~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~ad~~i~~~---~~~~~l~~-~~L--k~I~~   65 (315)
T 3pp8_A            2 NAMEIIFYHPTFNAAWWVNALEKALPHARVREWKV-----GD----NN-PADYALVWQ---PPVEMLAG-RRL--KAVFV   65 (315)
T ss_dssp             CCEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT-----TC----CS-CCSEEEESS---CCHHHHTT-CCC--SEEEE
T ss_pred             CceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC-----CC----cc-CcEEEEECC---CCHHHhCC-CCc--eEEEE
Confidence            568999987654 3468888887766666544321     11    22 599999874   46899999 988  99999


Q ss_pred             cccCcccc-c-hhH---HhhCCceEecCCCC-CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCC
Q 016162           93 MAVGYNNV-D-VNA---ANKYGIAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (394)
Q Consensus        93 ~g~G~d~i-d-~~~---a~~~gI~v~n~p~~-~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gk  166 (394)
                      .|+|+||| | +++   +.++||+|+|+|++ ++.+||||++++||+++|++..+++.+++|.|..+     .+++++|+
T Consensus        66 ~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~  140 (315)
T 3pp8_A           66 LGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PEYTREEF  140 (315)
T ss_dssp             SSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTC
T ss_pred             CCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CCCCcCCC
Confidence            99999999 7 887   78899999999986 47999999999999999999999999999996542     46899999


Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl  246 (394)
                      ||||||+|+||+.+|+++ ++|||+|++|||++... +             +..  ......++++++++||+|++|+|+
T Consensus       141 tvGIiG~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~-------------~~~--~~~~~~~l~ell~~aDiV~l~~Pl  203 (315)
T 3pp8_A          141 SVGIMGAGVLGAKVAESL-QAWGFPLRCWSRSRKSW-P-------------GVE--SYVGREELRAFLNQTRVLINLLPN  203 (315)
T ss_dssp             CEEEECCSHHHHHHHHHH-HTTTCCEEEEESSCCCC-T-------------TCE--EEESHHHHHHHHHTCSEEEECCCC
T ss_pred             EEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCchhh-h-------------hhh--hhcccCCHHHHHhhCCEEEEecCC
Confidence            999999999999999997 89999999999986531 0             000  011125899999999999999999


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCCCc
Q 016162          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASAS  325 (394)
Q Consensus       247 t~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t  325 (394)
                      |++|+++|+++.|+.||+|++|||+|||+++|++||++||++|++.||+||||++||++. +|||++|||++|||+|+.|
T Consensus       204 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t  283 (315)
T 3pp8_A          204 TAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVT  283 (315)
T ss_dssp             CGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCC
T ss_pred             chhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999864 7999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          326 KWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       326 ~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      .+  +++...+++|+.+|++|+++.|.||
T Consensus       284 ~~--~~~~~~~~~ni~~~~~G~~~~~~V~  310 (315)
T 3pp8_A          284 RP--AEAIDYISRTITQLEKGEPVTGQVD  310 (315)
T ss_dssp             CH--HHHHHHHHHHHHHHHHTCCCCCBCC
T ss_pred             HH--HHHHHHHHHHHHHHHcCCCCCceEC
Confidence            85  5799999999999999999999987

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.1e-61  Score=478.14  Aligned_cols=310  Identities=29%  Similarity=0.438  Sum_probs=273.4

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHH-HHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e-l~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      |++||++.++++ .+.+.|++. +++......   .+.++ +.+.+. ++|+++++..+++++++++++|+|  |+|++.
T Consensus        23 ~~~vl~~~~~~~-~~~~~l~~~-~~~~~~~~~---~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~   94 (333)
T 3ba1_A           23 AIGVLMMCPMST-YLEQELDKR-FKLFRYWTQ---PAQRDFLALQAE-SIRAVVGNSNAGADAELIDALPKL--EIVSSF   94 (333)
T ss_dssp             CCEEEECSCCCH-HHHHHHHHH-SEEEEGGGC---SSHHHHHHHHTT-TEEEEEECSSSCBCHHHHHHCTTC--CEEEES
T ss_pred             CCEEEEeCCCCH-HHHHHHHhc-CCEEEecCC---CChHHHHHHHhC-CCEEEEEcCCCCCCHHHHhhCCCC--cEEEEc
Confidence            578999988876 456777653 455433211   24455 555555 599999887778999999999998  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|. |. ....|.+++|+||||||+
T Consensus        95 ~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~-~~~~~~~l~g~~vgIIG~  172 (333)
T 3ba1_A           95 SVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FG-DFKLTTKFSGKRVGIIGL  172 (333)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGG-GC-CCCCCCCCTTCCEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC-cc-ccccccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999975 21 223578999999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhc
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~l  253 (394)
                      |+||+.+|+++ ++|||+|++|||+....              .+     .....++++++++||+|++|+|++++|+++
T Consensus       173 G~iG~~vA~~l-~~~G~~V~~~dr~~~~~--------------~g-----~~~~~~l~ell~~aDvVil~vP~~~~t~~l  232 (333)
T 3ba1_A          173 GRIGLAVAERA-EAFDCPISYFSRSKKPN--------------TN-----YTYYGSVVELASNSDILVVACPLTPETTHI  232 (333)
T ss_dssp             SHHHHHHHHHH-HTTTCCEEEECSSCCTT--------------CC-----SEEESCHHHHHHTCSEEEECSCCCGGGTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCchhc--------------cC-----ceecCCHHHHHhcCCEEEEecCCChHHHHH
Confidence            99999999997 79999999999986431              01     123468999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHH
Q 016162          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA  333 (394)
Q Consensus       254 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~  333 (394)
                      ++++.|+.||+|++|||+|||.++|+++|+++|++|+++||++|||+.||++.+|||++|||++|||+|+.|.++++++.
T Consensus       233 i~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~  312 (333)
T 3ba1_A          233 INREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMA  312 (333)
T ss_dssp             BCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHH
T ss_pred             hhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999877899999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCC
Q 016162          334 TLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       334 ~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      ..+++|+.+|++|+++.|.||
T Consensus       313 ~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          313 DLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999988875

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1.7e-60  Score=469.58  Aligned_cols=322  Identities=33%  Similarity=0.462  Sum_probs=281.2

Q ss_pred             CCCceEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-cccCCcE
Q 016162           12 PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKA   89 (394)
Q Consensus        12 ~~~~~~vlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l-~~l~~k~   89 (394)
                      |++++||+++.++++ .+.+.|++. ++++.... .....+++++.+.+. ++|+++++..+++++++++++ |+|  |+
T Consensus         5 ~~~~~~il~~~~~~~-~~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~~L--k~   79 (330)
T 2gcg_A            5 PVRLMKVFVTRRIPA-EGRVALARAADCEVEQWD-SDEPIPAKELERGVA-GAHGLLCLLSDHVDKRILDAAGANL--KV   79 (330)
T ss_dssp             --CCEEEEESSCCCH-HHHHHHHHCTTEEEEECC-SSSCCCHHHHHHHHT-TCSEEEECTTSCBCHHHHHHHCTTC--CE
T ss_pred             CCCCCEEEEECCCCH-HHHHHHHhcCCceEEEec-CCCCCCHHHHHHHhc-CCeEEEECCCCCCCHHHHHhcCCCc--eE
Confidence            456789999988765 467788775 35665432 222357889998887 499999877778999999999 987  99


Q ss_pred             EEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016162           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (394)
Q Consensus        90 I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (394)
                      |++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+..+.|.+++|+|||
T Consensus        80 I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           80 ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             EEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             EEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999987765444567899999999


Q ss_pred             EEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh
Q 016162          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (394)
Q Consensus       170 IIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~  249 (394)
                      |||+|.||+.+|+++ +++|++|++||++.......  .       ..+     ... .++++++++||+|++|+|.+++
T Consensus       160 IIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~--~-------~~g-----~~~-~~l~e~l~~aDvVi~~vp~~~~  223 (330)
T 2gcg_A          160 IIGLGRIGQAIARRL-KPFGVQRFLYTGRQPRPEEA--A-------EFQ-----AEF-VSTPELAAQSDFIVVACSLTPA  223 (330)
T ss_dssp             EECCSHHHHHHHHHH-GGGTCCEEEEESSSCCHHHH--H-------TTT-----CEE-CCHHHHHHHCSEEEECCCCCTT
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCcchhHH--H-------hcC-----cee-CCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 79999999999876432110  1       111     112 3899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccCCceEEcCCCCCCcHHH
Q 016162          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWT  328 (394)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~  328 (394)
                      |+++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++|||+.||++ ++|||+++||++|||+|+.|.++
T Consensus       224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~  303 (330)
T 2gcg_A          224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRT  303 (330)
T ss_dssp             TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHH
T ss_pred             HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999975 47999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          329 REGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       329 ~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +.++...+++|+.+|++|+++.|.||
T Consensus       304 ~~~~~~~~~~n~~~~~~g~~~~~~v~  329 (330)
T 2gcg_A          304 RNTMSLLAANNLLAGLRGEPMPSELK  329 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCTTEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999988886

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.3e-59  Score=464.05  Aligned_cols=317  Identities=39%  Similarity=0.627  Sum_probs=278.5

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcc
Q 016162           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (394)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g   94 (394)
                      ++||+++.++++ .+.+.|++ .+++++... ....+++++.+.+. ++|+++++..+++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~-~~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~L--k~I~~~~   75 (334)
T 2dbq_A            2 KPKVFITREIPE-VGIKMLED-EFEVEVWGD-EKEIPREILLKKVK-EVDALVTMLSERIDKEVFENAPKL--RIVANYA   75 (334)
T ss_dssp             CCEEEESSCCCH-HHHHHHHT-TSEEEECCC-SSCCCHHHHHHHTT-SCSEEEECTTSCBCHHHHHTCTTC--CEEEESS
T ss_pred             CcEEEEecCCCH-HHHHHHHh-cCCEEEecC-CCCCCHHHHHHHhc-CcEEEEEcCCCCCCHHHHhhCCCc--eEEEECC
Confidence            357888887765 45677765 356654332 22347888888887 499999987778999999999988  9999999


Q ss_pred             cCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccC----CCCCCcccccccCCCeEEE
Q 016162           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGV  170 (394)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~----~w~~~~~~g~~l~gktvGI  170 (394)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.    .|.+..+.|.++.|+||||
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgI  155 (334)
T 2dbq_A           76 VGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGI  155 (334)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEE
T ss_pred             cccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999986    5654344578999999999


Q ss_pred             EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (394)
Q Consensus       171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t  250 (394)
                      ||+|.||+.+|+++ +++|++|++|||+......   ..+       |.      ...++++++++||+|++|+|.+++|
T Consensus       156 IG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~---~~~-------g~------~~~~l~~~l~~aDvVil~vp~~~~t  218 (334)
T 2dbq_A          156 IGLGRIGQAIAKRA-KGFNMRILYYSRTRKEEVE---REL-------NA------EFKPLEDLLRESDFVVLAVPLTRET  218 (334)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHH-------CC------EECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HhCCCEEEEECCCcchhhH---hhc-------Cc------ccCCHHHHHhhCCEEEECCCCChHH
Confidence            99999999999997 7999999999998754211   111       21      1358999999999999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHH
Q 016162          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE  330 (394)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~  330 (394)
                      +++++++.++.||+|++|||+|||.++|+++|+++|++|++.||++|||+.||..++|||++||||+|||+|+.|.++..
T Consensus       219 ~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~  298 (334)
T 2dbq_A          219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE  298 (334)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHH
T ss_pred             HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999445699999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          331 GMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       331 ~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      ++...+++|+.+|++|+++.|.||
T Consensus       299 ~~~~~~~~n~~~~~~g~~~~~~v~  322 (334)
T 2dbq_A          299 GMAELVAKNLIAFKRGEIPPTLVN  322 (334)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             HHHHHHHHHHHHHHcCCCCccccC
Confidence            999999999999999999998886

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.9e-60  Score=466.16  Aligned_cols=312  Identities=30%  Similarity=0.460  Sum_probs=276.0

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEcc
Q 016162           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (394)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g   94 (394)
                      ++|||++.++++ ...+.|++. +++++..    ..+.+++.+.+. ++|+++++..+++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~-~~~~~l~~~-~~~~~~~----~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (333)
T 2d0i_A            2 RPKVGVLLKMKR-EALEELKKY-ADVEIIL----YPSGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHS   72 (333)
T ss_dssp             CSEEEECSCCCH-HHHHHHHTT-SEEEECC----SCCHHHHHHHGG-GCSEEEECTTSCBCHHHHTTCTTC--CEEEESS
T ss_pred             CcEEEEECCCCH-HHHHHHHhc-CCEEEeC----CCCHHHHHHHhc-CCEEEEECCCCCCCHHHHhhCCCc--eEEEECC
Confidence            468999888876 457777654 5665432    247888888887 499999887778999999999988  9999999


Q ss_pred             cCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc----cccCCCeEEE
Q 016162           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQTVGV  170 (394)
Q Consensus        95 ~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g----~~l~gktvGI  170 (394)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|. ....|    .+++|+||||
T Consensus        73 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~~~~~l~g~~vgI  151 (333)
T 2d0i_A           73 AGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA-KIWTGFKRIESLYGKKVGI  151 (333)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHH-HHHTTSCCCCCSTTCEEEE
T ss_pred             cccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCc-ccccCCcccCCCCcCEEEE
Confidence            999999999999999999999999999999999999999999999999999999975432 11245    7999999999


Q ss_pred             EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (394)
Q Consensus       171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t  250 (394)
                      ||+|.||+.+|+++ +++||+|++||++......   ..+       +     .. ..++++++++||+|++|+|.+++|
T Consensus       152 IG~G~iG~~vA~~l-~~~G~~V~~~d~~~~~~~~---~~~-------g-----~~-~~~l~e~l~~aDiVil~vp~~~~t  214 (333)
T 2d0i_A          152 LGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVE---KEL-------K-----AR-YMDIDELLEKSDIVILALPLTRDT  214 (333)
T ss_dssp             ECCSHHHHHHHHHH-GGGTCEEEEECSSCCHHHH---HHH-------T-----EE-ECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HHCCCEEEEECCCcchhhh---hhc-------C-----ce-ecCHHHHHhhCCEEEEcCCCChHH
Confidence            99999999999997 7999999999998764211   111       1     11 248999999999999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCC-ceEEcCCCCCCcHHHH
Q 016162          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWTR  329 (394)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~-nvilTPHia~~t~~~~  329 (394)
                      +++++++.++.||+| ++||+|||.++|+++|+++|++|++.||++|||++||++++|||++| |||+|||+++.|.+++
T Consensus       215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~  293 (333)
T 2d0i_A          215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ  293 (333)
T ss_dssp             TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHH
T ss_pred             HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHH
Confidence            999999999999999 99999999999999999999999999999999999998778999999 9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          330 EGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       330 ~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      .++...+++|+.+|++|+++.|.||
T Consensus       294 ~~~~~~~~~n~~~~~~g~~~~~~v~  318 (333)
T 2d0i_A          294 EDVGFRAVENLLKVLRGEVPEDLVN  318 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCccC
Confidence            9999999999999999999998886

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=9e-60  Score=467.46  Aligned_cols=323  Identities=26%  Similarity=0.343  Sum_probs=273.4

Q ss_pred             ceEEEEeCC-CC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc----CCCcEEEec------CCccccHHHHHHh
Q 016162           15 KYRVVSTKP-MP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG----DKCDGVIGQ------LTEDWGETLFAAL   82 (394)
Q Consensus        15 ~~~vlv~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~----~~~d~ii~~------~~~~i~~~~l~~l   82 (394)
                      ++|||++.+ ++ .....+.|++ .+++....    ..+++++.+.+.    +++|+++..      ..+++++++++++
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~   77 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQ-KFEVIPAN----LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL   77 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHH-HSEEEECC----CCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTS
T ss_pred             CcEEEEECCccccChHHHHHHHh-cceEEecC----CCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhc
Confidence            568999887 53 2234566655 35664432    247889998886    258988864      2458999999999


Q ss_pred             c-ccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCc---cCC-CCCCc
Q 016162           83 S-RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL---YDG-WLPNL  157 (394)
Q Consensus        83 ~-~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~---~~~-w~~~~  157 (394)
                      | +|  |+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.   |.. +....
T Consensus        78 ~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~  155 (348)
T 2w2k_A           78 PSSL--KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIG  155 (348)
T ss_dssp             CTTC--CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ccCc--eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccccc
Confidence            8 47  99999999999999999999999999999999999999999999999999999999999998   731 10011


Q ss_pred             ccccccCCCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       158 ~~g~~l~gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      ..|.+++|+||||||+|+||+.+|+++ + +|||+|++||++.......  ..       .+     .....++++++++
T Consensus       156 ~~~~~l~g~~vgIIG~G~IG~~vA~~l-~~~~G~~V~~~d~~~~~~~~~--~~-------~g-----~~~~~~l~ell~~  220 (348)
T 2w2k_A          156 KSAHNPRGHVLGAVGLGAIQKEIARKA-VHGLGMKLVYYDVAPADAETE--KA-------LG-----AERVDSLEELARR  220 (348)
T ss_dssp             TTCCCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHH--HH-------HT-----CEECSSHHHHHHH
T ss_pred             ccCcCCCCCEEEEEEECHHHHHHHHHH-HHhcCCEEEEECCCCcchhhH--hh-------cC-----cEEeCCHHHHhcc
Confidence            346899999999999999999999997 8 9999999999986432111  00       11     1122489999999


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceE
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  316 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvi  316 (394)
                      ||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||+.||.+++||+++||||
T Consensus       221 aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nvi  300 (348)
T 2w2k_A          221 SDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVT  300 (348)
T ss_dssp             CSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEE
T ss_pred             CCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999996566899999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccCcccC
Q 016162          317 VVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN  361 (394)
Q Consensus       317 lTPHia~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~~~~~~~~  361 (394)
                      +|||+|+.|.+++.++...+++|+.+|++|+++.|.|| . |.+.
T Consensus       301 ltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v~-~-~~~~  343 (348)
T 2w2k_A          301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPA-G-KVFA  343 (348)
T ss_dssp             ECCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCSSBC-S-CCCC
T ss_pred             EcCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcceec-c-cccC
Confidence            99999999999999999999999999999999999997 3 5443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.2e-59  Score=465.68  Aligned_cols=318  Identities=27%  Similarity=0.380  Sum_probs=265.3

Q ss_pred             CCceEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEE
Q 016162           13 NGKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (394)
Q Consensus        13 ~~~~~vlv~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~   91 (394)
                      ..|++|++.+... ..+ .+.++. ..++....    ..+.+|+.+.+.+++|+++++..+.+++++++++|+|  |+|+
T Consensus        19 ~~kp~i~~l~~~~~~~~-~~~l~~-~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--k~I~   90 (347)
T 1mx3_A           19 SHMPLVALLDGRDCTVE-MPILKD-VATVAFCD----AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIV   90 (347)
T ss_dssp             --CCEEEESSCSCCTTT-HHHHTT-TCEEEECC----CSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEE
T ss_pred             CCCCEEEEEcCCcchhh-HHHhhc-cceEEecC----CCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCC--CEEE
Confidence            5578888875321 222 455544 44555332    2356676665422478888877778999999999988  9999


Q ss_pred             EcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCC---Ccc-cccccCCCe
Q 016162           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP---NLF-VGNLLKGQT  167 (394)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~---~~~-~g~~l~gkt  167 (394)
                      +.|+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|.....   ... .+.+++|+|
T Consensus        91 ~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~t  170 (347)
T 1mx3_A           91 RIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGET  170 (347)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCE
T ss_pred             EcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999731100   001 136899999


Q ss_pred             EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCC
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt  247 (394)
                      |||||+|+||+.+|+++ ++|||+|++|||+.....+.   .+       |     .....++++++++||+|++|+|++
T Consensus       171 vGIIG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~~-------g-----~~~~~~l~ell~~aDvV~l~~P~t  234 (347)
T 1mx3_A          171 LGIIGLGRVGQAVALRA-KAFGFNVLFYDPYLSDGVER---AL-------G-----LQRVSTLQDLLFHSDCVTLHCGLN  234 (347)
T ss_dssp             EEEECCSHHHHHHHHHH-HTTTCEEEEECTTSCTTHHH---HH-------T-----CEECSSHHHHHHHCSEEEECCCCC
T ss_pred             EEEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhHh---hc-------C-----CeecCCHHHHHhcCCEEEEcCCCC
Confidence            99999999999999997 79999999999986542111   11       1     122358999999999999999999


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC--CCccccCCceEEcCCCCCCc
Q 016162          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASAS  325 (394)
Q Consensus       248 ~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~--~~~L~~~~nvilTPHia~~t  325 (394)
                      ++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.||++|||+.||++  ++||+.+|||++|||+++.|
T Consensus       235 ~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t  314 (347)
T 1mx3_A          235 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS  314 (347)
T ss_dssp             TTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCC
T ss_pred             HHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999986  36899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          326 KWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       326 ~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      .+++.++...+++|+.+|++|+++.+.+|
T Consensus       315 ~~~~~~~~~~~~~ni~~~~~g~~~~~l~~  343 (347)
T 1mx3_A          315 EQASIEMREEAAREIRRAITGRIPDSLKN  343 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcccCC
Confidence            99999999999999999999987664443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.2e-59  Score=458.27  Aligned_cols=292  Identities=22%  Similarity=0.302  Sum_probs=256.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      ||||++.++++ .+.+.|++.++++.    .          +.+. ++|+++++.   .+.++++++|+|  |+|++.|+
T Consensus         1 m~il~~~~~~~-~~~~~l~~~~~~v~----~----------~~~~-~~d~~i~~~---~~~~~l~~~~~L--k~I~~~~~   59 (303)
T 1qp8_A            1 MELYVNFELPP-EAEEELRKYFKIVR----G----------GDLG-NVEAALVSR---ITAEELAKMPRL--KFIQVVTA   59 (303)
T ss_dssp             CEEECCSCCCH-HHHHHHHTTCEEEC----S----------SCCT-TBCCCCBSC---CCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEccCCCH-HHHHHHHhcCCccc----h----------hhhC-CCEEEEECC---CCHHHHhhCCCC--cEEEECCc
Confidence            47888888776 46788877654431    0          1233 589888764   346899999988  99999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (394)
                      |+|+||++++ ++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|..+    ..+.+++|+|+||||+|+
T Consensus        60 G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~----~~~~~l~g~~vgIIG~G~  134 (303)
T 1qp8_A           60 GLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD----VEIPLIQGEKVAVLGLGE  134 (303)
T ss_dssp             CCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----SCCCCCTTCEEEEESCST
T ss_pred             CcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC----CCCCCCCCCEEEEEccCH
Confidence            9999999985 79999999999999999999999999999999999999999997432    123589999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhccc
Q 016162          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (394)
Q Consensus       176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~  255 (394)
                      ||+.+|+++ ++|||+|++|||+...   .            +     .....++++++++||+|++|+|++++|+++|+
T Consensus       135 IG~~~A~~l-~~~G~~V~~~dr~~~~---~------------~-----~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~  193 (303)
T 1qp8_A          135 IGTRVGKIL-AALGAQVRGFSRTPKE---G------------P-----WRFTNSLEEALREARAAVCALPLNKHTRGLVK  193 (303)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCC---S------------S-----SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCccc---c------------C-----cccCCCHHHHHhhCCEEEEeCcCchHHHHHhC
Confidence            999999997 7999999999997641   0            1     11246899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc-CCCCCC-CCccccCCceEEcCCCCCC--cHHHHHH
Q 016162          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF-EDEPYM-KPGLSEMKNAIVVPHIASA--SKWTREG  331 (394)
Q Consensus       256 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~-~~EP~~-~~~L~~~~nvilTPHia~~--t~~~~~~  331 (394)
                      ++.|+.||+|+++||+|||+++|+++|+++|++|++.||++||| ++||++ ++|||++|||++|||++|.  |.+++++
T Consensus       194 ~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~  273 (303)
T 1qp8_A          194 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQ  273 (303)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHH
T ss_pred             HHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999 889986 4799999999999999998  9999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 016162          332 MATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +...+++|+.+|++|+++.|.||
T Consensus       274 ~~~~~~~nl~~~~~g~~~~~~v~  296 (303)
T 1qp8_A          274 MVMEAVRNLITYATGGRPRNIAK  296 (303)
T ss_dssp             HHHHHHHHHHHHHTTSCCSCBCC
T ss_pred             HHHHHHHHHHHHHcCCCCCceeC
Confidence            99999999999999999998886

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=5.1e-59  Score=464.15  Aligned_cols=281  Identities=26%  Similarity=0.358  Sum_probs=244.8

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      ++||||+++.++.  ..+.+.+.+ ++.+...  ...+.++    +. ++|++++++.+++++++++ .++|  |+|++.
T Consensus         2 ~mmkIl~~~~~p~--~~~~~~~~~-~v~~~~~--~~~~~~~----l~-~ad~li~~~~~~v~~~ll~-~~~L--k~I~~~   68 (381)
T 3oet_A            2 NAMKILVDENMPY--ARELFSRLG-EVKAVPG--RPIPVEE----LN-HADALMVRSVTKVNESLLS-GTPI--NFVGTA   68 (381)
T ss_dssp             CCCEEEEETTSTT--HHHHHTTSS-EEEEECC-----CHHH----HT-TCSEEEECTTSCBSHHHHT-TSCC--CEEEES
T ss_pred             CceEEEECCCCcH--HHHHHhhCC-cEEEeCC--CCCCHHH----HC-CCEEEEECCCCCCCHHHHc-CCCC--EEEEEc
Confidence            4589999998875  346666655 6655432  2235544    34 5999999988889999998 5556  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (394)
                      |+|+||||+++|+++||.|+|+||+|+.+||||+++++|+++|+.                     |.+++|+||||||+
T Consensus        69 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------------------g~~l~gktvGIIGl  127 (381)
T 3oet_A           69 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------------------GFSLRDRTIGIVGV  127 (381)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------------------TCCGGGCEEEEECC
T ss_pred             cccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------------------CCccCCCEEEEEeE
Confidence            999999999999999999999999999999999999999999852                     25799999999999


Q ss_pred             ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh----
Q 016162          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----  249 (394)
Q Consensus       174 G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~----  249 (394)
                      |+||+.+|+++ ++|||+|++|||+....               + .   .....++++++++||+|++|+|+|++    
T Consensus       128 G~IG~~vA~~l-~a~G~~V~~~d~~~~~~---------------~-~---~~~~~sl~ell~~aDiV~l~~Plt~~g~~~  187 (381)
T 3oet_A          128 GNVGSRLQTRL-EALGIRTLLCDPPRAAR---------------G-D---EGDFRTLDELVQEADVLTFHTPLYKDGPYK  187 (381)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECHHHHHT---------------T-C---CSCBCCHHHHHHHCSEEEECCCCCCSSTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCChHHh---------------c-c---CcccCCHHHHHhhCCEEEEcCcCCcccccc
Confidence            99999999997 89999999999854321               0 0   11346999999999999999999999    


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHH
Q 016162          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR  329 (394)
Q Consensus       250 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~  329 (394)
                      |+++|+++.|+.||+|++|||+|||++||++||++||++|++.||+||||++||+++++||.++ +++|||+||+|.|++
T Consensus       188 T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~  266 (381)
T 3oet_A          188 TLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGK  266 (381)
T ss_dssp             CTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHH
T ss_pred             chhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887899865 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCC
Q 016162          330 EGMATLAALNVLGKIKGYPI  349 (394)
Q Consensus       330 ~~~~~~~~~ni~~~l~g~~~  349 (394)
                      .++..++++|+.+|+.+.+-
T Consensus       267 ~~~~~~~~~~l~~~l~~~~~  286 (381)
T 3oet_A          267 ARGTTQVFEAYSAFIGREQR  286 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCcc
Confidence            99999999999999988653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=5.3e-57  Score=436.31  Aligned_cols=250  Identities=26%  Similarity=0.358  Sum_probs=223.7

Q ss_pred             CCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHH
Q 016162           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (394)
Q Consensus        62 ~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~  141 (394)
                      ++|++++. ...+      ++|+|  |+|++.|+|+|+||+++|++++|.++| ++.++.+||||++++||++.|++..+
T Consensus        34 ~ad~li~~-~~~~------~~~~L--k~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~  103 (290)
T 3gvx_A           34 DAEAQVIK-DRYV------LGKRT--KMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILEN  103 (290)
T ss_dssp             CCSEEEES-SCCC------CCSSC--CEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhhhhhhh-hhhh------hhhhh--HHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhh
Confidence            59999984 3332      68888  999999999999999999987776665 58899999999999999999999999


Q ss_pred             HHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC
Q 016162          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (394)
Q Consensus       142 ~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (394)
                      ++.+++|.|..   .  ..++++|+||||||+|+||+++|+++ ++|||+|++|||+.....               .  
T Consensus       104 ~~~~~~g~w~~---~--~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~---------------~--  160 (290)
T 3gvx_A          104 NELMKAGIFRQ---S--PTTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVDQN---------------V--  160 (290)
T ss_dssp             HHHHHTTCCCC---C--CCCCCTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSCCCTT---------------C--
T ss_pred             hhHhhhccccc---C--CceeeecchheeeccCchhHHHHHHH-HhhCcEEEEEeccccccc---------------c--
Confidence            99999999742   2  12689999999999999999999997 799999999999864310               0  


Q ss_pred             ccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016162          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (394)
Q Consensus       222 ~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~  301 (394)
                        .....++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||++|||++
T Consensus       161 --~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (290)
T 3gvx_A          161 --DVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN  238 (290)
T ss_dssp             --SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             --ccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence              123458999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCceEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 016162          302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVLGKIKGYP  348 (394)
Q Consensus       302 EP~~~~~L~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~l~g~~  348 (394)
                      ||+  +|||++|||++|||+| ++|.++++++...+++|+.+|++|+.
T Consensus       239 EP~--~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          239 EPE--ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             TTS--CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             Ccc--cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            998  8999999999999999 89999999999999999999999864

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=5.9e-56  Score=442.92  Aligned_cols=281  Identities=25%  Similarity=0.352  Sum_probs=244.5

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      |||++++.++..  .+.+.+.+ ++.+....  ..+.+++    . ++|++++++.+.+++++++ +|+|  |+|++.|+
T Consensus         1 mkil~~~~~~~~--~~~~~~~~-~v~~~~~~--~~~~~~l----~-~ad~li~~~~~~~~~~~l~-~~~L--k~I~~~~~   67 (380)
T 2o4c_A            1 MRILADENIPVV--DAFFADQG-SIRRLPGR--AIDRAAL----A-EVDVLLVRSVTEVSRAALA-GSPV--RFVGTCTI   67 (380)
T ss_dssp             CEEEEETTCTTH--HHHHGGGS-EEEEECGG--GCSTTTT----T-TCSEEEECTTSCBCHHHHT-TSCC--CEEEECSS
T ss_pred             CEEEEecCchHH--HHHHHhCC-cEEEecCC--cCChHHH----C-CcEEEEEcCCCCCCHHHhc-CCCc--eEEEEcCc
Confidence            478888877652  45665554 55544321  1233333    3 5999999888889999999 8987  99999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (394)
                      |+||||+++|+++||.|+|+||+|+.+||||++++||++.|++                     |.+++|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------------------~~~l~g~tvGIIGlG~  126 (380)
T 2o4c_A           68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------------------GADLAERTYGVVGAGQ  126 (380)
T ss_dssp             CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------------------TCCGGGCEEEEECCSH
T ss_pred             ccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------------------hcccCCCEEEEEeCCH
Confidence            9999999999999999999999999999999999999999852                     2479999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChh----hh
Q 016162          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (394)
Q Consensus       176 IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~----t~  251 (394)
                      ||+++|+++ ++|||+|++|||+....  .           .+      ....++++++++||+|++|+|++++    |+
T Consensus       127 IG~~vA~~l-~~~G~~V~~~d~~~~~~--~-----------~g------~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          127 VGGRLVEVL-RGLGWKVLVCDPPRQAR--E-----------PD------GEFVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECHHHHHH--S-----------TT------SCCCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             HHHHHHHHH-HHCCCEEEEEcCChhhh--c-----------cC------cccCCHHHHHHhCCEEEEeccCccccccchh
Confidence            999999997 79999999999865421  0           01      1246899999999999999999999    99


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHH
Q 016162          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      ++++++.|+.||+|+++||+|||+++|+++|+++|++|++.||+||||++||+++++|+. +||++|||+||+|.+++.+
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~  265 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLR  265 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988778887 5999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 016162          332 MATLAALNVLGKIKGYPIWG  351 (394)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~  351 (394)
                      +..++++|+.+|++|++..+
T Consensus       266 ~~~~~~~nl~~~l~g~~~~~  285 (380)
T 2o4c_A          266 GTAQIYQAYCAWRGIAERVS  285 (380)
T ss_dssp             HHHHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCccc
Confidence            99999999999999987544

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=8e-38  Score=319.55  Aligned_cols=255  Identities=13%  Similarity=0.084  Sum_probs=211.1

Q ss_pred             CcEEE-EcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCC
Q 016162           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (394)
Q Consensus        87 ~k~I~-~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~g  165 (394)
                      ++.|+ .+++|+|++  ++|.++||.++|+|++|. +|||       +++|++....+.+++| |.   +  ..+.++.|
T Consensus       194 l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~---r--~~~~~l~G  257 (479)
T 1v8b_A          194 IIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LM---R--ATDFLISG  257 (479)
T ss_dssp             CCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HH---H--HHCCCCTT
T ss_pred             eEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hh---h--ccccccCC
Confidence            38888 889999998  789999999999999999 9999       4568888888888887 53   2  35678999


Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      +||||||+|.||+.+|+++ ++|||+|++||+++.......         ..+     + ...++++++++||+|++|+ 
T Consensus       258 ktVgIIG~G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a~---------~~g-----~-~~~~l~ell~~aDiVi~~~-  320 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAV---------MEG-----F-NVVTLDEIVDKGDFFITCT-  320 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHH---------TTT-----C-EECCHHHHTTTCSEEEECC-
T ss_pred             CEEEEEeeCHHHHHHHHHH-HhCcCEEEEEeCChhhHHHHH---------HcC-----C-EecCHHHHHhcCCEEEECC-
Confidence            9999999999999999997 899999999999986532211         111     1 2358999999999999995 


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHcCCcceEEeeccCCCCCCCCccccC--CceEEcCC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE--HLKQNPMFRVGLDVFEDEPYMKPGLSEM--KNAIVVPH  320 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~--aL~~g~l~gaalDV~~~EP~~~~~L~~~--~nvilTPH  320 (394)
                         +|.++|+++.|+.||+|++|||+|||++ ||+++|.+  ||++|+|+ +++|||+.++  ++|||.+  |||++| |
T Consensus       321 ---~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H  393 (479)
T 1v8b_A          321 ---GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-G  393 (479)
T ss_dssp             ---SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-H
T ss_pred             ---ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-e
Confidence               7899999999999999999999999999 99999999  99999998 9999995432  4688888  999999 9


Q ss_pred             CC-CCcHH-HHHHHHHHHHHHHHHHHcCC--CCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhccc
Q 016162          321 IA-SASKW-TREGMATLAALNVLGKIKGY--PIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSA  388 (394)
Q Consensus       321 ia-~~t~~-~~~~~~~~~~~ni~~~l~g~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (394)
                      +| +++.+ +..++..++++|+..|++|+  ++.|.|+++ |..    ..+.+.+ +.| +++|..+.||++
T Consensus       394 ~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~l~n~V~~l-p~~----~de~va~-l~L-~~lG~~l~~lt~  458 (479)
T 1v8b_A          394 CATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLL-PKH----LDEKVAL-YHL-KKLNASLTELDD  458 (479)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSSCCSSEECC-CHH----HHHHHHH-HHH-GGGTCCCCCCCH
T ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHcCCCCcCCcceEeC-Chh----hHHHHHH-HHH-HHcCChHhhcCh
Confidence            99 66755 77889999999999999999  999988865 543    2334444 455 667766666654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=1.4e-38  Score=326.32  Aligned_cols=255  Identities=15%  Similarity=0.151  Sum_probs=204.6

Q ss_pred             cccCCcEEE-EcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccccc
Q 016162           83 SRAGGKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (394)
Q Consensus        83 ~~l~~k~I~-~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~  161 (394)
                      +++  +.|+ .+++|+|++  ++|.++||.++|+|++|+ +|||+       ++|++....+.+++|    |.+  ..|.
T Consensus       212 ~~l--~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g----w~~--~~g~  273 (494)
T 3d64_A          212 AHI--KGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG----IKR--ATDV  273 (494)
T ss_dssp             TTC--CCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH----HHH--HHCC
T ss_pred             hCc--EEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh----hhh--cccc
Confidence            544  8887 889999998  789999999999999999 99994       347766655555555    422  3567


Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      +++|+||||||+|.||+.+|+++ ++|||+|++||+++....+..         ..|     + ...++++++++||+|+
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~---------~~G-----~-~~~~l~ell~~aDiVi  337 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSL-RGLGATVWVTEIDPICALQAA---------MEG-----Y-RVVTMEYAADKADIFV  337 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHH---------TTT-----C-EECCHHHHTTTCSEEE
T ss_pred             ccCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHH---------HcC-----C-EeCCHHHHHhcCCEEE
Confidence            89999999999999999999997 899999999999986532211         011     1 2358999999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccccC--CceEE
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM--KNAIV  317 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~~~--~nvil  317 (394)
                      +|+    +|+++|+++.|+.||+|++|||+|||++ ||+++| +||++|+|+ +++|+|   |++ ++|||.+  |||++
T Consensus       338 ~~~----~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~---plp~~~pL~~l~~~nvv~  408 (494)
T 3d64_A          338 TAT----GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI---IFPDGKRVILLAEGRLVN  408 (494)
T ss_dssp             ECS----SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHH
T ss_pred             ECC----CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE---ECCCCCchhhcCCCCEEE
Confidence            997    6899999999999999999999999999 699999 999999987 555555   654 3689888  99999


Q ss_pred             cCCCC-CCcH-HHHHHHHHHHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhccc
Q 016162          318 VPHIA-SASK-WTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSA  388 (394)
Q Consensus       318 TPHia-~~t~-~~~~~~~~~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (394)
                      | |+| +++. .+..++..++++|+..|++|+++.|.|+++ |.    +..+.+.+ +.| +++|..+.||++
T Consensus       409 t-H~atg~~~~~~~~~~a~~~~~ni~~~~~g~~~~n~V~~l-p~----~~d~~va~-l~L-~~~g~~~~~l~~  473 (494)
T 3d64_A          409 L-GCATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVYVL-PK----HLDEKVAR-LHL-ARIGAQLSELSD  473 (494)
T ss_dssp             H-HTSCCSCHHHHHHHHHHHHHHHHHHHHHGGGSCSSEEEC-CH----HHHHHHHH-HHH-TTTTCCCCCCCH
T ss_pred             E-eCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeC-Ch----hHHHHHHH-HHH-HHcCChHHhhCh
Confidence            9 999 6664 478889999999999999999999999755 43    12233333 555 667777776654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=5.6e-29  Score=240.69  Aligned_cols=214  Identities=15%  Similarity=0.088  Sum_probs=164.7

Q ss_pred             ceEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCC------CCHHHHHHHhcCCCcEEEec----------------CC
Q 016162           15 KYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTI------LSVEDIIALIGDKCDGVIGQ----------------LT   71 (394)
Q Consensus        15 ~~~vlv~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~------~~~~el~~~~~~~~d~ii~~----------------~~   71 (394)
                      +|||++..... ...+.+.|.+.|+++.+.......      ...+++.+.+. ++|+++++                ..
T Consensus         5 ~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~~~~~~~~   83 (293)
T 3d4o_A            5 GKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN-TVDAILLPISGTNEAGKVDTIFSNES   83 (293)
T ss_dssp             TCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG-GCSEEECCTTCCCTTCBCCBSSCSCC
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHh-cCCEEEeccccccCCceeecccccCC
Confidence            45666654322 234678888889998765432110      12245555555 49999985                34


Q ss_pred             ccccHHHHHHhcccCCcEEEEcccCccccch-hHHhhCCceEecCC------CCCchhhHHHHHHHHHHHHhchHHHHHH
Q 016162           72 EDWGETLFAALSRAGGKAFSNMAVGYNNVDV-NAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEADEF  144 (394)
Q Consensus        72 ~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~-~~a~~~gI~v~n~p------~~~~~~vAE~~l~~~L~~~R~~~~~~~~  144 (394)
                      +.+++++++++|++  |+|+   +|+|++|+ ++|+++||.|+|+|      ++++.+|||++++++|..          
T Consensus        84 ~~~~~~~l~~~~~l--~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~----------  148 (293)
T 3d4o_A           84 IVLTEEMIEKTPNH--CVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH----------  148 (293)
T ss_dssp             CBCCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             ccchHHHHHhCCCC--CEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh----------
Confidence            46899999999988  9987   79999998 89999999999998      889999999999998852          


Q ss_pred             HHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccc
Q 016162          145 MRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW  224 (394)
Q Consensus       145 ~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (394)
                                    .+.+++|+|+||||+|.||+.+|+++ +++||+|++|||+......  ...       .|.   ..
T Consensus       149 --------------~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~dr~~~~~~~--~~~-------~g~---~~  201 (293)
T 3d4o_A          149 --------------TDFTIHGANVAVLGLGRVGMSVARKF-AALGAKVKVGARESDLLAR--IAE-------MGM---EP  201 (293)
T ss_dssp             --------------CSSCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH--HHH-------TTS---EE
T ss_pred             --------------cCCCCCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECCHHHHHH--HHH-------CCC---ee
Confidence                          13579999999999999999999997 7999999999998754211  111       121   11


Q ss_pred             cccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       225 ~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      ....++++++++||+|++|+|.     ++++++.|+.||+|+++||++||..
T Consensus       202 ~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          202 FHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             cChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            1235789999999999999994     7899999999999999999999754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.93  E-value=4.8e-26  Score=220.73  Aligned_cols=221  Identities=15%  Similarity=0.095  Sum_probs=158.9

Q ss_pred             CceEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCC------CHHHHHHHhcCCCcEEEec---C-----------Cc
Q 016162           14 GKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTIL------SVEDIIALIGDKCDGVIGQ---L-----------TE   72 (394)
Q Consensus        14 ~~~~vlv~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~------~~~el~~~~~~~~d~ii~~---~-----------~~   72 (394)
                      +.|||++...-. ...+.+.|.+.++++.+...++...      ..+++.+.+. ++|+++..   .           .+
T Consensus         6 ~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            6 TGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ-QIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG-GCSEEECCSSCEETTTEECBSSCSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHh-cCCEEEeccccccCCcccccccccC
Confidence            346777765422 2346788888899987654322110      1123444455 59999872   1           34


Q ss_pred             c--ccHHHHHHhcccCCcEEEEcccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCc
Q 016162           73 D--WGETLFAALSRAGGKAFSNMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL  149 (394)
Q Consensus        73 ~--i~~~~l~~l~~l~~k~I~~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~  149 (394)
                      +  +++++++++|++  |+|+   +|+|++| +++|+++||.|+|+|+++  ++         ++.|++..+     +|.
T Consensus        85 ~~~~~~~~l~~~~~l--~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~  143 (300)
T 2rir_A           85 EVVLKQDHLDRTPAH--CVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGT  143 (300)
T ss_dssp             CEECCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHH
T ss_pred             CccchHHHHhhcCCC--CEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHH
Confidence            5  789999999987  8887   8999999 999999999999999974  22         334555443     344


Q ss_pred             cCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC
Q 016162          150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (394)
Q Consensus       150 ~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
                      |..  .....+.+++|+|+||||+|.||+.+|+++ +++|++|++|||+..... .. .       ..+.   ......+
T Consensus       144 ~~~--~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~d~~~~~~~-~~-~-------~~g~---~~~~~~~  208 (300)
T 2rir_A          144 IML--AIQHTDYTIHGSQVAVLGLGRTGMTIARTF-AALGANVKVGARSSAHLA-RI-T-------EMGL---VPFHTDE  208 (300)
T ss_dssp             HHH--HHHTCSSCSTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHH-HH-H-------HTTC---EEEEGGG
T ss_pred             HHH--HHHhcCCCCCCCEEEEEcccHHHHHHHHHH-HHCCCEEEEEECCHHHHH-HH-H-------HCCC---eEEchhh
Confidence            321  001245789999999999999999999997 799999999999875421 11 1       1121   1112357


Q ss_pred             HHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       230 l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      +++++++||+|++|+|+     ++++++.|+.||+|+++||++||+.
T Consensus       209 l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          209 LKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             HHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             HHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            99999999999999995     7899999999999999999999754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.92  E-value=2.3e-26  Score=236.35  Aligned_cols=253  Identities=14%  Similarity=0.055  Sum_probs=189.7

Q ss_pred             EEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeE
Q 016162           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (394)
Q Consensus        89 ~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktv  168 (394)
                      ++-.+|+|+|++  .++.++||.++|++++|. +|||+       .+|+++...+.+..+    |.+  ..+..+.|++|
T Consensus       214 vveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g----~~r--~~~~~l~GktV  277 (494)
T 3ce6_A          214 VTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG----INR--GTDALIGGKKV  277 (494)
T ss_dssp             EEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH----HHH--HHCCCCTTCEE
T ss_pred             EEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH----HHh--ccCCCCCcCEE
Confidence            445889999998  678899999999999999 99994       345555444444333    422  23457899999


Q ss_pred             EEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCCh
Q 016162          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (394)
Q Consensus       169 GIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~  248 (394)
                      +|+|+|.||+.+|+++ +++|++|+++|+++......         ...|.     . ..+++++++.+|+|+.|++   
T Consensus       278 ~IiG~G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~A---------~~~Ga-----~-~~~l~e~l~~aDvVi~atg---  338 (494)
T 3ce6_A          278 LICGYGDVGKGCAEAM-KGQGARVSVTEIDPINALQA---------MMEGF-----D-VVTVEEAIGDADIVVTATG---  338 (494)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTTC-----E-ECCHHHHGGGCSEEEECSS---
T ss_pred             EEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHcCC-----E-EecHHHHHhCCCEEEECCC---
Confidence            9999999999999996 89999999999987653221         11121     1 2578899999999999975   


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHcCCcceEEeeccCCCCCCCC-ccccCCceE----EcCCC
Q 016162          249 TTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE-HLKQNPMFRVGLDVFEDEPYMKP-GLSEMKNAI----VVPHI  321 (394)
Q Consensus       249 ~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~-aL~~g~l~gaalDV~~~EP~~~~-~L~~~~nvi----lTPHi  321 (394)
                       +.++++.+.|+.||+|++++|++|++. +|+++|.. +|+++++. +++|+|+.++...+ .|+..++++    +|||+
T Consensus       339 -t~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~  416 (494)
T 3ce6_A          339 -NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHP  416 (494)
T ss_dssp             -SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSC
T ss_pred             -CHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCc
Confidence             456888899999999999999999999 99999998 88888877 66899876442221 367778888    99999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccCcccCCCCCCCcCCCchhhHHHHHHHhhhccc
Q 016162          322 ASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKVCRFQGFKLSA  388 (394)
Q Consensus       322 a~~t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (394)
                      ++.+.++   +...+.+++..+.+|+++.+.|. +    .+ ++.++.-..+.| .++|..+.||+.
T Consensus       417 a~~~~~s---~~~qa~~ai~~~~~g~~~~~~V~-~----~P-~~~De~vA~lhL-~~lg~~l~~lt~  473 (494)
T 3ce6_A          417 SFVMSNS---FANQTIAQIELWTKNDEYDNEVY-R----LP-KHLDEKVARIHV-EALGGHLTKLTK  473 (494)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHTGGGCCSSEE-C----CC-HHHHHHHHHHHH-HHHTCCCCCCCH
T ss_pred             cccchHH---HHHHHHHHHHHHHcCCCCCCEEE-E----CH-HHHHHHHHHhhH-HHHHHHHHHhCh
Confidence            9877754   46788999999999988877763 2    12 233343444555 555666655543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.90  E-value=1.5e-22  Score=202.41  Aligned_cols=301  Identities=15%  Similarity=0.146  Sum_probs=199.9

Q ss_pred             eeEEEeCCCCc--eEEEEeCCCCchHHHHHHHhCCCeEEEecCC--CCCCCHHHHH-----------HHhcCCCcEEEec
Q 016162            5 VSIEVWNPNGK--YRVVSTKPMPGTRWINLLIEQDCRVEICTQK--KTILSVEDII-----------ALIGDKCDGVIGQ   69 (394)
Q Consensus         5 ~~~~~~~~~~~--~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~el~-----------~~~~~~~d~ii~~   69 (394)
                      |+|-|+++.+.  .||    .+.| +..+.|.+.|+++.+....  ....+.++..           +.+. ++|+|+ .
T Consensus         1 m~igv~~e~~~~E~Rv----~ltP-~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~-~adii~-~   73 (377)
T 2vhw_A            1 MRVGIPTETKNNEFRV----AITP-AGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWA-DADLLL-K   73 (377)
T ss_dssp             CEEEECCCCSTTCCCC----SCCH-HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHH-HCSEEE-C
T ss_pred             CEEEEEccCCCCCccc----CcCH-HHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhc-cCCEEE-E
Confidence            45556655543  233    3444 3578888889888664322  1234555554           2233 378664 5


Q ss_pred             CCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEe----------cCCCCCchhhHHHHHHHHHHHH-hch
Q 016162           70 LTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG----------NTPGVLTETTAELAASLSLAAA-RRI  138 (394)
Q Consensus        70 ~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~----------n~p~~~~~~vAE~~l~~~L~~~-R~~  138 (394)
                      ...+.++++....+..  .+++....++|...++++.++||.+.          |.|.++  ++||++..+++.+. |++
T Consensus        74 vk~p~~~e~~~l~~~~--~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~~~a~r~l  149 (377)
T 2vhw_A           74 VKEPIAAEYGRLRHGQ--ILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAAQVGAYHL  149 (377)
T ss_dssp             SSCCCGGGGGGCCTTC--EEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHHHHHHHHT
T ss_pred             eCCCChHHHhhcCCCC--EEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHHHHHHHHH
Confidence            5556666665545543  67777778889999999999999997          566654  55699985554444 666


Q ss_pred             HHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC
Q 016162          139 VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG  218 (394)
Q Consensus       139 ~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~  218 (394)
                      .    ..+.|+|. |...   ..++.|++|+|+|+|.||+.+|+.+ +++|++|+++|++.... +...+.+       +
T Consensus       150 ~----~~~~g~~~-~~~~---~~~l~g~~V~ViG~G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l-~~~~~~~-------g  212 (377)
T 2vhw_A          150 M----RTQGGRGV-LMGG---VPGVEPADVVVIGAGTAGYNAARIA-NGMGATVTVLDINIDKL-RQLDAEF-------C  212 (377)
T ss_dssp             S----GGGTSCCC-CTTC---BTTBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHT-------T
T ss_pred             H----HhcCCCcc-cccC---CCCCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhc-------C
Confidence            3    23445543 2221   1368999999999999999999996 89999999999987542 2111111       1


Q ss_pred             CCC-ccccccCCHHHHhcccCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 016162          219 EQP-VTWKRASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (394)
Q Consensus       219 ~~~-~~~~~~~~l~ell~~aDiV~l~l--Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaa  295 (394)
                      ... .......+++++++++|+|+.|+  |.+ +|.++++++.++.||+|+++||++..             .|   |  
T Consensus       213 ~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~-------------~G---g--  273 (377)
T 2vhw_A          213 GRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAID-------------QG---G--  273 (377)
T ss_dssp             TSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGG-------------TT---C--
T ss_pred             CeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecC-------------CC---C--
Confidence            110 00011236788899999999976  554 78899999999999999999999831             12   1  


Q ss_pred             eeccCC-CCCC-CCccccCCceE--EcCCCCCCcHHH-H--------HHHHHHHHHHHH-HHHcCCCCCCCCC
Q 016162          296 LDVFED-EPYM-KPGLSEMKNAI--VVPHIASASKWT-R--------EGMATLAALNVL-GKIKGYPIWGNPN  354 (394)
Q Consensus       296 lDV~~~-EP~~-~~~L~~~~nvi--lTPHia~~t~~~-~--------~~~~~~~~~ni~-~~l~g~~~~~~v~  354 (394)
                        ||+. ||.+ +.|++..+||+  +|||+++.+..+ .        ..+..++.++.. .+..++++.+.+|
T Consensus       274 --v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~v~  344 (377)
T 2vhw_A          274 --CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLS  344 (377)
T ss_dssp             --SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEE
T ss_pred             --ccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCcEE
Confidence              7887 8864 46899999998  999999988653 2        233333444433 4556667787776

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.81  E-value=4.7e-19  Score=176.48  Aligned_cols=303  Identities=15%  Similarity=0.164  Sum_probs=188.5

Q ss_pred             eeEEEeCCCCc--eEEEEeCCCCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHH----------HhcCCCcEEEecC
Q 016162            5 VSIEVWNPNGK--YRVVSTKPMPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIA----------LIGDKCDGVIGQL   70 (394)
Q Consensus         5 ~~~~~~~~~~~--~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~el~~----------~~~~~~d~ii~~~   70 (394)
                      |+|-++++.+.  .||    .+.| +..+.|.+.|+++.+.....  ...+.++..+          .+  ++|+|+. .
T Consensus         1 m~ig~~~e~~~~e~Rv----~l~P-~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~--~ad~il~-v   72 (369)
T 2eez_A            1 MVIGVPKEIKTLENRV----ALTP-GGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW--GAEMVVK-V   72 (369)
T ss_dssp             CEEEECCCCSTTCCCC----SSCH-HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT--TSSEEEC-S
T ss_pred             CEEEEEccCCCCCcee----CcCH-HHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee--cCCEEEE-E
Confidence            45566665543  222    3445 35788888999987643321  2456666664          33  4898774 4


Q ss_pred             CccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEe---cCCCC-Cc----hhhHHHHH--HHHHHHHhchHH
Q 016162           71 TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG---NTPGV-LT----ETTAELAA--SLSLAAARRIVE  140 (394)
Q Consensus        71 ~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~---n~p~~-~~----~~vAE~~l--~~~L~~~R~~~~  140 (394)
                      ..+..++ ++.++. +.++++....+.|..+++++.++||.+.   +.+.. ..    .++++.+-  +.++++. .+..
T Consensus        73 k~p~~~~-~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~~-~l~~  149 (369)
T 2eez_A           73 KEPLPEE-YGFLRE-GLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGAQ-FLEK  149 (369)
T ss_dssp             SCCCGGG-GGGCCT-TCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHHH-HTSG
T ss_pred             CCCCHHH-HhhcCC-CcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHHH-HHHH
Confidence            4455444 555533 3488999899999999999999999998   55543 11    34455444  3333322 2221


Q ss_pred             HHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCC
Q 016162          141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ  220 (394)
Q Consensus       141 ~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~  220 (394)
                      .    ..|+. -|...   ..++.+++++|+|.|.||+.+++.+ +++|++|+++|++.... +...+.+       +..
T Consensus       150 ~----~~g~~-~~~~~---~~~l~~~~V~ViGaG~iG~~~a~~l-~~~Ga~V~~~d~~~~~~-~~~~~~~-------g~~  212 (369)
T 2eez_A          150 P----KGGRG-VLLGG---VPGVAPASVVILGGGTVGTNAAKIA-LGMGAQVTILDVNHKRL-QYLDDVF-------GGR  212 (369)
T ss_dssp             G----GTSCC-CCTTC---BTBBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHT-------TTS
T ss_pred             h----cCCCc-eecCC---CCCCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHhc-------Cce
Confidence            1    11210 12111   1368999999999999999999996 79999999999987542 2111111       111


Q ss_pred             C-ccccccCCHHHHhcccCEEEEcCCCCh-hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec
Q 016162          221 P-VTWKRASSMDEVLREADVISLHPVLDK-TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (394)
Q Consensus       221 ~-~~~~~~~~l~ell~~aDiV~l~lPlt~-~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV  298 (394)
                      - .......++++++..+|+|+.|++... .+..++.++.++.||+|+++||++-.             .|   |+ +|+
T Consensus       213 ~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~  275 (369)
T 2eez_A          213 VITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VET  275 (369)
T ss_dssp             EEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC--------------------------
T ss_pred             EEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCc
Confidence            0 000112357788999999999998765 57788899999999999999999831             12   44 999


Q ss_pred             cCCCCCC-CCccccCCceE---------EcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016162          299 FEDEPYM-KPGLSEMKNAI---------VVPHIASA--SKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (394)
Q Consensus       299 ~~~EP~~-~~~L~~~~nvi---------lTPHia~~--t~~~~~~~~~~~~~ni~~~l~g~~~~~~v~  354 (394)
                      +  ||.+ +.|++..+++.         .|||+++.  +.+....+..++.+++..++.++++.+.+|
T Consensus       276 ~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~  341 (369)
T 2eez_A          276 I--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALLKGLN  341 (369)
T ss_dssp             ------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEE
T ss_pred             c--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHHhcCEE
Confidence            8  6643 45788889999         88998885  456678888888888877888887888775

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.81  E-value=6.2e-21  Score=192.59  Aligned_cols=154  Identities=20%  Similarity=0.261  Sum_probs=124.0

Q ss_pred             ccc-cCCCeEEEEecChHHHHHHHHHHhc-CCcEEEEEc-CchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          160 GNL-LKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       160 g~~-l~gktvGIIGlG~IG~~vA~~la~~-~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      |.+ |+|+|+||+|+|+||+.+|+++ ++ |||+|++++ ++...        |    +         ....+++++++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l-~~~~G~kVv~~sD~~g~~--------~----~---------~~gvdl~~L~~~  263 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIM-SEDFGMKVVAVSDSKGGI--------Y----N---------PDGLNADEVLKW  263 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEE--------E----E---------EEEECHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHH-HHhcCCEEEEEeCCCccc--------c----C---------ccCCCHHHHHHH
Confidence            356 9999999999999999999997 78 999999995 43210        0    0         011367777775


Q ss_pred             cCE-EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC--CccccCC
Q 016162          237 ADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMK  313 (394)
Q Consensus       237 aDi-V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~--~~L~~~~  313 (394)
                      +|. .++ +|+ ++|++ |+.+.|..||+ .++||+|||.+||+++ +++|+++.|.+++     +||++.  ++|+.++
T Consensus       264 ~d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~  333 (419)
T 1gtm_A          264 KNEHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEK  333 (419)
T ss_dssp             HHHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHT
T ss_pred             HHhcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcC
Confidence            554 233 565 67888 89999999998 5999999999999999 6999999999988     899753  4899999


Q ss_pred             ceEEcCCC----C-----------------CCcHHHHHHHHHHHHHHHHHHHc
Q 016162          314 NAIVVPHI----A-----------------SASKWTREGMATLAALNVLGKIK  345 (394)
Q Consensus       314 nvilTPHi----a-----------------~~t~~~~~~~~~~~~~ni~~~l~  345 (394)
                      ||++|||+    |                 +++.+..+++...+.+++.++++
T Consensus       334 ~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~  386 (419)
T 1gtm_A          334 GILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYN  386 (419)
T ss_dssp             TCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999    6                 56677888888888888888773

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.77  E-value=1.8e-17  Score=166.83  Aligned_cols=156  Identities=20%  Similarity=0.282  Sum_probs=115.3

Q ss_pred             cccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016162           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (394)
Q Consensus        93 ~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (394)
                      +++|+..+. .....+.+|+|.|++...+.+..+...+..-++.+.+.      +.           .+.++.|++|||+
T Consensus       155 TttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~------ra-----------tg~~L~GktVgIi  217 (436)
T 3h9u_A          155 TTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK------RA-----------TDVMIAGKTACVC  217 (436)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH------HH-----------HCCCCTTCEEEEE
T ss_pred             cCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHH------Hh-----------cCCcccCCEEEEE
Confidence            455654442 33455799999999876555544444433333322221      11           2357999999999


Q ss_pred             ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhh
Q 016162          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (394)
Q Consensus       172 GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~  251 (394)
                      |+|.||+.+|+++ ++|||+|+++|+++........         .|     + ...++++++++||+|+++    +.|.
T Consensus       218 G~G~IG~~vA~~L-ka~Ga~Viv~D~~p~~a~~A~~---------~G-----~-~~~sL~eal~~ADVVilt----~gt~  277 (436)
T 3h9u_A          218 GYGDVGKGCAAAL-RGFGARVVVTEVDPINALQAAM---------EG-----Y-QVLLVEDVVEEAHIFVTT----TGND  277 (436)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHH---------TT-----C-EECCHHHHTTTCSEEEEC----SSCS
T ss_pred             eeCHHHHHHHHHH-HHCCCEEEEECCChhhhHHHHH---------hC-----C-eecCHHHHHhhCCEEEEC----CCCc
Confidence            9999999999997 8999999999998755332211         11     1 235899999999999963    4688


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 016162          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~a  285 (394)
                      ++|+++.|+.||+|++|||+|||.+ ||.++|.+.
T Consensus       278 ~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          278 DIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             CccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            9999999999999999999999997 999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.73  E-value=3.1e-17  Score=165.14  Aligned_cols=229  Identities=14%  Similarity=0.151  Sum_probs=152.3

Q ss_pred             HHHHHHHhCCCeEEEecCCC--CCCCHHHHHHH---------hcCCCcEEEecCCccccHHHHHHh-cccCCcEEEEccc
Q 016162           28 RWINLLIEQDCRVEICTQKK--TILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAV   95 (394)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~--~~~~~~el~~~---------~~~~~d~ii~~~~~~i~~~~l~~l-~~l~~k~I~~~g~   95 (394)
                      +..+.|.+.|++|.+.....  ..++.++..+.         +. ++|+|+.. ..+ +++.++.+ +.+  ++|+..+.
T Consensus        28 ~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~-~adiil~v-k~p-~~~~i~~l~~~~--~li~~~~~  102 (401)
T 1x13_A           28 KTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVW-QSEIILKV-NAP-LDDEIALLNPGT--TLVSFIWP  102 (401)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGG-SSSEEECS-SCC-CHHHHTTCCTTC--EEEECCCG
T ss_pred             HHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHh-cCCeEEEe-CCC-CHHHHHHhcCCC--cEEEEecC
Confidence            35778888899887654332  23466666543         33 38887754 333 46667776 444  99999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHH---HHHHhchHHHHHHHHcCcc--CCCCCCc--ccccccCCCeE
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS---LAAARRIVEADEFMRAGLY--DGWLPNL--FVGNLLKGQTV  168 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~---L~~~R~~~~~~~~~~~g~~--~~w~~~~--~~g~~l~gktv  168 (394)
                      |+|++|++++.++||.+.+     .++|+|++.++.   ++..+.+.. ...++.+.|  ..|....  ..| ++.|++|
T Consensus       103 ~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g-~l~g~~V  175 (401)
T 1x13_A          103 AQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG-YRAIVEAAHEFGRFFTGQITAAG-KVPPAKV  175 (401)
T ss_dssp             GGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH-HHHHHHHHHHCSSCSSCEEETTE-EECCCEE
T ss_pred             CCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH-HHHHHHHHHhcccccCCceeecc-CcCCCEE
Confidence            9999999999999999964     555666655543   333333332 223333332  1121110  012 5889999


Q ss_pred             EEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc---------------c-------
Q 016162          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK---------------R-------  226 (394)
Q Consensus       169 GIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-------  226 (394)
                      +|+|+|.||..+++.+ +++|++|+++|++......  .+.+       |.......               .       
T Consensus       176 ~ViGaG~iG~~aa~~a-~~~Ga~V~v~D~~~~~~~~--~~~l-------Ga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  245 (401)
T 1x13_A          176 MVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQ--VQSM-------GAEFLELDFKEEAGSGDGYAKVMSDAFIKAE  245 (401)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCGGGHHH--HHHT-------TCEECCC--------CCHHHHHHSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHH--HHHc-------CCEEEEecccccccccccchhhccHHHHHHH
Confidence            9999999999999996 8999999999998764211  1111       11000000               0       


Q ss_pred             cCCHHHHhcccCEEEEc--CCCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccCH
Q 016162          227 ASSMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (394)
Q Consensus       227 ~~~l~ell~~aDiV~l~--lPlt~~t~~li~~~~l~~mk~gailIN~a--RG~~vde  279 (394)
                      ..++++++..+|+|+.|  +|. ..+.++++++.++.||+|+++||+|  ||+.+++
T Consensus       246 ~~~l~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          246 MELFAAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHHHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            01377888999999999  553 2366889999999999999999999  8887654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.71  E-value=1.3e-16  Score=159.66  Aligned_cols=258  Identities=15%  Similarity=0.171  Sum_probs=157.9

Q ss_pred             eeEEEeCCCCc--eEEEEeCCCCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHH-----------HHhcCCCcEEEec
Q 016162            5 VSIEVWNPNGK--YRVVSTKPMPGTRWINLLIEQDCRVEICTQKK--TILSVEDII-----------ALIGDKCDGVIGQ   69 (394)
Q Consensus         5 ~~~~~~~~~~~--~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~el~-----------~~~~~~~d~ii~~   69 (394)
                      |+|-|+++.+.  .||    .+.| +..+.|.+.|+++.+.....  ..++.++..           +.+. ++|+|+..
T Consensus         1 m~igv~~e~~~~E~Rv----~l~P-~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~-~adiil~v   74 (384)
T 1l7d_A            1 MKIAIPKERRPGEDRV----AISP-EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALS-QADVVWKV   74 (384)
T ss_dssp             CEEEECCCCSTTCCCC----SCCH-HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHS-SCSEEEEE
T ss_pred             CEEEEEccCCCCCccc----CCCH-HHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhc-CCCEEEEe
Confidence            45666666542  222    3444 35778888898886643321  234555554           3454 48988765


Q ss_pred             CCccc----cHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHH
Q 016162           70 LTEDW----GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFM  145 (394)
Q Consensus        70 ~~~~i----~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~  145 (394)
                       ..++    +++.++.++. +.++++..+.+.|+.+++++.++||.+++. +...+.+++..+. +|+..+.+. .+..+
T Consensus        75 -~~p~~~~~~~~~i~~l~~-~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~a-g~~av  149 (384)
T 1l7d_A           75 -QRPMTAEEGTDEVALIKE-GAVLMCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNLA-GYRAV  149 (384)
T ss_dssp             -ECCCCGGGSCCGGGGSCT-TCEEEEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHHH-HHHHH
T ss_pred             -cCcccccCCHHHHHhhcc-CCEEEEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHHH-HHHHH
Confidence             3344    6777788865 348888999999999999999999999984 2222222233333 233333321 22233


Q ss_pred             HcCccC--CCCCCcccc-cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh---hcC-
Q 016162          146 RAGLYD--GWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANG-  218 (394)
Q Consensus       146 ~~g~~~--~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~-  218 (394)
                      ..+.|.  .|.+....+ .++.|++|+|+|+|.||..+++.+ +++|++|+++|++..... . ...++....   ... 
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a-~~~Ga~V~~~d~~~~~~~-~-~~~~Ga~~~~i~~~~~  226 (384)
T 1l7d_A          150 IDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATA-KRLGAVVMATDVRAATKE-Q-VESLGGKFITVDDEAM  226 (384)
T ss_dssp             HHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCSTTHH-H-HHHTTCEECCC-----
T ss_pred             HHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H-HHHcCCeEEeeccccc
Confidence            333331  122211112 368999999999999999999996 899999999999875421 1 111211000   000 


Q ss_pred             ---CCCcccccc----------CCHHHHhcccCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCccc
Q 016162          219 ---EQPVTWKRA----------SSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (394)
Q Consensus       219 ---~~~~~~~~~----------~~l~ell~~aDiV~l~l--Plt~~t~~li~~~~l~~mk~gailIN~a--RG~~v  277 (394)
                         ...-++...          ..+++++..+|+|+.|+  |.+ .+.++++++.++.||+|+++||++  ||+.+
T Consensus       227 ~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          227 KTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             ------------------CCHHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             ccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence               000000000          11778889999999887  433 245788999999999999999999  76643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.69  E-value=8.2e-17  Score=161.95  Aligned_cols=156  Identities=16%  Similarity=0.211  Sum_probs=112.1

Q ss_pred             EcccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 016162           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (394)
Q Consensus        92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGI  170 (394)
                      -+++|+-.+- ....-...+++.|+..    ++..+-+-....+.+.+..+.  +|           ..+.++.|||+||
T Consensus       190 eTtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI--~R-----------atg~~L~GKTVgV  252 (464)
T 3n58_A          190 ETTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGI--RR-----------GTDVMMAGKVAVV  252 (464)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHH--HH-----------HHCCCCTTCEEEE
T ss_pred             ccccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHH--HH-----------hcCCcccCCEEEE
Confidence            3456665442 2222346688888765    455554444444443333221  11           1346899999999


Q ss_pred             EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (394)
Q Consensus       171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t  250 (394)
                      +|+|.||+.+|+++ ++|||+|+++|+++.........         |     + ...++++++++||+|+.+.    .|
T Consensus       253 IG~G~IGr~vA~~l-rafGa~Viv~d~dp~~a~~A~~~---------G-----~-~vv~LeElL~~ADIVv~at----gt  312 (464)
T 3n58_A          253 CGYGDVGKGSAQSL-AGAGARVKVTEVDPICALQAAMD---------G-----F-EVVTLDDAASTADIVVTTT----GN  312 (464)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHT---------T-----C-EECCHHHHGGGCSEEEECC----SS
T ss_pred             ECcCHHHHHHHHHH-HHCCCEEEEEeCCcchhhHHHhc---------C-----c-eeccHHHHHhhCCEEEECC----CC
Confidence            99999999999996 89999999999887543222111         1     1 2358999999999999874    46


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016162          251 YHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (394)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~  284 (394)
                      .++|+++.|+.||+|++|||++||.+ ||.++|.+
T Consensus       313 ~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          313 KDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             SSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             ccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            89999999999999999999999998 99988873

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.66  E-value=2e-15  Score=151.69  Aligned_cols=154  Identities=18%  Similarity=0.286  Sum_probs=107.5

Q ss_pred             cccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016162           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (394)
Q Consensus        93 ~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (394)
                      +++|+-.+- ....-+..++|.|+.+..+.+--+-..+.--++...+      .+           ..+..+.|++++|+
T Consensus       164 TttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi------~r-----------at~~~L~GktV~Vi  226 (435)
T 3gvp_A          164 SVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGL------KR-----------TTDMMFGGKQVVVC  226 (435)
T ss_dssp             CHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHHHHH------HH-----------HHCCCCTTCEEEEE
T ss_pred             cchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHHHHH------HH-----------hhCceecCCEEEEE
Confidence            455554432 2223357799999887554443332222111111111      11           12457999999999


Q ss_pred             ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhh
Q 016162          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (394)
Q Consensus       172 GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~  251 (394)
                      |+|.||+.+|+++ ++|||+|+++|+++.........         |     + ...++++++++||+|++|    +.|.
T Consensus       227 G~G~IGk~vA~~L-ra~Ga~Viv~D~dp~ra~~A~~~---------G-----~-~v~~Leeal~~ADIVi~a----tgt~  286 (435)
T 3gvp_A          227 GYGEVGKGCCAAL-KAMGSIVYVTEIDPICALQACMD---------G-----F-RLVKLNEVIRQVDIVITC----TGNK  286 (435)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHT---------T-----C-EECCHHHHTTTCSEEEEC----SSCS
T ss_pred             eeCHHHHHHHHHH-HHCCCEEEEEeCChhhhHHHHHc---------C-----C-EeccHHHHHhcCCEEEEC----CCCc
Confidence            9999999999997 89999999999987543222111         1     1 235899999999999996    4678


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 016162          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (394)
Q Consensus       252 ~li~~~~l~~mk~gailIN~aRG~~-vde~aL~  283 (394)
                      ++|+++.|+.||+|+++||+|||++ +|.++|.
T Consensus       287 ~lI~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          287 NVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             CSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             ccCCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            9999999999999999999999998 7876663

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.65  E-value=8.9e-18  Score=169.20  Aligned_cols=217  Identities=13%  Similarity=0.191  Sum_probs=156.7

Q ss_pred             cEEEEcccCccccchhHHh-----hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccC-CCCCCcccc-
Q 016162           88 KAFSNMAVGYNNVDVNAAN-----KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVG-  160 (394)
Q Consensus        88 k~I~~~g~G~d~id~~~a~-----~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~-~w~~~~~~g-  160 (394)
                      +.|.+.|+|+|++++..+.     ++++.+++.+|. ..+++++.+..++.+.|++....... .+.|. .|......+ 
T Consensus        83 ~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~  160 (404)
T 1gpj_A           83 RHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELAER  160 (404)
T ss_dssp             HHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHH
T ss_pred             hhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHHHH
Confidence            7788899999999999887     889999999998 56899999999999999876543222 22221 110000011 


Q ss_pred             --cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          161 --NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       161 --~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                        .++.|++|+|||+|.||+.+++.+ +.+|+ +|+++||+..+. ++..+.+       |..   .....++.+++..+
T Consensus       161 ~~~~l~g~~VlIiGaG~iG~~~a~~l-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~l~~~l~~a  228 (404)
T 1gpj_A          161 ELGSLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDL-------GGE---AVRFDELVDHLARS  228 (404)
T ss_dssp             HHSCCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHH-------TCE---ECCGGGHHHHHHTC
T ss_pred             HhccccCCEEEEEChHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCc---eecHHhHHHHhcCC
Confidence              157999999999999999999997 78999 999999987542 1111222       211   11234788889999


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhc--C----CCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCccc
Q 016162          238 DVISLHPVLDKTTYHLINKERLAT--M----KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLS  310 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~--m----k~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~-~~~L~  310 (394)
                      |+|+.|+|.   +.++++.+.++.  |    +++.++||++                             +|.. +++++
T Consensus       229 DvVi~at~~---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~  276 (404)
T 1gpj_A          229 DVVVSATAA---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVE  276 (404)
T ss_dssp             SEEEECCSS---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGG
T ss_pred             CEEEEccCC---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCcccc
Confidence            999999873   456677777776  3    2456666664                             3552 56899


Q ss_pred             cCCceEE--cCCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCCCC
Q 016162          311 EMKNAIV--VPHIASASKWTRE----------GMATLAALNVLGKIKGYPIW  350 (394)
Q Consensus       311 ~~~nvil--TPHia~~t~~~~~----------~~~~~~~~ni~~~l~g~~~~  350 (394)
                      ++|||++  |||+++.+.++++          .+....++++..|+.+.+..
T Consensus       277 ~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~~~  328 (404)
T 1gpj_A          277 NIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLKER  328 (404)
T ss_dssp             GSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence            9999999  9999998887654          56667778888888775543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.33  E-value=1.8e-12  Score=125.66  Aligned_cols=119  Identities=13%  Similarity=0.067  Sum_probs=92.0

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      ..+....++|||||+|.||..+|+.| ...|.+|++|||++.....         +...|     .....+++++++.||
T Consensus        15 ~~~~~~m~~I~iIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~---------l~~~g-----~~~~~~~~~~~~~aD   79 (310)
T 3doj_A           15 VPRGSHMMEVGFLGLGIMGKAMSMNL-LKNGFKVTVWNRTLSKCDE---------LVEHG-----ASVCESPAEVIKKCK   79 (310)
T ss_dssp             ---CCCSCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGGHH---------HHHTT-----CEECSSHHHHHHHCS
T ss_pred             CcccccCCEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH---------HHHCC-----CeEcCCHHHHHHhCC
Confidence            33456678999999999999999998 5789999999998765321         11112     223568999999999


Q ss_pred             EEEEcCCCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          239 VISLHPVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       239 iV~l~lPlt~~t~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +|++|+|....+..++  .++.+..+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        80 vvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           80 YTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9999999666666665  24566789999999999999998889999988775443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.33  E-value=1.8e-12  Score=125.42  Aligned_cols=115  Identities=21%  Similarity=0.230  Sum_probs=93.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++||+||+|.||..+|++| ..-|.+|++|||++++..+         +...|     .....++.|+++.||+|++|+|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L-~~~G~~v~v~dr~~~~~~~---------l~~~G-----a~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAVDG---------LVAAG-----ASAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHHHH---------HHHTT-----CEECSSHHHHHTTCSEEEECCS
T ss_pred             CEEEEeeehHHHHHHHHHH-HhCCCeEEEEcCCHHHHHH---------HHHcC-----CEEcCCHHHHHhcCCceeecCC
Confidence            6899999999999999998 5779999999999865322         11222     2345799999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD  297 (394)
                      ..+..+.++.  ...++.+++|.++||+++..+-+...+.+.+++..+  ..+|
T Consensus        69 ~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~--~~lD  120 (300)
T 3obb_A           69 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLD  120 (300)
T ss_dssp             CHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTC--EEEE
T ss_pred             chHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--EEEe
Confidence            8888887763  347889999999999999999999999999998754  3455

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.30  E-value=1.9e-10  Score=114.23  Aligned_cols=249  Identities=13%  Similarity=0.132  Sum_probs=135.8

Q ss_pred             eCCCCceEEEEeCC---------CCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHHhc-----CCCcEEEecCCcc
Q 016162           10 WNPNGKYRVVSTKP---------MPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIALIG-----DKCDGVIGQLTED   73 (394)
Q Consensus        10 ~~~~~~~~vlv~~~---------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~el~~~~~-----~~~d~ii~~~~~~   73 (394)
                      ..|-++|+|=|.+.         +.| +..+.|.+.|++|.+.....  ...+.++..+.=.     +.+|.|+. ... 
T Consensus        17 ~~~~~~m~IgvpkE~~~~E~RValtP-~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlk-Vk~-   93 (381)
T 3p2y_A           17 QGPGSMTLIGVPRESAEGERRVALVP-KVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVK-VNP-   93 (381)
T ss_dssp             ---CTTCEEEECCCCSTTCCCCSSCH-HHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEEC-SSC-
T ss_pred             cCCCcceEEEEEecCCCCCceecCCH-HHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEE-eCC-
Confidence            34555666655332         223 35788888999987655432  3456666543210     12565553 332 


Q ss_pred             ccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEec---CCCCC-ch------hhHHHHHHHHHHHHhchHHHHH
Q 016162           74 WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN---TPGVL-TE------TTAELAASLSLAAARRIVEADE  143 (394)
Q Consensus        74 i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n---~p~~~-~~------~vAE~~l~~~L~~~R~~~~~~~  143 (394)
                      .+++-++.+.. |-.+++....-.|.=-++++.++||...-   .|... +.      +++|.+=.+..      ..+..
T Consensus        94 p~~~e~~~l~~-g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av------~~aa~  166 (381)
T 3p2y_A           94 PTSDEISQLKP-GSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAV------LLGAS  166 (381)
T ss_dssp             CCHHHHTTSCT-TCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHH------HHHHH
T ss_pred             CChhHHhhccC-CCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHH------HHHHH
Confidence            33455566654 22333333333333345677889988854   33211 11      22222221111      11110


Q ss_pred             HHHcCccCCCCCCcccc-cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh-----c
Q 016162          144 FMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-----N  217 (394)
Q Consensus       144 ~~~~g~~~~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~-----~  217 (394)
                        .-++.   .+....+ ..+.+++|+|||+|.||..+|+.+ +++|++|++||+++... +. .+.++.....     .
T Consensus       167 --~l~~~---~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~-~~~lGa~~~~l~~~~~  238 (381)
T 3p2y_A          167 --LSTRF---VPMLTTAAGTVKPASALVLGVGVAGLQALATA-KRLGAKTTGYDVRPEVA-EQ-VRSVGAQWLDLGIDAA  238 (381)
T ss_dssp             --HCSSC---SSCEECSSCEECCCEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSGGGH-HH-HHHTTCEECCCC----
T ss_pred             --Hhhhh---hhhhhcccCCcCCCEEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHcCCeEEecccccc
Confidence              11111   1111111 257899999999999999999996 89999999999998642 11 1111100000     0


Q ss_pred             CCCCc--------cccccCCHHHHhcccCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCccc
Q 016162          218 GEQPV--------TWKRASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (394)
Q Consensus       218 ~~~~~--------~~~~~~~l~ell~~aDiV~l~l--Plt~~t~~li~~~~l~~mk~gailIN~a--RG~~v  277 (394)
                      +....        ......++++.++++|+|+.++  |. ..+..+++++.++.||||++|||+|  +|+.+
T Consensus       239 ~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          239 GEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             ccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence            00000        0001236788999999999875  53 3456789999999999999999997  55544

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.29  E-value=3.8e-12  Score=122.96  Aligned_cols=114  Identities=12%  Similarity=0.120  Sum_probs=89.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||..+|++| ..-|.+|++|||++++..+         +...     +.....++.|+++.||+|++|+|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~~---------l~~~-----G~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEIL-LEAGYELVVWNRTASKAEP---------LTKL-----GATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEC-------CT---------TTTT-----TCEECSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEecHHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH---------HHHc-----CCeEeCCHHHHHhcCCceeeecc
Confidence            5899999999999999998 5779999999998765211         1111     23345789999999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      ..+.....+....+..++++.++||+++..+-+.+.+.+.+.+..+...
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l  119 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV  119 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence            8777888888888999999999999999999999999999998765433

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.28  E-value=8e-12  Score=121.67  Aligned_cols=118  Identities=14%  Similarity=0.114  Sum_probs=93.4

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ....++|||||+|.||+.+|+.| ...|.+|++|||++.....         +...|     .....++++++++||+|+
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~---------l~~~g-----~~~~~~~~e~~~~aDvVi   92 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRL-CEAGYALQVWNRTPARAAS---------LAALG-----ATIHEQARAAARDADIVV   92 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHH-HHTTCEEEEECSCHHHHHH---------HHTTT-----CEEESSHHHHHTTCSEEE
T ss_pred             ccCCCEEEEECccHHHHHHHHHH-HhCCCeEEEEcCCHHHHHH---------HHHCC-----CEeeCCHHHHHhcCCEEE
Confidence            34667999999999999999998 5789999999998765321         11112     233568999999999999


Q ss_pred             EcCCCChhhhhcccH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          242 LHPVLDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       242 l~lPlt~~t~~li~~-~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      +|+|....+..++.. +.+..+++|.++||++++.+.+.+.+.+.+.+..+...
T Consensus        93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~  146 (320)
T 4dll_A           93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHL  146 (320)
T ss_dssp             ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEE
Confidence            999976677766643 56778999999999999999999999999987655443

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.28  E-value=2.3e-11  Score=118.02  Aligned_cols=131  Identities=15%  Similarity=0.075  Sum_probs=85.1

Q ss_pred             HHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch-hhHHHHHHHhhhhhhhhcCC
Q 016162          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGE  219 (394)
Q Consensus       142 ~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~  219 (394)
                      +++++.+.|.+|.+.. .......++|||||+|.||+.+|+.| ...|. +|++||+++ ....+..        ...| 
T Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~~~~~I~iIG~G~mG~~~A~~L-~~~G~~~V~~~dr~~~~~~~~~~--------~~~g-   70 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTEN-LYFQSNAMKLGFIGFGEAASAIASGL-RQAGAIDMAAYDAASAESWRPRA--------EELG-   70 (312)
T ss_dssp             ------------------------CEEEEECCSHHHHHHHHHH-HHHSCCEEEEECSSCHHHHHHHH--------HHTT-
T ss_pred             CcccccccccccCccc-ccccCCCCEEEEECccHHHHHHHHHH-HHCCCCeEEEEcCCCCHHHHHHH--------HHCC-
Confidence            3456777775554322 22334567999999999999999998 56788 999999973 3322221        1122 


Q ss_pred             CCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       220 ~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                          .....++++++++||+|++|+|...... .+ .+....++++.++||+++..+....++.+.+.+.
T Consensus        71 ----~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           71 ----VSCKASVAEVAGECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             ----CEECSCHHHHHHHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ----CEEeCCHHHHHhcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence                2234689999999999999999665544 33 6677889999999999999999999999988765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.28  E-value=5e-12  Score=122.36  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=93.1

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+...++|||||+|.||+.+|+.| ...|.+|++|||++..... .        ...|     .....++++++++||+|
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~-~--------~~~g-----~~~~~~~~e~~~~aDvV   69 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVL-LKQGKRVAIWNRSPGKAAA-L--------VAAG-----AHLCESVKAALSASPAT   69 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHHHH-H--------HHHT-----CEECSSHHHHHHHSSEE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-H--------HHCC-----CeecCCHHHHHhcCCEE
Confidence            356678999999999999999998 5789999999998865322 1        1112     12346899999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ++|+|....++.++.++.+..+++|.++||+++..+.+.+++.+.+++..+.
T Consensus        70 i~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           70 IFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             EECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             EEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            9999976667877754346667899999999999999999999999875443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.28  E-value=4.2e-11  Score=116.53  Aligned_cols=153  Identities=16%  Similarity=0.123  Sum_probs=100.6

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH-HhcccC
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREAD  238 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aD  238 (394)
                      ++..++|||||+|.||+.+|+.| +..|.  +|++||++.......         ...|...   ....++++ ++++||
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~~~a---------~~~G~~~---~~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKA---------VDLGIID---EGTTSIAKVEDFSPD   96 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHH---------HHTTSCS---EEESCTTGGGGGCCS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHHHHH---------HHCCCcc---hhcCCHHHHhhccCC
Confidence            34558999999999999999998 67788  999999987643211         1122211   12357788 899999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC---CC-CCCccccCCc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PY-MKPGLSEMKN  314 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~E---P~-~~~~L~~~~n  314 (394)
                      +|++|+|.. .+..++ ++....+++++++++++.......+++.+.+.. ++.+.. =++..|   |. ....|+....
T Consensus        97 vVilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~h-Pm~G~e~sG~~~A~~~Lf~g~~  172 (314)
T 3ggo_A           97 FVMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGGH-PIAGTEKSGVEYSLDNLYEGKK  172 (314)
T ss_dssp             EEEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECEE-ECCCCCCCSGGGCCTTTTTTCE
T ss_pred             EEEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEecC-cccCCcccchhhhhhhhhcCCE
Confidence            999999954 344444 566777999999999988765445566666543 211110 122222   11 1235788889


Q ss_pred             eEEcCCCCCCcHHHHHHH
Q 016162          315 AIVVPHIASASKWTREGM  332 (394)
Q Consensus       315 vilTPHia~~t~~~~~~~  332 (394)
                      +++||+ .+.+.++.+.+
T Consensus       173 ~il~~~-~~~~~~~~~~v  189 (314)
T 3ggo_A          173 VILTPT-KKTDKKRLKLV  189 (314)
T ss_dssp             EEECCC-TTSCHHHHHHH
T ss_pred             EEEEeC-CCCCHHHHHHH
Confidence            999998 34455554443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.24  E-value=2.2e-11  Score=120.16  Aligned_cols=108  Identities=23%  Similarity=0.304  Sum_probs=87.3

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (394)
                      ++.||||+|+|+|+||+.+|+++ +++||+|+++|++...  .++.+.+       +     . ...+.++++. .||++
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l-~~~GakVvvsD~~~~~--~~~a~~~-------g-----a-~~v~~~ell~~~~DIl  235 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTER--VAHAVAL-------G-----H-TAVALEDVLSTPCDVF  235 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH--HHHHHHT-------T-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCccH--HHHHHhc-------C-----C-EEeChHHhhcCcccee
Confidence            79999999999999999999997 7999999999998643  2222222       1     1 1236678887 99999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +-|     .+.++|+++.++.|| ..+++|.+|+.+.+++| .++|+++.+.
T Consensus       236 iP~-----A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          236 APC-----AMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             EEC-----SCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             cHh-----HHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            854     578899999999998 78999999999999888 5888888643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.23  E-value=6.2e-11  Score=112.65  Aligned_cols=142  Identities=17%  Similarity=0.149  Sum_probs=97.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l  242 (394)
                      ++|||||+|.||+.+|+.+ ...|.  +|++||++...... .        ...|...   ....++++.++ +||+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~~~-~--------~~~g~~~---~~~~~~~~~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISK-A--------VDLGIID---EGTTSIAKVEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHH-H--------HHTTSCS---EEESCGGGGGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHH-HhcCCCcEEEEEeCCHHHHHH-H--------HHCCCcc---cccCCHHHHhcCCCCEEEE
Confidence            5899999999999999998 57777  99999998754321 1        1112211   11347778889 9999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC---C-CCCccccCCceEEc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP---Y-MKPGLSEMKNAIVV  318 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP---~-~~~~L~~~~nvilT  318 (394)
                      |+|.. .+..++ .+....+++++++++++++.....+.+.+.+.++.+.+  .-++..|.   . ...+|+...+++++
T Consensus        69 avp~~-~~~~v~-~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~  144 (281)
T 2g5c_A           69 SSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILT  144 (281)
T ss_dssp             CSCHH-HHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEEC
T ss_pred             cCCHH-HHHHHH-HHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEe
Confidence            99943 455555 34566789999999999888766677887776531111  11232232   1 12357777889999


Q ss_pred             CCCCCC
Q 016162          319 PHIASA  324 (394)
Q Consensus       319 PHia~~  324 (394)
                      ||.++.
T Consensus       145 ~~~~~~  150 (281)
T 2g5c_A          145 PTKKTD  150 (281)
T ss_dssp             CCSSSC
T ss_pred             cCCCCC
Confidence            997654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.22  E-value=3.9e-11  Score=118.85  Aligned_cols=122  Identities=16%  Similarity=0.275  Sum_probs=96.4

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc---CE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA---DV  239 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a---Di  239 (394)
                      +.+++|||||+|.||+.+|+.| ...|.+|++||+++.....         +...+     .....+++++++.+   |+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L-~~~G~~V~v~dr~~~~~~~---------l~~~g-----~~~~~s~~e~~~~a~~~Dv   84 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRL-RKGGHECVVYDLNVNAVQA---------LEREG-----IAGARSIEEFCAKLVKPRV   84 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHH---------HHTTT-----CBCCSSHHHHHHHSCSSCE
T ss_pred             hcCCEEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHHHH---------HHHCC-----CEEeCCHHHHHhcCCCCCE
Confidence            5678999999999999999998 5789999999998765321         11112     22346899999999   99


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~  301 (394)
                      |++|+|.. .+..++ .+.+..+++|.++||++++...+...+.+.+.+..+......|+..
T Consensus        85 Vi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           85 VWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             EEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             EEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            99999966 677766 5677889999999999999999999999999887766555555543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.21  E-value=3.1e-10  Score=108.44  Aligned_cols=154  Identities=12%  Similarity=0.049  Sum_probs=104.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhh---hhhhhcC--CCC-------ccccccCCHHHH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANG--EQP-------VTWKRASSMDEV  233 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~--~~~-------~~~~~~~~l~el  233 (394)
                      ++|+|||.|.||+.+|+.+ ...|++|++||++.+.... ..+...   ......+  ...       .......++++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQT-AFHGFAVTAYDINTDALDA-AKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHHH-HHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            6899999999999999998 5789999999998765321 111100   0000001  000       001234688899


Q ss_pred             hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCC
Q 016162          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (394)
Q Consensus       234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~  313 (394)
                      +++||+|+.++|.+.+....+-++....+++++++++.+.+  +...+|.+++... ....++..|.       |.+.++
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~  152 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNN  152 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSC
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCc
Confidence            99999999999988777766667778889999999965544  3567888877643 3566776653       345667


Q ss_pred             ceEEcCCCCCCcHHHHHHH
Q 016162          314 NAIVVPHIASASKWTREGM  332 (394)
Q Consensus       314 nvilTPHia~~t~~~~~~~  332 (394)
                      .+.++|| ...+.++.+.+
T Consensus       153 lvevv~~-~~t~~~~~~~~  170 (283)
T 4e12_A          153 TAEVMGT-TKTDPEVYQQV  170 (283)
T ss_dssp             EEEEEEC-TTSCHHHHHHH
T ss_pred             eEEEEeC-CCCCHHHHHHH
Confidence            8899998 34455554443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.19  E-value=2.3e-11  Score=117.09  Aligned_cols=119  Identities=23%  Similarity=0.258  Sum_probs=93.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .++|||||+|.||+.+|+.| ...|.+|++||+++.....         +...+     .....+++++++ ||+|++|+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~---------~~~~g-----~~~~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRM-TEWPGGVTVYDIRIEAMTP---------LAEAG-----ATLADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHH-TTSTTCEEEECSSTTTSHH---------HHHTT-----CEECSSHHHHTT-SSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH---------HHHCC-----CEEcCCHHHHHh-CCEEEEEC
Confidence            36899999999999999998 6789999999998765221         11112     223568999999 99999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      |....++.++ ++.+..+++|.++||+++..+...+.+.+.+.+..+......|+.
T Consensus        79 p~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g  133 (296)
T 3qha_A           79 LDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSG  133 (296)
T ss_dssp             SSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEES
T ss_pred             CChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcC
Confidence            9766777777 677888999999999999999999999999987554443333443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.18  E-value=3e-11  Score=115.50  Aligned_cols=112  Identities=19%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||+.+|+.| ...|.+|++|||++.....         +...+     .....++++++++||+|++|+|
T Consensus         2 ~~i~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~---------~~~~g-----~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNL-VKAGCSVTIWNRSPEKAEE---------LAALG-----AERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGGHH---------HHHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH---------HHHCC-----CeecCCHHHHHhcCCEEEEEcC
Confidence            6899999999999999998 5789999999998765321         11112     2335689999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ....+..++.  ++.+..+++|.++||+++..+.+.+.+.+.+++..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            6666766662  5566789999999999999999999999988876444

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.18  E-value=6e-11  Score=112.19  Aligned_cols=196  Identities=17%  Similarity=0.126  Sum_probs=125.1

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC---CCcEEEecCCccccHHHHHHhcccCCcEEEEcccCccccchhHHh
Q 016162           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGD---KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (394)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~---~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~  106 (394)
                      -..+++.|.+..+...   ..+++++.+.+..   .++++.+.  .+..++++..++++  +-+++...|+|.++.    
T Consensus        21 ~~~~~~~g~~~~y~~~---~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~~~l--~~~a~~~gavn~i~~----   89 (263)
T 2d5c_A           21 AFALESLGLEGSYEAW---DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHLDWV--SPEAQRIGAVNTVLQ----   89 (263)
T ss_dssp             HHHHHHTTCCEEEEEE---ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHHcCCCCEEEEE---eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHHHHH--hHHHHHhCCCCcEEc----
Confidence            3456667776655433   1245555554431   14444443  34557777777766  666677778888865    


Q ss_pred             hCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHh
Q 016162          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (394)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (394)
                      +.|    +..|+|+..     .+++.++.|          .            +.+++| +++|||+|.||+.+++.| .
T Consensus        90 ~~g----~~~g~ntd~-----~g~~~~l~~----------~------------~~~l~~-~v~iiG~G~~g~~~a~~l-~  136 (263)
T 2d5c_A           90 VEG----RLFGFNTDA-----PGFLEALKA----------G------------GIPLKG-PALVLGAGGAGRAVAFAL-R  136 (263)
T ss_dssp             ETT----EEEEECCHH-----HHHHHHHHH----------T------------TCCCCS-CEEEECCSHHHHHHHHHH-H
T ss_pred             cCC----eEEEeCCCH-----HHHHHHHHH----------h------------CCCCCC-eEEEECCcHHHHHHHHHH-H
Confidence            234    223555543     244444332          1            236889 999999999999999997 6


Q ss_pred             cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCCh--hhhhcccHHHHhcCCC
Q 016162          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK--TTYHLINKERLATMKK  264 (394)
Q Consensus       187 ~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~--~t~~li~~~~l~~mk~  264 (394)
                      ..|++|+++||+.... ++..+.+       +.     . ..+++++ +++|+|++|+|...  .+...+.   ...+++
T Consensus       137 ~~g~~v~v~~r~~~~~-~~l~~~~-------~~-----~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~  198 (263)
T 2d5c_A          137 EAGLEVWVWNRTPQRA-LALAEEF-------GL-----R-AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPE  198 (263)
T ss_dssp             HTTCCEEEECSSHHHH-HHHHHHH-------TC-----E-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCS
T ss_pred             HCCCEEEEEECCHHHH-HHHHHHh-------cc-----c-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCC
Confidence            7889999999987542 2222222       11     1 2467788 99999999999662  2223443   466899


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          265 EAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       265 gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      |++++|++.+. .++ .|.+++++.
T Consensus       199 g~~viD~~~~p-~~t-~l~~~a~~~  221 (263)
T 2d5c_A          199 EGAAVDLVYRP-LWT-RFLREAKAK  221 (263)
T ss_dssp             SSEEEESCCSS-SSC-HHHHHHHHT
T ss_pred             CCEEEEeecCC-ccc-HHHHHHHHC
Confidence            99999999874 344 477776653

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.15  E-value=1.7e-10  Score=118.35  Aligned_cols=125  Identities=16%  Similarity=0.190  Sum_probs=96.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc---ccCEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVIS  241 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~  241 (394)
                      .++|||||+|.||+.+|+.| ...|.+|++|||++....+ .        ...+..+.......+++|+++   .+|+|+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L-~~~G~~V~v~dr~~~~~~~-l--------~~~g~~g~~i~~~~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKVDD-F--------LANEAKGTKVVGAQSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHHHH-H--------HHTTTTTSSCEECSSHHHHHHTBCSSCEEE
T ss_pred             CCEEEEEChhHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-H--------HhcccCCCceeccCCHHHHHhhccCCCEEE
Confidence            35899999999999999998 5789999999999865322 1        111111112222468999887   499999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      +++|..+.+..++ ++.+..+++|.++||++++...+...+.+.+.+..+.....-|..
T Consensus        74 l~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           74 LLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             ECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             EecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            9999877777777 677888999999999999999999999999988766555444544

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.15  E-value=9.7e-11  Score=113.97  Aligned_cols=114  Identities=16%  Similarity=0.071  Sum_probs=86.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchh--hHHHHHHHhhhhhhhhcCCCCccccccC-CHHHHhcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~aDiV  240 (394)
                      .++|||||+|.||..+|+.| ...| .+|++||+++.  ...++..+.    +...|.       .. ++++++++||+|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L-~~~G~~~V~~~dr~~~~~~~~~~~~~~----~~~~g~-------~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGL-GGRNAARLAAYDLRFNDPAASGALRAR----AAELGV-------EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECGGGGCTTTHHHHHHH----HHHTTC-------EEESSGGGGGGCSEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHcCCCeEEEEeCCCccccchHHHHHH----HHHCCC-------CCCCHHHHHhcCCEE
Confidence            36899999999999999998 5889 99999999862  000011110    111221       35 778899999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ++|+|.......+  .+....++++.++||+++..+...+.+.+.+++..+.
T Consensus        92 i~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~  141 (317)
T 4ezb_A           92 LSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS  141 (317)
T ss_dssp             EECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCE
T ss_pred             EEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            9999966555443  6677889999999999999999999999999876443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.15  E-value=3e-11  Score=115.43  Aligned_cols=112  Identities=16%  Similarity=0.085  Sum_probs=88.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||+.+|+.| ...|.+|++|||++..... .        ...|     .....++++++++||+|++|+|
T Consensus         2 ~~I~iiG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~-~--------~~~g-----~~~~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANL-VRAGFDVTVWNRNPAKCAP-L--------VALG-----ARQASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHHTCCEEEECSSGGGGHH-H--------HHHT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH-H--------HHCC-----CeecCCHHHHHHcCCEEEEEcC
Confidence            4899999999999999998 5679999999998765321 1        1112     2234689999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ....++.++.  ++.+..+++|.++||++++.+.+.+.+.+.+.+..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           67 DPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            6657766652  4566789999999999999999899999988875443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.13  E-value=3.8e-11  Score=115.81  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=88.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l~  243 (394)
                      .++|||||+|.||+.+|+.| ...|.+|++|||++.....         +...|.     .. ..+++++++.||+|++|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~---------~~~~g~-----~~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSC-LRAGLSTWGADLNPQACAN---------LLAEGA-----CGAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHH---------HHHTTC-----SEEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHHHH---------HHHcCC-----ccccCCHHHHHhcCCEEEEE
Confidence            46899999999999999998 5789999999998765321         111221     12 45788999999999999


Q ss_pred             CCCChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          244 PVLDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       244 lPlt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +|....++.++.  ++.+..+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            996666666653  4556789999999999999998889999988875443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.13  E-value=1.1e-10  Score=112.60  Aligned_cols=119  Identities=13%  Similarity=0.165  Sum_probs=86.4

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .++||||| +|.||+.+|+.| ...|.+|++||++..                           .++++.++.||+|++|
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l-~~~G~~V~~~~~~~~---------------------------~~~~~~~~~aDvVila   72 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDW---------------------------AVAESILANADVVIVS   72 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCG---------------------------GGHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCCHHHHHHHHHH-HhCCCeEEEEECCcc---------------------------cCHHHHhcCCCEEEEe
Confidence            56899999 999999999998 688999999998642                           1466788999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC--CCccccCCceEEcCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHI  321 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~--~~~L~~~~nvilTPHi  321 (394)
                      +|.. .+..++ ++....++++++++++++......+++.+.+  +      .++....|..  ..+++....+++|||-
T Consensus        73 vp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~------~~~v~~hP~~g~~~~~~~g~~~~l~~~~  142 (298)
T 2pv7_A           73 VPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH--T------GAVLGLHPMFGADIASMAKQVVVRCDGR  142 (298)
T ss_dssp             SCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--S------SEEEEEEECSCTTCSCCTTCEEEEEEEE
T ss_pred             CCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--C------CCEEeeCCCCCCCchhhcCCeEEEecCC
Confidence            9954 466666 4455678999999999876653334443332  1      2344445642  2346666689999974

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.12  E-value=6.1e-11  Score=111.05  Aligned_cols=109  Identities=11%  Similarity=0.152  Sum_probs=66.6

Q ss_pred             ccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhH-------------HHHHHHhhhhhhh
Q 016162          149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-------------LEKFVTAYGQFLK  215 (394)
Q Consensus       149 ~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~~~~  215 (394)
                      +|..|........++.+++|||||+|.||+.+|+.| ...|.+|++|||++...             ...+       ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-------~~   74 (245)
T 3dtt_A            3 SDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGAL-ADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQW-------LP   74 (245)
T ss_dssp             ----------------CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHTCC-------CCHHHH-------GG
T ss_pred             cccccccccccccccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHH-------Hh
Confidence            344454444566789999999999999999999998 57899999999987641             1111       01


Q ss_pred             hcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH-HhcCCCCcEEEEcCC
Q 016162          216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSR  273 (394)
Q Consensus       216 ~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~-l~~mk~gailIN~aR  273 (394)
                      ..+     .....++++++++||+|++|+|..... ..+. +. ...+ ++.++||++-
T Consensus        75 ~~~-----~~~~~~~~e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           75 EHP-----HVHLAAFADVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             GST-----TCEEEEHHHHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECCC
T ss_pred             hcC-----ceeccCHHHHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECCC
Confidence            111     112458899999999999999955433 3332 22 2233 7999999993

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.12  E-value=5.8e-11  Score=116.62  Aligned_cols=136  Identities=20%  Similarity=0.179  Sum_probs=93.2

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+.+++|||||+|+||+++|+.| +..|++|+++|++.....+.        ....|.     .. .++++++++||+|
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L-~~~G~~V~~~~~~~~~~~~~--------a~~~G~-----~~-~~~~e~~~~aDvV   76 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK--------AEAHGL-----KV-ADVKTAVAAADVV   76 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH--------HHHTTC-----EE-ECHHHHHHTCSEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHH-HHCcCEEEEEECChHHHHHH--------HHHCCC-----EE-ccHHHHHhcCCEE
Confidence            468899999999999999999998 67899999999986542221        111121     12 2888999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc-eEEeeccCCCCCCC-C---cccc---C
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF-RVGLDVFEDEPYMK-P---GLSE---M  312 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~-gaalDV~~~EP~~~-~---~L~~---~  312 (394)
                      ++|+|.. ....++.++....+++|+++++++  + ++.  ..     +.+. ..++||+..+|... .   .++.   .
T Consensus        77 ilavp~~-~~~~v~~~~i~~~l~~~~ivi~~~--g-v~~--~~-----~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g  145 (338)
T 1np3_A           77 MILTPDE-FQGRLYKEEIEPNLKKGATLAFAH--G-FSI--HY-----NQVVPRADLDVIMIAPKAPGHTVRSEFVKGGG  145 (338)
T ss_dssp             EECSCHH-HHHHHHHHHTGGGCCTTCEEEESC--C-HHH--HT-----TSSCCCTTCEEEEEEESSCSHHHHHHHHTTCC
T ss_pred             EEeCCcH-HHHHHHHHHHHhhCCCCCEEEEcC--C-chh--HH-----HhhcCCCCcEEEeccCCCCchhHHHHHhccCC
Confidence            9999943 345565546667899999999874  2 221  11     1222 34567777777422 1   2444   5


Q ss_pred             CceEEcCCCC
Q 016162          313 KNAIVVPHIA  322 (394)
Q Consensus       313 ~nvilTPHia  322 (394)
                      .++++|||-.
T Consensus       146 ~~~ii~~~~~  155 (338)
T 1np3_A          146 IPDLIAIYQD  155 (338)
T ss_dssp             CCEEEEEEEC
T ss_pred             CeEEEEecCC
Confidence            6789999954

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.12  E-value=1.5e-10  Score=118.19  Aligned_cols=147  Identities=17%  Similarity=0.243  Sum_probs=101.6

Q ss_pred             EcccCccccc-hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 016162           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (394)
Q Consensus        92 ~~g~G~d~id-~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGI  170 (394)
                      -+++|+..+. +.......|+|.|+.+..+.+..+...+.--+           +..+.+.      ..+..+.||+++|
T Consensus       208 eTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~s-----------l~dgi~r------~tg~~L~GKtVvV  270 (488)
T 3ond_A          208 ETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHS-----------LPDGLMR------ATDVMIAGKVAVV  270 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHH-----------HHHHHHH------HHCCCCTTCEEEE
T ss_pred             cccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHH-----------HHHHHHH------HcCCcccCCEEEE
Confidence            4567877653 22233577999999775544432322221111           1111110      1335799999999


Q ss_pred             EecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhh
Q 016162          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (394)
Q Consensus       171 IGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t  250 (394)
                      +|+|.||+.+|++| +++|++|+++|+++....+...         .+.      ...++++++..+|+|+.+.    .+
T Consensus       271 tGaGgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~Aa~---------~g~------dv~~lee~~~~aDvVi~at----G~  330 (488)
T 3ond_A          271 AGYGDVGKGCAAAL-KQAGARVIVTEIDPICALQATM---------EGL------QVLTLEDVVSEADIFVTTT----GN  330 (488)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHH---------TTC------EECCGGGTTTTCSEEEECS----SC
T ss_pred             ECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHH---------hCC------ccCCHHHHHHhcCEEEeCC----CC
Confidence            99999999999997 7999999999998754322211         111      2357888999999999764    45


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          251 YHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       251 ~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      .++++.+.|+.||++++++|++++.
T Consensus       331 ~~vl~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          331 KDIIMLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             SCSBCHHHHTTSCTTEEEEESSSTT
T ss_pred             hhhhhHHHHHhcCCCeEEEEcCCCC
Confidence            7789999999999999999999973

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.09  E-value=1.9e-10  Score=109.66  Aligned_cols=204  Identities=15%  Similarity=0.122  Sum_probs=121.4

Q ss_pred             CCCCceEEEEeCCCC----chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC----CCcEEEecCCccccHHHHHHh
Q 016162           11 NPNGKYRVVSTKPMP----GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGD----KCDGVIGQLTEDWGETLFAAL   82 (394)
Q Consensus        11 ~~~~~~~vlv~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~----~~d~ii~~~~~~i~~~~l~~l   82 (394)
                      |+.++.--|+-+|+.    +.-.-..+++.|.+..+....   .+++++.+.+..    +++++.+..+  ..++++..+
T Consensus         9 ~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~---~~~~~l~~~i~~l~~~~~~G~nvtiP--~k~~i~~~l   83 (275)
T 2hk9_A            9 NAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFE---INPEELKKAFEGFKALKVKGINVTVP--FKEEIIPLL   83 (275)
T ss_dssp             CTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEE---CCGGGHHHHHHHHHHHTCCEEEECTT--STTTTGGGC
T ss_pred             cCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEE---CCHHHHHHHHHHHHhCCCCEEEECcc--CHHHHHHHH
Confidence            344443345656543    221224556667665544332   244555554421    4678777643  445666666


Q ss_pred             cccCCcEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccc
Q 016162           83 SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL  162 (394)
Q Consensus        83 ~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~  162 (394)
                      +.+  .-.+...-++|.++.    +.|-    ..|+|+...     +++.++.|          .            |.+
T Consensus        84 d~l--~~~A~~~gavnti~~----~~g~----~~g~nTd~~-----G~~~~l~~----------~------------~~~  126 (275)
T 2hk9_A           84 DYV--EDTAKEIGAVNTVKF----ENGK----AYGYNTDWI-----GFLKSLKS----------L------------IPE  126 (275)
T ss_dssp             SEE--CHHHHHHTCCCEEEE----ETTE----EEEECCHHH-----HHHHHHHH----------H------------CTT
T ss_pred             HHh--hHHHHHhCCcceEEe----eCCE----EEeecCCHH-----HHHHHHHH----------h------------CCC
Confidence            655  444445556666653    2342    234455332     34433322          1            135


Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +.|++++|||.|.+|+.+++.| ...|++|+++||+.+.. ++..+       ..+     .....+++++++++|+|++
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L-~~~g~~V~v~~r~~~~~-~~l~~-------~~g-----~~~~~~~~~~~~~aDiVi~  192 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYAL-VKEGAKVFLWNRTKEKA-IKLAQ-------KFP-----LEVVNSPEEVIDKVQVIVN  192 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSHHHH-HHHTT-------TSC-----EEECSCGGGTGGGCSEEEE
T ss_pred             cCCCEEEEECchHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHH-------HcC-----CeeehhHHhhhcCCCEEEE
Confidence            7889999999999999999997 57788999999987542 11111       111     1223377888999999999


Q ss_pred             cCCCChh--hhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKT--TYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~--t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|....  +...++   ++.++++.+++|++.
T Consensus       193 atp~~~~~~~~~~i~---~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          193 TTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSSTTSSTTCCCSSC---GGGCCTTSEEEESSS
T ss_pred             eCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC
Confidence            9996542  223343   456899999999988

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.05  E-value=6.5e-10  Score=106.04  Aligned_cols=144  Identities=19%  Similarity=0.149  Sum_probs=95.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -++|||||+|.||+.+|+.|++ ++|.+|++||++...... .        ...|...   ....+++++++++|+|++|
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~-~--------~~~g~~~---~~~~~~~~~~~~aDvVila   73 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDI-A--------LERGIVD---EATADFKVFAALADVIILA   73 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHH-H--------HHTTSCS---EEESCTTTTGGGCSEEEEC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH-H--------HHcCCcc---cccCCHHHhhcCCCEEEEc
Confidence            3689999999999999998843 347899999998754321 1        1112110   1235677888999999999


Q ss_pred             CCCChhhhhcccHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee---ccCC---CCCC-CCccccCCce
Q 016162          244 PVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFED---EPYM-KPGLSEMKNA  315 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~-mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD---V~~~---EP~~-~~~L~~~~nv  315 (394)
                      +|.. ....++ .+.... ++++.+++++++......+.+.+.+.+..+..  ++   ++..   .|.. ..+++..+++
T Consensus        74 vp~~-~~~~v~-~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~--v~~~P~~g~~~~g~~~a~~~l~~g~~~  149 (290)
T 3b1f_A           74 VPIK-KTIDFI-KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQF--VGSHPMAGSHKSGAVAANVNLFENAYY  149 (290)
T ss_dssp             SCHH-HHHHHH-HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEE--EEEEEC-----CCTTSCCTTTTTTSEE
T ss_pred             CCHH-HHHHHH-HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEE--EEeCCcCCCCcchHHHhhHHHhCCCeE
Confidence            9943 335555 345567 89999999999887766678888776522222  22   1111   2221 2357777889


Q ss_pred             EEcCCCCCC
Q 016162          316 IVVPHIASA  324 (394)
Q Consensus       316 ilTPHia~~  324 (394)
                      +++||.++.
T Consensus       150 ~~~~~~~~~  158 (290)
T 3b1f_A          150 IFSPSCLTK  158 (290)
T ss_dssp             EEEECTTCC
T ss_pred             EEecCCCCC
Confidence            999997654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.03  E-value=4.5e-10  Score=112.40  Aligned_cols=232  Identities=17%  Similarity=0.204  Sum_probs=127.2

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHHHHh---c-----CCCcEEEecCCccccHHHHHHhcccCCcEEEEcccCcc
Q 016162           29 WINLLIEQDCRVEICTQKK--TILSVEDIIALI---G-----DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYN   98 (394)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~~el~~~~---~-----~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~G~d   98 (394)
                      ..+.|.+.|++|.+.....  ...+.++..+.=   .     .++|.|+.- ..+ +++-++.+.. |-.+++...-.-|
T Consensus        47 ~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkV-k~p-~~~e~~~l~~-g~~l~~~lh~~~~  123 (405)
T 4dio_A           47 SVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKV-RRP-SAQEISGYRS-GAVVIAIMDPYGN  123 (405)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEE-ECC-CTTTGGGSCT-TCEEEEECCCTTC
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEe-CCC-ChhHHhhcCC-CcEEEEEeccccC
Confidence            5778888899987765532  234555554310   0     035665532 111 2233344543 2233443333223


Q ss_pred             ccchhHHhhCCceEec---CCCCC-c------hhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc-cccCCCe
Q 016162           99 NVDVNAANKYGIAVGN---TPGVL-T------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQT  167 (394)
Q Consensus        99 ~id~~~a~~~gI~v~n---~p~~~-~------~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g-~~l~gkt  167 (394)
                      .=-++++.++||...-   .|... +      .+++|.+=.+.      ...+..  .-++.   .+....+ -.+.+.+
T Consensus       124 ~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~A------v~~aa~--~l~~~---~~~l~t~~g~v~~~k  192 (405)
T 4dio_A          124 EEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQA------VIDAAY--EYDRA---LPMMMTAAGTVPAAK  192 (405)
T ss_dssp             HHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHH------HHHHHH--HCSSC---SSCEEETTEEECCCE
T ss_pred             HHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHH------HHHHHH--HhHhh---hchhhccCCCcCCCE
Confidence            3334667788988854   33211 1      12233222111      111110  01111   1111111 2478999


Q ss_pred             EEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-------CCCCcccc----------ccCCH
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-------GEQPVTWK----------RASSM  230 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~----------~~~~l  230 (394)
                      |+|||+|.||..+|+.+ +++|++|++||+++... +. .+.++......       +.....+.          ...++
T Consensus       193 V~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~-~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l  269 (405)
T 4dio_A          193 IFVMGAGVAGLQAIATA-RRLGAVVSATDVRPAAK-EQ-VASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV  269 (405)
T ss_dssp             EEEECCSHHHHHHHHHH-HHTTCEEEEECSSTTHH-HH-HHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred             EEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HH-HHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence            99999999999999996 89999999999997642 21 11111100000       00000000          01367


Q ss_pred             HHHhcccCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccC
Q 016162          231 DEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (394)
Q Consensus       231 ~ell~~aDiV~l~l--Plt~~t~~li~~~~l~~mk~gailIN~a--RG~~vd  278 (394)
                      ++.+++||+|+.++  |.. .+..+++++.++.||||++|||+|  +|+.++
T Consensus       270 ~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e  320 (405)
T 4dio_A          270 AEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIE  320 (405)
T ss_dssp             HHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBT
T ss_pred             HHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCcc
Confidence            89999999998874  533 467889999999999999999998  666544

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.98  E-value=5.3e-10  Score=109.99  Aligned_cols=132  Identities=14%  Similarity=0.130  Sum_probs=87.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc----cCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----ADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----aDiV  240 (394)
                      -++|||||+|+||+++|+.| +..|.+|++||+++......         ...|.     ....++++++++    ||+|
T Consensus         8 ~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~~a---------~~~G~-----~~~~~~~e~~~~a~~~aDlV   72 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDL-HAANHSVFGYNRSRSGAKSA---------VDEGF-----DVSADLEATLQRAAAEDALI   72 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHHHHH---------HHTTC-----CEESCHHHHHHHHHHTTCEE
T ss_pred             CCEEEEEeecHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHcCC-----eeeCCHHHHHHhcccCCCEE
Confidence            35899999999999999998 68899999999987643211         11222     224688888765    6999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCccc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLS  310 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~----------~~~L~  310 (394)
                      ++|+|. ..+..++ ++ +..++++++++|++.-+..-.+++.+.+.       ...+....|..          ...|+
T Consensus        73 ilavP~-~~~~~vl-~~-l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~-------~~~~v~~HPmaG~e~sG~~aa~~~Lf  142 (341)
T 3ktd_A           73 VLAVPM-TAIDSLL-DA-VHTHAPNNGFTDVVSVKTAVYDAVKARNM-------QHRYVGSHPMAGTANSGWSASMDGLF  142 (341)
T ss_dssp             EECSCH-HHHHHHH-HH-HHHHCTTCCEEECCSCSHHHHHHHHHTTC-------GGGEECEEECCSCC-CCGGGCCSSTT
T ss_pred             EEeCCH-HHHHHHH-HH-HHccCCCCEEEEcCCCChHHHHHHHHhCC-------CCcEecCCccccccccchhhhhhHHh
Confidence            999994 4566666 23 34458999999998755322223322221       11222334432          13588


Q ss_pred             cCCceEEcCCC
Q 016162          311 EMKNAIVVPHI  321 (394)
Q Consensus       311 ~~~nvilTPHi  321 (394)
                      ...++++||+-
T Consensus       143 ~g~~~iltp~~  153 (341)
T 3ktd_A          143 KRAVWVVTFDQ  153 (341)
T ss_dssp             TTCEEEECCGG
T ss_pred             cCCeEEEEeCC
Confidence            88889999974

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.97  E-value=1.1e-09  Score=104.71  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|+|||+|.||+.+|+.| ...|.+|++||++..... ..        ...|     .....+++++++.+|+|++|+|
T Consensus         6 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~-~~--------~~~g-----~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAIA-DV--------IAAG-----AETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH-HH--------HHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-HH--------HHCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            4899999999999999998 577999999999875421 11        1112     1234688999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ....+..++.  ++....+++|.++|++++|...+.+.|.+.+.+.
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  116 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK  116 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            6666666663  3455778999999999999887788899988764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.97  E-value=1.2e-09  Score=104.64  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=85.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|+|||+|.||+.+|+.| ...|.+|++||+++.... .        +...|     .....++++++.++|+|++|+|
T Consensus         5 ~~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~-~--------~~~~g-----~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINL-LKEGVTVYAFDLMEANVA-A--------VVAQG-----AQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHH-HHTTCEEEEECSSHHHHH-H--------HHTTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-H--------HHHCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            5899999999999999998 577999999999875421 1        11112     2234688999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ....+..++.  ++....++++.++|++++|...+.+.|.+.+.+.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~  115 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK  115 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7666777764  3556778999999999999877788888888764

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.97  E-value=3.1e-09  Score=109.08  Aligned_cols=119  Identities=13%  Similarity=0.123  Sum_probs=90.2

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cC
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---AD  238 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aD  238 (394)
                      ....++|||||+|.||+.+|+.| ...|.+|.+|||+++... ...+.+       +.  .+.....+++++++.   +|
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~L-a~~G~~V~v~~r~~~~~~-~l~~~~-------~~--~gi~~~~s~~e~v~~l~~aD   80 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNI-ESRGYTVSIFNRSREKTE-EVIAEN-------PG--KKLVPYYTVKEFVESLETPR   80 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHH-HTTTCCEEEECSSHHHHH-HHHHHS-------TT--SCEEECSSHHHHHHTBCSSC
T ss_pred             ccCCCeEEEEccHHHHHHHHHHH-HhCCCeEEEEeCCHHHHH-HHHhhC-------CC--CCeEEeCCHHHHHhCCCCCC
Confidence            35567899999999999999998 577999999999876532 211111       00  112234689998887   99


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +|++++|....+..++ ++....+++|.++||++.|...+...+.+.+.+..+.
T Consensus        81 vVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           81 RILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             EEEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            9999999777788877 4667889999999999999988888898888775443

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.93  E-value=6.7e-09  Score=98.30  Aligned_cols=144  Identities=13%  Similarity=0.059  Sum_probs=91.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|+|||+|.||+.+|+.| ...|.+|++||++...... .        ...+...   ....+++++ .++|+|++|+|
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~~-~--------~~~g~~~---~~~~~~~~~-~~~D~vi~av~   66 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEK-A--------VERQLVD---EAGQDLSLL-QTAKIIFLCTP   66 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHH-H--------HHTTSCS---EEESCGGGG-TTCSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH-H--------HhCCCCc---cccCCHHHh-CCCCEEEEECC
Confidence            3799999999999999998 5778999999998754321 1        1112111   123577788 99999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC---CCC-CCccccCCceEEcCCC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PYM-KPGLSEMKNAIVVPHI  321 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~E---P~~-~~~L~~~~nvilTPHi  321 (394)
                      . ..+..++ .+....+++++++|++++......+.+.+.+.  ++.+. .-++..+   |.. ...++..+.++++|+-
T Consensus        67 ~-~~~~~~~-~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~  141 (279)
T 2f1k_A           67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTE  141 (279)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECT
T ss_pred             H-HHHHHHH-HHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCC
Confidence            3 3455555 45556789999999997766655555555433  22221 1222111   211 1245666678999974


Q ss_pred             CCCcHHHH
Q 016162          322 ASASKWTR  329 (394)
Q Consensus       322 a~~t~~~~  329 (394)
                      ++ +.+..
T Consensus       142 ~~-~~~~~  148 (279)
T 2f1k_A          142 YT-DPEQL  148 (279)
T ss_dssp             TC-CHHHH
T ss_pred             CC-CHHHH
Confidence            33 44433

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.92  E-value=1.4e-09  Score=103.81  Aligned_cols=108  Identities=22%  Similarity=0.279  Sum_probs=81.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||+.+|+.| ...|.+|++|||+..... .        +...|     .....+++++++.+|+|++|+|
T Consensus         1 m~i~iiG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~~-~--------~~~~g-----~~~~~~~~~~~~~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNL-MKHGYPLIIYDVFPDACK-E--------FQDAG-----EQVVSSPADVAEKADRIITMLP   65 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHTTCCEEEECSSTHHHH-H--------HHTTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CeEEEEeccHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHcC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            3799999999999999998 577999999999875421 1        11112     2234688999999999999999


Q ss_pred             CChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       246 lt~~t~~li~~--~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      ....+..++..  ..++.++++.++|+++...+.+.+.+.+.+.+
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            76677766643  24567899999999888777666777777764

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.91  E-value=1.3e-08  Score=97.99  Aligned_cols=146  Identities=18%  Similarity=0.157  Sum_probs=93.5

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      -+.|+|||||+|.||+.+|+.+ . .|.+|++||++++..... .+.+.   +.   ...+.....++++ +++||+|+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~l-a-aG~~V~v~d~~~~~~~~~-~~~l~---~~---~~~~i~~~~~~~~-~~~aDlVie   79 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAI-A-SKHEVVLQDVSEKALEAA-REQIP---EE---LLSKIEFTTTLEK-VKDCDIVME   79 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHHHHH-HHHSC---GG---GGGGEEEESSCTT-GGGCSEEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHH-H-cCCEEEEEECCHHHHHHH-HHHHH---HH---HhCCeEEeCCHHH-HcCCCEEEE
Confidence            4678999999999999999998 5 799999999998653221 11100   00   0001222356766 899999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI  321 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHi  321 (394)
                      |+|.+.+.+..+-.+ +..+ ++++++ |+|.-.+   ..+.+++. ...+..++..|.  |.     ..++-+.++|+-
T Consensus        80 avpe~~~vk~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv-----~~~~lveiv~g~  146 (293)
T 1zej_A           80 AVFEDLNTKVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PP-----HVMPLVEIVISR  146 (293)
T ss_dssp             CCCSCHHHHHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--ST-----TTCCEEEEEECT
T ss_pred             cCcCCHHHHHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--cc-----ccCCEEEEECCC
Confidence            999888766555333 6666 999884 7877443   45554443 234567777776  43     234667777752


Q ss_pred             CCCcHHHHHHH
Q 016162          322 ASASKWTREGM  332 (394)
Q Consensus       322 a~~t~~~~~~~  332 (394)
                       ..+.++.+++
T Consensus       147 -~t~~~~~~~~  156 (293)
T 1zej_A          147 -FTDSKTVAFV  156 (293)
T ss_dssp             -TCCHHHHHHH
T ss_pred             -CCCHHHHHHH
Confidence             2445555543

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.90  E-value=7.2e-09  Score=106.81  Aligned_cols=117  Identities=15%  Similarity=0.212  Sum_probs=89.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVIS  241 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~  241 (394)
                      ..+|||||+|.||+.+|+.| ...|.+|.+|||++....+ ..+.      ...  +.+.....+++++++.   +|+|+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~L-a~~G~~V~v~dr~~~~~~~-l~~~------~~~--~~gi~~~~s~~e~v~~l~~aDvVi   79 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNA-ADHGFTVCAYNRTQSKVDH-FLAN------EAK--GKSIIGATSIEDFISKLKRPRKVM   79 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSSHHHHH-HHHT------TTT--TSSEECCSSHHHHHHTSCSSCEEE
T ss_pred             CCCEEEEeeHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-HHcc------ccc--CCCeEEeCCHHHHHhcCCCCCEEE
Confidence            35899999999999999998 4679999999998865322 1110      000  0112334689998887   99999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +++|....+..++ ++....+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        80 l~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           80 LLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             ECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            9999777778777 5667889999999999999988888899888764343

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.90  E-value=3.4e-08  Score=100.62  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=96.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--------cccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--------TWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~~a  237 (394)
                      ++|+|||.|.||..+|..++ ..|.+|++||++.+.......+.+ +.+...|....        ......+++ .+++|
T Consensus        55 ~kVaVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~a~~~i~~~l-~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~a  131 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFG-LAGIETFLVVRNEQRCKQELEVMY-AREKSFKRLNDKRIEKINANLKITSDFH-KLSNC  131 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHH-HHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCeEEEEECcHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence            68999999999999999984 679999999999873221111111 01112222110        111235675 68999


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEE
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIV  317 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvil  317 (394)
                      |+|+.++|.+.+.+.-+-++..+.++++++|++.+.+  +....|.+.+.. .-...++..|.  |..     .++-+.+
T Consensus       132 DlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvEI  201 (460)
T 3k6j_A          132 DLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVEI  201 (460)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEEE
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEEE
Confidence            9999999987766554446677889999999654443  344566655543 34677888776  432     2344667


Q ss_pred             cCCCCCCcHHHHHHHH
Q 016162          318 VPHIASASKWTREGMA  333 (394)
Q Consensus       318 TPHia~~t~~~~~~~~  333 (394)
                      +|+- .++.++.+.+.
T Consensus       202 v~g~-~Ts~e~~~~~~  216 (460)
T 3k6j_A          202 IYGS-HTSSQAIATAF  216 (460)
T ss_dssp             ECCS-SCCHHHHHHHH
T ss_pred             EeCC-CCCHHHHHHHH
Confidence            7752 34455555443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.89  E-value=1.3e-09  Score=103.83  Aligned_cols=108  Identities=17%  Similarity=0.134  Sum_probs=83.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||+.+|+.| ...|.+|++|| +.... +.        +...|     .....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~-~~~~~-~~--------~~~~g-----~~~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINL-ARAGHQLHVTT-IGPVA-DE--------LLSLG-----AVNVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHH-HHTTCEEEECC-SSCCC-HH--------HHTTT-----CBCCSSHHHHHHTCSEEEECCS
T ss_pred             CEEEEEccCHHHHHHHHHH-HhCCCEEEEEc-CHHHH-HH--------HHHcC-----CcccCCHHHHHhcCCEEEEECC
Confidence            4899999999999999998 57799999999 65432 11        11112     1234688999999999999999


Q ss_pred             CChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       246 lt~~t~~li~~--~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ....+..++..  +....+++|.++|++++|...+.+.|.+.+.+.
T Consensus        68 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  113 (295)
T 1yb4_A           68 DTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM  113 (295)
T ss_dssp             SHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            66556666642  455678999999999999888888999988863

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.87  E-value=3.1e-09  Score=102.59  Aligned_cols=109  Identities=15%  Similarity=0.147  Sum_probs=83.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||+.+|+.| ...|.+|++||++..... ..        ...|     .....+++++++++|+|++|+|
T Consensus        31 ~~I~iIG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~~-~~--------~~~g-----~~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNL-LKMGHTVTVWNRTAEKCD-LF--------IQEG-----ARLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSSGGGGH-HH--------HHTT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-HH--------HHcC-----CEEcCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999998 577899999999875421 11        1112     1224578899999999999999


Q ss_pred             CChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       246 lt~~t~~li~~--~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ....+..++..  ..+..++++.++|+++++.....+.|.+.+...
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  141 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSR  141 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            66666665543  245678999999999998877778888888653

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.86  E-value=1.1e-08  Score=104.81  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=88.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l  242 (394)
                      ++|||||+|.||+.+|+.| ...|.+|.+|||+.+.. +...+.+       +.  .+.....+++++++.   +|+|++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L-~~~G~~V~v~dr~~~~~-~~l~~~~-------~~--~gi~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNV-ESRGYTVAIYNRTTSKT-EEVFKEH-------QD--KNLVFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHHHT-------TT--SCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHhC-------cC--CCeEEeCCHHHHHhhccCCCEEEE
Confidence            5899999999999999998 56789999999987643 2221111       00  112234689998876   999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~g  293 (394)
                      |+|....+..++ ++....+++|.++|+++.|...+.+.+.+.+.+..+..
T Consensus        75 avp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~  124 (474)
T 2iz1_A           75 MVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF  124 (474)
T ss_dssp             CCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEE
T ss_pred             EccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeE
Confidence            999776777777 45667899999999999998888888988887644443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.86  E-value=5.8e-09  Score=98.93  Aligned_cols=106  Identities=18%  Similarity=0.221  Sum_probs=81.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|+|||+|.||+.+|+.| .. |.+|++||++...... ..        ..|.     .... +++++..+|+|++|+|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l-~~-g~~V~~~~~~~~~~~~-~~--------~~g~-----~~~~-~~~~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHL-AR-RFPTLVWNRTFEKALR-HQ--------EEFG-----SEAV-PLERVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HT-TSCEEEECSSTHHHHH-HH--------HHHC-----CEEC-CGGGGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-hC-CCeEEEEeCCHHHHHH-HH--------HCCC-----cccC-HHHHHhCCCEEEEeCC
Confidence            4799999999999999998 56 9999999998754321 11        1111     1122 6677889999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ....+..++ ++....++++.++|+++++...+.+.|.+.+.+.
T Consensus        65 ~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  107 (289)
T 2cvz_A           65 TTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREK  107 (289)
T ss_dssp             SHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            655566655 5556778999999999999888888999988864

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.83  E-value=7.8e-09  Score=102.42  Aligned_cols=108  Identities=17%  Similarity=0.245  Sum_probs=81.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (394)
                      +|.||||+|+|+|+||+.+|+.| ..+|++|+++|++... ..++.+.|       +.      ...+.++++. +||++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L-~~~GakVvv~D~~~~~-l~~~a~~~-------ga------~~v~~~~ll~~~~DIv  234 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEE-------GA------DAVAPNAIYGVTCDIF  234 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHH-------CC------EECCGGGTTTCCCSEE
T ss_pred             CCCcCEEEEECchHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc-------CC------EEEChHHHhccCCcEe
Confidence            69999999999999999999997 7999999999998753 23232322       11      1235566665 89999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +.|.     +.++|+.+.++.|+ ..++++.+++.+.+++ ..+.|+++.+
T Consensus       235 ip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          235 APCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             EECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             eccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            9874     56788888888884 6789999999988866 4566666554

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.83  E-value=1.3e-08  Score=104.63  Aligned_cols=118  Identities=15%  Similarity=0.220  Sum_probs=87.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc---ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l  242 (394)
                      ++|||||+|.||+.+|+.| ...|.+|.+|||+..... ...+.     +..+   .+.....++++++.   .+|+|++
T Consensus         3 m~IgvIG~G~mG~~lA~~L-a~~G~~V~v~dr~~~~~~-~l~~~-----~~~g---~gi~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKVD-DFLAN-----EAKG---TKVLGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHHH-HHHHT-----TTTT---SSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHhc-----cccC---CCeEEeCCHHHHHhhccCCCEEEE
Confidence            4799999999999999998 577899999999876532 21110     0000   11223468888874   8999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      |+|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+...
T Consensus        73 aVp~~~~v~~vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v  123 (482)
T 2pgd_A           73 LVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (482)
T ss_dssp             CSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             eCCChHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEe
Confidence            999766777777 456678999999999999988888888888876444433

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.83  E-value=1.8e-08  Score=103.35  Aligned_cols=125  Identities=17%  Similarity=0.205  Sum_probs=90.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l  242 (394)
                      ++|||||+|.||+.+|+.| ...|.+|.+|||+.+.. +...+.++..  .   .+.......+++++++.   +|+|++
T Consensus         2 MkIgVIG~G~mG~~lA~~L-a~~G~~V~v~dr~~~~~-~~l~~~~g~~--~---~~~~i~~~~~~~e~v~~l~~aDvVil   74 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNI-AEKGFKVAVFNRTYSKS-EEFMKANASA--P---FAGNLKAFETMEAFAASLKKPRKALI   74 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHHHTTTS--T---TGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHhcCCC--C---CCCCeEEECCHHHHHhcccCCCEEEE
Confidence            3799999999999999998 57799999999987543 2221111100  0   00112335689898874   999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV  298 (394)
                      |+|....+..++ ++....+++|.++|+++.|...+.+.+.+.+.+..+.....-|
T Consensus        75 aVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv  129 (478)
T 1pgj_A           75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGI  129 (478)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             ecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeec
Confidence            999766777777 4566778999999999999888888899888875444333333

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.81  E-value=1.8e-08  Score=103.06  Aligned_cols=147  Identities=14%  Similarity=0.197  Sum_probs=92.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhc-CCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCHHHHhcc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      ++|+|||+|.||..+|..|++. .|.+|++||++...... ..+..        .+.+... . ..+.....++++.++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~-l~~g~~~i~e~~l~~~~~~~-~-~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINA-WNSPTLPIYEPGLKEVVESC-R-GKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHH-HTSSSCSSCCTTHHHHHHHH-B-TTTEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHH-HhCCCCCcCCCCHHHHHHHh-h-cCCEEEECCHHHHHhc
Confidence            5899999999999999998532 28999999998764321 10000        0000000 0 0012234688889999


Q ss_pred             cCEEEEcCCCChhhhh-----------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee---ccC
Q 016162          237 ADVISLHPVLDKTTYH-----------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFE  300 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~-----------li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD---V~~  300 (394)
                      ||+|++|+|......+           +..  +...+.+++|+++|+.|+..+-..+.+.+.+++....  .+|   ++.
T Consensus        83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~  160 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSN  160 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEEC
T ss_pred             CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeC
Confidence            9999999984433222           111  3355678999999999998887788898888875422  233   345


Q ss_pred             CCCCCCC----ccccCCceEE
Q 016162          301 DEPYMKP----GLSEMKNAIV  317 (394)
Q Consensus       301 ~EP~~~~----~L~~~~nvil  317 (394)
                      .|+....    .+...+++++
T Consensus       161 Pe~~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          161 PEFLAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEE
T ss_pred             HHHhhcccchhhccCCCEEEE
Confidence            5554321    2455566653

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.77  E-value=1.2e-08  Score=95.68  Aligned_cols=102  Identities=13%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcC--chhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|||||+|.||+.+|+.| ...|.+|++||+  .... .+..        ...|.     .  .++++++.++|+|++|
T Consensus         1 M~I~iIG~G~mG~~la~~l-~~~g~~V~~~~~~~~~~~-~~~~--------~~~g~-----~--~~~~~~~~~aDvvi~~   63 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPST-IERA--------RTVGV-----T--ETSEEDVYSCPVVISA   63 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHH-HHHH--------HHHTC-----E--ECCHHHHHTSSEEEEC
T ss_pred             CeEEEEechHHHHHHHHHH-HHCCCeEEEeCCccCHHH-HHHH--------HHCCC-----c--CCHHHHHhcCCEEEEE
Confidence            3799999999999999998 567899999988  3322 1111        11121     1  4677889999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      +|.......+  .+....+++  ++||++++.+.+.+.|.+.+.+
T Consensus        64 v~~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           64 VTPGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             SCGGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence            9965555543  456667776  9999998887777888888765

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.77  E-value=4.6e-09  Score=106.76  Aligned_cols=124  Identities=20%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             cccCC-CeEEEEecChHHHHHHHHHHhcC------CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH
Q 016162          161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (394)
Q Consensus       161 ~~l~g-ktvGIIGlG~IG~~vA~~la~~~------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (394)
                      ..|+| +||||||+|+||+++|+.| +..      |++|++.++......+.        ....|.... .....+++|+
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nL-r~s~~~~g~G~~ViVg~r~~sks~e~--------A~e~G~~v~-d~ta~s~aEA  118 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKIGLRKGSKSFDE--------ARAAGFTEE-SGTLGDIWET  118 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHH--------HHHTTCCTT-TTCEEEHHHH
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHH-HhcccccCCCCEEEEEeCCchhhHHH--------HHHCCCEEe-cCCCCCHHHH
Confidence            57999 9999999999999999998 555      99988665543221111        111222110 0012478999


Q ss_pred             hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCcceEEeeccCCCC
Q 016162          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ-NPMFRVGLDVFEDEP  303 (394)
Q Consensus       234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~l~gaalDV~~~EP  303 (394)
                      +++||+|++++|.... ..++. +.+..||+|++ |-.+.|-.      +..+++ +...+..+||+-.-|
T Consensus       119 a~~ADVVILaVP~~~~-~eVl~-eI~p~LK~GaI-Ls~AaGf~------I~~le~~~i~~p~dv~VVrVmP  180 (525)
T 3fr7_A          119 VSGSDLVLLLISDAAQ-ADNYE-KIFSHMKPNSI-LGLSHGFL------LGHLQSAGLDFPKNISVIAVCP  180 (525)
T ss_dssp             HHHCSEEEECSCHHHH-HHHHH-HHHHHSCTTCE-EEESSSHH------HHHHHHTTCCCCTTSEEEEEEE
T ss_pred             HhcCCEEEECCChHHH-HHHHH-HHHHhcCCCCe-EEEeCCCC------HHHHhhhcccCCCCCcEEEEec
Confidence            9999999999996544 34665 68899999998 56677743      334443 222233456665555

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.76  E-value=2.5e-07  Score=91.45  Aligned_cols=241  Identities=17%  Similarity=0.205  Sum_probs=135.2

Q ss_pred             eeEEEeCCCCc--eEEEEeCCCCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHH-----------HhcCCCcEEEec
Q 016162            5 VSIEVWNPNGK--YRVVSTKPMPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIA-----------LIGDKCDGVIGQ   69 (394)
Q Consensus         5 ~~~~~~~~~~~--~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~el~~-----------~~~~~~d~ii~~   69 (394)
                      |+|-|+++.+.  .||    .+.| +..+.|.+.|++|.+.....  ...+.++..+           .+  ++|.|+..
T Consensus         1 m~igv~~e~~~~E~Rv----~~~P-~~v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~--~ad~i~~v   73 (361)
T 1pjc_A            1 MEIGVPKEIKNQEFRV----GLSP-SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW--SREMVVKV   73 (361)
T ss_dssp             CEEEECCCCSTTCCCC----SCCH-HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH--TSSEEECS
T ss_pred             CEEEEEccCCCCCCee----CcCH-HHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHh--cCCeEEEE
Confidence            45556655543  233    3344 35678878898887644332  2344444432           11  37876643


Q ss_pred             CCccccHHHHHHhcccCCcEEEEcccCccccchhHHhhCCceEec---CCCCC-----chhhHHHHH--HHHHHHHhchH
Q 016162           70 LTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN---TPGVL-----TETTAELAA--SLSLAAARRIV  139 (394)
Q Consensus        70 ~~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~~~gI~v~n---~p~~~-----~~~vAE~~l--~~~L~~~R~~~  139 (394)
                       ..+...+. . +-+.|...+......++.-.++.+.+.|+...|   .|.-.     -.++++.+-  +.++++.. +.
T Consensus        74 -ksP~~~~~-~-~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~n-t~  149 (361)
T 1pjc_A           74 -KEPLPAEY-D-LMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARF-LE  149 (361)
T ss_dssp             -SCCCGGGG-G-GCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHH-TS
T ss_pred             -CCCCHHHH-H-hhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHH-Hh
Confidence             33332222 1 112232345444445554456677788888775   34321     133444333  44444322 21


Q ss_pred             HHHHHHHcCccCCCC-CCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC
Q 016162          140 EADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG  218 (394)
Q Consensus       140 ~~~~~~~~g~~~~w~-~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~  218 (394)
                      ..    ..|+  +.. ..  . ..+.+++++|+|.|.+|+.+++.+ +.+|++|+++|++..+. +...+.++.      
T Consensus       150 ~~----~~g~--G~~l~~--l-~~l~~~~VlViGaGgvG~~aa~~a-~~~Ga~V~v~dr~~~r~-~~~~~~~~~------  212 (361)
T 1pjc_A          150 RQ----QGGR--GVLLGG--V-PGVKPGKVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERL-SYLETLFGS------  212 (361)
T ss_dssp             GG----GTSC--CCCTTC--B-TTBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHHGG------
T ss_pred             hc----cCCC--ceeccC--C-CCCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhhCc------
Confidence            10    1121  111 11  1 247889999999999999999996 79999999999987542 211111110      


Q ss_pred             CCCccccccCCHHHHhcccCEEEEcCCCCh-hhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          219 EQPVTWKRASSMDEVLREADVISLHPVLDK-TTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       219 ~~~~~~~~~~~l~ell~~aDiV~l~lPlt~-~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ..........++.+.+..+|+|+.+++... .+..++.++.++.|++|++++|++-
T Consensus       213 ~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          213 RVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             GSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             eeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            000000011246677889999999987432 2345668889999999999999974

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.24  E-value=8.3e-10  Score=100.56  Aligned_cols=94  Identities=19%  Similarity=0.208  Sum_probs=71.7

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +.+++|||||+|+||+.+|+.| ...|++|++|||+.. . +.+        ...+     ... .+++++++++|+|++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~-~-~~~--------~~~g-----~~~-~~~~~~~~~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKM-LQCGYSVVFGSRNPQ-V-SSL--------LPRG-----AEV-LCYSEAASRSDVIVL   79 (201)
Confidence            6788999999999999999998 688999999998764 1 111        1111     112 367788999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v  277 (394)
                      ++|.. .+..++   .+..+++++++||+++|-..
T Consensus        80 av~~~-~~~~v~---~l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           80 AVHRE-HYDFLA---ELADSLKGRVLIDVSNNQKM  110 (201)
Confidence            99964 566665   24557789999999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.73  E-value=3e-07  Score=88.18  Aligned_cols=155  Identities=15%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCCc-------------cccccCCH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPV-------------TWKRASSM  230 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------~~~~~~~l  230 (394)
                      ++|+|||.|.||..+|..++ ..|.+|++||++.......  ......+.+...|....             ......++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~   94 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   94 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence            68999999999999999984 6699999999987643211  00000000111121100             11224688


Q ss_pred             HHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccc
Q 016162          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS  310 (394)
Q Consensus       231 ~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~  310 (394)
                      ++.++.||+|++++|.+.+...-+-++....++++++++..+.|-  ....+.+.+... -...+.+.+.  |.     .
T Consensus        95 ~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~-~~~~g~h~~~--P~-----~  164 (302)
T 1f0y_A           95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQ-DRFAGLHFFN--PV-----P  164 (302)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCG-GGEEEEEECS--ST-----T
T ss_pred             HHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCc-ccEEEEecCC--Cc-----c
Confidence            888999999999999765544333345556688999998655443  344555544321 2345555553  32     1


Q ss_pred             cCCceEEcCCCCCCcHHHHHHH
Q 016162          311 EMKNAIVVPHIASASKWTREGM  332 (394)
Q Consensus       311 ~~~nvilTPHia~~t~~~~~~~  332 (394)
                      ..+.+.+.++- ..+.+..+.+
T Consensus       165 ~~~~~~i~~g~-~~~~e~~~~~  185 (302)
T 1f0y_A          165 VMKLVEVIKTP-MTSQKTFESL  185 (302)
T ss_dssp             TCCEEEEECCT-TCCHHHHHHH
T ss_pred             cCceEEEeCCC-CCCHHHHHHH
Confidence            23455666643 2345544443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.73  E-value=1.9e-08  Score=94.64  Aligned_cols=102  Identities=13%  Similarity=0.183  Sum_probs=74.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +++.+++|||||+|.||+.+|+.+ ...|.+ |.+||++.... +...+.+       +     .....+++++++++|+
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l-~~~g~~~v~~~~~~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~~Dv   71 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKAL-YRKGFRIVQVYSRTEESA-RELAQKV-------E-----AEYTTDLAEVNPYAKL   71 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSHHHH-HHHHHHT-------T-----CEEESCGGGSCSCCSE
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCE
Confidence            456678999999999999999998 466888 89999987543 2211111       1     1224578888899999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  278 (394)
                      |++|+|.. ....++ ++....+++++++|++++|...+
T Consensus        72 vi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           72 YIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             EEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             EEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchH
Confidence            99999944 334454 44556788999999999987754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.73  E-value=4.9e-08  Score=83.41  Aligned_cols=93  Identities=13%  Similarity=0.250  Sum_probs=69.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      |++++|||.|.||+.+++.| ...|++|+++||+.... +.+.+.+       +   .......++++.+.++|+|+.++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l-~~~g~~v~v~~r~~~~~-~~~a~~~-------~---~~~~~~~~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF-SYPQYKVTVAGRNIDHV-RAFAEKY-------E---YEYVLINDIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC-CTTTCEEEEEESCHHHH-HHHHHHH-------T---CEEEECSCHHHHHHTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHHh-------C---CceEeecCHHHHhcCCCEEEEeC
Confidence            88999999999999999997 67899999999987653 2222222       1   11223468899999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      |..   ..++..   ..+++|.+++|++...
T Consensus        89 ~~~---~~~~~~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           89 SSK---TPIVEE---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             CCS---SCSBCG---GGCCTTCEEEECCSSC
T ss_pred             CCC---CcEeeH---HHcCCCCEEEEccCCc
Confidence            954   344544   4568899999998753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.62  E-value=1.5e-07  Score=95.25  Aligned_cols=124  Identities=16%  Similarity=0.237  Sum_probs=82.7

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCH
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l  230 (394)
                      ++++..-++|+|||+|.||..+|..|+ . |.+|++||+++.... ...+..        .+.+.. +  ..+.....++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La-~-G~~V~~~D~~~~~v~-~l~~g~~~i~e~~l~~ll~~-~--~~~l~~ttd~  103 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIA-Q-NHEVVALDIVQAKVD-MLNQKISPIVDKEIQEYLAE-K--PLNFRATTDK  103 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHHH-HHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHH-c-CCeEEEEecCHHHhh-HHhccCCccccccHHHHHhh-c--cCCeEEEcCH
Confidence            556777789999999999999999985 5 999999999876422 111100        000000 0  0112234688


Q ss_pred             HHHhcccCEEEEcCCCChh-------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          231 DEVLREADVISLHPVLDKT-------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       231 ~ell~~aDiV~l~lPlt~~-------t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ++.++.||+|++|+|...+       +..+..  +...+ +++|+++|+.|+-.+-..+.+.+.+.+.
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~  170 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID  170 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence            9999999999999995421       112221  34556 8999999999998888888898888764

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.60  E-value=1.4e-06  Score=83.04  Aligned_cols=171  Identities=19%  Similarity=0.210  Sum_probs=109.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.++|++..+  ..+++. ++++..-.  |=+    -|+--+.+
T Consensus        58 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDV----DG~~~~N~  130 (286)
T 4a5o_A           58 KDCEEVGFLSQAYDLPA-ETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPD--KDV----DGFHPYNI  130 (286)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGG--GCT----TCCSHHHH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhhh
Confidence            34456788877666554 357888887652     25789999865  445553 44443221  211    01111111


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      -...      .+.++ ....++.-++-++    +                     ..+.+++||++.|||.|. +|+.+|
T Consensus       131 g~l~------~g~~~-~~PcTp~gv~~lL----~---------------------~~~i~l~Gk~vvVvGrs~iVG~plA  178 (286)
T 4a5o_A          131 GRLA------QRMPL-LRPCTPKGIMTLL----A---------------------STGADLYGMDAVVVGASNIVGRPMA  178 (286)
T ss_dssp             HHHH------TTCCS-SCCHHHHHHHHHH----H---------------------HTTCCCTTCEEEEECTTSTTHHHHH
T ss_pred             HHHh------cCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCchhHHHHH
Confidence            1111      11233 3444555544322    2                     123579999999999987 799999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| .+.|++|++.+++                            ..++++.+++||+|+.+++.    .++|..+.+  
T Consensus       179 ~lL-~~~gAtVtv~hs~----------------------------T~~L~~~~~~ADIVI~Avg~----p~~I~~~~v--  223 (286)
T 4a5o_A          179 LEL-LLGGCTVTVTHRF----------------------------TRDLADHVSRADLVVVAAGK----PGLVKGEWI--  223 (286)
T ss_dssp             HHH-HHTTCEEEEECTT----------------------------CSCHHHHHHTCSEEEECCCC----TTCBCGGGS--
T ss_pred             HHH-HHCCCeEEEEeCC----------------------------CcCHHHHhccCCEEEECCCC----CCCCCHHHc--
Confidence            997 6899999987642                            13788999999999999983    456777655  


Q ss_pred             CCCCcEEEEcCCCcc
Q 016162          262 MKKEAILVNCSRGPV  276 (394)
Q Consensus       262 mk~gailIN~aRG~~  276 (394)
                       |+|+++||++.-.+
T Consensus       224 -k~GavVIDvgi~~~  237 (286)
T 4a5o_A          224 -KEGAIVIDVGINRQ  237 (286)
T ss_dssp             -CTTCEEEECCSCSS
T ss_pred             -CCCeEEEEeccccc
Confidence             99999999987654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.60  E-value=1.2e-07  Score=88.49  Aligned_cols=105  Identities=24%  Similarity=0.345  Sum_probs=73.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc----EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++|||||+|+||+.+++.| ...|.    +|++|||++... +...+.+       +     .....+++++++++|+|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l-~~~g~~~~~~V~~~~r~~~~~-~~~~~~~-------g-----~~~~~~~~e~~~~aDvVi   68 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGM-INKNIVSSNQIICSDLNTANL-KNASEKY-------G-----LTTTTDNNEVAKNADILI   68 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTSSCGGGEEEECSCHHHH-HHHHHHH-------C-----CEECSCHHHHHHHCSEEE
T ss_pred             CeEEEECccHHHHHHHHHH-HhCCCCCCCeEEEEeCCHHHH-HHHHHHh-------C-----CEEeCChHHHHHhCCEEE
Confidence            5899999999999999998 56787    999999987643 2221111       2     123468899999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      +|+|. .....++ ++....++++.++|.+.-|-  ..+.|.+.+..
T Consensus        69 lav~~-~~~~~v~-~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           69 LSIKP-DLYASII-NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ECSCT-TTHHHHC----CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             EEeCH-HHHHHHH-HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            99973 3444454 44556688999999776553  35566666643

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.59  E-value=4.9e-07  Score=92.79  Aligned_cols=153  Identities=20%  Similarity=0.264  Sum_probs=94.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh---hcCCCCc--------cccccCCHHHH
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQPV--------TWKRASSMDEV  233 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~l~el  233 (394)
                      -++|||||.|.||..+|..++ ..|.+|++||++.+..... .+.+...+.   ..|....        ......+++ .
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~l~~~-~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~   81 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAA-SHGHQVLLYDISAEALTRA-IDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-A   81 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHH-HHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-G
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCeEEEEECCHHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-H
Confidence            358999999999999999984 6799999999998653221 111101111   1121110        011234664 5


Q ss_pred             hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccC
Q 016162          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM  312 (394)
Q Consensus       234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gail-IN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~  312 (394)
                      +++||+|+.++|.+.+.+.-+-++..+.++++++| .|+|.-   ....|.+.+.. .-...++..|..-|.       +
T Consensus        82 ~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti---~i~~ia~~~~~-p~~~ig~hf~~Pa~v-------~  150 (483)
T 3mog_A           82 LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI---SITAIAAEIKN-PERVAGLHFFNPAPV-------M  150 (483)
T ss_dssp             GGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS---CHHHHTTTSSS-GGGEEEEEECSSTTT-------C
T ss_pred             hcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC---CHHHHHHHccC-ccceEEeeecChhhh-------C
Confidence            89999999999977666544445667778999999 566653   34556655543 345677777763332       2


Q ss_pred             CceEEcCCCCCCcHHHHHHH
Q 016162          313 KNAIVVPHIASASKWTREGM  332 (394)
Q Consensus       313 ~nvilTPHia~~t~~~~~~~  332 (394)
                      +-+.+.|+- .++.++.+.+
T Consensus       151 ~Lvevv~g~-~Ts~e~~~~~  169 (483)
T 3mog_A          151 KLVEVVSGL-ATAAEVVEQL  169 (483)
T ss_dssp             CEEEEEECS-SCCHHHHHHH
T ss_pred             CeEEEecCC-CCCHHHHHHH
Confidence            446666653 2345554443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.59  E-value=1.3e-06  Score=83.17  Aligned_cols=171  Identities=17%  Similarity=0.235  Sum_probs=110.5

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccchh
Q 016162           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (394)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~~  103 (394)
                      ..++.|.+.+....++ ..+++|+.+.+.     ++.++|++..+  ..++++ ++++..-.  |=+    -|+-.+.+-
T Consensus        57 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----Dg~~~~N~g  129 (285)
T 3p2o_A           57 ACEECGIKSLVYHLNE-NITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDV----DGFHPINVG  129 (285)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GCT----TCCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcc--ccc----ccCCHhhhh
Confidence            3455688777666554 357888887662     25899999865  445543 44544222  211    011111111


Q ss_pred             HHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHHH
Q 016162          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (394)
Q Consensus       104 ~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~  182 (394)
                      ..      +.+.++.....++.-++-++    ++                     .+.+++||++.|||.|. +|+.+|.
T Consensus       130 ~l------~~g~~~g~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVvGrs~iVG~p~A~  178 (285)
T 3p2o_A          130 YL------NLGLESGFLPCTPLGVMKLL----KA---------------------YEIDLEGKDAVIIGASNIVGRPMAT  178 (285)
T ss_dssp             HH------HTTCCSSCCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             hh------hcCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchHHHHHHH
Confidence            11      11223323445555554222    11                     23579999999999998 6999999


Q ss_pred             HHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcC
Q 016162          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (394)
Q Consensus       183 ~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~m  262 (394)
                      .| .+.|++|++.+++.                            .++++.+++||+|+.+++.    .++|..+.+   
T Consensus       179 lL-~~~gAtVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~v---  222 (285)
T 3p2o_A          179 ML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDMV---  222 (285)
T ss_dssp             HH-HHTTCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSSC----TTCBCGGGS---
T ss_pred             HH-HHCCCeEEEEeCCc----------------------------hhHHHHhhcCCEEEECCCC----CCcCCHHHc---
Confidence            97 68999999887531                            4788999999999999983    456777654   


Q ss_pred             CCCcEEEEcCCCcc
Q 016162          263 KKEAILVNCSRGPV  276 (394)
Q Consensus       263 k~gailIN~aRG~~  276 (394)
                      |+|+++||++.-.+
T Consensus       223 k~GavVIDVgi~~~  236 (285)
T 3p2o_A          223 KEGVIVVDVGINRL  236 (285)
T ss_dssp             CTTEEEEECCCEEC
T ss_pred             CCCeEEEEeccCcc
Confidence            99999999987554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.58  E-value=1.8e-07  Score=90.62  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ..+++|||||+|.||+.+++.+++.+|. +|.+|||+.... +++.+.+       +.   ......+++++++++|+|+
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~-~~l~~~~-------~~---~~~~~~~~~e~v~~aDiVi  201 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENA-EKFADTV-------QG---EVRVCSSVQEAVAGADVII  201 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHH-HHHHHHS-------SS---CCEECSSHHHHHTTCSEEE
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHh-------hC---CeEEeCCHHHHHhcCCEEE
Confidence            3567999999999999999988555677 899999987653 2222211       11   1123468999999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV  298 (394)
                      +|+|.   +..++..   ..+++|.++++++....- ...|.+.+.+..  ...+|-
T Consensus       202 ~atp~---~~~v~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g--~~~vD~  249 (312)
T 2i99_A          202 TVTLA---TEPILFG---EWVKPGAHINAVGASRPD-WRELDDELMKEA--VLYVDS  249 (312)
T ss_dssp             ECCCC---SSCCBCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHS--EEEESC
T ss_pred             EEeCC---CCcccCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcC--EEEECC
Confidence            99994   3556654   568999999999876652 244444333321  355563

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.57  E-value=7.7e-08  Score=88.08  Aligned_cols=95  Identities=17%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+++|+|||+|.||+.+|+.+ ...|.+|+++||+.... +.        +...+   .  .. .+++++++++|+|++|
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l-~~~g~~V~~~~r~~~~~-~~--------~~~~g---~--~~-~~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRL-VGSGFKVVVGSRNPKRT-AR--------LFPSA---A--QV-TFQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSHHHH-HH--------HSBTT---S--EE-EEHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHcC---C--ce-ecHHHHHhCCCEEEEC
Confidence            457899999999999999998 57789999999987542 11        11111   1  11 2788899999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  278 (394)
                      +|. .....++.   +..+.+++++|++++|...+
T Consensus        91 v~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           91 VFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             SCG-GGSGGGGG---GHHHHTTCEEEECCCCCHHH
T ss_pred             CCh-HHHHHHHH---HHHhcCCCEEEEeCCCcccc
Confidence            994 34455553   33333799999999987643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.56  E-value=1.1e-07  Score=90.64  Aligned_cols=93  Identities=18%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||+ |.||+.+|+.| ...|.+|++|||+..... ..        ...|.   .   ..++.+.+++||+|++|+
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~~-~~--------~~~g~---~---~~~~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGRD-RL--------QGMGI---P---LTDGDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHHH-HH--------HHTTC---C---CCCSSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHHH-HH--------HhcCC---C---cCCHHHHhcCCCEEEEcC
Confidence            58999999 99999999998 578999999999875421 11        11121   1   135667889999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      |.. .+..++ ++....+++++++|+++.|..
T Consensus        76 ~~~-~~~~v~-~~l~~~l~~~~ivv~~s~~~~  105 (286)
T 3c24_A           76 PDN-IIEKVA-EDIVPRVRPGTIVLILDAAAP  105 (286)
T ss_dssp             CHH-HHHHHH-HHHGGGSCTTCEEEESCSHHH
T ss_pred             Cch-HHHHHH-HHHHHhCCCCCEEEECCCCch
Confidence            943 355555 455567899999999988763

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.55  E-value=4.3e-07  Score=84.87  Aligned_cols=102  Identities=16%  Similarity=0.215  Sum_probs=73.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||+.+++.| ...|.+|.+||+++... +...+.|       |.     ....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~mG~~~a~~l-~~~g~~v~~~~~~~~~~-~~~~~~~-------g~-----~~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------AL-----PYAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------TC-----CBCSSHHHHHHTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHHc-------CC-----EeeCCHHHHHhcCCEEEEEeC
Confidence            4899999999999999998 57789999999987542 2222222       21     124688999999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                       ....     .+.+..+++|.++|++..|-.  .+.+.+.+..+
T Consensus        70 -~~~~-----~~v~~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           70 -PQLF-----ETVLKPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             -GGGH-----HHHHTTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             -cHhH-----HHHHHHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence             3333     334455678999999976543  45566666543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.55  E-value=2.4e-06  Score=81.45  Aligned_cols=170  Identities=14%  Similarity=0.219  Sum_probs=109.5

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccchh
Q 016162           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (394)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~~  103 (394)
                      ..++.|.+.+....++ ..+++|+.+.+.     ++.++|++..+  ..++++ +++...--  |=+    -|+-.+.+-
T Consensus        58 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----DG~~~~N~G  130 (285)
T 3l07_A           58 ACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KDV----DGFHPTNVG  130 (285)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--GBT----TCCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhhee
Confidence            3455688777666554 357888877662     25889999865  445543 44444322  211    022112221


Q ss_pred             HHhhCCceEecC-CCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       104 ~a~~~gI~v~n~-p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      ...      .+. ++ ....++.-++-++    +                     ..+.+++||++.|||.|. +|+.+|
T Consensus       131 ~l~------~g~~~~-~~PcTp~gv~~lL----~---------------------~~~i~l~Gk~vvVIG~s~iVG~p~A  178 (285)
T 3l07_A          131 RLQ------LRDKKC-LESCTPKGIMTML----R---------------------EYGIKTEGAYAVVVGASNVVGKPVS  178 (285)
T ss_dssp             HHH------HTCTTC-CCCHHHHHHHHHH----H---------------------HTTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             ehh------cCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCchhHHHHH
Confidence            111      112 33 3445555554322    1                     123579999999999998 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      +.| .+.|++|++.+++                            ..++++.+++||+|+.+++.    .++|..+.+  
T Consensus       179 ~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~v--  223 (285)
T 3l07_A          179 QLL-LNAKATVTTCHRF----------------------------TTDLKSHTTKADILIVAVGK----PNFITADMV--  223 (285)
T ss_dssp             HHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCSEEEECCCC----TTCBCGGGS--
T ss_pred             HHH-HHCCCeEEEEeCC----------------------------chhHHHhcccCCEEEECCCC----CCCCCHHHc--
Confidence            997 7899999988653                            14788999999999999982    446777654  


Q ss_pred             CCCCcEEEEcCCCcc
Q 016162          262 MKKEAILVNCSRGPV  276 (394)
Q Consensus       262 mk~gailIN~aRG~~  276 (394)
                       |+|+++||++.-.+
T Consensus       224 -k~GavVIDvgi~~~  237 (285)
T 3l07_A          224 -KEGAVVIDVGINHV  237 (285)
T ss_dssp             -CTTCEEEECCCEEE
T ss_pred             -CCCcEEEEecccCc
Confidence             99999999987553

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.55  E-value=2e-06  Score=82.56  Aligned_cols=168  Identities=14%  Similarity=0.231  Sum_probs=109.4

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--cc--ccHH-HHHHhcccCCcEEEEcccCccccc-
Q 016162           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--ED--WGET-LFAALSRAGGKAFSNMAVGYNNVD-  101 (394)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~--i~~~-~l~~l~~l~~k~I~~~g~G~d~id-  101 (394)
                      .++.|++.+....++ ..+++|+.+.+.     ++.|+|+++.+  ..  +++. ++++..-.  |       -+|.+- 
T Consensus        60 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~--K-------DVDG~hp  129 (301)
T 1a4i_A           60 AEEIGIKATHIKLPR-TTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE--K-------DVDGLTS  129 (301)
T ss_dssp             HHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGG--G-------BTTCCSH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCC--C-------CccCCCh
Confidence            455688877666554 357888877663     25799999864  33  5554 34443221  2       233332 


Q ss_pred             --hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHH
Q 016162          102 --VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGS  178 (394)
Q Consensus       102 --~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~  178 (394)
                        +-... .|-   ..+ .....+++-++-++    ++                     .+.+++|+++.|||.|+ +|+
T Consensus       130 ~N~G~l~-~g~---~~~-~~~PcTp~gi~~ll----~~---------------------~~i~l~gk~vvVIG~s~iVG~  179 (301)
T 1a4i_A          130 INAGRLA-RGD---LND-CFIPCTPKGCLELI----KE---------------------TGVPIAGRHAVVVGRSKIVGA  179 (301)
T ss_dssp             HHHHHHH-TTC---CSS-CCCCHHHHHHHHHH----HT---------------------TTCCCTTCEEEEECCCTTTHH
T ss_pred             hhHHHHh-cCC---CCC-CccCchHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCchHHH
Confidence              21111 110   012 23445555543222    21                     23579999999999996 699


Q ss_pred             HHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162          179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (394)
Q Consensus       179 ~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~  258 (394)
                      .+|+.| .+.|++|++.+++                            ..++.+.+++||+|+.+++.    .++|..+.
T Consensus       180 p~A~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  226 (301)
T 1a4i_A          180 PMHDLL-LWNNATVTTCHSK----------------------------TAHLDEEVNKGDILVVATGQ----PEMVKGEW  226 (301)
T ss_dssp             HHHHHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             HHHHHH-HhCCCeEEEEECC----------------------------cccHHHHhccCCEEEECCCC----cccCCHHH
Confidence            999997 6899999988643                            14788999999999999984    34677766


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 016162          259 LATMKKEAILVNCSRGPV  276 (394)
Q Consensus       259 l~~mk~gailIN~aRG~~  276 (394)
                      +   |+|+++||++.-.+
T Consensus       227 v---k~GavVIDVgi~~~  241 (301)
T 1a4i_A          227 I---KPGAIVIDCGINYV  241 (301)
T ss_dssp             S---CTTCEEEECCCBC-
T ss_pred             c---CCCcEEEEccCCCc
Confidence            4   79999999998654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.55  E-value=1.2e-07  Score=86.41  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=61.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .++.+++|+|||+|.||+.+|+.| ...|.+|++|||+..                                .+++||+|
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l-~~~g~~V~~~~~~~~--------------------------------~~~~aD~v   61 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNF-EIAGHEVTYYGSKDQ--------------------------------ATTLGEIV   61 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHH-HHTTCEEEEECTTCC--------------------------------CSSCCSEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHH--------------------------------HhccCCEE
Confidence            468889999999999999999998 578999999987531                                45789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      ++|+| +..+..++. +....++ ++++|++++|-.
T Consensus        62 i~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           62 IMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             EEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            99999 566666653 3444567 999999999765

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.55  E-value=1.9e-06  Score=81.83  Aligned_cols=166  Identities=17%  Similarity=0.202  Sum_probs=110.5

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCcccc---c
Q 016162           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNV---D  101 (394)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~i---d  101 (394)
                      .++.|++.+....++ ..+++|+.+.+.     ++.|+|+++.+  ..+++. ++++..-.  |       -+|.+   .
T Consensus        57 ~~~~Gi~~~~~~lp~-~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~--K-------DVDG~~p~n  126 (281)
T 2c2x_A           57 CAKVGITSIRRDLPA-DISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPA--K-------DADGLHPTN  126 (281)
T ss_dssp             HHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--G-------BTTSCCHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--C-------CccCCChhh
Confidence            455688877666554 357888887762     25899999864  445543 34443222  3       23333   2


Q ss_pred             hhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH-HHHH
Q 016162          102 VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAY  180 (394)
Q Consensus       102 ~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~v  180 (394)
                      +-...      .+.+ .....+++-++-++    ++                     .+.+++||++.|||.|.| |+.+
T Consensus       127 ~g~l~------~g~~-~~~PcTp~gi~~ll----~~---------------------~~i~l~gk~vvVvG~s~iVG~p~  174 (281)
T 2c2x_A          127 LGRLV------LGTP-APLPCTPRGIVHLL----RR---------------------YDISIAGAHVVVIGRGVTVGRPL  174 (281)
T ss_dssp             HHHHH------HTCC-CCCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHH
T ss_pred             HHHHh------CCCC-CCCCChHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCcHHHHHH
Confidence            22221      1223 34555666544332    11                     235799999999999985 9999


Q ss_pred             HHHHHhcC--CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHH
Q 016162          181 ARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (394)
Q Consensus       181 A~~la~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~  258 (394)
                      |+.| .+.  |++|+..+++.                            .++.+.+++||+|+.+++.    .++|..+.
T Consensus       175 A~lL-~~~g~~atVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  221 (281)
T 2c2x_A          175 GLLL-TRRSENATVTLCHTGT----------------------------RDLPALTRQADIVVAAVGV----AHLLTADM  221 (281)
T ss_dssp             HHHH-TSTTTCCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSCC----TTCBCGGG
T ss_pred             HHHH-hcCCCCCEEEEEECch----------------------------hHHHHHHhhCCEEEECCCC----CcccCHHH
Confidence            9997 677  89999886532                            4788999999999999982    33677776


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 016162          259 LATMKKEAILVNCSRGPV  276 (394)
Q Consensus       259 l~~mk~gailIN~aRG~~  276 (394)
                      +   |+|+++||+|.-.+
T Consensus       222 v---k~GavVIDVgi~r~  236 (281)
T 2c2x_A          222 V---RPGAAVIDVGVSRT  236 (281)
T ss_dssp             S---CTTCEEEECCEEEE
T ss_pred             c---CCCcEEEEccCCCC
Confidence            5   89999999997654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.54  E-value=4.1e-07  Score=88.33  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=75.7

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchh-hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      ...++|||||+|+||..+|+.| ...|    .+|++|||+.. ...+.. ..       .|     .....+..+.++.|
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L-~~~G~~~~~~V~v~~r~~~~~~~~~l-~~-------~G-----~~~~~~~~e~~~~a   85 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGF-TAAGVLAAHKIMASSPDMDLATVSAL-RK-------MG-----VKLTPHNKETVQHS   85 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHH-HHTTSSCGGGEEEECSCTTSHHHHHH-HH-------HT-----CEEESCHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHH-HHCCCCCcceEEEECCCccHHHHHHH-HH-------cC-----CEEeCChHHHhccC
Confidence            3446899999999999999998 4567    78999999874 122221 11       12     12235788999999


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      |+|++|+| ......++ .+....++++.++|+++.|-.  .+.|.+.+.+
T Consensus        86 DvVilav~-~~~~~~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           86 DVLFLAVK-PHIIPFIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             SEEEECSC-GGGHHHHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             CEEEEEeC-HHHHHHHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            99999999 44555555 345566889999999987643  4556666664

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.54  E-value=5.3e-07  Score=91.21  Aligned_cols=119  Identities=10%  Similarity=0.087  Sum_probs=78.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      ++|+|||+|.||..+|..| ...|.+|++||++..... ...+..        .+.+......+ ......++++.++.|
T Consensus         1 mkI~VIG~G~vG~~~A~~l-a~~G~~V~~~d~~~~~~~-~l~~~~~~i~e~~l~~~~~~~~~~g-~l~~t~~~~~~~~~a   77 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCL-SARGHEVIGVDVSSTKID-LINQGKSPIVEPGLEALLQQGRQTG-RLSGTTDFKKAVLDS   77 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH-HHHTTCCSSCCTTHHHHHHHHHHTT-CEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCHHHHH-HHhCCCCCcCCCCHHHHHHhhcccC-ceEEeCCHHHHhccC
Confidence            3799999999999999998 467999999999875422 111100        00000000000 122346888889999


Q ss_pred             CEEEEcCCCChh---------hhhcccHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHc
Q 016162          238 DVISLHPVLDKT---------TYHLINKERLATMKK---EAILVNCSRGPVID-EVALVEHLKQ  288 (394)
Q Consensus       238 DiV~l~lPlt~~---------t~~li~~~~l~~mk~---gailIN~aRG~~vd-e~aL~~aL~~  288 (394)
                      |+|++|+|....         ....+ ++....+++   +.++|+.|+..+-. ++.+.+.+.+
T Consensus        78 DvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           78 DVSFICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999999995443         33333 344456788   99999998766655 5667777765

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.53  E-value=1.7e-06  Score=83.08  Aligned_cols=173  Identities=21%  Similarity=0.230  Sum_probs=109.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.++|++..+  ..++++ ++++..-.  |=+    -|+--+++
T Consensus        60 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDV----DG~~~~N~  132 (300)
T 4a26_A           60 KAAAEVGMASFNVELPE-DISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPH--KDA----DALLPVNV  132 (300)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGG--GCT----TCCSHHHH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcc--ccc----ccCCcceE
Confidence            33456788877766554 357888887662     25889999865  345544 34443221  211    01111111


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (394)
                      -.....+    ..++ ....++.-++-++    ++                     .+.+++||++.|||.|. +|+.+|
T Consensus       133 G~l~~g~----~~~~-~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~A  182 (300)
T 4a26_A          133 GLLHYKG----REPP-FTPCTAKGVIVLL----KR---------------------CGIEMAGKRAVVLGRSNIVGAPVA  182 (300)
T ss_dssp             HHHHCTT----CCCS-CCCHHHHHHHHHH----HH---------------------HTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             EEeecCC----CcCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCchHHHHHH
Confidence            1111110    0133 3445555544322    21                     23579999999999998 699999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH--HHhcccCEEEEcCCCChhhhhcccHHHH
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADVISLHPVLDKTTYHLINKERL  259 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~~aDiV~l~lPlt~~t~~li~~~~l  259 (394)
                      +.| .+.|++|++++++.                            .+++  +.+++||+|+.++|.    .++|.++. 
T Consensus       183 ~lL-~~~gAtVtv~~~~T----------------------------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~~-  228 (300)
T 4a26_A          183 ALL-MKENATVTIVHSGT----------------------------STEDMIDYLRTADIVIAAMGQ----PGYVKGEW-  228 (300)
T ss_dssp             HHH-HHTTCEEEEECTTS----------------------------CHHHHHHHHHTCSEEEECSCC----TTCBCGGG-
T ss_pred             HHH-HHCCCeEEEEeCCC----------------------------CCchhhhhhccCCEEEECCCC----CCCCcHHh-
Confidence            997 68899999987632                            2455  889999999999983    34677765 


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 016162          260 ATMKKEAILVNCSRGPV  276 (394)
Q Consensus       260 ~~mk~gailIN~aRG~~  276 (394)
                        +|+|+++||++.-.+
T Consensus       229 --vk~GavVIDvgi~~~  243 (300)
T 4a26_A          229 --IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             --SCTTCEEEECCCEEE
T ss_pred             --cCCCcEEEEEeccCC
Confidence              499999999987544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.52  E-value=5.4e-07  Score=91.69  Aligned_cols=119  Identities=15%  Similarity=0.168  Sum_probs=79.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCC--------CccccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~a  237 (394)
                      ++|+|||+|.||..+|..| ...|.+|++||++.... +...+.... ....+..        ........++++.++.|
T Consensus         3 mkI~VIG~G~vG~~lA~~L-a~~G~~V~~~D~~~~~v-~~l~~g~~~-i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCF-AELGANVRCIDTDRNKI-EQLNSGTIP-IYEPGLEKMIARNVKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHTCSC-CCSTTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECcCHHHHHHHHHH-HhcCCEEEEEECCHHHH-HHHHcCCCc-ccCCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence            5899999999999999998 46799999999987642 211110000 0000000        00122346899999999


Q ss_pred             CEEEEcCCCCh---------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          238 DVISLHPVLDK---------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       238 DiV~l~lPlt~---------~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      |+|++|+|...         .....+ +...+.+++|.++|+.|.-.+-..+.+.+.+++
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99999999543         233333 456677899999999997665556667766655

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.46  E-value=7.1e-07  Score=90.67  Aligned_cols=112  Identities=15%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC----------------ccccccCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP----------------VTWKRASS  229 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~  229 (394)
                      -+++|||+|.+|..+|..|+ ..|.+|++||++......         +.. +..+                -......+
T Consensus         9 ~~~~vIGlG~vG~~~A~~La-~~G~~V~~~D~~~~kv~~---------l~~-g~~~~~epgl~~~~~~~~~~g~l~~ttd   77 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFS-DFGHEVVCVDKDARKIEL---------LHQ-NVMPIYEPGLDALVASNVKAGRLSFTTD   77 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCSTTHHH---------HTT-TCCSSCCTTHHHHHHHHHHTTCEEEESC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHH---------Hhc-CCCCccCCCHHHHHHhhcccCCEEEECC
Confidence            47999999999999999984 679999999998765321         111 1100                01223468


Q ss_pred             HHHHhcccCEEEEcCCCChh----------hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          230 MDEVLREADVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       230 l~ell~~aDiV~l~lPlt~~----------t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      +.+.++.||+|++|+|....          .+..+ +...+.+++|.++|+.|+-.+-..+.+.+.+.+.
T Consensus        78 ~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           78 LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            99999999999999884321          22222 4566789999999999976666667777777653

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.45  E-value=3.1e-07  Score=87.52  Aligned_cols=106  Identities=11%  Similarity=0.093  Sum_probs=75.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc---EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .++|||||+|+||+.+++.+ ...|.   +|++|||+.... +...+.|       |     .....+..+++++||+|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l-~~~g~~~~~V~v~dr~~~~~-~~l~~~~-------g-----i~~~~~~~~~~~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGL-IANGYDPNRICVTNRSLDKL-DFFKEKC-------G-----VHTTQDNRQGALNADVVV   68 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHH-HHTTCCGGGEEEECSSSHHH-HHHHHTT-------C-----CEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEEcccHHHHHHHHHH-HHCCCCCCeEEEEeCCHHHH-HHHHHHc-------C-----CEEeCChHHHHhcCCeEE
Confidence            46899999999999999998 46677   899999987653 2222211       2     223468889999999999


Q ss_pred             EcCCCChhhhhcccHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          242 LHPVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~-mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      +++|. .....++ ++.-.. ++++.++|+++-|-.  .+.|.+.+..
T Consensus        69 lav~p-~~~~~vl-~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~  112 (280)
T 3tri_A           69 LAVKP-HQIKMVC-EELKDILSETKILVISLAVGVT--TPLIEKWLGK  112 (280)
T ss_dssp             ECSCG-GGHHHHH-HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTC
T ss_pred             EEeCH-HHHHHHH-HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCC
Confidence            99983 3344444 333344 688889998876643  5677777764

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.40  E-value=4.7e-07  Score=84.68  Aligned_cols=102  Identities=17%  Similarity=0.193  Sum_probs=68.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||+|.||+.+|+.| ...| .+|++|||++... +...+.|       |.     ....++++++ .+|+|++|+
T Consensus         1 m~i~iiG~G~mG~~~a~~l-~~~g~~~v~~~~r~~~~~-~~~~~~~-------g~-----~~~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGL-VKQGGYRIYIANRGAEKR-ERLEKEL-------GV-----ETSATLPELH-SDDVLILAV   65 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHCSCEEEEECSSHHHH-HHHHHHT-------CC-----EEESSCCCCC-TTSEEEECS
T ss_pred             CEEEEECchHHHHHHHHHH-HHCCCCeEEEECCCHHHH-HHHHHhc-------CC-----EEeCCHHHHh-cCCEEEEEe
Confidence            3799999999999999998 4668 8999999987543 2211111       21     1234566777 999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      | ......++..  +.. + +.++|+++.|--  .+.|.+.+..+
T Consensus        66 ~-~~~~~~v~~~--l~~-~-~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           66 K-PQDMEAACKN--IRT-N-GALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             C-HHHHHHHHTT--CCC-T-TCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             C-chhHHHHHHH--hcc-C-CCEEEEecCCCC--HHHHHHHcCCC
Confidence            9 4444444321  222 4 899999966543  36677776653

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.37  E-value=1.4e-06  Score=84.81  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=75.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCC-Cccc-cccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||+|.||..+|..| ...|.+|++||++.... +...+.++-.+...+.. .... ....+++++++.+|+|++|
T Consensus         5 mki~iiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            5899999999999999998 57799999999987542 22111110000000000 0000 1235888989999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      +|... +..++ ++....+++++++|++ .|.......+.+.+.+
T Consensus        83 v~~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCchH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            99543 44444 4556778999999998 4422244445555554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.37  E-value=3e-06  Score=90.96  Aligned_cols=155  Identities=17%  Similarity=0.140  Sum_probs=92.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCCc--------cccccCCHHHHh
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPV--------TWKRASSMDEVL  234 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell  234 (394)
                      =++|||||+|.||..+|..++ ..|.+|++||++.+.....  ......+.+...|....        ......++ +.+
T Consensus       314 i~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  391 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF  391 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred             CCEEEEECCChhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence            357999999999999999984 6699999999987643211  00100000111221110        01123456 568


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCc
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~n  314 (394)
                      ++||+|+.++|.+.+.+.-+-.+..+.++++++++..+.+  +....+.+.+.. .-...+++.|.  |..     .++.
T Consensus       392 ~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~--P~~-----~~~l  461 (715)
T 1wdk_A          392 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN--PVH-----MMPL  461 (715)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS--STT-----TCCE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC--Ccc-----cCce
Confidence            9999999999977765544445666788999999754433  333455555432 22456777665  322     2345


Q ss_pred             eEEcCCCCCCcHHHHHHH
Q 016162          315 AIVVPHIASASKWTREGM  332 (394)
Q Consensus       315 vilTPHia~~t~~~~~~~  332 (394)
                      +.+.|+- .++.++.+.+
T Consensus       462 vevv~g~-~t~~e~~~~~  478 (715)
T 1wdk_A          462 VEVIRGE-KSSDLAVATT  478 (715)
T ss_dssp             EEEEECS-SCCHHHHHHH
T ss_pred             EEEEECC-CCCHHHHHHH
Confidence            6566642 2345555443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.36  E-value=2.4e-06  Score=84.22  Aligned_cols=110  Identities=13%  Similarity=0.125  Sum_probs=73.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh-hcCC-CCccccccCCHHHHhcccCEEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .++|+|||.|.+|..+|..| ...|.+|.+|+|++... +...+. +.... ..+. .+.......++++.++.||+|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~L-a~~G~~V~l~~r~~~~~-~~i~~~-~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVL-ARKGQKVRLWSYESDHV-DEMQAE-GVNNRYLPNYPFPETLKAYCDLKASLEGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HTTTCCEEEECSCHHHH-HHHHHH-SSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHc-CCCcccCCCCccCCCeEEECCHHHHHhcCCEEEE
Confidence            46899999999999999998 57789999999986542 211110 00000 0000 01112234689999999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde  279 (394)
                      ++|. ...+.++ ++....+++++++|+++.|-..++
T Consensus       106 aVp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          106 VVPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             CCCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             CCCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCc
Confidence            9993 3444444 455567899999999988766553

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.33  E-value=2.5e-06  Score=77.04  Aligned_cols=124  Identities=12%  Similarity=0.144  Sum_probs=80.9

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+||| .|.||+.+++.| ...|.+|+++||+.... +...+.++.... .+  .  .. ..++++.++++|+|++++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~-~~--~--~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKA-EAKAAEYRRIAG-DA--S--IT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHH-HHHHHHHHHHHS-SC--C--EE-EEEHHHHHHHCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHhccccc-cC--C--CC-hhhHHHHHhcCCEEEEeC
Confidence            3799999 999999999998 57799999999986542 221111110000 00  0  11 257888899999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHcCCcceEEeeccCCCCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID------------EVALVEHLKQNPMFRVGLDVFEDEPY  304 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd------------e~aL~~aL~~g~l~gaalDV~~~EP~  304 (394)
                      | ...+..++. +....++ +.++|++++|--.+            .+.|.+.+..    ...++.+.+.|.
T Consensus        73 ~-~~~~~~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           73 P-WEHAIDTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             C-HHHHHHHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             C-hhhHHHHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            9 334444442 2333454 89999999876543            5667776652    235677766653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.32  E-value=2.8e-06  Score=87.06  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=78.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhc-CCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCHHHHhcc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      ++|+|||+|.||..+|..|++. .|.+|++||++...... ..+..        .+.+... . ........++.+.++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~-l~~g~~~i~e~gl~~~~~~~-~-~~~l~~t~~~~~~~~~   86 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAE-WNSDKLPIYEPGLDEIVFAA-R-GRNLFFSSDIPKAIAE   86 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHH-HTSSSCSSCCTTHHHHHHHH-B-TTTEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHH-HHCCCCCcCCCCHHHHHHHh-h-cCCEEEECCHHHHhhc
Confidence            5899999999999999998654 38999999998764221 11000        0000000 0 0012223577888999


Q ss_pred             cCEEEEcCCCChh--------------hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          237 ADVISLHPVLDKT--------------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       237 aDiV~l~lPlt~~--------------t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      ||+|++|+|....              ....+ +...+.+++|.++|+.|+-.+-..+.+.+.+.+
T Consensus        87 aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           87 ADLIFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999999984321              12222 445677999999999987666566778887776

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.32  E-value=2.7e-06  Score=85.16  Aligned_cols=111  Identities=15%  Similarity=0.225  Sum_probs=76.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCC-------------CccccccCCHHH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-------------PVTWKRASSMDE  232 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~e  232 (394)
                      ++|+|||+|.||..+|..|+ . |.+|++||++.... +..        ...+..             ........++.+
T Consensus         1 MkI~VIG~G~vG~~~A~~La-~-G~~V~~~d~~~~~~-~~l--------~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~   69 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILPSKV-DKI--------NNGLSPIQDEYIEYYLKSKQLSIKATLDSKA   69 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T-TSEEEEECSCHHHH-HHH--------HTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHh-C-CCEEEEEECCHHHH-HHH--------HcCCCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence            37999999999999999984 5 89999999987542 211        111110             001122357888


Q ss_pred             HhcccCEEEEcCCCCh----------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          233 VLREADVISLHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       233 ll~~aDiV~l~lPlt~----------~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      .++.||+|++|+|...          .....+ +.... +++++++|+.+.-++-..+.+.+.+.+.
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             HhcCCCEEEEecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            8999999999999653          233333 34455 8899999998887776677777766543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.32  E-value=7.1e-06  Score=83.67  Aligned_cols=153  Identities=17%  Similarity=0.157  Sum_probs=88.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHh----hhhh-----hhhcCCCCccccccCCHHHHhc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQF-----LKANGEQPVTWKRASSMDEVLR  235 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~l~ell~  235 (394)
                      -++|+|||.|.||..+|..+ ...|.+|++||++...... ..+.    +...     +..............++ +.++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~l-a~~G~~V~l~D~~~~~~~~-~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~  113 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISF-ARVGISVVAVESDPKQLDA-AKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELS  113 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSHHHHHH-HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGT
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCeEEEEECCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHC
Confidence            46899999999999999998 4779999999998754221 1110    0000     00000000001113466 4688


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCce
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nv  315 (394)
                      +||+|+.++|.+.+...-+-++..+.++++++|++.+.+  +....|.+.+.. .-...+++.|.  |..     .++.+
T Consensus       114 ~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~--~~~~~la~~~~~-~~~~ig~hf~~--P~~-----~~~lv  183 (463)
T 1zcj_A          114 TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFS--PAH-----VMRLL  183 (463)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEECS--STT-----TCCEE
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--cCHHHHHHHhcC-CcceEEeecCC--Ccc-----cceeE
Confidence            999999999966544433334556678999999874333  334466665542 23456777663  321     23445


Q ss_pred             EEcCCCCCCcHHHHHH
Q 016162          316 IVVPHIASASKWTREG  331 (394)
Q Consensus       316 ilTPHia~~t~~~~~~  331 (394)
                      .+.|+-+ ++.++.+.
T Consensus       184 evv~g~~-t~~e~~~~  198 (463)
T 1zcj_A          184 EVIPSRY-SSPTTIAT  198 (463)
T ss_dssp             EEEECSS-CCHHHHHH
T ss_pred             EEeCCCC-CCHHHHHH
Confidence            5666533 34454443

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.31  E-value=1.5e-06  Score=82.95  Aligned_cols=169  Identities=16%  Similarity=0.159  Sum_probs=108.5

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHHH-HHHhcccCCcEEEEcccCccccchhH
Q 016162           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDVNA  104 (394)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~~-l~~l~~l~~k~I~~~g~G~d~id~~~  104 (394)
                      .++.|++.+....++ ..+++|+.+.+.     ++.|+|+++.+  ..+++.. +++..-.  |       -+|.+--..
T Consensus        58 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDG~~p~n  127 (288)
T 1b0a_A           58 CEEVGFVSRSYDLPE-TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPD--K-------DVDGFHPYN  127 (288)
T ss_dssp             HHHHTCEECCEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTT--T-------CTTCCSHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCc--c-------CcccCCccc
Confidence            445677766555443 357888877662     25799999864  4454443 3333211  2       233332111


Q ss_pred             HhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHHHH
Q 016162          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (394)
Q Consensus       105 a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (394)
                         .|-.+.+.+ .....+++-++-++    ++                     .+.+++|+++.|||.|. +|+.+|+.
T Consensus       128 ---~g~l~~g~~-~~~PcTp~gi~~ll----~~---------------------~~i~l~gk~vvVIG~s~iVG~p~A~l  178 (288)
T 1b0a_A          128 ---VGRLCQRAP-RLRPCTPRGIVTLL----ER---------------------YNIDTFGLNAVVIGASNIVGRPMSME  178 (288)
T ss_dssp             ---HHHHHTTCC-SSCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             ---hhHHhCCCC-CCCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCChHHHHHHHHH
Confidence               111111223 34555666544322    11                     23579999999999997 59999999


Q ss_pred             HHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCC
Q 016162          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (394)
Q Consensus       184 la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk  263 (394)
                      | .+.|++|+..+++.                            .++.+.+++||+|+.+++.    .++|..+.+   |
T Consensus       179 L-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~lI~~~~v---k  222 (288)
T 1b0a_A          179 L-LLAGCTTTVTHRFT----------------------------KNLRHHVENADLLIVAVGK----PGFIPGDWI---K  222 (288)
T ss_dssp             H-HTTTCEEEEECSSC----------------------------SCHHHHHHHCSEEEECSCC----TTCBCTTTS---C
T ss_pred             H-HHCCCeEEEEeCCc----------------------------hhHHHHhccCCEEEECCCC----cCcCCHHHc---C
Confidence            7 78999999886532                            4788999999999999982    336777664   8


Q ss_pred             CCcEEEEcCCCcc
Q 016162          264 KEAILVNCSRGPV  276 (394)
Q Consensus       264 ~gailIN~aRG~~  276 (394)
                      +|+++||+|.-.+
T Consensus       223 ~GavVIDVgi~r~  235 (288)
T 1b0a_A          223 EGAIVIDVGINRL  235 (288)
T ss_dssp             TTCEEEECCCEEC
T ss_pred             CCcEEEEccCCcc
Confidence            9999999998654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.30  E-value=2.3e-06  Score=82.61  Aligned_cols=110  Identities=17%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcC--chhhHHHHHHHhhhhhhhhcCCC---C---ccccccC--CHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQ---P---VTWKRAS--SMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~--~l~ell~  235 (394)
                      ++|+|||+|.||+.+|..| ...|.+|++||+  +.... +..        ...+..   +   .......  ++++.++
T Consensus         1 m~I~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~~~-~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   70 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPL-VDNGNEVRIWGTEFDTEIL-KSI--------SAGREHPRLGVKLNGVEIFWPEQLEKCLE   70 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHH-HHHCCEEEEECCGGGHHHH-HHH--------HTTCCBTTTTBCCCSEEEECGGGHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEEccCCHHHH-HHH--------HHhCcCcccCccccceEEecHHhHHHHHh
Confidence            3799999999999999998 466889999999  65432 211        111110   0   0011223  6778889


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc---c-cCHHHHHHHHHc
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP---V-IDEVALVEHLKQ  288 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~---~-vde~aL~~aL~~  288 (394)
                      .+|+|++|+|.. .+..++ ..... +++++++|+++.|-   - -..+.+.+.+.+
T Consensus        71 ~~D~vi~~v~~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           71 NAEVVLLGVSTD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             cCCEEEEcCChH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            999999999943 445544 34445 88899999998774   1 122445566654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.30  E-value=1.9e-06  Score=80.37  Aligned_cols=99  Identities=21%  Similarity=0.307  Sum_probs=67.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .++|||||+|.||+.+|+.|+ ..|    .+|++|||+...        +       |     .....+++++++.+|+|
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~-~~g~~~~~~v~~~~~~~~~--------~-------g-----~~~~~~~~~~~~~~D~v   62 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIA-NANIIKKENLFYYGPSKKN--------T-------T-----LNYMSSNEELARHCDII   62 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHH-HHTSSCGGGEEEECSSCCS--------S-------S-----SEECSCHHHHHHHCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCCCCCeEEEEeCCccc--------C-------c-----eEEeCCHHHHHhcCCEE
Confidence            458999999999999999984 556    689999997642        0       1     12245788999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ++|+| ......++ .+....++ +.++|....|  ++.+.+.+.+..+
T Consensus        63 i~~v~-~~~~~~v~-~~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           63 VCAVK-PDIAGSVL-NNIKPYLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             EECSC-TTTHHHHH-HHSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             EEEeC-HHHHHHHH-HHHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            99999 34555554 23445564 4455554443  3345666666543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.28  E-value=5.9e-06  Score=88.77  Aligned_cols=154  Identities=19%  Similarity=0.130  Sum_probs=90.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCC--------ccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (394)
                      ++|||||.|.||..+|..+ ...|.+|++||++.+.....  ......+.+...|...        .......++ +.++
T Consensus       313 ~kV~VIGaG~MG~~iA~~l-a~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  390 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATAL-ILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFR  390 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGT
T ss_pred             cEEEEEcCCHhhHHHHHHH-HhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHC
Confidence            6799999999999999998 46799999999987643211  0000000011111100        011223456 5689


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCce
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nv  315 (394)
                      +||+|+.++|.+.+.+.-+-.+..+.++++++++..+.+  +....+.+.+.. .-...+++.|.  |..     .++.+
T Consensus       391 ~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~--P~~-----~~~lv  460 (725)
T 2wtb_A          391 DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFS--PAH-----IMPLL  460 (725)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECS--STT-----TCCEE
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCC--Ccc-----cCceE
Confidence            999999999977665444445566778999999654433  333455554432 22456777665  322     23456


Q ss_pred             EEcCCCCCCcHHHHHHH
Q 016162          316 IVVPHIASASKWTREGM  332 (394)
Q Consensus       316 ilTPHia~~t~~~~~~~  332 (394)
                      .+.|+- .++.++.+.+
T Consensus       461 evv~g~-~t~~e~~~~~  476 (725)
T 2wtb_A          461 EIVRTN-HTSAQVIVDL  476 (725)
T ss_dssp             EEEECS-SCCHHHHHHH
T ss_pred             EEEECC-CCCHHHHHHH
Confidence            666542 2345554443

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.27  E-value=1.1e-06  Score=85.23  Aligned_cols=98  Identities=16%  Similarity=0.184  Sum_probs=70.2

Q ss_pred             cccccCCCeEEEEecChH-HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc------c--CC
Q 016162          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR------A--SS  229 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~I-G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~  229 (394)
                      .|.+++|+++.|||.|.| |+.+|+.| .+.|++|+++||+.....+.           ..........      .  .+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~r-----------a~~la~~~~~~t~~~~t~~~~  238 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR-----------GESLKLNKHHVEDLGEYSEDL  238 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES-----------CCCSSCCCCEEEEEEECCHHH
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHhH-----------HHHHhhhcccccccccccHhH
Confidence            456899999999999986 99999997 68999999999874321110           0001100111      1  46


Q ss_pred             HHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       230 l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      +++.+++||+|+.+++. +  ..+|..+.+   |+|+++||+|..
T Consensus       239 L~e~l~~ADIVIsAtg~-p--~~vI~~e~v---k~GavVIDVgi~  277 (320)
T 1edz_A          239 LKKCSLDSDVVITGVPS-E--NYKFPTEYI---KEGAVCINFACT  277 (320)
T ss_dssp             HHHHHHHCSEEEECCCC-T--TCCBCTTTS---CTTEEEEECSSS
T ss_pred             HHHHhccCCEEEECCCC-C--cceeCHHHc---CCCeEEEEcCCC
Confidence            88999999999999973 1  223776664   899999999864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.27  E-value=1.4e-06  Score=83.12  Aligned_cols=108  Identities=14%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      +++|+++.|+|.|.+|+.++..| ...|+ +|++++|+.++..+         +.    .........++++.+.++|+|
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a~~---------la----~~~~~~~~~~~~~~~~~aDiV  179 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANEL-YKIVRPTLTVANRTMSRFNN---------WS----LNINKINLSHAESHLDEFDII  179 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHH-HTTCCSCCEEECSCGGGGTT---------CC----SCCEEECHHHHHHTGGGCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHH---------HH----HhcccccHhhHHHHhcCCCEE
Confidence            57899999999999999999998 68898 89999998764211         00    011111234566778899999


Q ss_pred             EEcCCCC--hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          241 SLHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       241 ~l~lPlt--~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      +.++|..  +.....++   .+.++++.+++|+..... .+. |+++.++
T Consensus       180 InaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~-~T~-ll~~A~~  224 (277)
T 3don_A          180 INTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPY-KTP-ILIEAEQ  224 (277)
T ss_dssp             EECCC-------CCSSC---CTTCCSSCEEEESCCSSS-SCH-HHHHHHH
T ss_pred             EECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCC-CCH-HHHHHHH
Confidence            9999964  22211232   355789999999987643 344 5544443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.26  E-value=2.3e-06  Score=81.16  Aligned_cols=165  Identities=10%  Similarity=0.142  Sum_probs=106.2

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHHHH-HHhcccCCcEEEEcccCccccchhH
Q 016162           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDVNA  104 (394)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~~l-~~l~~l~~k~I~~~g~G~d~id~~~  104 (394)
                      .++.|. .+....++ ..+++|+.+.+.     ++.|+|+++.+  ..+++..+ ++..-.  |       -+|.+--..
T Consensus        52 ~~~~Gi-~~~~~lp~-~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~--K-------DVDG~~p~n  120 (276)
T 3ngx_A           52 GKKIGI-AVDLEKYD-DISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYY--K-------DVDALSPYN  120 (276)
T ss_dssp             HHHHTC-EEEEEEES-SCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGG--G-------BTTCCSHHH
T ss_pred             HHHCCe-EEEEECCC-CCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCC--C-------cccCCCccc
Confidence            445688 66555544 357888887772     25899999875  45555443 332111  2       223221100


Q ss_pred             HhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-HHHHHHHH
Q 016162          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (394)
Q Consensus       105 a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (394)
                         .|-.+.+.++ ....++.-++-++    +                     ..+  ++|+++.|||.|. +|+.+|+.
T Consensus       121 ---~G~l~~g~~~-~~PcTp~gv~~lL----~---------------------~~~--l~Gk~vvVvG~s~iVG~plA~l  169 (276)
T 3ngx_A          121 ---QGLIALNREF-LVPATPRAVIDIM----D---------------------YYG--YHENTVTIVNRSPVVGRPLSMM  169 (276)
T ss_dssp             ---HHHHHTTCCS-SCCHHHHHHHHHH----H---------------------HHT--CCSCEEEEECCCTTTHHHHHHH
T ss_pred             ---hhhhhcCCCC-CCCCcHHHHHHHH----H---------------------HhC--cCCCEEEEEcCChHHHHHHHHH
Confidence               1111112333 3445555554322    1                     012  8999999999996 79999999


Q ss_pred             HHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCC
Q 016162          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (394)
Q Consensus       184 la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk  263 (394)
                      | .+.|++|++++++                            ..++++.+++||+|+.+++.    .+++.++.+   |
T Consensus       170 L-~~~gAtVtv~~~~----------------------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~v---k  213 (276)
T 3ngx_A          170 L-LNRNYTVSVCHSK----------------------------TKDIGSMTRSSKIVVVAVGR----PGFLNREMV---T  213 (276)
T ss_dssp             H-HHTTCEEEEECTT----------------------------CSCHHHHHHHSSEEEECSSC----TTCBCGGGC---C
T ss_pred             H-HHCCCeEEEEeCC----------------------------cccHHHhhccCCEEEECCCC----CccccHhhc---c
Confidence            7 6899999988753                            14788999999999999983    346777654   9


Q ss_pred             CCcEEEEcCCCc
Q 016162          264 KEAILVNCSRGP  275 (394)
Q Consensus       264 ~gailIN~aRG~  275 (394)
                      +|+++||++.-.
T Consensus       214 ~GavVIDvgi~~  225 (276)
T 3ngx_A          214 PGSVVIDVGINY  225 (276)
T ss_dssp             TTCEEEECCCEE
T ss_pred             CCcEEEEeccCc
Confidence            999999998654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.25  E-value=5.8e-06  Score=84.66  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=75.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCC--------CccccccCCHHHHhcc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLRE  236 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~  236 (394)
                      ..+|+|||+|.||..+|..|+ ..|.+|++||++.... +...+... .....+..        ........++++.++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la-~~G~~V~~~d~~~~~v-~~l~~~~~-~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~   84 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLA-DIGHDVFCLDVDQAKI-DILNNGGV-PIHEPGLKEVIARNRSAGRLRFSTDIEAAVAH   84 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCC-SSCCTTHHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHCCCC-CcCCCCHHHHHHHhcccCCEEEECCHHHHhhc
Confidence            358999999999999999984 7799999999987542 22111000 00000000        0012234578888999


Q ss_pred             cCEEEEcCCCC---------hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          237 ADVISLHPVLD---------KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       237 aDiV~l~lPlt---------~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      ||+|++|+|..         ......+ +.....+++++++|+.+.-.+-..+.+.+.+.+
T Consensus        85 aDvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           85 GDVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             CSEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999999842         2333333 445567899999999985434344555555543

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.24  E-value=2.9e-06  Score=82.83  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCC-------cEEEEEcCchh-----hHHHHHHHhhhhhhhh-cCC-CCccccccCCH
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKA-NGE-QPVTWKRASSM  230 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l  230 (394)
                      .++|+|||.|.||..+|..|+ ..|       .+|++||++..     .. +...+ .+..... .+. .........++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~-~~g~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVG-GNAAQLAQFDPRVTMWVFEEDIGGKKLT-EIINT-QHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHH-HHHHHCTTEEEEEEEECCCCBSSSSBHH-HHHHH-HSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECCCHHHHHHHHHHH-hcCCcccCCCCeEEEEEcChhhhhhHHH-HHHHh-cCcccccCCcccCccCeEEEcCH
Confidence            358999999999999999984 446       89999999865     21 11111 0000000 000 01112233578


Q ss_pred             HHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       231 ~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      ++.++.||+|++|+|. ..+..++ ++....+++++++|+++.|-.
T Consensus        85 ~~~~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           85 VQAAEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            8889999999999994 4445544 344566789999999988754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.24  E-value=4.3e-06  Score=78.62  Aligned_cols=106  Identities=16%  Similarity=0.170  Sum_probs=74.5

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++| +++|||.|.+|+.++..| ...|+ +|++++|+.++. ++.        ..    ........++.+.++++|+|+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L-~~~G~~~I~v~nR~~~ka-~~l--------a~----~~~~~~~~~~~~~~~~aDiVI  171 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYAL-LQMGVKDIWVVNRTIERA-KAL--------DF----PVKIFSLDQLDEVVKKAKSLF  171 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHH-HHTTCCCEEEEESCHHHH-HTC--------CS----SCEEEEGGGHHHHHHTCSEEE
T ss_pred             CCC-eEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHH--------HH----HcccCCHHHHHhhhcCCCEEE
Confidence            578 999999999999999997 57898 899999987642 110        00    111123457888899999999


Q ss_pred             EcCCCChhh-hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          242 LHPVLDKTT-YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       242 l~lPlt~~t-~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      .++|..-.. ...++.+.   ++++.+++|+.-+   .+.-|.+|.+.|
T Consensus       172 natp~gm~p~~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          172 NTTSVGMKGEELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             ECSSTTTTSCCCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             ECCCCCCCCCCCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            999853111 12344444   4689999999988   555555666655

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.23  E-value=1.2e-06  Score=86.09  Aligned_cols=107  Identities=14%  Similarity=0.168  Sum_probs=69.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh-cCC-CCccccccCCHHHHhcccCEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +|+|||+|.||..+|..| ...|.+|++||++.... +...+.. ..... .+. .........++++.++.+|+|++|+
T Consensus        17 kI~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~~-~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEEV-RLVNEKR-ENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTEEEEEEECSCHHHH-HHHHHHT-BCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHcC-cccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            899999999999999998 56788999999986542 2111110 00000 000 0011223357889899999999999


Q ss_pred             CCChhhhhcccHH---HHhcCCC-CcEEEEcCCCccc
Q 016162          245 VLDKTTYHLINKE---RLATMKK-EAILVNCSRGPVI  277 (394)
Q Consensus       245 Plt~~t~~li~~~---~l~~mk~-gailIN~aRG~~v  277 (394)
                      |. .....++...   ....+++ ++++|+++.|-..
T Consensus        94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            93 4555555321   4455677 8999999877443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.20  E-value=3e-06  Score=86.79  Aligned_cols=112  Identities=14%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcC-Cc-EEEEEcCchh----hHHHHHHHh------hhh----hhh---hcCCCCccccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGF-KM-NLIYYDLYQA----TRLEKFVTA------YGQ----FLK---ANGEQPVTWKR  226 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~-G~-~V~~~d~~~~----~~~~~~~~~------~~~----~~~---~~~~~~~~~~~  226 (394)
                      ++|+|||+|.+|..+|..|+ .. |. +|++||++..    .. +...+.      |-.    .+.   ..+.    ...
T Consensus        19 mkIaVIGlG~mG~~lA~~la-~~~G~~~V~~~D~~~~~~~~kv-~~l~~g~~~i~~~e~gl~~l~~~~~~~g~----l~~   92 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSKSSGYKI-EMLNRGESPLKGEEPGLEELIGKVVKAGK----FEC   92 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HSTTCCEEEEECCCCTTTTTHH-HHHTTTCCCSSCCGGGHHHHHHHHHHTTC----EEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-HhCCCCeEEEEECChhHhHHHH-HHHHhcCCCccccCCCHHHHHHhhcccCC----eEE
Confidence            58999999999999999985 66 89 9999999876    32 111110      000    000   0111    112


Q ss_pred             cCCHHHHhcccCEEEEcCCCCh--------hhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 016162          227 ASSMDEVLREADVISLHPVLDK--------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVE  284 (394)
Q Consensus       227 ~~~l~ell~~aDiV~l~lPlt~--------~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~  284 (394)
                      ..+ .+.++.||+|++|+|...        +...+..  +...+.+++|.++|+.|+-.+--.+.+.+
T Consensus        93 ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           93 TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            234 678999999999999542        2223332  45667899999999999877766677765

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.20  E-value=4.6e-06  Score=84.26  Aligned_cols=111  Identities=19%  Similarity=0.230  Sum_probs=74.8

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH---------
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---------  233 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---------  233 (394)
                      -+|+++.|||+|.+|..+|..|+ ..|.+|++||+++++.. ..        .. +..+.   ....++|+         
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La-~~G~~V~~~D~~~~kv~-~L--------~~-g~~pi---~epgl~~ll~~~~~~g~   74 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFA-KHGVDVLGVDINQQTID-KL--------QN-GQISI---EEPGLQEVYEEVLSSGK   74 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHHH-HH--------HT-TCCSS---CCTTHHHHHHHHHHTTC
T ss_pred             ccCCccEEEeeCHHHHHHHHHHH-HCCCEEEEEECCHHHHH-HH--------HC-CCCCc---CCCCHHHHHHhhcccCc
Confidence            47899999999999999999984 67999999999986532 11        11 11111   01122322         


Q ss_pred             ------hcccCEEEEcCCCChhh--------hhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          234 ------LREADVISLHPVLDKTT--------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       234 ------l~~aDiV~l~lPlt~~t--------~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  287 (394)
                            ++.||+|++|+|.....        ..+..  +...+.+++|.++|+.|+-.+--.+.+.+.+.
T Consensus        75 l~~ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~  144 (431)
T 3ojo_A           75 LKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI  144 (431)
T ss_dssp             EEEESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred             eEEeCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence                  35799999999954321        12332  45667899999999999887777777777543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.19  E-value=2.1e-05  Score=76.45  Aligned_cols=150  Identities=13%  Similarity=0.102  Sum_probs=95.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCCc---------cccccCCHHH
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPV---------TWKRASSMDE  232 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~l~e  232 (394)
                      .-++|+|||.|.||+.+|..+ ...|++|+.||+.+.....  +..+.....+...+....         ......++++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~-a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLF-ASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            346899999999999999997 4779999999998764221  111111111222222110         1123468999


Q ss_pred             HhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccC
Q 016162          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM  312 (394)
Q Consensus       233 ll~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~  312 (394)
                      .++.||+|+=++|-+-+.+.-+-++.=+.++++++|-.-+++  +....|.+++.. .-+..++-.|.+-|+  -||.+ 
T Consensus        84 a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP~~~--m~LVE-  157 (319)
T 3ado_A           84 AVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNPPYY--IPLVE-  157 (319)
T ss_dssp             HTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSSTTT--CCEEE-
T ss_pred             HhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCCccc--cchHH-
Confidence            999999999999987777665556666778999998554443  445667766653 345667666643222  34444 


Q ss_pred             CceEEcCCCC
Q 016162          313 KNAIVVPHIA  322 (394)
Q Consensus       313 ~nvilTPHia  322 (394)
                        |+-+|+.+
T Consensus       158 --iv~g~~Ts  165 (319)
T 3ado_A          158 --LVPHPETS  165 (319)
T ss_dssp             --EEECTTCC
T ss_pred             --hcCCCCCc
Confidence              66666543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.17  E-value=2.2e-06  Score=73.18  Aligned_cols=104  Identities=12%  Similarity=0.124  Sum_probs=73.7

Q ss_pred             ccCCCeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      -++-++|+|||.    |++|..+++.| ...|.+|+.+||.....                 .  +...+.|++|+....
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~~vnp~~~~i-----------------~--G~~~~~s~~el~~~v   70 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-----------------E--GLKCYRSVRELPKDV   70 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-----------------T--TEECBSSGGGSCTTC
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEEEeCCCCCeE-----------------C--CeeecCCHHHhCCCC
Confidence            356679999999    99999999998 67899998888864220                 1  122356888988899


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      |++++++| .+....++. +..+ ...++++++.+.    ..+++.+++++..+.
T Consensus        71 Dlvii~vp-~~~v~~v~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           71 DVIVFVVP-PKVGLQVAK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             CEEEECSC-HHHHHHHHH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             CEEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            99999999 466666663 3444 566777777743    257777777765444

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.16  E-value=1e-05  Score=77.78  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=75.0

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++.|++++|||.|.+|+.++..| ...|+ +|++++|+.++. ++..+.+       +..........++.+.+.++|+|
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L-~~~G~~~V~v~nR~~~ka-~~la~~~-------~~~~~~~~~~~~~~~~~~~aDiv  208 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSL-LSTAAERIDMANRTVEKA-ERLVREG-------DERRSAYFSLAEAETRLAEYDII  208 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECSSHHHH-HHHHHHS-------CSSSCCEECHHHHHHTGGGCSEE
T ss_pred             CCCCCEEEEECcHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHh-------hhccCceeeHHHHHhhhccCCEE
Confidence            57899999999999999999998 68898 999999987542 2222211       11000111113566778999999


Q ss_pred             EEcCCCChhhh--h-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          241 SLHPVLDKTTY--H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       241 ~l~lPlt~~t~--~-li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      +.++|......  . .++   .+.++++.+++|++.. +..+. |+++.++.
T Consensus       209 In~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~  255 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYN-PLETK-WLKEAKAR  255 (297)
T ss_dssp             EECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCS-SSSCH-HHHHHHHT
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHC
Confidence            99999654211  0 122   2457889999999884 33443 65555543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.15  E-value=3.1e-06  Score=77.53  Aligned_cols=93  Identities=22%  Similarity=0.233  Sum_probs=61.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -++|+|||+|+||+.+|+.| ...|.+|++ +||+.+.. +...+.+       +.     ....+..+.++.+|+|+++
T Consensus        23 mmkI~IIG~G~mG~~la~~l-~~~g~~V~~v~~r~~~~~-~~l~~~~-------g~-----~~~~~~~~~~~~aDvVila   88 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERF-TAAQIPAIIANSRGPASL-SSVTDRF-------GA-----SVKAVELKDALQADVVILA   88 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHH-HHTTCCEEEECTTCGGGG-HHHHHHH-------TT-----TEEECCHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCCHHHH-HHHHHHh-------CC-----CcccChHHHHhcCCEEEEe
Confidence            36899999999999999998 567889998 99987643 2222222       11     1112444568999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +|. .....++.+  +.. .++.++|+++-|-
T Consensus        89 vp~-~~~~~v~~~--l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           89 VPY-DSIADIVTQ--VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             SCG-GGHHHHHTT--CSC-CTTCEEEECCCCB
T ss_pred             CCh-HHHHHHHHH--hhc-cCCCEEEEcCCCC
Confidence            993 233333321  222 3588999998654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.14  E-value=3.9e-06  Score=82.91  Aligned_cols=105  Identities=12%  Similarity=0.128  Sum_probs=67.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC-------cEEEEEcCchh-----hHHHHHHHhhhhhhhh-cCC-CCccccccCCHH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMD  231 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~  231 (394)
                      ++|+|||.|.||..+|..|+ ..|       .+|++||++..     .. +...+. ...... .+. ...+.....+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~-~~G~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~   98 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVG-TNAKNNYLFENEVRMWIRDEFVNGERMV-DIINNK-HENTKYLKGVPLPHNIVAHSDLA   98 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHH-HHHHHCTTBCSCEEEECCSCC---CCHH-HHHHHH-CBCTTTSTTCBCCTTEEEESSTH
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCccCCCCCeEEEEECChhhhhHHHH-HHHHhc-CcccccCCcccCcCCeEEECCHH
Confidence            47999999999999999985 445       88999999765     21 111110 000000 000 011122345788


Q ss_pred             HHhcccCEEEEcCCCChhhhhcccHHHHh----cCCCCcEEEEcCCCc
Q 016162          232 EVLREADVISLHPVLDKTTYHLINKERLA----TMKKEAILVNCSRGP  275 (394)
Q Consensus       232 ell~~aDiV~l~lPlt~~t~~li~~~~l~----~mk~gailIN~aRG~  275 (394)
                      +.++.+|+|++++| +.....++ ++...    .+++++++|+++.|-
T Consensus        99 ea~~~aDvVilav~-~~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A           99 SVINDADLLIFIVP-CQYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             HHHTTCSEEEECCC-HHHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             HHHcCCCEEEEcCC-HHHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            88999999999999 34555544 23444    688899999998873

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.14  E-value=5.3e-06  Score=76.71  Aligned_cols=96  Identities=24%  Similarity=0.260  Sum_probs=71.2

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~l  244 (394)
                      +|||||+|.||+.+++.+. .-|+++ .+||++...  +              .      .+.++++++ .++|+|++|+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~--~--------------~------~~~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEH--E--------------K------MVRGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCC--T--------------T------EESSHHHHTTSCCSEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcch--h--------------h------hcCCHHHHhcCCCCEEEECC
Confidence            7999999999999999974 678887 689987421  0              0      246899999 7999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde---~aL~~aL~~g~  290 (394)
                      |.... .    +-....++.|..+|+.+.+..-++   +.|.++.++..
T Consensus        59 ~~~~~-~----~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g  102 (236)
T 2dc1_A           59 SQQAV-K----DYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTG  102 (236)
T ss_dssp             CHHHH-H----HHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHC
T ss_pred             CHHHH-H----HHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcC
Confidence            93221 1    222455678999999998887666   66777776543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.13  E-value=4.6e-06  Score=81.09  Aligned_cols=106  Identities=17%  Similarity=0.300  Sum_probs=69.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC------ccccccCCHHHHhcccC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP------VTWKRASSMDEVLREAD  238 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~ell~~aD  238 (394)
                      ..+|+|||.|.||..+|..| ..-|.+|++|+|+.... +...        ..+...      .......++++ +..+|
T Consensus        14 ~~kI~iIG~G~mG~ala~~L-~~~G~~V~~~~r~~~~~-~~l~--------~~g~~~~~~~~~~~~~~~~~~~~-~~~aD   82 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQML-HENGEEVILWARRKEIV-DLIN--------VSHTSPYVEESKITVRATNDLEE-IKKED   82 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHH--------HHSCBTTBTTCCCCSEEESCGGG-CCTTE
T ss_pred             CCcEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHH--------HhCCcccCCCCeeeEEEeCCHHH-hcCCC
Confidence            45899999999999999998 46689999999986542 2111        111100      01223457778 89999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCC-CCcEEEEcCCCcccC-HHHHHHHHH
Q 016162          239 VISLHPVLDKTTYHLINKERLATMK-KEAILVNCSRGPVID-EVALVEHLK  287 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk-~gailIN~aRG~~vd-e~aL~~aL~  287 (394)
                      +|++++| +..+..++     ..++ ++.++|+++.|--.+ .+.+.+.+.
T Consensus        83 vVil~vk-~~~~~~v~-----~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~  127 (335)
T 1z82_A           83 ILVIAIP-VQYIREHL-----LRLPVKPSMVLNLSKGIEIKTGKRVSEIVE  127 (335)
T ss_dssp             EEEECSC-GGGHHHHH-----TTCSSCCSEEEECCCCCCTTTCCCHHHHHH
T ss_pred             EEEEECC-HHHHHHHH-----HHhCcCCCEEEEEeCCCCCCccCcHHHHHH
Confidence            9999999 35555444     2333 789999999763322 233444443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.12  E-value=2.9e-06  Score=79.95  Aligned_cols=97  Identities=10%  Similarity=0.069  Sum_probs=65.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cc-cccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TW-KRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~ell~~aDiV~l  242 (394)
                      ++|+|||+|.||+.+|..| ...|.+|++|||+.... +.        +...+..+.  .. ....+ .+.++.+|+|++
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~--------l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~   69 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPY-CS--------VNLVETDGSIFNESLTAND-PDFLATSDLLLV   69 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSE-EE--------EEEECTTSCEEEEEEEESC-HHHHHTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCCEEEEEcCccce-ee--------EEEEcCCCceeeeeeeecC-ccccCCCCEEEE
Confidence            3799999999999999998 56789999999986431 10        111111110  00 01234 466789999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      ++|.. .+..++ ++....+++++++|++..|-
T Consensus        70 ~v~~~-~~~~v~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           70 TLKAW-QVSDAV-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             CSCGG-GHHHHH-HHHHTTSCTTSCEEEECSSS
T ss_pred             EecHH-hHHHHH-HHHHhhCCCCCEEEEecCCC
Confidence            99954 455554 45556788999999987653

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.11  E-value=1.6e-05  Score=77.05  Aligned_cols=97  Identities=19%  Similarity=0.297  Sum_probs=67.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..++++|||.|.+|+.+++.++..++ -+|.+|||+ ..  +++.+.+..   ..|   ..+... ++++.+++||+|++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a--~~la~~l~~---~~g---~~~~~~-~~~eav~~aDIVi~  189 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-AS--PEILERIGR---RCG---VPARMA-APADIAAQADIVVT  189 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CC--HHHHHHHHH---HHT---SCEEEC-CHHHHHHHCSEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HH--HHHHHHHHH---hcC---CeEEEe-CHHHHHhhCCEEEE
Confidence            46799999999999999998754444 489999999 22  222221110   012   112234 89999999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      |+|..   ..++..   ..+++|+.+++++....
T Consensus       190 aT~s~---~pvl~~---~~l~~G~~V~~vGs~~p  217 (313)
T 3hdj_A          190 ATRST---TPLFAG---QALRAGAFVGAIGSSLP  217 (313)
T ss_dssp             CCCCS---SCSSCG---GGCCTTCEEEECCCSST
T ss_pred             ccCCC---CcccCH---HHcCCCcEEEECCCCCC
Confidence            99853   455653   35799999999987543

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.11  E-value=8.1e-06  Score=75.77  Aligned_cols=70  Identities=10%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      -.+|||||+|+||.++|+.| +..|.+|++||+.                                ++ +..||  ++++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L-~~~G~~V~~~~~~--------------------------------~~-~~~aD--ilav   49 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKL-DSVGHYVTVLHAP--------------------------------ED-IRDFE--LVVI   49 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHH-HHTTCEEEECSSG--------------------------------GG-GGGCS--EEEE
T ss_pred             CcEEEEEeeCHHHHHHHHHH-HHCCCEEEEecCH--------------------------------HH-hccCC--EEEE
Confidence            35899999999999999998 6779999999872                                01 46789  8888


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |.. ....++ .+....+++|+++++++
T Consensus        50 P~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           50 DAH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             CSS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             cHH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            864 555555 45666789999999985

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.09  E-value=1.5e-05  Score=78.33  Aligned_cols=100  Identities=17%  Similarity=0.226  Sum_probs=69.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..++++|||.|.+|+.+++.+....+ -+|.+|||+.+.. +++.+.+.    ..  .+.....+.++++++++||+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a-~~la~~~~----~~--~g~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANLK----EY--SGLTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHT----TC--TTCEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHHH----hc--cCceEEEeCCHHHHHhcCCEEEE
Confidence            46799999999999999987644444 5899999997653 33333221    10  01112335689999999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |+|.. ....++..   +.+++|..+++++..
T Consensus       201 aTps~-~~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          201 VTADK-AYATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             CCCCS-SEEEEECG---GGCCTTCEEEECSCC
T ss_pred             eccCC-CCCceecH---HHcCCCCEEEECCCC
Confidence            99965 23345543   457899999999853

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.08  E-value=3.7e-06  Score=74.31  Aligned_cols=100  Identities=11%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHH--h
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV--L  234 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el--l  234 (394)
                      .++.+++++|+|+|.+|+.+|+.| ... |.+|+++|+++.....         +...|.... .....+   +.++  +
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L-~~~~g~~V~vid~~~~~~~~---------~~~~g~~~~-~gd~~~~~~l~~~~~~  103 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDEL-RARYGKISLGIEIREEAAQQ---------HRSEGRNVI-SGDATDPDFWERILDT  103 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHH-HHHHCSCEEEEESCHHHHHH---------HHHTTCCEE-ECCTTCHHHHHTBCSC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHH-HhccCCeEEEEECCHHHHHH---------HHHCCCCEE-EcCCCCHHHHHhccCC
Confidence            457788999999999999999998 677 9999999998754321         112222111 111123   3343  6


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .++|+|++++|....+..++  ..+..+.+...+|..++
T Consensus       104 ~~ad~vi~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          104 GHVKLVLLAMPHHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             CCCCEEEECCSSHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             CCCCEEEEeCCChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence            78999999999644444332  34555666666665443

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.08  E-value=5.7e-06  Score=78.75  Aligned_cols=117  Identities=18%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-CCccccccCCHHHHhc---ccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLR---EADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~---~aDiV~  241 (394)
                      ++|+|||.|.||+.+|..| ...|.+|++||++.... +...+. +......+. ..... ...+.+++..   .+|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIML-HQGGNDVTLIDQWPAHI-EAIRKN-GLIADFNGEEVVANL-PIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHH-CEEEEETTEEEEECC-CEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhC-CEEEEeCCCeeEecc-eeecchhhcccCCCCCEEE
Confidence            4899999999999999998 56789999999987542 211110 000000000 00000 0113334444   899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      +|+|. ..+..++ ++....+++++++|+++.|- -..+.+.+.+.+.
T Consensus        80 ~~v~~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~  124 (316)
T 2ew2_A           80 ALTKA-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKE  124 (316)
T ss_dssp             ECSCH-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGG
T ss_pred             EEecc-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCc
Confidence            99993 4455544 34556788999999998753 2345565555443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.02  E-value=3.1e-06  Score=72.85  Aligned_cols=105  Identities=10%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      -++|+|||+    |++|..+++.| ...|++|+.+||.....  .             .  .+...+.+++|+....|++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L-~~~G~~v~~vnp~~~g~--~-------------i--~G~~~~~sl~el~~~~Dlv   74 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYL-LDQGYHVIPVSPKVAGK--T-------------L--LGQQGYATLADVPEKVDMV   74 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHH-HHHTCCEEEECSSSTTS--E-------------E--TTEECCSSTTTCSSCCSEE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHH-HHCCCEEEEeCCccccc--c-------------c--CCeeccCCHHHcCCCCCEE
Confidence            578999999    89999999998 67788899888865200  0             0  1122346788888899999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      ++++| .+....++. +..+ ...++++++.+.  .  ++++.+++++..+.-.
T Consensus        75 ii~vp-~~~v~~v~~-~~~~-~g~~~i~i~~~~--~--~~~l~~~a~~~Gi~~i  121 (145)
T 2duw_A           75 DVFRN-SEAAWGVAQ-EAIA-IGAKTLWLQLGV--I--NEQAAVLAREAGLSVV  121 (145)
T ss_dssp             ECCSC-STHHHHHHH-HHHH-HTCCEEECCTTC--C--CHHHHHHHHTTTCEEE
T ss_pred             EEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCCh--H--HHHHHHHHHHcCCEEE
Confidence            99999 466666663 3333 456777777532  2  6778888887655443

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.94  E-value=4e-05  Score=75.97  Aligned_cols=160  Identities=15%  Similarity=0.211  Sum_probs=101.8

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCc----hhhH---HHHHHHhhhhhhhhcCCCCccccccCCHH
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY----QATR---LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (394)
                      |..+.+.+|.|+|.|..|..+|+.+ .+.|. +|+.+|++    ....   +..+.+.|...   .+.    .....+|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll-~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~---~~~----~~~~~~L~  258 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI---TNP----ERLSGDLE  258 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT---SCT----TCCCSCHH
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHH-HhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHh---hhc----cCchhhHH
Confidence            3478999999999999999999997 68899 89999998    3221   22233333321   111    11246899


Q ss_pred             HHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCC-cceEEeeccCCCCCCCCcc
Q 016162          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGL  309 (394)
Q Consensus       232 ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~-l~gaalDV~~~EP~~~~~L  309 (394)
                      |.+..+|+++-+.-     .++|.++.++.|+++++++.+|+... +..++.+++   |+ +.+-+   -+..|      
T Consensus       259 eav~~ADVlIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~~~---g~~i~atG---r~~~p------  321 (388)
T 1vl6_A          259 TALEGADFFIGVSR-----GNILKPEWIKKMSRKPVIFALANPVPEIDPELAREA---GAFIVATG---RSDHP------  321 (388)
T ss_dssp             HHHTTCSEEEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHHT---TCSEEEES---CTTSS------
T ss_pred             HHHccCCEEEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHHHh---cCeEEEeC---CCCCC------
Confidence            99999999987742     38999999999999999999998553 333333333   54 22222   11222      


Q ss_pred             ccCCceEEcCCCCCCcHH----HHHHHHHHHHHHHHHHH
Q 016162          310 SEMKNAIVVPHIASASKW----TREGMATLAALNVLGKI  344 (394)
Q Consensus       310 ~~~~nvilTPHia~~t~~----~~~~~~~~~~~ni~~~l  344 (394)
                      -+-.|+++-|=++-....    --+.|...+++.+-.+.
T Consensus       322 ~Q~NN~~~FPgi~~Gal~~~a~i~~~m~~aAa~alA~~~  360 (388)
T 1vl6_A          322 NQVNNLLAFPGIMKGAVEKRSKITKNMLLSAVEAIARSC  360 (388)
T ss_dssp             SBCCGGGTHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTS
T ss_pred             CcCCceeEcchHhHHHHhcCCccCHHHHHHHHHHHHhhh
Confidence            234567776655321111    12455555555555544

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.92  E-value=3e-06  Score=80.21  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=55.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|||||+|+||+.+++.++ .. .+| .+||++..... ...+.+       +.      ...+++++++++|+|++|+
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~-~~v~~v~~~~~~~~~-~~~~~~-------g~------~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLK-DR-YEIGYILSRSIDRAR-NLAEVY-------GG------KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC------CCCEECSSHHHHH-HHHHHT-------CC------CCCSSCCCCC---CEEECS
T ss_pred             ceEEEEeCCHHHHHHHHHHH-Hc-CcEEEEEeCCHHHHH-HHHHHc-------CC------ccCCHHHHHhcCCEEEEeC
Confidence            47999999999999999874 44 788 58999875422 211111       21      2346677788999999999


Q ss_pred             CCChhhhhcccHHHHhcC-CCCcEEEEcCCCcc
Q 016162          245 VLDKTTYHLINKERLATM-KKEAILVNCSRGPV  276 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~m-k~gailIN~aRG~~  276 (394)
                      |... .     .+.+..+ +++.++||++-+-.
T Consensus        67 ~~~~-~-----~~v~~~l~~~~~ivi~~s~~~~   93 (276)
T 2i76_A           67 PDRY-I-----KTVANHLNLGDAVLVHCSGFLS   93 (276)
T ss_dssp             CTTT-H-----HHHHTTTCCSSCCEEECCSSSC
T ss_pred             ChHH-H-----HHHHHHhccCCCEEEECCCCCc
Confidence            9543 2     2333333 68899999986543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.92  E-value=6.6e-05  Score=64.45  Aligned_cols=104  Identities=17%  Similarity=0.207  Sum_probs=62.2

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh-hcCCCCccccccCCH---HHH-
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASSM---DEV-  233 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l---~el-  233 (394)
                      +.....++++.|+|+|.+|+.+++.| +..|.+|+++|+++... +.        +. ..+.... .....+.   .+. 
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L-~~~g~~V~vid~~~~~~-~~--------~~~~~g~~~~-~~d~~~~~~l~~~~   81 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLA-SSSGHSVVVVDKNEYAF-HR--------LNSEFSGFTV-VGDAAEFETLKECG   81 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGG-GG--------SCTTCCSEEE-ESCTTSHHHHHTTT
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HH--------HHhcCCCcEE-EecCCCHHHHHHcC
Confidence            34567889999999999999999997 68899999999987542 11        11 1121100 0111222   222 


Q ss_pred             hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +..+|+|++++|...... . -......+.+...+|-..++.
T Consensus        82 ~~~ad~Vi~~~~~~~~~~-~-~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           82 MEKADMVFAFTNDDSTNF-F-ISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGGCSEEEECSSCHHHHH-H-HHHHHHHTSCCSEEEEECSSG
T ss_pred             cccCCEEEEEeCCcHHHH-H-HHHHHHHHCCCCeEEEEECCH
Confidence            678999999998433222 2 123444445556666665554

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.90  E-value=6.5e-05  Score=62.38  Aligned_cols=95  Identities=11%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (394)
                      +++++|+|+|.+|+.+|+.| ...|.+|+++|++.... +...+.+       +.... .....+.+.+    +.++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~~~-------~~~~~-~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEI-------DALVI-NGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHC-------SSEEE-ESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHhc-------CcEEE-EcCCCCHHHHHHcCcccCCEE
Confidence            56899999999999999998 57799999999986542 2211111       11000 0011233322    5789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      ++++|......  .-......++++.+++-+
T Consensus        74 i~~~~~~~~~~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           74 IAVTGKEEVNL--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             EECCSCHHHHH--HHHHHHHHTTCCCEEEEC
T ss_pred             EEeeCCchHHH--HHHHHHHHcCCCEEEEEe
Confidence            99998533222  223345557777666544

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.89  E-value=5e-05  Score=73.71  Aligned_cols=95  Identities=15%  Similarity=0.217  Sum_probs=67.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..++++|||.|.+|+.+++.++...+ -+|.+|||++++. +++.+.+..    .+   .... +.++++++ ++|+|++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a-~~la~~~~~----~~---~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSYCED----RG---ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHHH----TT---CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHHHh----cC---ceEE-ECCHHHHh-CCCEEEE
Confidence            46799999999999999998754343 5899999997653 333333321    11   1123 56899999 9999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |+|..   ..++..   ..+++|..+++++..
T Consensus       194 aTp~~---~pv~~~---~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          194 TTPSR---KPVVKA---EWVEEGTHINAIGAD  219 (322)
T ss_dssp             CCCCS---SCCBCG---GGCCTTCEEEECSCC
T ss_pred             eeCCC---CceecH---HHcCCCeEEEECCCC
Confidence            99953   345543   457899999999643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.86  E-value=3e-05  Score=73.51  Aligned_cols=94  Identities=17%  Similarity=0.061  Sum_probs=61.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      |+++.|||.|.+|+.++..| ...|.+|++++|+.++..+ .. .+       +   ....   ++++ +.++|+|+.++
T Consensus       118 ~k~vlvlGaGGaaraia~~L-~~~G~~v~V~nRt~~ka~~-la-~~-------~---~~~~---~~~~-l~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL-KKQGLQVSVLNRSSRGLDF-FQ-RL-------G---CDCF---MEPP-KSAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCTTHHH-HH-HH-------T---CEEE---SSCC-SSCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-HH-HC-------C---CeEe---cHHH-hccCCEEEEcc
Confidence            88999999999999999998 5788999999999865322 11 11       1   1111   2223 23899999999


Q ss_pred             CCChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 016162          245 VLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (394)
Q Consensus       245 Plt~~t~~li~~~~l~-~mk~gailIN~aRG~  275 (394)
                      |..-.....++.+.+. .++++.+++|+....
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS
T ss_pred             cCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC
Confidence            9653222234444222 455666777766654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.84  E-value=2e-05  Score=76.69  Aligned_cols=103  Identities=14%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .++|+|||.|.||..+|..| ...|.+|.+|+|..  ..+...+ .+-..... +..........++++ +..+|+|++|
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L-~~~g~~V~~~~r~~--~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARL-ALAGEAINVLARGA--TLQALQT-AGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHH-HHTTCCEEEECCHH--HHHHHHH-TCEEEEETTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEChH--HHHHHHH-CCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            36899999999999999998 46688999999852  2222111 10000000 000001112346776 5899999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      +|. ..+..++ +..-..+++++++|.+..|
T Consensus        78 vk~-~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           78 VKA-PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             CCH-HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             CCc-hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence            994 4555444 2334557889999999988

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.83  E-value=1.5e-05  Score=79.33  Aligned_cols=83  Identities=27%  Similarity=0.432  Sum_probs=68.7

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCc---EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      ...+|.|||. |+.|+..++.+ +++|+   .|.++|++...+               |.         .+ +.+.++|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a-~~lGa~~~~V~v~D~~~~~~---------------g~---------~~-~~i~~aDi  266 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLL-HKVGIPDANILKWDIKETSR---------------GG---------PF-DEIPQADI  266 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHH-HHTTCCGGGEEEECHHHHTT---------------CS---------CC-THHHHSSE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHH-HhCCCCcCceEEeecccccc---------------CC---------ch-hhHhhCCE
Confidence            4668999999 99999999985 89998   899999865221               11         11 34669999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcC-CCCcEEEEcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~m-k~gailIN~a  272 (394)
                      |+.|+......-.+|.++.++.| |||++|||+|
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            99999987777789999999999 9999999996

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.81  E-value=6.9e-05  Score=75.15  Aligned_cols=100  Identities=20%  Similarity=0.265  Sum_probs=70.6

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhH--HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .-|+||||+|||||+-|.+=|..| +--|.+|++--|.....  ...+.     .....|     + ...+++|++++||
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNL-RDSGv~V~Vglr~~s~~e~~~S~~-----~A~~~G-----f-~v~~~~eA~~~AD  100 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWR-----KATENG-----F-KVGTYEELIPQAD  100 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHH-HHTTCEEEEEECHHHHHTTCHHHH-----HHHHTT-----C-EEEEHHHHGGGCS
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHH-HhcCCcEEEEeCCCCcccccchHH-----HHHHCC-----C-EecCHHHHHHhCC
Confidence            358999999999999999999998 78899988765422100  00000     011122     2 2358999999999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +|.+.+|.. ....++ ++....||+|+.|. .|+|=
T Consensus       101 vV~~L~PD~-~q~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          101 LVINLTPDK-QHSDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             EEEECSCGG-GHHHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             EEEEeCChh-hHHHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            999999954 334445 46889999999887 67765

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.79  E-value=2.6e-05  Score=74.51  Aligned_cols=116  Identities=14%  Similarity=0.088  Sum_probs=68.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcC-----C-cEEEEEcCchhhHHHHHHHhhhhhhhh-cCC-CCccccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGF-----K-MNLIYYDLYQATRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~-----G-~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~ell~~a  237 (394)
                      ++|+|||+|.||..+|..|+ ..     | .+|++|+| .. ..+...+..+-.... .+. .........+. +.+..+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~-~~~~~~~g~~~V~~~~r-~~-~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~   84 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLA-LRAAATDGLLEVSWIAR-GA-HLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGTV   84 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHHHHTTSSEEEEEECC-HH-HHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCCE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCccccCCCCCEEEEEc-HH-HHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCCC
Confidence            48999999999999999985 44     7 89999998 43 222221101100000 000 00000011233 457899


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      |+|++|+|... +..++ +.....++++.++|++..| +-.++.|.+.+.+
T Consensus        85 D~vil~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~  132 (317)
T 2qyt_A           85 DYILFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPD  132 (317)
T ss_dssp             EEEEECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCT
T ss_pred             CEEEEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCC
Confidence            99999999543 44444 3344556788999999776 2223555555543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.78  E-value=6.7e-05  Score=63.44  Aligned_cols=96  Identities=15%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH---HH-hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---el-l~~aDiV  240 (394)
                      ..++.|+|+|.+|+.+|+.| +..|.+|+++|+++.....         ++..|.... .....+.+   ++ +.++|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~~~---------~~~~g~~~i-~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKL-LASDIPLVVIETSRTRVDE---------LRERGVRAV-LGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHHHH---------HHHTTCEEE-ESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHH-HHCCCCEEEEECCHHHHHH---------HHHcCCCEE-ECCCCCHHHHHhcCcccCCEE
Confidence            34799999999999999998 6889999999998765321         111222111 11112322   22 5789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++++|.+..+..++  ..+..+.++..+|--++
T Consensus        76 i~~~~~~~~n~~~~--~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           76 ILTIPNGYEAGEIV--ASARAKNPDIEIIARAH  106 (140)
T ss_dssp             EECCSCHHHHHHHH--HHHHHHCSSSEEEEEES
T ss_pred             EEECCChHHHHHHH--HHHHHHCCCCeEEEEEC
Confidence            99999655554332  34455556666665433

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.77  E-value=4.5e-05  Score=73.60  Aligned_cols=119  Identities=16%  Similarity=0.137  Sum_probs=74.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh--cCCCCc-cccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPV-TWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~ell~~aDiV~l  242 (394)
                      ++|+|||.|.||..+|..| ...|.+|.+++|.......   + .+-....  .+.... ......+++++...+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L-~~~g~~V~~~~r~~~~~i~---~-~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALL-AKTGHCVSVVSRSDYETVK---A-KGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHH-HHTTCEEEEECSTTHHHHH---H-HCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCChHHHHH---h-CCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            5899999999999999998 4668999999997532111   1 0000000  111000 01123466776668999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ++|... +...+ +..-..+++++++|.+..| +-.++.|.+.+...++.
T Consensus        78 avK~~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           78 CIKVVE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCCCCT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             ecCCCC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            999543 34433 3444567889999998876 33346677776654443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.74  E-value=0.00012  Score=72.72  Aligned_cols=103  Identities=13%  Similarity=0.023  Sum_probs=62.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEc---CchhhHHHHHHHhhhhhhh--hcCC--CC--cccc-ccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD---LYQATRLEKFVTAYGQFLK--ANGE--QP--VTWK-RASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d---~~~~~~~~~~~~~~~~~~~--~~~~--~~--~~~~-~~~~l~ell~  235 (394)
                      ++|+|||.|.||..+|..|++.-|.+|++||   ++.... +......+-.+.  ..+.  ..  .... ...++++.+.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERW-TKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHH-HHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHH-HHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            4899999999999999998422489999999   543321 111110000000  0000  00  0011 2357888899


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      .+|+|++++|.. ....++ ++.-..+++++++++.
T Consensus        82 ~aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999943 344443 3444567889999985

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.73  E-value=6.8e-05  Score=72.42  Aligned_cols=116  Identities=18%  Similarity=0.261  Sum_probs=69.1

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-CCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ...++|+|||.|.||..+|..| ...|.+|..| ++.+. .+...+ .+-.....+ ..........++++ +..+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L-~~~G~~V~l~-~~~~~-~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGML-ARAGHEVILI-ARPQH-VQAIEA-TGLRLETQSFDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHH-HHTTCEEEEE-CCHHH-HHHHHH-HCEEEECSSCEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHH-HHCCCeEEEE-EcHhH-HHHHHh-CCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEE
Confidence            4567999999999999999998 4678999999 66533 222111 000000000 00001111245544 68899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                      +++|.. .+..++ +..-..+++++++|.+..|= -.++.|.+.+
T Consensus        92 lavk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~  133 (318)
T 3hwr_A           92 FCVKST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLL  133 (318)
T ss_dssp             ECCCGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHC
T ss_pred             EEcccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHc
Confidence            999953 555544 34445678999999987763 2234555555

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.72  E-value=4.9e-05  Score=61.18  Aligned_cols=94  Identities=17%  Similarity=0.120  Sum_probs=59.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV  240 (394)
                      .+++++|+|.|.||+.+++.| ...| .+|+++|++.......         ...+....  ......++.+++..+|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~~~~---------~~~~~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALL-KTSSNYSVTVADHDLAALAVL---------NRMGVATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHH-HHCSSEEEEEEESCHHHHHHH---------HTTTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCHHHHHHH---------HhCCCcEEEecCCCHHHHHHHHcCCCEE
Confidence            367999999999999999997 5778 8999999987543211         11111000  011113456778899999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +.++|... +..++.    ...+.|...++.+
T Consensus        74 i~~~~~~~-~~~~~~----~~~~~g~~~~~~~  100 (118)
T 3ic5_A           74 ISAAPFFL-TPIIAK----AAKAAGAHYFDLT  100 (118)
T ss_dssp             EECSCGGG-HHHHHH----HHHHTTCEEECCC
T ss_pred             EECCCchh-hHHHHH----HHHHhCCCEEEec
Confidence            99998332 222221    1234577777765

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.69  E-value=0.00029  Score=71.28  Aligned_cols=145  Identities=14%  Similarity=0.088  Sum_probs=84.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHH-----------hhhhhhhhcCCCCccccccCCHHH
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-----------AYGQFLKANGEQPVTWKRASSMDE  232 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~e  232 (394)
                      +-.+|+|||+|-+|..+|..++ ..|.+|++||.+..+. +....           ++-......|.    .....+.++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A-~~G~~V~g~Did~~kV-~~ln~G~~pi~Epgl~ell~~~~~~g~----l~~tt~~~~   93 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFA-LLGHRVVGYDVNPSIV-ERLRAGRPHIYEPGLEEALGRALSSGR----LSFAESAEE   93 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHHHTTC----EEECSSHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHCCCCCCCCCCHHHHHHHHHHcCC----eeEEcCHHH
Confidence            4568999999999999999984 6799999999987642 11110           00000001111    122357889


Q ss_pred             HhcccCEEEEcCCCChhhh-------hccc--HHHHhcC---CCCcEEEEcCCCcccCHHHHHH-HHHcCCcceEEeec-
Q 016162          233 VLREADVISLHPVLDKTTY-------HLIN--KERLATM---KKEAILVNCSRGPVIDEVALVE-HLKQNPMFRVGLDV-  298 (394)
Q Consensus       233 ll~~aDiV~l~lPlt~~t~-------~li~--~~~l~~m---k~gailIN~aRG~~vde~aL~~-aL~~g~l~gaalDV-  298 (394)
                      .++.||++++|+| ||...       .+..  +..-+.+   .+|.++|.-|+-.+=-++.+.. .+++.. .+.-.+| 
T Consensus        94 ai~~ad~~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~  171 (444)
T 3vtf_A           94 AVAATDATFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVA  171 (444)
T ss_dssp             HHHTSSEEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEE
T ss_pred             HHhcCCceEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceee
Confidence            9999999999998 44321       1221  1122334   3688999999866644555443 444332 2222222 


Q ss_pred             cCCCCCCC----CccccCCceE
Q 016162          299 FEDEPYMK----PGLSEMKNAI  316 (394)
Q Consensus       299 ~~~EP~~~----~~L~~~~nvi  316 (394)
                      |.+|-+..    ..+...++|+
T Consensus       172 ~~PErl~eG~a~~d~~~~~riV  193 (444)
T 3vtf_A          172 SNPEFLREGSALEDFFKPDRIV  193 (444)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEE
T ss_pred             cCcccccCCccccccccCCcEE
Confidence            45665532    1355666766

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.69  E-value=0.00018  Score=59.76  Aligned_cols=100  Identities=11%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH---HH-hcccC
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREAD  238 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---el-l~~aD  238 (394)
                      +.+++++|+|+|.+|+.+++.| ...|.+|+++|++.... +.        +...+.. .......+.+   ++ +.++|
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l-~~~g~~v~~~d~~~~~~-~~--------~~~~~~~-~~~~d~~~~~~l~~~~~~~~d   72 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NA--------YASYATH-AVIANATEENELLSLGIRNFE   72 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HT--------TTTTCSE-EEECCTTCHHHHHTTTGGGCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHhCCE-EEEeCCCCHHHHHhcCCCCCC
Confidence            5678999999999999999998 67899999999976432 11        1111110 0001122333   22 57899


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +|++++|...++.. .-......+.+. .+|-.+++.
T Consensus        73 ~vi~~~~~~~~~~~-~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           73 YVIVAIGANIQAST-LTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             EEEECCCSCHHHHH-HHHHHHHHTTCS-EEEEECCSH
T ss_pred             EEEECCCCchHHHH-HHHHHHHHcCCC-eEEEEeCCH
Confidence            99999986423221 123334445665 455544443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.69  E-value=0.00014  Score=68.98  Aligned_cols=75  Identities=12%  Similarity=0.060  Sum_probs=51.8

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READ  238 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aD  238 (394)
                      .+++|+++.|+|.|.+|+.++..| ...|+ +|++++|+.++. ++..+.+.       ......   .+++++- .++|
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~-------~~~~~~---~~~~~l~~~~~D  183 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPF-LQAGPSELVIANRDMAKA-LALRNELD-------HSRLRI---SRYEALEGQSFD  183 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHHC-------CTTEEE---ECSGGGTTCCCS
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhc-------cCCeeE---eeHHHhcccCCC
Confidence            468899999999999999999998 57896 999999987653 22222221       101111   2333332 7899


Q ss_pred             EEEEcCCCC
Q 016162          239 VISLHPVLD  247 (394)
Q Consensus       239 iV~l~lPlt  247 (394)
                      +|+.++|..
T Consensus       184 ivInaTp~g  192 (272)
T 3pwz_A          184 IVVNATSAS  192 (272)
T ss_dssp             EEEECSSGG
T ss_pred             EEEECCCCC
Confidence            999999943

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.64  E-value=5.9e-05  Score=71.92  Aligned_cols=100  Identities=20%  Similarity=0.226  Sum_probs=63.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+++|+++.|+|.|.+|+.++..| ...|+ +|++++|+.++. ++..+.+.    ..+  ..   ...+++++..++|+
T Consensus       122 ~~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a-~~la~~~~----~~~--~~---~~~~~~~l~~~aDi  190 (281)
T 3o8q_A          122 VLLKGATILLIGAGGAARGVLKPL-LDQQPASITVTNRTFAKA-EQLAELVA----AYG--EV---KAQAFEQLKQSYDV  190 (281)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HTTCCSEEEEEESSHHHH-HHHHHHHG----GGS--CE---EEEEGGGCCSCEEE
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HhcCCCeEEEEECCHHHH-HHHHHHhh----ccC--Ce---eEeeHHHhcCCCCE
Confidence            368899999999999999999998 57896 999999987652 22222221    111  01   11244555578999


Q ss_pred             EEEcCCCChhhh-hcccHHHHhcCCCCcEEEEcCCC
Q 016162          240 ISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       240 V~l~lPlt~~t~-~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |+.++|..-... ..+..   +.++++.+++|+.-.
T Consensus       191 IInaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          191 IINSTSASLDGELPAIDP---VIFSSRSVCYDMMYG  223 (281)
T ss_dssp             EEECSCCCC----CSCCG---GGEEEEEEEEESCCC
T ss_pred             EEEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCC
Confidence            999999653211 12322   234566666676654

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.63  E-value=0.00027  Score=67.53  Aligned_cols=109  Identities=18%  Similarity=0.312  Sum_probs=68.8

Q ss_pred             CCeEEEEecChHHHH-HHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       165 gktvGIIGlG~IG~~-vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      -.++||||+|.||+. .++.+++.-+.++. ++|+++... +.+.+.|       +.     ..+.++++++.+.|+|++
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------~~-----~~~~~~~~ll~~~D~V~i   72 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKR-EKICSDY-------RI-----MPFDSIESLAKKCDCIFL   72 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHH-HHHHHHH-------TC-----CBCSCHHHHHTTCSEEEE
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------CC-----CCcCCHHHHHhcCCEEEE
Confidence            368999999999997 88877433577877 789987643 2222333       21     125799999999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHcCCc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~ga-ilIN-~aRG~~vde~aL~~aL~~g~l  291 (394)
                      |+|........  ..   .++.|. +++. -.--.+-+.++|.++.++..+
T Consensus        73 ~tp~~~h~~~~--~~---al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           73 HSSTETHYEII--KI---LLNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             CCCGGGHHHHH--HH---HHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             eCCcHhHHHHH--HH---HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            99943322211  22   233343 4444 233345566778877776543

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.62  E-value=0.00013  Score=72.29  Aligned_cols=190  Identities=15%  Similarity=0.179  Sum_probs=118.9

Q ss_pred             CCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhc
Q 016162          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (394)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~  187 (394)
                      .+|++.|+   --.-+|=-+++-+++.+|                     ..|..+...+|.|+|.|..|..+|+.+ .+
T Consensus       155 ~~ipvf~D---DiqGTa~V~lAall~al~---------------------l~g~~l~d~kVVi~GAGaAG~~iA~ll-~~  209 (398)
T 2a9f_A          155 CHIPVFHD---DQHGTAIVVLAAIFNSLK---------------------LLKKSLDEVSIVVNGGGSAGLSITRKL-LA  209 (398)
T ss_dssp             CSSCEEEH---HHHHHHHHHHHHHHHHHH---------------------TTTCCTTSCEEEEECCSHHHHHHHHHH-HH
T ss_pred             CCcceecc---hhhhHHHHHHHHHHHHHH---------------------HhCCCCCccEEEEECCCHHHHHHHHHH-HH
Confidence            35888883   223445556666666555                     134578999999999999999999997 78


Q ss_pred             CCc-EEEEEcCchh------hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHh
Q 016162          188 FKM-NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (394)
Q Consensus       188 ~G~-~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~  260 (394)
                      +|. +|+.+|+..-      ..+..+.+.|.....   .    .....+|+|.+..+|+++=.-     +.+++.++.++
T Consensus       210 ~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~---~----~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk  277 (398)
T 2a9f_A          210 AGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN---R----EFKSGTLEDALEGADIFIGVS-----APGVLKAEWIS  277 (398)
T ss_dssp             HTCCEEEEEETTEECCTTCCCSCCC---CHHHHHS---C----TTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHH
T ss_pred             cCCCeEEEEECCCcccCCccccchHHHHHHhhccC---c----ccchhhHHHHhccCCEEEecC-----CCCCCCHHHHH
Confidence            899 9999998730      112222223321110   0    012357999999999988662     25899999999


Q ss_pred             cCCCCcEEEEcCCCcc-cCHHHHHHHHHcCC-cceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHH-----HHHH
Q 016162          261 TMKKEAILVNCSRGPV-IDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR-----EGMA  333 (394)
Q Consensus       261 ~mk~gailIN~aRG~~-vde~aL~~aL~~g~-l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~-----~~~~  333 (394)
                      .|+++++++.+|+... +..++.   .+.|+ +.+-+   -+..|      -+-.|+++-|=++-....++     +.|.
T Consensus       278 ~Ma~~pIIfalsNPt~E~~pe~a---~~~g~~i~atG---rs~~p------~Q~NN~~~FPgi~~Gal~~~a~~I~d~m~  345 (398)
T 2a9f_A          278 KMAARPVIFAMANPIPEIYPDEA---LEAGAYIVGTG---RSDFP------NQINNVLAFPGIFRGALDARAKTITVEMQ  345 (398)
T ss_dssp             TSCSSCEEEECCSSSCSSCHHHH---HTTTCSEEEES---CTTSS------SBCCGGGTHHHHHHHHHHHTCSSCCHHHH
T ss_pred             hhCCCCEEEECCCCCccCCHHHH---HHhCCeEEEeC---CCCCC------CcCCceeEcchHHHHHHHcCCcCCCHHHH
Confidence            9999999999998654 333333   33355 22222   11122      24467887776653222211     5566


Q ss_pred             HHHHHHHHHHHcC
Q 016162          334 TLAALNVLGKIKG  346 (394)
Q Consensus       334 ~~~~~ni~~~l~g  346 (394)
                      ..+++.|-....-
T Consensus       346 ~aAa~alA~~~~~  358 (398)
T 2a9f_A          346 IAAAKGIASLVPD  358 (398)
T ss_dssp             HHHHHHHHHTCSS
T ss_pred             HHHHHHHHhcCCc
Confidence            6666666665544

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.61  E-value=0.00012  Score=69.30  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (394)
                      ++.|++++|+|.|.+|+.++..| ...|.+|++++|+.++. ++..+.+..    .+  ..   ...+++++.+ ++|+|
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L-~~~G~~v~v~~R~~~~a-~~l~~~~~~----~~--~~---~~~~~~~~~~~~~Div  184 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPL-LQAQQNIVLANRTFSKT-KELAERFQP----YG--NI---QAVSMDSIPLQTYDLV  184 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHH-HHTTCEEEEEESSHHHH-HHHHHHHGG----GS--CE---EEEEGGGCCCSCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHHccc----cC--Ce---EEeeHHHhccCCCCEE
Confidence            57899999999999999999998 57789999999987542 222222211    01  01   0123334333 89999


Q ss_pred             EEcCCCCh
Q 016162          241 SLHPVLDK  248 (394)
Q Consensus       241 ~l~lPlt~  248 (394)
                      +.++|...
T Consensus       185 In~t~~~~  192 (272)
T 1p77_A          185 INATSAGL  192 (272)
T ss_dssp             EECCCC--
T ss_pred             EECCCCCC
Confidence            99999543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.60  E-value=0.00032  Score=66.16  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  240 (394)
                      ++.|+++.|+|.|.+|+.+++.| ...|.+|++++|+.++. ++..+.++.    .+  ..   ...+++++. .++|+|
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L-~~~G~~V~v~~R~~~~~-~~la~~~~~----~~--~~---~~~~~~~~~~~~~Div  184 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLFAH----TG--SI---QALSMDELEGHEFDLI  184 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHTGG----GS--SE---EECCSGGGTTCCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHHHhhc----cC--Ce---eEecHHHhccCCCCEE
Confidence            57899999999999999999998 57889999999987542 222222211    01  01   112333333 589999


Q ss_pred             EEcCCCChhhhhc--ccHHHHhcCCCCcEEEEcCCCc
Q 016162          241 SLHPVLDKTTYHL--INKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       241 ~l~lPlt~~t~~l--i~~~~l~~mk~gailIN~aRG~  275 (394)
                      +.++|.... ..+  +..+   .++++.+++|+....
T Consensus       185 Vn~t~~~~~-~~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          185 INATSSGIS-GDIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             EECCSCGGG-TCCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             EECCCCCCC-CCCCCCCHH---HcCCCCEEEEeccCC
Confidence            999995432 111  2222   246778888877653

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.57  E-value=0.00079  Score=64.13  Aligned_cols=80  Identities=23%  Similarity=0.255  Sum_probs=55.8

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      +++|+++.|+|.|.+|+.++..| ...|+ +|++++|+..+. ++..+.+..   .............++++.++++|+|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~~---~~~~~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSHHHH-HHHHHHHHH---HHTSCCEEEECSTTHHHHHHHSSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEECCHHHH-HHHHHHHHh---hcCCceEEEcCHHHHHHHHhcCCEE
Confidence            57899999999999999999998 57898 799999997653 222222211   0000111111234788889999999


Q ss_pred             EEcCCC
Q 016162          241 SLHPVL  246 (394)
Q Consensus       241 ~l~lPl  246 (394)
                      +.++|.
T Consensus       199 InaTp~  204 (283)
T 3jyo_A          199 VNATPM  204 (283)
T ss_dssp             EECSST
T ss_pred             EECCCC
Confidence            999995

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.57  E-value=0.00018  Score=69.14  Aligned_cols=120  Identities=13%  Similarity=0.169  Sum_probs=73.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh-cCCCCc-cccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.||..+|..| ...|.+|..|+|...   +.. ...+-.... .+.... ......++++ +..+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L-~~~g~~V~~~~r~~~---~~i-~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALL-QRSGEDVHFLLRRDY---EAI-AGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHH-HHTSCCEEEECSTTH---HHH-HHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCeEEEEEcCcH---HHH-HhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            5899999999999999998 466889999999752   211 111100000 010000 0111245655 6899999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      +|.. .+...+ +..-..+++++++|.+.-| +-.++.|.+.+...++.++
T Consensus        77 vk~~-~~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           77 LKTF-ANSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             CCGG-GGGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             cCCC-CcHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            9943 334333 3444567889999999876 2235667776655454443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.57  E-value=0.00053  Score=66.35  Aligned_cols=81  Identities=12%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCc---hhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV  233 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el  233 (394)
                      .+++||++.|+|.|.+|+.++..| ...|+ +|++++|+   ..+ .++..+.+..   ..+ .........+   +.+.
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~-a~~la~~~~~---~~~-~~~~~~~~~~~~~l~~~  223 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQA-ALDGVKEISIFNRKDDFYAN-AEKTVEKINS---KTD-CKAQLFDIEDHEQLRKE  223 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHH-HHHHHHHHHH---HSS-CEEEEEETTCHHHHHHH
T ss_pred             CCccCCEEEEECCChHHHHHHHHH-HHCCCCEEEEEECCCchHHH-HHHHHHHhhh---hcC-CceEEeccchHHHHHhh
Confidence            368899999999999999999998 58898 89999998   433 2222222211   011 1111112223   5567


Q ss_pred             hcccCEEEEcCCCC
Q 016162          234 LREADVISLHPVLD  247 (394)
Q Consensus       234 l~~aDiV~l~lPlt  247 (394)
                      +.++|+|+.++|..
T Consensus       224 l~~aDiIINaTp~G  237 (315)
T 3tnl_A          224 IAESVIFTNATGVG  237 (315)
T ss_dssp             HHTCSEEEECSSTT
T ss_pred             hcCCCEEEECccCC
Confidence            88999999999943

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.55  E-value=0.00022  Score=59.84  Aligned_cols=72  Identities=14%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi  239 (394)
                      .++++.|+|+|.+|+.+|+.| ...|.+|+++|+++.....         +...+.... .....+.+.+    +.++|+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L-~~~g~~V~~id~~~~~~~~---------~~~~~~~~~-~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVREL-TAAGKKVLAVDKSKEKIEL---------LEDEGFDAV-IADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHHHH---------HHHTTCEEE-ECCTTCHHHHHHSCCTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHHHH---------HHHCCCcEE-ECCCCCHHHHHhCCcccCCE
Confidence            457899999999999999998 6789999999998754221         111121100 1112233322    468999


Q ss_pred             EEEcCCC
Q 016162          240 ISLHPVL  246 (394)
Q Consensus       240 V~l~lPl  246 (394)
                      |++++|.
T Consensus        74 vi~~~~~   80 (141)
T 3llv_A           74 VLITGSD   80 (141)
T ss_dssp             EEECCSC
T ss_pred             EEEecCC
Confidence            9999993

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.50  E-value=0.0003  Score=67.32  Aligned_cols=168  Identities=19%  Similarity=0.177  Sum_probs=105.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhcccCCcEEEEcccCccccch
Q 016162           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (394)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-----~~~d~ii~~~~--~~i~~~-~l~~l~~l~~k~I~~~g~G~d~id~  102 (394)
                      +..++.|++.+....++ ..+++|+.+.+.     ++.++|+++.+  ..++++ ++++.+-.  |       -+|.+--
T Consensus        76 k~c~~vGi~s~~~~lp~-~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--K-------DVDG~hp  145 (303)
T 4b4u_A           76 NACRRVGMDSLKIELPQ-ETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLA--K-------DVDGVTC  145 (303)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--G-------CTTCCCH
T ss_pred             HHHHHcCCeEEEEecCc-cCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcc--c-------ccCccCc
Confidence            33456788877666554 357888887653     25789999864  445544 34443322  2       2333321


Q ss_pred             hHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChH-HHHHH
Q 016162          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (394)
Q Consensus       103 ~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA  181 (394)
                      ...   |-.+.+.++ ....++.-++    .+++                     ..+.+++||++.|||-++| |+.+|
T Consensus       146 ~N~---G~L~~g~~~-~~PcTp~gv~----~lL~---------------------~~~i~l~Gk~vvViGRS~iVGkPla  196 (303)
T 4b4u_A          146 LGF---GRMAMGEAA-YGSATPAGIM----TILK---------------------ENNIEIAGKHAVVVGRSAILGKPMA  196 (303)
T ss_dssp             HHH---HHHHTTCCC-CCCHHHHHHH----HHHH---------------------HTTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             chH---HHhcCCCCc-ccCccHHHHH----HHHH---------------------HHCCCCCCCEEEEEeccccccchHH
Confidence            111   111122333 2223332222    1221                     1235799999999998875 99999


Q ss_pred             HHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhc
Q 016162          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (394)
Q Consensus       182 ~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~  261 (394)
                      ..| ..-|++|+.....                            ..++.+..++||+|+.++..    .++|..+.   
T Consensus       197 ~LL-~~~~ATVTi~Hs~----------------------------T~dl~~~~~~ADIvV~A~G~----p~~i~~d~---  240 (303)
T 4b4u_A          197 MML-LQANATVTICHSR----------------------------TQNLPELVKQADIIVGAVGK----AELIQKDW---  240 (303)
T ss_dssp             HHH-HHTTCEEEEECTT----------------------------CSSHHHHHHTCSEEEECSCS----TTCBCGGG---
T ss_pred             HHH-HhcCCEEEEecCC----------------------------CCCHHHHhhcCCeEEeccCC----CCcccccc---
Confidence            987 6789999876432                            24789999999999999752    45777765   


Q ss_pred             CCCCcEEEEcCC
Q 016162          262 MKKEAILVNCSR  273 (394)
Q Consensus       262 mk~gailIN~aR  273 (394)
                      .|+|+++||++-
T Consensus       241 vk~GavVIDVGi  252 (303)
T 4b4u_A          241 IKQGAVVVDAGF  252 (303)
T ss_dssp             SCTTCEEEECCC
T ss_pred             ccCCCEEEEece
Confidence            489999999975

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.47  E-value=0.00063  Score=65.61  Aligned_cols=69  Identities=26%  Similarity=0.465  Sum_probs=50.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      .+|||||+|.||+..++.+.+.-+++++ ++|+++... +.+.+.|       +     .. +.+++++++  +.|+|++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~-----~~-~~~~~~~l~~~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAA-EAIAGAY-------G-----CE-VRTIDAIEAAADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------T-----CE-ECCHHHHHHCTTCCEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHH-HHHHHHh-------C-----CC-cCCHHHHhcCCCCCEEEE
Confidence            4899999999999999987433478877 689987542 2222222       1     12 578999998  8999999


Q ss_pred             cCCCCh
Q 016162          243 HPVLDK  248 (394)
Q Consensus       243 ~lPlt~  248 (394)
                      |+|...
T Consensus        70 ~tp~~~   75 (331)
T 4hkt_A           70 CTPTDT   75 (331)
T ss_dssp             CSCGGG
T ss_pred             eCCchh
Confidence            999443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.44  E-value=0.00041  Score=67.28  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=65.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      .+|||||+|.||+..++.+++.-+++++ ++|++.... +.+.+.|       +     ...+.++++++.  +.|+|++
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~~~l~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGA-QRLAEAN-------G-----AEAVASPDEVFARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHTT-------T-----CEEESSHHHHTTCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433478876 689887542 2222222       2     224579999998  8999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCc
Q 016162          243 HPVLDKTTYHLINKERLATMKKE-AILVNCS-RGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~g-ailIN~a-RG~~vde~aL~~aL~~g~l  291 (394)
                      |+|........  ...+   +.| .+++.-- .-.+-+.++|.++.++..+
T Consensus        72 ~tp~~~h~~~~--~~al---~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~  117 (344)
T 3euw_A           72 GSPTSTHVDLI--TRAV---ERGIPALCEKPIDLDIEMVRACKEKIGDGAS  117 (344)
T ss_dssp             CSCGGGHHHHH--HHHH---HTTCCEEECSCSCSCHHHHHHHHHHHGGGGG
T ss_pred             eCCchhhHHHH--HHHH---HcCCcEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            99943332211  2222   222 2444321 2233445556666665443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.44  E-value=0.00058  Score=65.06  Aligned_cols=70  Identities=14%  Similarity=0.103  Sum_probs=50.2

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .++.|+++.|+|.|.+|+.++..| ...|+ +|++++|+.++.. +..+          .  .....+.++++ + ++|+
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L-~~~G~~~v~v~nRt~~ka~-~La~----------~--~~~~~~~~l~~-l-~~Di  181 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYL-KDNFAKDIYVVTRNPEKTS-EIYG----------E--FKVISYDELSN-L-KGDV  181 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHH-HHTTCSEEEEEESCHHHHH-HHCT----------T--SEEEEHHHHTT-C-CCSE
T ss_pred             CCccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHHH-HHHH----------h--cCcccHHHHHh-c-cCCE
Confidence            357899999999999999999998 67898 9999999976521 1110          0  11111223444 4 8999


Q ss_pred             EEEcCCC
Q 016162          240 ISLHPVL  246 (394)
Q Consensus       240 V~l~lPl  246 (394)
                      |+.++|.
T Consensus       182 vInaTp~  188 (282)
T 3fbt_A          182 IINCTPK  188 (282)
T ss_dssp             EEECSST
T ss_pred             EEECCcc
Confidence            9999995

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.42  E-value=0.00025  Score=71.65  Aligned_cols=118  Identities=19%  Similarity=0.185  Sum_probs=79.6

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCc---EEEEEc----Cc----hhhH---HHHHHHhhhhhhhhcCCCCcccc
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYD----LY----QATR---LEKFVTAYGQFLKANGEQPVTWK  225 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~---~V~~~d----~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~  225 (394)
                      |..+.++++.|+|.|..|+.+++.| ...|+   +|+++|    |+    ....   +..+...|.   .   .... ..
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L-~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a---~---~~~~-~~  252 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRIL-TEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLL---K---KTNG-EN  252 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHH-HHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHH---T---TSCT-TC
T ss_pred             CCCccCCEEEEECccHHHHHHHHHH-HHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHh---h---cccc-cc
Confidence            3568899999999999999999998 68898   799999    76    2211   111111111   0   0000 00


Q ss_pred             ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       226 ~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      ...++.+.+..+|+|+.+.|..+   +++.++.++.|+++.++++++...  .|.-+.+|.+.|.
T Consensus       253 ~~~~L~e~l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          253 IEGGPQEALKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             CCSSHHHHHTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             ccccHHHHhccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            13578899999999999998422   556667788899999999995533  4444555555553

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.40  E-value=0.0011  Score=71.11  Aligned_cols=147  Identities=18%  Similarity=0.196  Sum_probs=93.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHH-hhh---hhhhhcCC--CCccccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYG---QFLKANGE--QPVTWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~-~~~---~~~~~~~~--~~~~~~~~~~l~ell~~a  237 (394)
                      ++|||||.|.||+.+|..+ ...|++|+.+|+.++.....  ... .+.   ........  .........+.+ .+++|
T Consensus       317 ~~v~ViGaG~MG~gIA~~~-a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a  394 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISF-ARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV  394 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred             cEEEEEcccHHHHHHHHHH-HhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence            6899999999999999987 47899999999987642211  110 000   00010111  111112233444 47899


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEE
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIV  317 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvil  317 (394)
                      |+|+=++|-+.+.+.-+-++.=+.++++++|-.-+.+  +.-..|.++++ ..-+..++-.|.  |.+.-||.+   ||-
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfn--P~~~m~LVE---vi~  466 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFS--PAHVMRLLE---VIP  466 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCS--STTTCCEEE---EEE
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccC--CCCCCceEE---Eec
Confidence            9999999988877766656666778999998554433  44566776654 345678888775  332235555   676


Q ss_pred             cCCCC
Q 016162          318 VPHIA  322 (394)
Q Consensus       318 TPHia  322 (394)
                      +|+.+
T Consensus       467 g~~Ts  471 (742)
T 3zwc_A          467 SRYSS  471 (742)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            66544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.39  E-value=0.00067  Score=65.06  Aligned_cols=109  Identities=15%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|||||+|.||+. +++.+++.-++++. ++|++.... +.+.+.|       +.     ..+.+++++..++|+|+++
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~~~~~-------g~-----~~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------RI-----PYADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------TC-----CBCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------CC-----CccCcHHHhhcCCCEEEEe
Confidence            48999999999997 88876433477876 889887543 2222222       21     1245777776789999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 016162          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +|.......     ....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        73 tp~~~h~~~-----~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           73 SSTASHFDV-----VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             SCTTHHHHH-----HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCchhHHHH-----HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            994433221     222344565 55652 233445667788887776544

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.38  E-value=0.0011  Score=64.10  Aligned_cols=81  Identities=16%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCc---hhhHHHHHHHhhhhhhhhcCCCCccccccCCH---HHH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV  233 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el  233 (394)
                      .+++|+++.|+|.|.+|+.++..| ...|+ +|++++|+   ..+. ++..+.+..   ..+ .........++   .+.
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L-~~~G~~~v~v~nRt~~~~~~a-~~la~~~~~---~~~-~~v~~~~~~~l~~~~~~  217 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQA-AIEGIKEIKLFNRKDDFFEKA-VAFAKRVNE---NTD-CVVTVTDLADQHAFTEA  217 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTHHHHH-HHHHHHHHH---HSS-CEEEEEETTCHHHHHHH
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHcCCCEEEEEECCCchHHHH-HHHHHHhhh---ccC-cceEEechHhhhhhHhh
Confidence            368899999999999999999998 57898 89999998   4332 222222211   001 11111223454   567


Q ss_pred             hcccCEEEEcCCCC
Q 016162          234 LREADVISLHPVLD  247 (394)
Q Consensus       234 l~~aDiV~l~lPlt  247 (394)
                      +.++|+|+.++|..
T Consensus       218 l~~~DiIINaTp~G  231 (312)
T 3t4e_A          218 LASADILTNGTKVG  231 (312)
T ss_dssp             HHHCSEEEECSSTT
T ss_pred             ccCceEEEECCcCC
Confidence            88999999999953

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.37  E-value=0.00033  Score=67.21  Aligned_cols=106  Identities=17%  Similarity=0.125  Sum_probs=65.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      .+|||||+|.||+..++.+++.-+.++ .++|+++.... .    +       ...   ...+.+++++++  ++|+|++
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~-~----~-------~~~---~~~~~~~~~~l~~~~~D~V~i   75 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLA-L----V-------PPG---CVIESDWRSVVSAPEVEAVII   75 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHT-T----C-------CTT---CEEESSTHHHHTCTTCCEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHH-H----H-------Hhh---CcccCCHHHHhhCCCCCEEEE
Confidence            479999999999999998743336775 48898865421 1    0       011   123568899986  7999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~l  291 (394)
                      ++|......     -....++.|. ++++- .--.+-+.++|.++.++..+
T Consensus        76 ~tp~~~h~~-----~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~  121 (315)
T 3c1a_A           76 ATPPATHAE-----ITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV  121 (315)
T ss_dssp             ESCGGGHHH-----HHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred             eCChHHHHH-----HHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence            999332211     1223345564 55552 22234455677777765443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.37  E-value=0.00076  Score=57.49  Aligned_cols=100  Identities=8%  Similarity=0.007  Sum_probs=58.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC---CHHHH-hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV-LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el-l~~aDiV  240 (394)
                      .+++.|+|+|.+|+.+++.| ...|.+|+++|+++....+...+.+     ..+.. .......   .+++. +.++|.|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~-~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRL-----GDNAD-VIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHH-----CTTCE-EEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCCEEEEECCChHHHHHHHHhh-----cCCCe-EEEcCCCCHHHHHHcChhhCCEE
Confidence            56899999999999999998 6789999999997432211111110     11110 0000112   24444 7899999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +++++....+  +.-......+.+...+|...+
T Consensus        76 i~~~~~d~~n--~~~~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           76 LALSDNDADN--AFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EECSSCHHHH--HHHHHHHHHHTSSSCEEEECS
T ss_pred             EEecCChHHH--HHHHHHHHHHCCCCEEEEEEC
Confidence            9999854333  222344444544444544433

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.36  E-value=0.00038  Score=67.09  Aligned_cols=118  Identities=12%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .++|+|||.|.||..+|..++ ..|. +|+.||++.........+ ......... .........++ +.++.||+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la-~~g~~~V~l~D~~~~~~~~~~~~-l~~~~~~~~-~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVG-KDNLADVVLFDIAEGIPQGKALD-ITHSMVMFG-STSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHH-HHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCCchHHHHHHHH-HHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEe
Confidence            468999999999999999985 4476 899999986432211111 000000000 11112222466 678999999999


Q ss_pred             CCC--Ch---------hhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016162          244 PVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (394)
Q Consensus       244 lPl--t~---------~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL  286 (394)
                      ++.  .+         ++..++.  .+.+....|++++++++...-+....+.+..
T Consensus        80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           80 ASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            842  11         1111111  1122223469999999876545455555543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.36  E-value=0.00063  Score=66.30  Aligned_cols=70  Identities=21%  Similarity=0.295  Sum_probs=50.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHhc-CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (394)
                      -.+|||||+|.||+..++.+++. -+++++ ++|++.... +.+.+.|       +     ...+.++++++.  +.|+|
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V   79 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAAL-KAAVERT-------G-----ARGHASLTDMLAQTDADIV   79 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHH-------C-----CEEESCHHHHHHHCCCSEE
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEE
Confidence            35899999999999999987433 378865 789887543 2222222       2     124579999997  79999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      ++|+|..
T Consensus        80 ~i~tp~~   86 (354)
T 3q2i_A           80 ILTTPSG   86 (354)
T ss_dssp             EECSCGG
T ss_pred             EECCCcH
Confidence            9999943

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.36  E-value=0.00033  Score=67.42  Aligned_cols=78  Identities=15%  Similarity=0.186  Sum_probs=49.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhc-CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||.|.+|..+|..++.. +|.+|+.||+..... +.....+.+...... .........++++ ++.||+|++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~~~-l~~aDvViiav   77 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIP-QGKALDMYESGPVGL-FDTKVTGSNDYAD-TANSDIVIITA   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCEEEEESCGGG-GTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHhHHhhhhccc-CCcEEEECCCHHH-HCCCCEEEEeC
Confidence            3799999999999999988653 688999999986432 211111100000000 1111222256766 89999999999


Q ss_pred             CC
Q 016162          245 VL  246 (394)
Q Consensus       245 Pl  246 (394)
                      |.
T Consensus        78 ~~   79 (310)
T 1guz_A           78 GL   79 (310)
T ss_dssp             SC
T ss_pred             CC
Confidence            73

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.33  E-value=0.00049  Score=58.58  Aligned_cols=104  Identities=13%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             CCCeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +-++|+|||.    |++|..+++.| +..|++|+..+|.....  .             ..  +...+.+++|+-...|+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l-~~~G~~v~~vnp~~~~~--~-------------i~--G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE--E-------------LF--GEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS--E-------------ET--TEECBSSGGGCCSCCSE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHH-HHCCCEEEEeCCCcccC--c-------------CC--CEEecCCHHHCCCCCCE
Confidence            4568999999    89999999998 68888877776652110  0             01  12235688888888999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +++++|. +....++. +..+. ..+.++++.+.   . ++++.+.+++..+.
T Consensus        74 avi~vp~-~~~~~v~~-~~~~~-gi~~i~~~~g~---~-~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           74 LDVFRPP-SALMDHLP-EVLAL-RPGLVWLQSGI---R-HPEFEKALKEAGIP  119 (140)
T ss_dssp             EEECSCH-HHHTTTHH-HHHHH-CCSCEEECTTC---C-CHHHHHHHHHTTCC
T ss_pred             EEEEeCH-HHHHHHHH-HHHHc-CCCEEEEcCCc---C-HHHHHHHHHHcCCE
Confidence            9999995 55566663 33332 33456665433   2 57777777765554

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.31  E-value=0.0011  Score=64.57  Aligned_cols=106  Identities=15%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .++|+|||.|.+|..+|..|+ ..|. +|..||+..... +.......+.....+ .........++++.++.||+|+++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la-~~g~~~V~L~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~~ea~~~aDiVi~a   85 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMP-EGKALDLSHVTSVVD-TNVSVRAEYSYEAALTGADCVIVT   85 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHH-HHHHHHHHHHHHHTT-CCCCEEEECSHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECChhHH-HHHHHHHHhhhhccC-CCCEEEEeCCHHHHhCCCCEEEEc
Confidence            358999999999999999985 4465 899999986432 211111111111111 112222236888889999999999


Q ss_pred             C--CCChhh------hh-c-------cc--HHHHhcCCCCcEEEEcCC
Q 016162          244 P--VLDKTT------YH-L-------IN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 l--Plt~~t------~~-l-------i~--~~~l~~mk~gailIN~aR  273 (394)
                      .  |..+..      +- +       +.  .+.+....|++++++++.
T Consensus        86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  133 (331)
T 1pzg_A           86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  133 (331)
T ss_dssp             CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            8  654422      10 0       10  112223348899998865

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.29  E-value=0.00096  Score=64.52  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=66.4

Q ss_pred             CeEEEEecChHHHHHHHHHH-hcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMV-EGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (394)
                      .+|||||+|.||+..++.++ +.-++++ .++|+++... +.+.+.|       +..    ..+.++++++.  ++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~-~~~a~~~-------g~~----~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQL-EWAKNEL-------GVE----TTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHH-HHHHHTT-------CCS----EEESCHHHHHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHHHh-------CCC----cccCCHHHHhcCCCCCEEE
Confidence            48999999999999999874 3347875 5789887542 2222221       210    23468999986  699999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcC-Ccc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQN-PMF  292 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g-~l~  292 (394)
                      +|+|.....     +-....++.|. +++.- ..-.+-+.++|.++.++. .+.
T Consensus        77 i~tp~~~h~-----~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           77 IVAPTPFHP-----EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ECSCGGGHH-----HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             EeCChHhHH-----HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence            999943221     11223345565 44431 112233445577777766 544

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.27  E-value=0.00044  Score=66.44  Aligned_cols=121  Identities=15%  Similarity=0.133  Sum_probs=67.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++|+|||.|.+|..+|..+ ...|.  +|..+|+..... +.....+    .+...  ....... .+. +.++.||+|+
T Consensus         1 mkI~VIGaG~vG~~la~~l-a~~g~~~eV~L~D~~~~~~-~~~~~~l----~~~~~~~~~~~i~~-~~~-~a~~~aDvVI   72 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFAL-VLRGSCSELVLVDRDEDRA-QAEAEDI----AHAAPVSHGTRVWH-GGH-SELADAQVVI   72 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSSHHHH-HHHHHHH----TTSCCTTSCCEEEE-ECG-GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCCHHHH-HHHHHhh----hhhhhhcCCeEEEE-CCH-HHhCCCCEEE
Confidence            4899999999999999987 45577  999999986432 2111111    11110  0111111 343 5689999999


Q ss_pred             EcCCCChh-----------hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          242 LHPVLDKT-----------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       242 l~lPlt~~-----------t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      ++++....           +..++.  .+.+....|++++++++.+.-+....+.+.....++.|.
T Consensus        73 i~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           73 LTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             ECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             EcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            99953221           111111  122333358999999876544444444444444455444

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.27  E-value=0.00037  Score=66.89  Aligned_cols=104  Identities=13%  Similarity=0.131  Sum_probs=61.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|||||+|+||+.+++.+++.-++++. ++|+++... +           ..|.   .+..+.++.+. .++|+|++|+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~-~-----------~~g~---~~~~~~~l~~~-~~~DvViiat   73 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV-P-----------FELQ---PFRVVSDIEQL-ESVDVALVCS   73 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------------------CCT---TSCEESSGGGS-SSCCEEEECS
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHH-H-----------HcCC---CcCCHHHHHhC-CCCCEEEECC
Confidence            4899999999999999987444578887 689876532 1           1121   11223455554 7899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC--C-cccCHHHHHHHHHcCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSR--G-PVIDEVALVEHLKQNP  290 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aR--G-~~vde~aL~~aL~~g~  290 (394)
                      |.  .+..   +-....++.|.-+++..-  + .+.+.+.|.++.++..
T Consensus        74 p~--~~h~---~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           74 PS--REVE---RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             CH--HHHH---HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             Cc--hhhH---HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            93  2221   222344566777776431  2 2334466777766644

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.27  E-value=0.001  Score=63.90  Aligned_cols=107  Identities=15%  Similarity=0.220  Sum_probs=64.4

Q ss_pred             eEEEEecChHHHHH-HHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          167 TVGVIGAGRIGSAY-ARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       167 tvGIIGlG~IG~~v-A~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      +|||||+|.||+.+ ++.+++ -+.+++ ++|++.... +++.+.|       +..    ..+.+++++++  ++|+|++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~-~~~~~~~-------g~~----~~~~~~~~~l~~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERG-AAYATEN-------GIG----KSVTSVEELVGDPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHH-HHHHHHT-------TCS----CCBSCHHHHHTCTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHH-HHHHHHc-------CCC----cccCCHHHHhcCCCCCEEEE
Confidence            79999999999998 777655 778865 789887543 2222222       211    12468999987  4999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~l  291 (394)
                      ++|......     -....++.|. +++.- ....+-+.+.|.++.++..+
T Consensus        69 ~tp~~~h~~-----~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~  114 (332)
T 2glx_A           69 STTNELHRE-----QTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV  114 (332)
T ss_dssp             CSCGGGHHH-----HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             eCChhHhHH-----HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence            999332211     1122344555 44432 12233444566666655433

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.25  E-value=0.00061  Score=62.68  Aligned_cols=98  Identities=22%  Similarity=0.234  Sum_probs=63.9

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      ..-++.|+++.|||.|.+|...++.| ...|++|+++++..........+        .+........+ + ++.+..+|
T Consensus        25 ifl~L~gk~VLVVGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~--------~~~i~~i~~~~-~-~~dL~~ad   93 (223)
T 3dfz_A           25 VMLDLKGRSVLVVGGGTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEA--------KGQLRVKRKKV-G-EEDLLNVF   93 (223)
T ss_dssp             EEECCTTCCEEEECCSHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHH--------TTSCEEECSCC-C-GGGSSSCS
T ss_pred             cEEEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHH--------cCCcEEEECCC-C-HhHhCCCC
Confidence            44689999999999999999999998 68899999999987654443221        12111111111 2 34578899


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+.++. +++    +|.......+ -.++||++.
T Consensus        94 LVIaAT~-d~~----~N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A           94 FIVVATN-DQA----VNKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             EEEECCC-CTH----HHHHHHHHSC-TTCEEEC--
T ss_pred             EEEECCC-CHH----HHHHHHHHHh-CCCEEEEeC
Confidence            9998865 333    2444444455 557888754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.23  E-value=0.0016  Score=62.50  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.||..+|..|+ ..|  .+|+.||++.... +.....+.+.....+ ...... ..++ +.++.||+|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~-~~g~~~~V~l~d~~~~~~-~~~~~~l~~~~~~~~-~~~~~~-~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLI-AQGVADDYVFIDANEAKV-KADQIDFQDAMANLE-AHGNIV-INDW-AALADADVVIST   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSS-SCCEEE-ESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEcCCHHHH-HHHHHHHHhhhhhcC-CCeEEE-eCCH-HHhCCCCEEEEe
Confidence            48999999999999999885 446  6999999986532 221111111110000 011111 2466 678999999999


Q ss_pred             CCC
Q 016162          244 PVL  246 (394)
Q Consensus       244 lPl  246 (394)
                      +|.
T Consensus        77 v~~   79 (309)
T 1hyh_A           77 LGN   79 (309)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            985

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.00073  Score=67.25  Aligned_cols=105  Identities=15%  Similarity=0.269  Sum_probs=66.9

Q ss_pred             eEEEEecChHHHHHHHHHHhc-------CCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-------CCCccccccCCHHH
Q 016162          167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYYDLYQATRLEKFVTAYGQFLKANG-------EQPVTWKRASSMDE  232 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~-------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~e  232 (394)
                      +|+|||.|.-|.++|..|++.       ++.+|..|.|..+...+...+.+..  .+.+       ..+.......|+++
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~--~~~N~~YLpgv~Lp~~i~~t~dl~~  113 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINT--RHQNVKYLPGITLPDNLVANPDLID  113 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTT--TCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHh--cCcCcccCCCCcCCCCcEEeCCHHH
Confidence            899999999999999988542       2346888876643211111111100  0001       11222233468999


Q ss_pred             HhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       233 ll~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      .++.||+|++++| +...+.++ ++.-..++++..+|+++-|=
T Consensus       114 al~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          114 SVKDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             HHTTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             HHhcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEecccc
Confidence            9999999999999 34444444 34455678999999999874

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.23  E-value=0.00069  Score=57.86  Aligned_cols=103  Identities=10%  Similarity=0.089  Sum_probs=69.0

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      -++|+|||.    |++|..+++.| +..|.+|+..+|....                 ..  +...+.+++|+....|++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l-~~~G~~v~~Vnp~~~~-----------------i~--G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-----------------VL--GRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-----------------ET--TEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHH-HHCCCEEEEECCCCCe-----------------EC--CeeccCCHHHcCCCCCEE
Confidence            679999999    79999999998 6788887777765311                 01  122356888888889999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      ++++|. +....++. +..+ ...+.++++.  |.  .++++.+++++..+.-.
T Consensus        82 vi~vp~-~~~~~vv~-~~~~-~gi~~i~~~~--g~--~~~~l~~~a~~~Gi~vv  128 (144)
T 2d59_A           82 DLFVKP-KLTMEYVE-QAIK-KGAKVVWFQY--NT--YNREASKKADEAGLIIV  128 (144)
T ss_dssp             EECSCH-HHHHHHHH-HHHH-HTCSEEEECT--TC--CCHHHHHHHHHTTCEEE
T ss_pred             EEEeCH-HHHHHHHH-HHHH-cCCCEEEECC--Cc--hHHHHHHHHHHcCCEEE
Confidence            999994 45555553 3333 2234555543  22  36777887777655533

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.22  E-value=0.00072  Score=64.20  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++.|+++.|+|.|.||+++|+.| ...| +|++++|+..+. ++..+.+.....  ....... ...++.+.+.++|+|+
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L-~~~G-~V~v~~r~~~~~-~~l~~~~~~~~~--~~~~~~~-d~~~~~~~~~~~DilV  198 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAEKLN--KKFGEEV-KFSGLDVDLDGVDIII  198 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHHHHT--CCHHHHE-EEECTTCCCTTCCEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCC-CEEEEECCHHHH-HHHHHHHhhhcc--cccceeE-EEeeHHHhhCCCCEEE
Confidence            57899999999999999999998 5889 999999987542 222222211000  0000000 1122345578899999


Q ss_pred             EcCCCChhhh---hcccHHHHhcCCCCcEEEEcCCC
Q 016162          242 LHPVLDKTTY---HLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       242 l~lPlt~~t~---~li~~~~l~~mk~gailIN~aRG  274 (394)
                      .++|......   ..+.  ..+.++++.+++|+...
T Consensus       199 n~ag~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          199 NATPIGMYPNIDVEPIV--KAEKLREDMVVMDLIYN  232 (287)
T ss_dssp             ECSCTTCTTCCSSCCSS--CSTTCCSSSEEEECCCS
T ss_pred             ECCCCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeC
Confidence            9998543210   0120  13457888999998864

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.21  E-value=0.0012  Score=63.71  Aligned_cols=70  Identities=13%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      .++||||+|.||+..++.+++.-+.++. ++|++.... +++.+.|       +.   . ..+.++++++.  +.|+|++
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~-~~~a~~~-------~~---~-~~~~~~~~ll~~~~~D~V~i   73 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESA-QAFANKY-------HL---P-KAYDKLEDMLADESIDVIYV   73 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTT-CC---CC-------CC---S-CEESCHHHHHTCTTCCEEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHHHHc-------CC---C-cccCCHHHHhcCCCCCEEEE
Confidence            5899999999999999887443466655 678876542 1111111       11   0 13579999998  7999999


Q ss_pred             cCCCC
Q 016162          243 HPVLD  247 (394)
Q Consensus       243 ~lPlt  247 (394)
                      ++|..
T Consensus        74 ~tp~~   78 (329)
T 3evn_A           74 ATINQ   78 (329)
T ss_dssp             CSCGG
T ss_pred             CCCcH
Confidence            99943

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.20  E-value=0.0014  Score=63.90  Aligned_cols=70  Identities=26%  Similarity=0.387  Sum_probs=51.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh--cccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDiV~  241 (394)
                      .+|||||+|.||+..++.+ +.. +++++ ++|++.... +.+.+.|       +.     ..+.++++++  .+.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~lvav~d~~~~~~-~~~~~~~-------g~-----~~~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAY-TKSEKLKLVTCYSRTEDKR-EKFGKRY-------NC-----AGDATMEALLAREDVEMVI   71 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEECSSHHHH-HHHHHHH-------TC-----CCCSSHHHHHHCSSCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHH-HhCCCcEEEEEECCCHHHH-HHHHHHc-------CC-----CCcCCHHHHhcCCCCCEEE
Confidence            4899999999999999987 555 88865 779887543 2222222       21     2357999999  5699999


Q ss_pred             EcCCCChh
Q 016162          242 LHPVLDKT  249 (394)
Q Consensus       242 l~lPlt~~  249 (394)
                      +|+|....
T Consensus        72 i~tp~~~h   79 (354)
T 3db2_A           72 ITVPNDKH   79 (354)
T ss_dssp             ECSCTTSH
T ss_pred             EeCChHHH
Confidence            99995443

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.20  E-value=0.0013  Score=63.13  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=64.2

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEEEEc
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~  243 (394)
                      .+|||||+|.||+. +++.+++.-+.+++++|++.... +++.+.|       +...    .+.+..+++ .++|+|++|
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~-~~~a~~~-------g~~~----~~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVSA----TCTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCCC----CCSSTTGGGGGCCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHc-------CCCc----cccCHHHHhhcCCCEEEEE
Confidence            37999999999994 88887332377888999987643 2222222       2110    022334455 789999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 016162          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +|......     -....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        71 tp~~~h~~-----~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           71 AATDVHST-----LAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             SCGGGHHH-----HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCchhHHH-----HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            99322211     1122344454 56652 122334556788877766544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.20  E-value=0.0015  Score=63.01  Aligned_cols=70  Identities=11%  Similarity=0.136  Sum_probs=50.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      .+|||||+|.||+..++.+++.-++++. ++|++.... +.+.+.|       +..    ..+.++++++.  +.|+|++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENA-QKMAKEL-------AIP----VAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHH-HHHHHHT-------TCC----CCBSSHHHHHHCTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHc-------CCC----ceeCCHHHHhcCCCCCEEEE
Confidence            5899999999999999988433477876 678886542 2222222       211    23578999998  7999999


Q ss_pred             cCCCC
Q 016162          243 HPVLD  247 (394)
Q Consensus       243 ~lPlt  247 (394)
                      |+|..
T Consensus        74 ~tp~~   78 (330)
T 3e9m_A           74 PTYNQ   78 (330)
T ss_dssp             CCCGG
T ss_pred             cCCCH
Confidence            99944

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.11  E-value=0.0025  Score=61.74  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      .+|||||+|.||+..++.+++.-+++++ ++|+++... +.+.+.|       +.    ...+.++++++.  ++|+|++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~----~~~~~~~~~ll~~~~~D~V~i   70 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRL-REMKEKL-------GV----EKAYKDPHELIEDPNVDAVLV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHH-HHHHHHH-------TC----SEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHh-------CC----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433477876 689887543 2222222       11    113579999998  8999999


Q ss_pred             cCCCC
Q 016162          243 HPVLD  247 (394)
Q Consensus       243 ~lPlt  247 (394)
                      |+|..
T Consensus        71 ~tp~~   75 (344)
T 3ezy_A           71 CSSTN   75 (344)
T ss_dssp             CSCGG
T ss_pred             cCCCc
Confidence            99943

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.10  E-value=0.00013  Score=69.63  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=62.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~l  244 (394)
                      ++|+|||.|.||..+|..|+ ..|.+|.+++|+.... +.        ....|..+...  ..+..+.+ ..+|+|++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~-~~g~~V~~~~r~~~~~-~~--------~~~~g~~~~~~--~~~~~~~~~~~~D~vilav   70 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQ-QSLPHTTLIGRHAKTI-TY--------YTVPHAPAQDI--VVKGYEDVTNTFDVIIIAV   70 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HHCTTCEEEESSCEEE-EE--------ESSTTSCCEEE--EEEEGGGCCSCEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeccCcE-EE--------EecCCeeccce--ecCchHhcCCCCCEEEEeC
Confidence            58999999999999999984 5578899999975321 00        01112111111  11333444 7899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  277 (394)
                      |.. .+...+ +..-..+++++++|.+.-|=-.
T Consensus        71 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           71 KTH-QLDAVI-PHLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             CGG-GHHHHG-GGHHHHEEEEEEEEECCSSCCC
T ss_pred             Ccc-CHHHHH-HHHHHhhCCCCEEEEeccCccc
Confidence            943 444444 2333446778899998887543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.09  E-value=0.0018  Score=63.06  Aligned_cols=71  Identities=14%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCE
Q 016162          164 KGQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~-~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (394)
                      .-.+|||||+|.||+ .+++.+++.-+++|. ++|++.... +.+.+.|       +     ...+.+++++++  +.|+
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~~ll~~~~~D~   92 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRA-KRFTERF-------G-----GEPVEGYPALLERDDVDA   92 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHH-HHHHHHH-------C-----SEEEESHHHHHTCTTCSE
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CCCcCCHHHHhcCCCCCE
Confidence            346899999999999 788887433378876 778886542 2233333       2     123478999997  5899


Q ss_pred             EEEcCCCC
Q 016162          240 ISLHPVLD  247 (394)
Q Consensus       240 V~l~lPlt  247 (394)
                      |++|+|..
T Consensus        93 V~i~tp~~  100 (350)
T 3rc1_A           93 VYVPLPAV  100 (350)
T ss_dssp             EEECCCGG
T ss_pred             EEECCCcH
Confidence            99999944

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.07  E-value=0.0015  Score=58.96  Aligned_cols=96  Identities=15%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHH-hcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV~  241 (394)
                      +++.|+|+|.+|+.+|+.| ...|.+|+++|+++.... ...+.       .+.. .......+   +++. +.++|+|+
T Consensus         1 M~iiIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~~-~l~~~-------~~~~-~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSM-LSRKYGVVIINKDRELCE-EFAKK-------LKAT-IIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHH-HHTTCCEEEEESCHHHHH-HHHHH-------SSSE-EEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HHHHH-------cCCe-EEEcCCCCHHHHHhcCcccCCEEE
Confidence            3799999999999999998 678999999999876422 11111       1110 00011122   3443 67899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +++|.+..+  ++-......+.+...+|-..+
T Consensus        71 ~~~~~d~~n--~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           71 ILTPRDEVN--LFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             ECCSCHHHH--HHHHHHHHHTSCCCEEEECCC
T ss_pred             EecCCcHHH--HHHHHHHHHHcCCCeEEEEEe
Confidence            999854333  222333443334445554443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.05  E-value=0.0026  Score=62.36  Aligned_cols=105  Identities=10%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (394)
                      .+|||||+|.||+. .++.+ +.. +++|. ++|++.....+    .+       +    +...+.++++++.  +.|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~~----~~-------~----~~~~~~~~~~ll~~~~~D~V   71 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLI-RSVPGLNLAFVASRDEEKVKR----DL-------P----DVTVIASPEAAVQHPDVDLV   71 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHHH----HC-------T----TSEEESCHHHHHTCTTCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHHh----hC-------C----CCcEECCHHHHhcCCCCCEE
Confidence            47999999999997 67766 444 78875 77888754221    11       1    1223579999998  78999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHcCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~a--RG~~vde~aL~~aL~~g~l  291 (394)
                      ++|+|.......     ....++.|.-++.--  --.+-+.++|+++.++..+
T Consensus        72 ~i~tp~~~H~~~-----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  119 (364)
T 3e82_A           72 VIASPNATHAPL-----ARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQR  119 (364)
T ss_dssp             EECSCGGGHHHH-----HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred             EEeCChHHHHHH-----HHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCC
Confidence            999994333221     122233343333221  2233445556666555443

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.04  E-value=0.0014  Score=63.37  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.||..+|..++ ..|.  +|+.+|+..... +.....+.+.+. .. ....... .+ .+.++.||+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~-~~g~~~~V~l~D~~~~~~-~~~~~~l~~~~~-~~-~~~~i~~-~d-~~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALL-MKGFAREMVLIDVDKKRA-EGDALDLIHGTP-FT-RRANIYA-GD-YADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGG-GS-CCCEEEE-CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHHHHHhhhh-hc-CCcEEEe-CC-HHHhCCCCEEEEc
Confidence            47999999999999999874 5566  999999986432 221111111010 00 0111111 34 3567999999999


Q ss_pred             CCCChh---hh--------hcccHHH---HhcCCCCcEEEEcCCCc
Q 016162          244 PVLDKT---TY--------HLINKER---LATMKKEAILVNCSRGP  275 (394)
Q Consensus       244 lPlt~~---t~--------~li~~~~---l~~mk~gailIN~aRG~  275 (394)
                      +|....   ++        .++ .+.   +....|++++|+++.+.
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~  119 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPV  119 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcH
Confidence            985331   00        111 222   22224788998886644

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.04  E-value=0.0042  Score=60.56  Aligned_cols=114  Identities=17%  Similarity=0.123  Sum_probs=68.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      .+|||||+|.||+..++.++..-++++ .++|++.... +.+.+.|       +... ....+.+++++++  +.|+|++
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~-~~~a~~~-------~~~~-~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATAN-------NYPE-STKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------TCCT-TCEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CCCC-CCeeeCCHHHHhcCCCCCEEEE
Confidence            489999999999999988743346776 4788877542 2222222       2100 1123568999996  5999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcce
Q 016162          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMFR  293 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~l~g  293 (394)
                      |+|.....     +-....++.|. +++.- ---.+-+.++|.++.++..+..
T Consensus        78 ~tp~~~h~-----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~  125 (362)
T 1ydw_A           78 PLPTSLHV-----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  125 (362)
T ss_dssp             CCCGGGHH-----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             cCChHHHH-----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEE
Confidence            99933221     12223455665 44432 1223345577888887765443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.99  E-value=0.002  Score=65.22  Aligned_cols=116  Identities=13%  Similarity=0.166  Sum_probs=72.0

Q ss_pred             CCCeEEEEecChH--HHHHHHHHHh--c-CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          164 KGQTVGVIGAGRI--GSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       164 ~gktvGIIGlG~I--G~~vA~~la~--~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +..+|+|||.|.+  |..++..+++  . .| +|+.||+..... +.. ....+.+..   .........++++.++.||
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~l-e~~-~~~~~~l~~---~~~~I~~TtD~~eAl~dAD   77 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAA-QKN-EVIGNHSGN---GRWRYEAVSTLKKALSAAD   77 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHH-HHH-HHHHTTSTT---SCEEEEEESSHHHHHTTCS
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHH-HHH-HHHHHHHhc---cCCeEEEECCHHHHhcCCC
Confidence            4569999999998  5788877643  2 36 999999987542 111 111111111   2333444578999999999


Q ss_pred             EEEEcCCCC-----------hhhhhcccH------------------------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162          239 VISLHPVLD-----------KTTYHLINK------------------------ERLATMKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       239 iV~l~lPlt-----------~~t~~li~~------------------------~~l~~mk~gailIN~aRG~~vde~aL~  283 (394)
                      +|+++++-.           |.-.++...                        +.+....|++++||++..--+-+.++.
T Consensus        78 fVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~  157 (450)
T 3fef_A           78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLY  157 (450)
T ss_dssp             EEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHH
T ss_pred             EEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHH
Confidence            999999632           223333211                        223334589999999885544444444


Q ss_pred             HH
Q 016162          284 EH  285 (394)
Q Consensus       284 ~a  285 (394)
                      +.
T Consensus       158 k~  159 (450)
T 3fef_A          158 KV  159 (450)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.99  E-value=0.0024  Score=61.88  Aligned_cols=79  Identities=14%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||.|.+|..+|..++ ..|. +|..+|...... +.......+.+.... .........++ +.++.||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la-~~g~~~v~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIV-QKNLGDVVLFDIVKNMP-HGKALDTSHTNVMAY-SNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHTHHHHHT-CCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCHHHH-HHHHHHHHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEeC
Confidence            58999999999999999885 4466 899999876432 211111111111111 11122223566 6799999999998


Q ss_pred             --CCCh
Q 016162          245 --VLDK  248 (394)
Q Consensus       245 --Plt~  248 (394)
                        |..+
T Consensus        81 g~p~k~   86 (322)
T 1t2d_A           81 GFTKAP   86 (322)
T ss_dssp             SCSSCT
T ss_pred             CCCCCC
Confidence              5443

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.97  E-value=0.0026  Score=61.67  Aligned_cols=104  Identities=16%  Similarity=0.309  Sum_probs=60.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||.|.+|..+|..++ ..|. +|..||+...... .......+...... .........++ +.++.||+|++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la-~~g~~~V~L~Di~~~~l~-~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLG-QKDLGDVYMFDIIEGVPQ-GKALDLNHCMALIG-SPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSTTHHH-HHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECCHHHHH-HHHHHHHhHhhccC-CCCEEEECCCH-HHHCCCCEEEEcC
Confidence            68999999999999999874 5576 8999999865422 11111111111111 11122223566 6789999999998


Q ss_pred             --CCChh---------hhhccc--HHHHhcCCCCcEEEEcCC
Q 016162          245 --VLDKT---------TYHLIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 --Plt~~---------t~~li~--~~~l~~mk~gailIN~aR  273 (394)
                        |..+.         +..++.  .+.+....|++++++++.
T Consensus        91 g~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           91 GVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             SCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              54222         111111  112222248889988765

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0014  Score=66.67  Aligned_cols=101  Identities=16%  Similarity=0.214  Sum_probs=58.5

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC--ccccccCCHHHHhcc
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLRE  236 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~  236 (394)
                      .+..+.+++|+|+|.|.+|+.+++.|++.-|.+|++++|+..+.. +..+.       .+...  .......++.++++.
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~-~la~~-------~~~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQ-ALAKP-------SGSKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHH-HHHGG-------GTCEEEECCTTCHHHHHHHHHT
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHH-HHHHh-------cCCcEEEEecCCHHHHHHHHcC
Confidence            446788999999999999999999985333789999999875421 11110       11100  001111246677889


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|+|+.|+|..-.. . +..   +.+++|..+++++
T Consensus        89 ~DvVIn~tp~~~~~-~-v~~---a~l~~g~~vvd~~  119 (467)
T 2axq_A           89 NDVVISLIPYTFHP-N-VVK---SAIRTKTDVVTSS  119 (467)
T ss_dssp             SSEEEECSCGGGHH-H-HHH---HHHHHTCEEEECS
T ss_pred             CCEEEECCchhhhH-H-HHH---HHHhcCCEEEEee
Confidence            99999999943211 1 111   2234566666654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.94  E-value=0.0014  Score=62.87  Aligned_cols=115  Identities=15%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|+|||.|.||..+|..| . -|.+|.+++|+.... +...+ .+-.....+..  .......-++....+|+|++++|
T Consensus         3 mkI~IiGaGa~G~~~a~~L-~-~g~~V~~~~r~~~~~-~~l~~-~G~~~~~~~~~--~~~~~~~~~~~~~~~D~vilavK   76 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYL-S-LYHDVTVVTRRQEQA-AAIQS-EGIRLYKGGEE--FRADCSADTSINSDFDLLVVTVK   76 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHH-HHHHH-HCEEEEETTEE--EEECCEEESSCCSCCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHH-h-cCCceEEEECCHHHH-HHHHh-CCceEecCCCe--ecccccccccccCCCCEEEEEeC
Confidence            5899999999999999998 5 789999999986432 11111 11000000000  00000000234678999999998


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      . ..+...+  +.++.+.+++ +|.+.-|=- .++.|.+.+-..++
T Consensus        77 ~-~~~~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~v  117 (307)
T 3ego_A           77 Q-HQLQSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSI  117 (307)
T ss_dssp             G-GGHHHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEE
T ss_pred             H-HHHHHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcE
Confidence            3 2344433  3344445666 888877643 23344443333333

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.92  E-value=0.0013  Score=64.58  Aligned_cols=72  Identities=21%  Similarity=0.226  Sum_probs=47.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .++|+|+|.|.+|+.+|+.|+ . ..+|.++|+..... ++. ...   ...   .........++.++++++|+|+.|+
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~-~-~~~v~~~~~~~~~~-~~~-~~~---~~~---~~~d~~d~~~l~~~~~~~DvVi~~~   85 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLK-D-EFDVYIGDVNNENL-EKV-KEF---ATP---LKVDASNFDKLVEVMKEFELVIGAL   85 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHT-T-TSEEEEEESCHHHH-HHH-TTT---SEE---EECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ccEEEEECCCHHHHHHHHHHh-c-CCCeEEEEcCHHHH-HHH-hcc---CCc---EEEecCCHHHHHHHHhCCCEEEEec
Confidence            347999999999999999974 3 46888899876542 211 100   000   0011112235778899999999999


Q ss_pred             CC
Q 016162          245 VL  246 (394)
Q Consensus       245 Pl  246 (394)
                      |.
T Consensus        86 p~   87 (365)
T 3abi_A           86 PG   87 (365)
T ss_dssp             CG
T ss_pred             CC
Confidence            94

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.92  E-value=0.0028  Score=61.10  Aligned_cols=105  Identities=16%  Similarity=0.239  Sum_probs=59.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -++|+|||.|.||.++|..++. ++.-+|+.+|+.... .+.......+.....+ ......  .+..+.++.||+|+++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~-~~~~~~dl~~~~~~~~-~~~~i~--~~~~~al~~aDvViia   81 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK-AIGDAMDFNHGKVFAP-KPVDIW--HGDYDDCRDADLVVIC   81 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHHHHHHHHHHTTSSS-SCCEEE--ECCGGGTTTCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcch-HHHHHhhHHHHhhhcC-CCeEEE--cCcHHHhCCCCEEEEc
Confidence            3699999999999999988743 233489999998652 2221111111100000 011111  2334668999999999


Q ss_pred             CCCChh-----------hhhccc--HHHHhcCCCCcEEEEcCC
Q 016162          244 PVLDKT-----------TYHLIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt~~-----------t~~li~--~~~l~~mk~gailIN~aR  273 (394)
                      .|....           +..++.  .+.+....|++++++++.
T Consensus        82 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            764321           001110  112222357888999855

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.88  E-value=0.0016  Score=63.64  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=49.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (394)
                      .+|||||+|.||+..++.+ +.. ++++. ++|++.....  ..+.|       +     ...+.++++++.  +.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~l~av~d~~~~~~~--~a~~~-------g-----~~~~~~~~~ll~~~~~D~V~   70 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLA-SAADNLEVHGVFDILAEKRE--AAAQK-------G-----LKIYESYEAVLADEKVDAVL   70 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTSTTEEEEEEECSSHHHHH--HHHTT-------T-----CCBCSCHHHHHHCTTCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHH-HhCCCcEEEEEEcCCHHHHH--HHHhc-------C-----CceeCCHHHHhcCCCCCEEE
Confidence            5899999999999999987 455 78876 5788875431  11111       2     124579999997  789999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +|+|..
T Consensus        71 i~tp~~   76 (359)
T 3e18_A           71 IATPND   76 (359)
T ss_dssp             ECSCGG
T ss_pred             EcCCcH
Confidence            999943

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.86  E-value=0.0014  Score=63.31  Aligned_cols=103  Identities=15%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|||||+|+||+.+++.+.+.-++++ .++|++....           +   +   .+...+.++++++.++|+|++|+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-----------~---~---~gv~~~~d~~~ll~~~DvViiat   66 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----------T---K---TPVFDVADVDKHADDVDVLFLCM   66 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----------S---S---SCEEEGGGGGGTTTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-----------h---c---CCCceeCCHHHHhcCCCEEEEcC
Confidence            379999999999999998743336775 4778764321           0   0   11222457778888899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-c-CH-HHHHHHHHcCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV-I-DE-VALVEHLKQNP  290 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~-v-de-~aL~~aL~~g~  290 (394)
                      |.....     +.....++.|.-++...-..+ + +. +.|.++.+++.
T Consensus        67 p~~~h~-----~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           67 GSATDI-----PEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             CTTTHH-----HHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CcHHHH-----HHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            843321     223345566776666544332 2 22 45666666543

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.86  E-value=0.0026  Score=61.60  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             CeEEEEecChHHHHHHHHHH-hcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (394)
                      .+|||||+|.||+..++.++ +.-++++. ++|++.... +.+.+.|       +.   ....+.++++++.+  .|+|+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~-~~~~~~~-------g~---~~~~~~~~~~ll~~~~~D~V~   71 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAA-QKVVEQY-------QL---NATVYPNDDSLLADENVDAVL   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHH-HHHHHHT-------TC---CCEEESSHHHHHHCTTCCEEE
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEEE
Confidence            37999999999999999874 23478866 688887542 2222222       21   12245799999986  99999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +|+|..
T Consensus        72 i~tp~~   77 (344)
T 3mz0_A           72 VTSWGP   77 (344)
T ss_dssp             ECSCGG
T ss_pred             ECCCch
Confidence            999943

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.85  E-value=0.0054  Score=59.09  Aligned_cols=69  Identities=13%  Similarity=0.190  Sum_probs=48.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC---cEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK---MNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G---~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (394)
                      .++||||+|.||+..++.+ +..+   +++ .++|++.... +++.+.|       +..    ..+.++++++.  +.|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l-~~~~~~~~~l~av~d~~~~~a-~~~a~~~-------~~~----~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVL-QTLPRSEHQVVAVAARDLSRA-KEFAQKH-------DIP----KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTSCTTTEEEEEEECSSHHHH-HHHHHHH-------TCS----CEESSHHHHHHCTTCCE
T ss_pred             cEEEEECchHHHHHHHHHH-HhCCCCCeEEEEEEcCCHHHH-HHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            4899999999999999887 4443   454 4678876542 3333333       211    13579999997  6999


Q ss_pred             EEEcCCCC
Q 016162          240 ISLHPVLD  247 (394)
Q Consensus       240 V~l~lPlt  247 (394)
                      |++++|..
T Consensus        70 V~i~tp~~   77 (334)
T 3ohs_X           70 AYVGTQHP   77 (334)
T ss_dssp             EEECCCGG
T ss_pred             EEECCCcH
Confidence            99999943

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.85  E-value=0.0025  Score=65.06  Aligned_cols=128  Identities=11%  Similarity=0.222  Sum_probs=76.0

Q ss_pred             CCeEEEEecChHH--HHHHHHHHh--cC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          165 GQTVGVIGAGRIG--SAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       165 gktvGIIGlG~IG--~~vA~~la~--~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .++|+|||.|.+|  .++|..+++  ++ |.+|..||+..... +...+.....+... ..........++++.++.||+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l-~~~~~~~~~~l~~~-~~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERL-DAILTIAKKYVEEV-GADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHH-HHHHHHHHHHHHHT-TCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHH-HHHHHHHHHHhccC-CCCcEEEEECCHHHHhCCCCE
Confidence            4689999999975  555666542  44 88999999987542 11111100001111 123333344688888999999


Q ss_pred             EEEcCCCCh-----------hhhhccc----------------------------HHHHhcCCCCcEEEEcCCCcccCHH
Q 016162          240 ISLHPVLDK-----------TTYHLIN----------------------------KERLATMKKEAILVNCSRGPVIDEV  280 (394)
Q Consensus       240 V~l~lPlt~-----------~t~~li~----------------------------~~~l~~mk~gailIN~aRG~~vde~  280 (394)
                      |++++|...           .-.+++.                            .+.+....|++++||++..--+-+.
T Consensus        81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~  160 (480)
T 1obb_A           81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT  160 (480)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred             EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence            999997410           0011111                            1233334689999999886655556


Q ss_pred             HHHHHHHcCCcceEE
Q 016162          281 ALVEHLKQNPMFRVG  295 (394)
Q Consensus       281 aL~~aL~~g~l~gaa  295 (394)
                      ++.+ +...++.|.+
T Consensus       161 ~~~k-~p~~rviG~c  174 (480)
T 1obb_A          161 LVTR-TVPIKAVGFC  174 (480)
T ss_dssp             HHHH-HSCSEEEEEC
T ss_pred             HHHH-CCCCcEEecC
Confidence            6655 5555666664

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.78  E-value=0.0038  Score=60.67  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (394)
                      .+|||||+|.||+. .++.+ +.. ++++. ++|+++....+    .+       +    +...+.++++++..  .|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~-~~~~~~~l~av~d~~~~~~~~----~~-------~----~~~~~~~~~~ll~~~~vD~V   71 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLI-MGTPGLELAGVSSSDASKVHA----DW-------P----AIPVVSDPQMLFNDPSIDLI   71 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHHT----TC-------S----SCCEESCHHHHHHCSSCCEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCcEEEEEECCCHHHHHh----hC-------C----CCceECCHHHHhcCCCCCEE
Confidence            48999999999997 77776 444 77875 77887654211    11       1    12245799999976  8999


Q ss_pred             EEcCCCChh
Q 016162          241 SLHPVLDKT  249 (394)
Q Consensus       241 ~l~lPlt~~  249 (394)
                      ++|+|....
T Consensus        72 ~i~tp~~~H   80 (352)
T 3kux_A           72 VIPTPNDTH   80 (352)
T ss_dssp             EECSCTTTH
T ss_pred             EEeCChHHH
Confidence            999995543

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.78  E-value=0.24  Score=47.59  Aligned_cols=104  Identities=14%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH---HHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-...+..   .+++   ....|   ..+....+++|.++++
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~---a~~~g---~~~~~~~d~~eav~~a  224 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQN---AAESG---GSFELLHDPVKAVKDA  224 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHH---HHHHT---CEEEEESCHHHHTTTC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHH---HHHcC---CeEEEEeCHHHHhCCC
Confidence            478999999997 89999999886 689999999987542111111   1111   01112   1223357999999999


Q ss_pred             CEEEEcCC-C------Chh-----hhhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHPV-L------DKT-----TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~lP-l------t~~-----t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|..-.= .      .++     ...-++.+.++.+||+++|.-+.
T Consensus       225 Dvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          225 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             CEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            99977331 0      111     12456888888899999888874

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.77  E-value=0.0025  Score=62.29  Aligned_cols=67  Identities=10%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc--CEE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV  240 (394)
                      .+|||||+|.||+. .++.+ ... +.++. ++|+++... +.+.+.|       +.    ...+.++++++.+.  |+|
T Consensus         6 ~rigiIG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V   72 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSL-LQMQDIRIVAACDSDLERA-RRVHRFI-------SD----IPVLDNVPAMLNQVPLDAV   72 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTCTTEEEEEEECSSHHHH-GGGGGTS-------CS----CCEESSHHHHHHHSCCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-HhCCCcEEEEEEcCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCCCEE
Confidence            58999999999996 88887 444 78876 789987643 1111111       11    12357999999865  999


Q ss_pred             EEcCC
Q 016162          241 SLHPV  245 (394)
Q Consensus       241 ~l~lP  245 (394)
                      ++|+|
T Consensus        73 ~i~tp   77 (359)
T 3m2t_A           73 VMAGP   77 (359)
T ss_dssp             EECSC
T ss_pred             EEcCC
Confidence            99999

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.75  E-value=0.0026  Score=59.16  Aligned_cols=101  Identities=20%  Similarity=0.226  Sum_probs=64.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch-------------------hhHHHHHHHhhhhhhhhcC-C
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-------------------ATRLEKFVTAYGQFLKANG-E  219 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~-~  219 (394)
                      ..|.+++|.|||.|.+|..+|+.| ...|. ++.++|+..                   .+. +...+.    +...+ .
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~L-a~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka-~~~~~~----l~~~np~  100 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYL-ASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKV-ESARDA----LTRINPH  100 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHH-HHHHHH----HHHHCTT
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHH-HHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHH-HHHHHH----HHHHCCC
Confidence            468999999999999999999998 46676 899999876                   221 111111    11111 0


Q ss_pred             CCccc-c-cc--CCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          220 QPVTW-K-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       220 ~~~~~-~-~~--~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      ..+.. . ..  .++++++.++|+|+.+++ +.+++.++++.....   +..+|+.
T Consensus       101 ~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          101 IAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             SEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             cEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence            00100 0 01  135678899999999997 678888887665543   3445554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.74  E-value=0.0044  Score=62.07  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH---HHH-hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDiV  240 (394)
                      +.+|.|+|+|++|+.+|+.| ...|.+|++.|+++.....         ++..|...+ .....+.   +++ +.+||+|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L-~~~g~~vvvId~d~~~v~~---------~~~~g~~vi-~GDat~~~~L~~agi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLL-LSSGVKMVVLDHDPDHIET---------LRKFGMKVF-YGDATRMDLLESAGAAKAEVL   72 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEECCHHHHHH---------HHHTTCCCE-ESCTTCHHHHHHTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHHHH---------HHhCCCeEE-EcCCCCHHHHHhcCCCccCEE
Confidence            45799999999999999998 7889999999998765321         122232111 1122333   333 6789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +++++....+.  .-......+.|...+|--++
T Consensus        73 iv~~~~~~~n~--~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           73 INAIDDPQTNL--QLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             EECCSSHHHHH--HHHHHHHHHCTTCEEEEEES
T ss_pred             EECCCChHHHH--HHHHHHHHhCCCCeEEEEEC
Confidence            99998543333  22445555667756655444

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.73  E-value=0.0029  Score=63.61  Aligned_cols=112  Identities=11%  Similarity=0.108  Sum_probs=64.4

Q ss_pred             CeEEEEecChHHH-HHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEE
Q 016162          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~-~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (394)
                      .+|||||+|.||+ .+++.+++.-++++ .++|++.... +.+.+.|       +........+.++++++.  +.|+|+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~~~~~~~~~~~~~~ll~~~~vD~V~  155 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAVY  155 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CCCcccccccCCHHHHhcCCCCCEEE
Confidence            4899999999997 88888632236775 5789887542 2222222       211101113568899987  799999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~  290 (394)
                      +|+|......     -....++.|. +++.- ---.+-+.++|.++.++..
T Consensus       156 iatp~~~h~~-----~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g  201 (433)
T 1h6d_A          156 IILPNSLHAE-----FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAAN  201 (433)
T ss_dssp             ECSCGGGHHH-----HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHT
T ss_pred             EcCCchhHHH-----HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhC
Confidence            9999432221     1222344454 44442 1123334456676665543

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.73  E-value=0.0033  Score=58.80  Aligned_cols=99  Identities=19%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      -+..+|+++|+|+||+.+++.   . ++++ .+|+   .+               .+..  +.....|+++++.++|+|+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~---~k---------------~gel--gv~a~~d~d~lla~pD~VV   65 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD---RI---------------SKDI--PGVVRLDEFQVPSDVSTVV   65 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH---S-CCSEEEEEC---SS---------------CCCC--SSSEECSSCCCCTTCCEEE
T ss_pred             cccceEEEECcCHHHHHHHhc---C-CcEEEEEEe---cc---------------cccc--CceeeCCHHHHhhCCCEEE
Confidence            356799999999999999986   3 6654 4566   11               0111  1223467889988999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde---~aL~~aL~~g~  290 (394)
                      =|.+  ++   -+.+.....++.|.-+|-+|-|.+.|.   +.|.++.++|.
T Consensus        66 e~A~--~~---av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg  112 (253)
T 1j5p_A           66 ECAS--PE---AVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP  112 (253)
T ss_dssp             ECSC--HH---HHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred             ECCC--HH---HHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence            8875  22   233445566789999999999988887   55666666654

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.72  E-value=0.0015  Score=63.31  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=46.1

Q ss_pred             CeEEEEecChHHHH-HHH-HHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEE
Q 016162          166 QTVGVIGAGRIGSA-YAR-MMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~-~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (394)
                      .+|||||+|.||+. .++ .++..-++++. ++|+++... +. ...+       .    +...+.|+++++..  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~-~~~~-------~----~~~~~~~~~~ll~~~~~D~V   69 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQ-APIY-------S----HIHFTSDLDEVLNDPDVKLV   69 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-GG-SGGG-------T----TCEEESCTHHHHTCTTEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-HH-HHhc-------C----CCceECCHHHHhcCCCCCEE
Confidence            47999999999997 455 33223477876 788876542 11 1111       1    12235789999986  8999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      ++|+|..
T Consensus        70 ~i~tp~~   76 (345)
T 3f4l_A           70 VVCTHAD   76 (345)
T ss_dssp             EECSCGG
T ss_pred             EEcCChH
Confidence            9999944

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.72  E-value=0.014  Score=58.71  Aligned_cols=116  Identities=16%  Similarity=0.251  Sum_probs=72.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCc---------hhhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .+++|+||.|.|+|++|+.+|+.| ...|++|+ +.|.+         ....+.+..+..+      ...........+.
T Consensus       231 ~~l~g~~vaVqGfGnVG~~~a~~L-~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~i~~y~~a~~i~~  303 (440)
T 3aog_A          231 LQVEGARVAIQGFGNVGNAAARAF-HDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFG------GVRGYPKAEPLPA  303 (440)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTS------SSTTCTTSEECCH
T ss_pred             CCccCCEEEEeccCHHHHHHHHHH-HHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcC------CcccCCCceEcCc
Confidence            478999999999999999999997 68899998 44442         1122222222211      0000000122355


Q ss_pred             HHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       231 ~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      ++++ ..||+++-|..     .+.|+.+....+ +..+++..+.+.+- .+|- +.|.+..+
T Consensus       304 ~ei~~~~~DIlvPcA~-----~n~i~~~na~~l-~ak~VvEgAN~p~t-~eA~-~iL~~~GI  357 (440)
T 3aog_A          304 ADFWGLPVEFLVPAAL-----EKQITEQNAWRI-RARIVAEGANGPTT-PAAD-DILLEKGV  357 (440)
T ss_dssp             HHHTTCCCSEEEECSS-----SSCBCTTTGGGC-CCSEEECCSSSCBC-HHHH-HHHHHHTC
T ss_pred             hhhhcCCCcEEEecCC-----cCccchhhHHHc-CCcEEEecCccccC-HHHH-HHHHHCCC
Confidence            6765 47999998865     455677666666 46688888888864 4443 44554444

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.70  E-value=0.0026  Score=59.16  Aligned_cols=82  Identities=17%  Similarity=0.144  Sum_probs=53.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|+|+|+|+||+.+++.+ ...+-++.+ +|+.....                   .++..+.++++++ .+|+|+-+.
T Consensus         4 mkI~ViGaGrMG~~i~~~l-~~~~~eLva~~d~~~~~~-------------------~gv~v~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLA-EEKGHEIVGVIENTPKAT-------------------TPYQQYQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCC---------------------CCSCBCSCTTTCT-TCSEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHH-HhCCCEEEEEEecCcccc-------------------CCCceeCCHHHHh-CCCEEEEeC
Confidence            5899999999999999987 444337654 78765320                   1122346788888 999998554


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +  |+..    .+.+. ++.|.-+|....|-
T Consensus        63 ~--p~a~----~~~~~-l~~g~~vVigTTG~   86 (243)
T 3qy9_A           63 N--PNLL----FPLLD-EDFHLPLVVATTGE   86 (243)
T ss_dssp             C--HHHH----HHHHT-SCCCCCEEECCCSS
T ss_pred             C--hHHH----HHHHH-HhcCCceEeCCCCC
Confidence            3  3322    12233 67777777777763

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.68  E-value=0.0041  Score=56.71  Aligned_cols=91  Identities=10%  Similarity=0.161  Sum_probs=56.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHH-hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  240 (394)
                      .+++.|+|+|.+|+.+|+.| ...|. |+++|+++.....         +. .+. ........+   +++. +.++|.|
T Consensus         9 ~~~viI~G~G~~G~~la~~L-~~~g~-v~vid~~~~~~~~---------~~-~~~-~~i~gd~~~~~~l~~a~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRKKV---------LR-SGA-NFVHGDPTRVSDLEKANVRGARAV   75 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHS-TTSEE-EEEESCGGGHHHH---------HH-TTC-EEEESCTTCHHHHHHTTCTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHH-HhCCe-EEEEECCHHHHHH---------Hh-cCC-eEEEcCCCCHHHHHhcCcchhcEE
Confidence            45899999999999999997 68888 9999998754211         11 111 111111223   3333 7889999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      ++++|.+..  .+.-......+.++..+|-
T Consensus        76 i~~~~~d~~--n~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           76 IVDLESDSE--TIHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             EECCSCHHH--HHHHHHHHHHHCSSSEEEE
T ss_pred             EEcCCCcHH--HHHHHHHHHHHCCCCeEEE
Confidence            999985432  3333444555667644443

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.68  E-value=0.065  Score=51.32  Aligned_cols=93  Identities=24%  Similarity=0.333  Sum_probs=65.7

Q ss_pred             ccCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+.|.||+++|=|   ++..+.+..+ ..||++|.+..|..-.. +              ....+  ...+++|.++.+|
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~-~--------------~~~~g--~~~d~~eav~~aD  205 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQD-E--------------ENTFG--TYVSMDEAVESSD  205 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGSC-T--------------TCSSC--EECCHHHHHHHCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHH-HHcCCEEEEECCCccCc-c--------------hhhcC--ccCCHHHHhCCCC
Confidence            4789999999975   6999999986 68999999988743210 0              00111  2458999999999


Q ss_pred             EEEEcCCCCh--------h---hhhcccHHHHhcCCCCcEEEEcC
Q 016162          239 VISLHPVLDK--------T---TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       239 iV~l~lPlt~--------~---t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|..-.-...        .   ...-++.+.++.+|++++|.-|.
T Consensus       206 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          206 VVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             EEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             EEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence            9987421111        1   12447888888899999888774

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.67  E-value=0.0041  Score=60.71  Aligned_cols=72  Identities=15%  Similarity=0.299  Sum_probs=51.0

Q ss_pred             CCeEEEEecChHHHHHHHHHH-hcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la-~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (394)
                      -.+|||||+|.||+..++.++ +.-++++. ++|++.... +.+.+.|       +.   ....+.++++++.  +.|+|
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~---~~~~~~~~~~ll~~~~~D~V   91 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRA-QAALDKY-------AI---EAKDYNDYHDLINDKDVEVV   91 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHH-HHHHHHH-------TC---CCEEESSHHHHHHCTTCCEE
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEE
Confidence            458999999999999999874 23478866 689887543 2233333       11   1224579999997  48999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      ++|+|..
T Consensus        92 ~i~tp~~   98 (357)
T 3ec7_A           92 IITASNE   98 (357)
T ss_dssp             EECSCGG
T ss_pred             EEcCCcH
Confidence            9999943

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.67  E-value=0.0054  Score=58.66  Aligned_cols=126  Identities=17%  Similarity=0.248  Sum_probs=71.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.+|..+|..|+ ..|.  +|..||+..........+ ..+...... .........+ .+.++.||+|+++
T Consensus         1 MkI~ViGaG~vG~~la~~l~-~~~~~~~v~L~D~~~~~~~g~~~d-l~~~~~~~~-~~~~i~~t~d-~~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCL-LNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGID-KYPKIVGGAD-YSLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHSCCSEEEEECSSHHHHHHHHHH-HHHHHHTTT-CCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECChHHHHHHHHH-HHhhhhhcC-CCCEEEEeCC-HHHhCCCCEEEEC
Confidence            47999999999999998874 4455  999999987542211111 000000000 1122222346 7889999999998


Q ss_pred             CCCC--hh-hh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH----cCCcceEE--ee
Q 016162          244 PVLD--KT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLK----QNPMFRVG--LD  297 (394)
Q Consensus       244 lPlt--~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vde~aL~~aL~----~g~l~gaa--lD  297 (394)
                      .+..  +. ++ .++  |.       +.+....|++++++++  .++|.-..+-.-.    ..++.|.+  ||
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            7532  21 11 111  11       2345557899999998  4555443332111    23566664  55

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.67  E-value=0.012  Score=56.16  Aligned_cols=106  Identities=17%  Similarity=0.208  Sum_probs=59.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ..++|+|||.|.||..+|..| ...|.  +|+.+|++.........+ ..+...-.+  ........+. +.+..||+|+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l-~~~g~~~~V~l~d~~~~~~~~~~~~-~~~~~~~~~--~~~v~~~~~~-~~~~~aD~Vi   80 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAA-AQRGIAREIVLEDIAKERVEAEVLD-MQHGSSFYP--TVSIDGSDDP-EICRDADMVV   80 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSSHHHHHHHHHH-HHHTGGGST--TCEEEEESCG-GGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCChhHHHHHHHH-HHhhhhhcC--CeEEEeCCCH-HHhCCCCEEE
Confidence            346899999999999999987 45577  999999986432110111 000000000  1111111243 4678999999


Q ss_pred             EcCCCChhhh------------hccc--HHHHhcCCCCcEEEEcCCCc
Q 016162          242 LHPVLDKTTY------------HLIN--KERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       242 l~lPlt~~t~------------~li~--~~~l~~mk~gailIN~aRG~  275 (394)
                      ++++... ..            .++.  .+.+....+++++|+++.|-
T Consensus        81 i~v~~~~-~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           81 ITAGPRQ-KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             ECCCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             ECCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            9995321 11            1110  11222236788999987654

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.66  E-value=0.0038  Score=61.54  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.1

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .-+.||||+|||.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa-~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAA-KEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCC
Confidence            357899999999999999999996 899999999998753

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.65  E-value=0.16  Score=49.27  Aligned_cols=107  Identities=13%  Similarity=0.095  Sum_probs=70.0

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-...+...+..-......|   ..+....++++.++.+|+
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  227 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRALAQQNG---GNITLTEDVAKGVEGADF  227 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT---CEEEEESCHHHHHTTCSE
T ss_pred             CCCCcEEEEECCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhCCCCE
Confidence            5889999999986  9999999986 578999999988543211111110000011122   123335799999999999


Q ss_pred             EEEcCC-CC-------hh-----hhhcccHHHHhcC-CCCcEEEEcC
Q 016162          240 ISLHPV-LD-------KT-----TYHLINKERLATM-KKEAILVNCS  272 (394)
Q Consensus       240 V~l~lP-lt-------~~-----t~~li~~~~l~~m-k~gailIN~a  272 (394)
                      |..-.= .-       .+     ...-++.+.++.+ ||+++|.-|.
T Consensus       228 vytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          228 IYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             EEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             EEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence            976322 10       11     1245788999999 9999998874

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.58  E-value=0.0067  Score=58.85  Aligned_cols=106  Identities=20%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+++|+|||.|.||..+|..++ ..|.  ++..+|...........+     +.+...  .....  ..+..+.++.||+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~~g~a~D-----L~~~~~~~~~~~i--~~~~~~a~~~aDi   79 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMV-LQGIAQEIGIVDIFKDKTKGDAID-----LEDALPFTSPKKI--YSAEYSDAKDADL   79 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHH-----HHTTGGGSCCCEE--EECCGGGGTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHHHHHHhh-----HhhhhhhcCCcEE--EECcHHHhcCCCE
Confidence            5679999999999999998874 4444  899999976532211111     111100  01111  1233567999999


Q ss_pred             EEEcCCC--Ch-hhh-hcc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 016162          240 ISLHPVL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       240 V~l~lPl--t~-~t~-~li--~-------~~~l~~mk~gailIN~aRG~~vde  279 (394)
                      |+++...  .| .++ .++  |       .+.+....|++++++++.  ++|.
T Consensus        80 Vvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN--Pvdi  130 (326)
T 3vku_A           80 VVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN--PVDI  130 (326)
T ss_dssp             EEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSS--SHHH
T ss_pred             EEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC--chHH
Confidence            9998642  22 112 122  1       123444568999999974  4443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.56  E-value=0.0074  Score=58.13  Aligned_cols=107  Identities=12%  Similarity=0.116  Sum_probs=64.1

Q ss_pred             CeEEEEecChHHH-HHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEE
Q 016162          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~-~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (394)
                      .+|||||+|.+|. .+++.+ +.-+.++ .++|+++... +.+.+.|       +.    ...+.+++++++  +.|+|+
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l-~~~~~~lvav~d~~~~~~-~~~a~~~-------~~----~~~~~~~~~ll~~~~~D~V~   71 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQL-IDAGAELAGVFESDSDNR-AKFTSLF-------PS----VPFAASAEQLITDASIDLIA   71 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHH-HHTTCEEEEEECSCTTSC-HHHHHHS-------TT----CCBCSCHHHHHTCTTCCEEE
T ss_pred             cEEEEECCChHHHHHhhhhh-cCCCcEEEEEeCCCHHHH-HHHHHhc-------CC----CcccCCHHHHhhCCCCCEEE
Confidence            4899999999996 677776 4558885 5788887542 2222222       11    123578999997  689999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~  290 (394)
                      +|+|.....     +-....++.|. +++.- -.-.+-+.++|.++.++..
T Consensus        72 i~tp~~~h~-----~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g  117 (336)
T 2p2s_A           72 CAVIPCDRA-----ELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETG  117 (336)
T ss_dssp             ECSCGGGHH-----HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHC
T ss_pred             EeCChhhHH-----HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence            999943322     12223344454 45542 1223344556666665543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.56  E-value=0.0032  Score=60.78  Aligned_cols=121  Identities=15%  Similarity=0.142  Sum_probs=63.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+|+|||.|.+|..+|..++ ..|.  +|..+|...... +.....+    .+...  ...... ..+ .+.++.||+|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~-~~~~~~ev~L~Di~~~~~-~g~~~dl----~~~~~~~~~~~i~-~~~-~~a~~~aDvV   78 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMA-LRQTANELVLIDVFKEKA-IGEAMDI----NHGLPFMGQMSLY-AGD-YSDVKDCDVI   78 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHH-HTTCSSEEEEECCC---C-CHHHHHH----TTSCCCTTCEEEC---C-GGGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChHHH-HHHHHHH----HHhHHhcCCeEEE-ECC-HHHhCCCCEE
Confidence            358999999999999998874 4455  999999875431 1111111    11100  111111 123 4569999999


Q ss_pred             EEcCCCChhhhhc-------cc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceE
Q 016162          241 SLHPVLDKTTYHL-------IN-------KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRV  294 (394)
Q Consensus       241 ~l~lPlt~~t~~l-------i~-------~~~l~~mk~gailIN~aRG~~vde~aL~~a--L~~g~l~ga  294 (394)
                      +++.+. +...+.       .|       .+.+....|++++++++..-=+....+.+.  +...++.|.
T Consensus        79 ii~~g~-p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           79 VVTAGA-NRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             EECCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             EEcCCC-CCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence            999873 332221       01       112222368999999754222223333332  233356666

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.54  E-value=0.0067  Score=57.74  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=64.8

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEE
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (394)
                      ..+|+|+|+ |++|+.+++.+ ..+|++++ .+||..... +              .  .+...+.+++|+..  ..|++
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g~-~--------------~--~G~~vy~sl~el~~~~~~D~v   68 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGGT-T--------------H--LGLPVFNTVREAVAATGATAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-E--------------E--TTEEEESSHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCcccc-e--------------e--CCeeccCCHHHHhhcCCCCEE
Confidence            458999999 99999999987 56688743 566642100 0              0  11223578999988  89999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l  291 (394)
                      ++++|. +.....+ .+.++ .... .+|..+.|-. -+.+.|.++.++..+
T Consensus        69 iI~tP~-~~~~~~~-~ea~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv  116 (288)
T 2nu8_A           69 VIYVPA-PFCKDSI-LEAID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGV  116 (288)
T ss_dssp             EECCCG-GGHHHHH-HHHHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCH-HHHHHHH-HHHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999993 2333333 22222 1222 3455555532 344578888876544

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.54  E-value=0.063  Score=51.50  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH---HHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-...+..   .+++   ....|.   .+....+++|.++.
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~---a~~~G~---~~~~~~d~~eav~~  217 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGG-VTAGIHVTVAAPEGFLPDPSVRAAAERR---AQDTGA---SVTVTADAHAAAAG  217 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEECCTTSCCCHHHHHHHHHH---HHHHTC---CEEEESCHHHHHTT
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHH---HHHcCC---eEEEEECHHHHhcC
Confidence            4789999999986  9999999986 689999999987543211111   1111   011121   12335799999999


Q ss_pred             cCEEEE-cCCCC------hh-----hhhcccHHHHhcCCCCcEEEEcC
Q 016162          237 ADVISL-HPVLD------KT-----TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l-~lPlt------~~-----t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|+|.. ....-      ++     ...-++.+.++.+||+++|.-+.
T Consensus       218 aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          218 ADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             CCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            999977 33110      00     12446788888888888888774

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.52  E-value=0.0035  Score=60.56  Aligned_cols=102  Identities=17%  Similarity=0.219  Sum_probs=58.3

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|+|||.|.+|.+++..++. +..-++..+|...... +.......+.. ... ......  .+..+.++.||+|+++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~-~g~~~dl~~~~-~~~-~~~~v~--~~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT-KGDALDLEDAQ-AFT-APKKIY--SGEYSDCKDADLVVITA   80 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHGGG-GGS-CCCEEE--ECCGGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHH-HHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEECC
Confidence            689999999999999988743 2333899999976432 22111111111 011 111121  13356799999999998


Q ss_pred             CCChhhhh------------ccc--HHHHhcCCCCcEEEEcCC
Q 016162          245 VLDKTTYH------------LIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 Plt~~t~~------------li~--~~~l~~mk~gailIN~aR  273 (394)
                      +.. ...+            ++.  .+.+....|++++++++.
T Consensus        81 g~~-~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  122 (318)
T 1ez4_A           81 GAP-QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (318)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            642 2221            111  122333468999999854

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.51  E-value=0.0031  Score=60.80  Aligned_cols=106  Identities=21%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ...+|+|||.|.+|..++..++. ++.-+|..||...... +.......+.....+ .......  +..+.++.||+|++
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~v~~--~~~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKV-RGDVMDLKHATPYSP-TTVRVKA--GEYSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHH-HHHHHHHHHHGGGSS-SCCEEEE--CCGGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHh-hhhhhhHHhhhhhcC-CCeEEEe--CCHHHhCCCCEEEE
Confidence            34699999999999999988753 2334899999876432 211111111000000 1111221  33667999999999


Q ss_pred             cCCCChh---hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKT---TY--------HLIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~---t~--------~li~--~~~l~~mk~gailIN~aR  273 (394)
                      +.+....   ++        .++.  .+.+....|++++++++.
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  124 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN  124 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            9864321   11        1111  122333478999999764

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.49  E-value=0.0079  Score=56.75  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=47.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .++++.|||.|.+|+.++..| ...|+ +|++++|+.++. ++..+.+       +.   .+.  .++.  +.++|+|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L-~~~G~~~i~v~nRt~~ka-~~la~~~-------~~---~~~--~~~~--~~~~DivIn  181 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALY-------GY---AYI--NSLE--NQQADILVN  181 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHH-------TC---EEE--SCCT--TCCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CC---ccc--hhhh--cccCCEEEE
Confidence            468999999999999999997 67897 799999997542 2222222       11   111  1222  468999999


Q ss_pred             cCCCC
Q 016162          243 HPVLD  247 (394)
Q Consensus       243 ~lPlt  247 (394)
                      ++|..
T Consensus       182 aTp~g  186 (271)
T 1npy_A          182 VTSIG  186 (271)
T ss_dssp             CSSTT
T ss_pred             CCCCC
Confidence            99954

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.49  E-value=0.042  Score=54.94  Aligned_cols=117  Identities=20%  Similarity=0.226  Sum_probs=73.1

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhc-CCcEEE-EEcCc---------hhhHHHHHHHhhhhhhhhcCCCCccccccC
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~-~G~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (394)
                      |.++.|+++.|.|+|++|+..|+.| .. .|++|+ +.|.+         ....+.++.+..+      ...........
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L-~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~l~~y~~a~~~  276 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLI-SQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG------TVVTYPKGERI  276 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSS------CSTTCSSSEEE
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-HHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhC------CcccCCCceEc
Confidence            3579999999999999999999987 56 899998 44442         1112222222110      00000000122


Q ss_pred             CHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          229 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       229 ~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +.++++ ..||+++-|..     .+.++.+....+ +..+++-.+.+.+- .++- +.|.+..+
T Consensus       277 ~~~eil~~~~DIliP~A~-----~n~i~~~~a~~l-~ak~V~EgAN~p~t-~~a~-~~l~~~Gi  332 (415)
T 2tmg_A          277 TNEELLELDVDILVPAAL-----EGAIHAGNAERI-KAKAVVEGANGPTT-PEAD-EILSRRGI  332 (415)
T ss_dssp             CHHHHTTCSCSEEEECSS-----TTSBCHHHHTTC-CCSEEECCSSSCBC-HHHH-HHHHHTTC
T ss_pred             CchhhhcCCCcEEEecCC-----cCccCcccHHHc-CCeEEEeCCCcccC-HHHH-HHHHHCCC
Confidence            556665 48999998875     455778877777 46688888888864 4443 44555444

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.49  E-value=0.009  Score=57.72  Aligned_cols=70  Identities=11%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (394)
                      .++||||+|.||+. .+..++..-+++|. ++|++++.. +++.+.|+       ..    ..+.|+++++++  .|+|+
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a-~~~a~~~g-------~~----~~y~d~~ell~~~~iDaV~   91 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRA-REMADRFS-------VP----HAFGSYEEMLASDVIDAVY   91 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHH-HHHHHHHT-------CS----EEESSHHHHHHCSSCSEEE
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHcC-------CC----eeeCCHHHHhcCCCCCEEE
Confidence            37999999999986 46665334478876 678887543 33334442       11    235799999954  79999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +|+|..
T Consensus        92 I~tP~~   97 (350)
T 4had_A           92 IPLPTS   97 (350)
T ss_dssp             ECSCGG
T ss_pred             EeCCCc
Confidence            999943

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.49  E-value=0.053  Score=51.86  Aligned_cols=100  Identities=16%  Similarity=0.225  Sum_probs=68.4

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|.+|+++|=   |++..+.+..+ ..| |++|.+..|..-.-.+..       ++..|   ..+....+++|.++.+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~-------~~~~g---~~~~~~~d~~eav~~a  214 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI-------LDELN---YPVKEVENPFEVINEV  214 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH-------HTTCC---SCEEEESCGGGTGGGC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCchhcCCHHH-------HHHcC---CeEEEeCCHHHHhcCC
Confidence            478999999997   59999999986 688 999999988543211111       11112   2233346899999999


Q ss_pred             CEEEEcCCCCh-----hh------hhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHPVLDK-----TT------YHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~lPlt~-----~t------~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|..-.=..+     +.      ..-++.+.++.+||+++|.-|.
T Consensus       215 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          215 DVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             SEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             CEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence            99965433221     11      2446788888888888888774

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.47  E-value=0.0033  Score=61.01  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=58.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ..+|+|||.|.+|.+++..++. ...-++..+|...... +.......+.. ... ......  .+..+.++.||+|+++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~-~g~~~dl~~~~-~~~-~~~~i~--~~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKT-KGDAIDLSNAL-PFT-SPKKIY--SAEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHH-HHHHHHHHTTG-GGS-CCCEEE--ECCGGGGGGCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHh-HHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEEc
Confidence            4689999999999999987742 3334899999976432 22111111111 011 111121  1345679999999999


Q ss_pred             CCCChhhhhc-------ccH-------HHHhcCCCCcEEEEcCC
Q 016162          244 PVLDKTTYHL-------INK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt~~t~~l-------i~~-------~~l~~mk~gailIN~aR  273 (394)
                      .+.. ...+.       .|.       +.+....|++++++++.
T Consensus        84 ag~~-~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  126 (326)
T 2zqz_A           84 AGAP-QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            8643 22211       111       12222368999999854

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.45  E-value=0.0039  Score=63.16  Aligned_cols=75  Identities=9%  Similarity=0.133  Sum_probs=49.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCC-Cc--cccccCCHHHHhcccCEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PV--TWKRASSMDEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~l~ell~~aDiV  240 (394)
                      .+++++|+|.|.||+.+++.| ...|.+|.++||+.... ++..+.       .+.. ..  ......+++++++.+|+|
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L-~~~G~~V~v~~R~~~~a-~~la~~-------~~~~~~~~~Dv~d~~~l~~~l~~~DvV   72 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVL-TDSGIKVTVACRTLESA-KKLSAG-------VQHSTPISLDVNDDAALDAEVAKHDLV   72 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHH-HTTTCEEEEEESSHHHH-HHTTTT-------CTTEEEEECCTTCHHHHHHHHTTSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEECCHHHH-HHHHHh-------cCCceEEEeecCCHHHHHHHHcCCcEE
Confidence            478999999999999999998 47889999999987542 111100       0100 00  011112456788899999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      +.++|..
T Consensus        73 In~a~~~   79 (450)
T 1ff9_A           73 ISLIPYT   79 (450)
T ss_dssp             EECCC--
T ss_pred             EECCccc
Confidence            9999954

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.42  E-value=0.013  Score=56.62  Aligned_cols=107  Identities=21%  Similarity=0.225  Sum_probs=61.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch-hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ..++|+|||.|.+|..+|..+ ...|. +|..+|+.+ ....+.......+.....+ .........+ .+.++.||+|+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l-~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~-~~~~i~~t~d-~~a~~~aDvVI   83 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLL-AQKELADVVLVDIPQLENPTKGKALDMLEASPVQG-FDANIIGTSD-YADTADSDVVV   83 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHT-CCCCEEEESC-GGGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhcc-CCCEEEEcCC-HHHhCCCCEEE
Confidence            467999999999999999987 45677 999999984 2222211111111000000 0111111233 35689999999


Q ss_pred             EcCC--CChh-hh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 016162          242 LHPV--LDKT-TY-HLI--N----K---ERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lP--lt~~-t~-~li--~----~---~~l~~mk~gailIN~aR  273 (394)
                      ++..  ..|. ++ .++  |    .   +.+....|++++++++.
T Consensus        84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            9863  2221 11 122  1    1   12333368999999985

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.39  E-value=0.0076  Score=61.38  Aligned_cols=126  Identities=13%  Similarity=0.212  Sum_probs=72.7

Q ss_pred             CCeEEEEecChH-HHHHHHHHHh---cC-CcEEEEEcCchhhHHH--HHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       165 gktvGIIGlG~I-G~~vA~~la~---~~-G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .++|+|||.|.. |.++|..|++   ++ +-+|..||+.......  +..+.|   +...+ .+.......|+++.++.|
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~---l~~~~-~~~~I~~t~D~~eal~~A  103 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVF---IREKA-PDIEFAATTDPEEAFTDV  103 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHH---HHHHC-TTSEEEEESCHHHHHSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHH---hccCC-CCCEEEEECCHHHHHcCC
Confidence            469999999998 6656655443   45 6689999998754211  111111   11111 122333346888999999


Q ss_pred             CEEEEcCCCChh---hh----------------------------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 016162          238 DVISLHPVLDKT---TY----------------------------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVE  284 (394)
Q Consensus       238 DiV~l~lPlt~~---t~----------------------------~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~  284 (394)
                      |+|++++|....   ++                            .++-  .+.+....|++++||++..--+-+.++.+
T Consensus       104 D~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k  183 (472)
T 1u8x_X          104 DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRR  183 (472)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Confidence            999999985221   11                            0110  12233345899999998755444444444


Q ss_pred             HHHcCCcceE
Q 016162          285 HLKQNPMFRV  294 (394)
Q Consensus       285 aL~~g~l~ga  294 (394)
                      ..-..++.|.
T Consensus       184 ~~p~~rViG~  193 (472)
T 1u8x_X          184 LRPNSKILNI  193 (472)
T ss_dssp             HSTTCCEEEC
T ss_pred             hCCCCCEEEe
Confidence            3323355555

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.39  E-value=0.0074  Score=58.56  Aligned_cols=104  Identities=22%  Similarity=0.314  Sum_probs=59.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .++|+|||.|.||..+|..++ ..|.  +|..+|+..........+ ..+. ...-......  ..+..+.++.||+|++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~-~~~~~~~l~l~D~~~~k~~g~a~D-L~~~-~~~~~~~v~i--~~~~~~a~~~aDvVvi   79 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALI-NQGITDELVVIDVNKEKAMGDVMD-LNHG-KAFAPQPVKT--SYGTYEDCKDADIVCI   79 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHH-HHHT-GGGSSSCCEE--EEECGGGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEecchHHHHHHHHH-HHhc-cccccCCeEE--EeCcHHHhCCCCEEEE
Confidence            568999999999999999874 4455  899999976532211111 1000 0000001111  1222457899999999


Q ss_pred             cCCC--Chh-hh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          243 HPVL--DKT-TY-HLI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPl--t~~-t~-~li--~~-------~~l~~mk~gailIN~aR  273 (394)
                      +.+.  .+. ++ .++  |.       +.+....|++++++++.
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            8752  221 11 111  11       23334568999999975

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.37  E-value=0.0072  Score=57.99  Aligned_cols=103  Identities=15%  Similarity=0.223  Sum_probs=58.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||.|.+|..+|..++ ..|. +|..+|...... +.......+...... .........+. +.++.||+|+++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la-~~g~~~v~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~a~   78 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLA-AKELGDIVLLDIVEGVP-QGKALDLYEASPIEG-FDVRVTGTNNY-ADTANSDVIVVTS   78 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCCeEEEEeCCccHH-HHHHHhHHHhHhhcC-CCeEEEECCCH-HHHCCCCEEEEcC
Confidence            58999999999999999874 5565 899999876432 221111111100001 11112222566 6689999999997


Q ss_pred             CCChhhhh------------ccc--HHHHhcCCCCcEEEEcCC
Q 016162          245 VLDKTTYH------------LIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 Plt~~t~~------------li~--~~~l~~mk~gailIN~aR  273 (394)
                      +. |...+            ++.  .+.+....|++++++++.
T Consensus        79 g~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           79 GA-PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence            52 32211            110  122333358999999754

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.35  E-value=0.095  Score=50.64  Aligned_cols=104  Identities=19%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH---HHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-...+..   .+++   ....|   ..+....+++|.+++
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~---a~~~G---~~v~~~~d~~eav~~  236 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEI---VKETD---GSVSFTSNLEEALAG  236 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHH---HHHHC---CEEEEESCHHHHHTT
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHH---HHHcC---CeEEEEcCHHHHHcc
Confidence            4889999999986  9999999986 689999999988543211111   1111   01112   123335799999999


Q ss_pred             cCEEEEc-CCC------Chh-----hhhcccHHHHhcC-CCCcEEEEcC
Q 016162          237 ADVISLH-PVL------DKT-----TYHLINKERLATM-KKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~-lPl------t~~-----t~~li~~~~l~~m-k~gailIN~a  272 (394)
                      +|+|..- ...      .++     ...-++++.++.+ |++++|.-+.
T Consensus       237 aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          237 ADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             CSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             CCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            9999763 310      011     1245688888888 8899888874

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.35  E-value=0.0035  Score=60.20  Aligned_cols=99  Identities=12%  Similarity=0.171  Sum_probs=56.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .++|+|||.|.+|..+|..++ .-|.  +|..+|.... ......+ ..    +.....  .....++ +.++.||+|++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~-~~g~~~ev~L~Di~~~-~~g~a~d-l~----~~~~~~--i~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAIS-AKGIADRLVLLDLSEG-TKGATMD-LE----IFNLPN--VEISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECCC------CHHH-HH----HHTCTT--EEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEcCCcc-hHHHHHH-Hh----hhcCCC--eEEeCCH-HHHCCCCEEEE
Confidence            479999999999999998874 3455  9999999864 2211111 11    111111  1223566 56899999999


Q ss_pred             cCCCC----------hhhhhccc--HHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLD----------KTTYHLIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt----------~~t~~li~--~~~l~~mk~gailIN~aR  273 (394)
                      +....          .++..++.  .+.+....|++++++++.
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            97321          11111111  112222248999999877

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.33  E-value=0.013  Score=59.25  Aligned_cols=103  Identities=16%  Similarity=0.207  Sum_probs=71.2

Q ss_pred             ccccCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC
Q 016162          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (394)
Q Consensus       160 g~~l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
                      +..+.|++|+|+|+.          .-...+++.| ...|++|.+|||.......   ..|       .    ......+
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L-~~~g~~v~~~DP~~~~~~~---~~~-------~----~~~~~~~  381 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAAL-QDAGATVKAYDPEGVEQAS---KML-------T----DVEFVEN  381 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHH-HHTSCEEEEECSSCHHHHG---GGC-------S----SCCBCSC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCCHhHH---Hhc-------C----CceEecC
Confidence            457899999999997          6678999998 7899999999998753211   111       0    1123468


Q ss_pred             HHHHhcccCEEEEcCCCChhhhhcccHHHH-hcCCCCcEEEEcCCCcccCHHHH
Q 016162          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVAL  282 (394)
Q Consensus       230 l~ell~~aDiV~l~lPlt~~t~~li~~~~l-~~mk~gailIN~aRG~~vde~aL  282 (394)
                      +++.++.+|.|+++++ .++-+. ++-+.+ +.|+ +.+++|+ |+ +.|.+.+
T Consensus       382 ~~~~~~~ad~vvi~t~-~~~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          382 PYAAADGADALVIVTE-WDAFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             HHHHHTTBSEEEECSC-CTTTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             hhHHhcCCCEEEEeeC-CHHhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            8999999999999987 333322 455554 4465 4678885 53 4565544

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.33  E-value=0.039  Score=53.57  Aligned_cols=107  Identities=13%  Similarity=0.160  Sum_probs=70.1

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-...+...+..-......|   ..+....++++.++.+|+
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  227 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF  227 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CcCCeEEEEecCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCE
Confidence            5889999999986  9999999986 689999999988543211111110000001112   122335799999999999


Q ss_pred             EEEcCC-C-------Chh-----hhhcccHHHHhcC-CCCcEEEEcC
Q 016162          240 ISLHPV-L-------DKT-----TYHLINKERLATM-KKEAILVNCS  272 (394)
Q Consensus       240 V~l~lP-l-------t~~-----t~~li~~~~l~~m-k~gailIN~a  272 (394)
                      |..-.= .       ..+     ...-++.+.++.+ ||+++|.-|.
T Consensus       228 vytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            976322 1       011     1245788999999 9999998873

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.32  E-value=0.0091  Score=57.86  Aligned_cols=107  Identities=17%  Similarity=0.294  Sum_probs=60.3

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ...++|+|||.|.+|..+|..++ ..|. +|..+|+..........+ ..+.....+ .........+. +.++.||+|+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~-~~~~~~v~L~Di~~~~~~g~~~d-l~~~~~~~~-~~~~v~~t~d~-~a~~~aDiVI   80 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAG-LKELGDVVLFDIAEGTPQGKGLD-IAESSPVDG-FDAKFTGANDY-AAIEGADVVI   80 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHH-HHHHHHHHT-CCCCEEEESSG-GGGTTCSEEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCchhHHHHHHH-HhchhhhcC-CCCEEEEeCCH-HHHCCCCEEE
Confidence            45679999999999999999874 4555 999999987542111111 000000000 11112222354 6799999999


Q ss_pred             EcCCC--Chh-hh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          242 LHPVL--DKT-TY-HLI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPl--t~~-t~-~li--~~-------~~l~~mk~gailIN~aR  273 (394)
                      ++.+.  .+. ++ .++  |.       +.+....|++++++++.
T Consensus        81 iaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           81 VTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             ECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            99642  221 11 111  11       12223358999999985

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.25  E-value=0.0027  Score=57.96  Aligned_cols=68  Identities=15%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             CeEEEEecChHHHHHHHH-HHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~-la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+++|||.|++|+.+++. .....|+++. ++|.++.....           .  ..+..+....++++++++.|+|+++
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~-----------~--i~gv~V~~~~dl~eli~~~D~ViIA  152 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT-----------E--VGGVPVYNLDDLEQHVKDESVAILT  152 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTC-----------E--ETTEEEEEGGGHHHHCSSCCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHh-----------H--hcCCeeechhhHHHHHHhCCEEEEe
Confidence            479999999999999993 2235577655 66877654210           0  1112223356899999777999999


Q ss_pred             CCC
Q 016162          244 PVL  246 (394)
Q Consensus       244 lPl  246 (394)
                      +|.
T Consensus       153 vPs  155 (215)
T 2vt3_A          153 VPA  155 (215)
T ss_dssp             SCH
T ss_pred             cCc
Confidence            993

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.21  E-value=0.027  Score=56.07  Aligned_cols=73  Identities=15%  Similarity=0.160  Sum_probs=48.8

Q ss_pred             CeEEEEecCh---HHHHHHHHHHhcCCcEEE--EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc----
Q 016162          166 QTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----  236 (394)
Q Consensus       166 ktvGIIGlG~---IG~~vA~~la~~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----  236 (394)
                      .+|||||+|.   ||+..+..+...-+++++  ++|+++... +++.+.|       +...  ...+.++++++..    
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~~  107 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKA-EASGREL-------GLDP--SRVYSDFKEMAIREAKL  107 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHH-HHHHHHH-------TCCG--GGBCSCHHHHHHHHHHC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHH-HHHHHHc-------CCCc--ccccCCHHHHHhccccc
Confidence            5899999999   999988776333346765  579887643 2333333       2211  1235799999986    


Q ss_pred             ---cCEEEEcCCCCh
Q 016162          237 ---ADVISLHPVLDK  248 (394)
Q Consensus       237 ---aDiV~l~lPlt~  248 (394)
                         .|+|++|+|...
T Consensus       108 ~~~vD~V~I~tp~~~  122 (417)
T 3v5n_A          108 KNGIEAVAIVTPNHV  122 (417)
T ss_dssp             TTCCSEEEECSCTTS
T ss_pred             CCCCcEEEECCCcHH
Confidence               899999999543

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.19  E-value=0.0079  Score=56.86  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|+| +|+||+.+++.+...-++++.+ +|+......-.   ..+   .-.|... +.....++++++.++|+|+-+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~---d~g---el~g~~~-gv~v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ---DAG---AFLGKQT-GVALTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS---BTT---TTTTCCC-SCBCBCCHHHHHHHCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc---cHH---HHhCCCC-CceecCCHHHHhcCCCEEEEc
Confidence            5899999 9999999999875566888776 68764321000   000   0001111 233357899999999999988


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      .+  |+...   +..-..++.|.-+|-...|
T Consensus        81 T~--p~a~~---~~~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           81 TL--PEGTL---VHLDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             SC--HHHHH---HHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHHH---HHHHHHHHcCCCEEEECCC
Confidence            76  43221   1111223456666666666

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.18  E-value=0.012  Score=57.35  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=46.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcC--------CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGF--------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~--------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (394)
                      +--+|||||+|.||+.-++.+ +.+        +++|. ++|++.... +++.+.|+       ..    ..+.|+++++
T Consensus        24 kkirvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~~~a-~~~a~~~g-------~~----~~y~d~~ell   90 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANAGLA-EARAGEFG-------FE----KATADWRALI   90 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC--TTH-HHHHHHHT-------CS----EEESCHHHHH
T ss_pred             CCccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCHHHH-HHHHHHhC-------CC----eecCCHHHHh
Confidence            345899999999999876654 222        55655 668876543 33334442       11    2357999999


Q ss_pred             c--ccCEEEEcCCCC
Q 016162          235 R--EADVISLHPVLD  247 (394)
Q Consensus       235 ~--~aDiV~l~lPlt  247 (394)
                      +  +.|+|++|+|..
T Consensus        91 ~~~~iDaV~IatP~~  105 (393)
T 4fb5_A           91 ADPEVDVVSVTTPNQ  105 (393)
T ss_dssp             HCTTCCEEEECSCGG
T ss_pred             cCCCCcEEEECCChH
Confidence            6  479999999943

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.17  E-value=0.008  Score=58.39  Aligned_cols=105  Identities=8%  Similarity=0.060  Sum_probs=61.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ..++|+|||.|.||..+|..++ ..|.  +|..+|...........+ ..+.. .... ........+.++ +++||+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la-~~g~~~ev~L~Di~~~~~~g~a~D-L~~~~-~~~~-~~~i~~t~d~~~-~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVL-MKDLADEVALVDVMEDKLKGEMMD-LEHGS-LFLH-TAKIVSGKDYSV-SAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHH-HHCCCSEEEEECSCHHHHHHHHHH-HHHHG-GGSC-CSEEEEESSSCS-CSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHH-hhhhh-hccc-CCeEEEcCCHHH-hCCCCEEE
Confidence            5689999999999999998874 4455  899999976542211111 10000 0000 111122345665 99999999


Q ss_pred             EcCCC--Chh-hh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          242 LHPVL--DKT-TY-HLI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPl--t~~-t~-~li--~~-------~~l~~mk~gailIN~aR  273 (394)
                      ++...  .|. ++ .++  |.       +.+....|++++++++.
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            98542  111 11 111  11       23334478999999975

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.17  E-value=0.019  Score=55.41  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=59.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.||..+|..++ ..|.  +|..+|...........+ ..+.....+ ....... .+..+.++.||+|+++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~~g~a~D-L~~~~~~~~-~~~~v~~-~~~~~a~~~aDvVii~   76 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVA-RQDVAKEVVMVDIKDGMPQGKALD-MRESSPIHG-FDTRVTG-TNDYGPTEDSDVCIIT   76 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCSSEEEEECSSTTHHHHHHHH-HHHHHHHHT-CCCEEEE-ESSSGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCchHHHHHHHHH-HhccccccC-CCcEEEE-CCCHHHhCCCCEEEEC
Confidence            47999999999999998874 3344  999999987542111111 100000000 0111111 1345779999999999


Q ss_pred             CCCC--hh-hh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016162          244 PVLD--KT-TY-HLI--N-------KERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt--~~-t~-~li--~-------~~~l~~mk~gailIN~aR  273 (394)
                      .+..  |. ++ .++  |       .+.+....|++++++++.
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            7632  11 11 111  1       123444568999999985

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.15  E-value=0.072  Score=50.98  Aligned_cols=104  Identities=12%  Similarity=0.043  Sum_probs=70.7

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-...+...+       ...     +....+++|.++++|+|
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~-------~~~-----~~~~~d~~eav~~aDvv  217 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVA-PLAGLKVRVATPKGYEPDPGLLK-------RAN-----AFFTHDPKEAALGAHAL  217 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHH-------HHT-----CEEESCHHHHHTTCSEE
T ss_pred             CcCCcEEEEECCCchhHHHHHHHH-HHcCCEEEEECCchhcCCHHHHh-------hce-----eEEECCHHHHhcCCCEE
Confidence            488999999997 88999998886 68899999998754321111111       000     22357899999999999


Q ss_pred             EEc-CCCC-----hh------hhhcccHHHHhcCCCCcEEEEcC---CCcccC
Q 016162          241 SLH-PVLD-----KT------TYHLINKERLATMKKEAILVNCS---RGPVID  278 (394)
Q Consensus       241 ~l~-lPlt-----~~------t~~li~~~~l~~mk~gailIN~a---RG~~vd  278 (394)
                      ..- ...-     +.      ...-++.+.++.+||+++|.-+.   ||.=|+
T Consensus       218 y~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~  270 (301)
T 2ef0_A          218 YTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETT  270 (301)
T ss_dssp             EECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBC
T ss_pred             EecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccC
Confidence            773 3110     11      12456889999999999998886   554444

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.15  E-value=0.006  Score=61.84  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhccc
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREA  237 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~a  237 (394)
                      ..-+++|++|.|+|.|.+|.+.++.| ...|++|+++|+.......+..+        .+.  +.+.. ..+ ++.+..+
T Consensus         6 ~~~~l~~~~vlVvGgG~va~~k~~~L-~~~ga~V~vi~~~~~~~~~~l~~--------~~~--i~~~~~~~~-~~~l~~~   73 (457)
T 1pjq_A            6 IFCQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWAN--------EGM--LTLVEGPFD-ETLLDSC   73 (457)
T ss_dssp             EEECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHT--------TTS--CEEEESSCC-GGGGTTC
T ss_pred             eEEECCCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEcCCCCHHHHHHHh--------cCC--EEEEECCCC-ccccCCc
Confidence            34578999999999999999999998 68999999999976554332211        111  11211 112 2346789


Q ss_pred             CEEEEcCCCChh
Q 016162          238 DVISLHPVLDKT  249 (394)
Q Consensus       238 DiV~l~lPlt~~  249 (394)
                      |+|+.+. ..++
T Consensus        74 ~lVi~at-~~~~   84 (457)
T 1pjq_A           74 WLAIAAT-DDDT   84 (457)
T ss_dssp             SEEEECC-SCHH
T ss_pred             cEEEEcC-CCHH
Confidence            9888864 4553

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.13  E-value=0.018  Score=58.20  Aligned_cols=126  Identities=13%  Similarity=0.155  Sum_probs=73.8

Q ss_pred             CCeEEEEecChH-HHHHHHHHHh---cC-CcEEEEEcCch--hhHHH--HHHHhhhhhhhhcCCCCccccccCCHHHHhc
Q 016162          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQ--ATRLE--KFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (394)
Q Consensus       165 gktvGIIGlG~I-G~~vA~~la~---~~-G~~V~~~d~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (394)
                      ..+|+|||.|.. |..++..|++   ++ +-+|..||+..  .....  +....|   +...+ .+.......++++.++
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~---~~~~~-~~~~i~~t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRM---VEKAG-VPIEIHLTLDRRRALD   82 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHH---HHHTT-CCCEEEEESCHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHH---HhhcC-CCcEEEEeCCHHHHhC
Confidence            358999999999 8887665543   34 56899999987  43211  111111   11111 2233333468888999


Q ss_pred             ccCEEEEcCCCChh---hh--------hc--------------------cc--HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 016162          236 EADVISLHPVLDKT---TY--------HL--------------------IN--KERLATMKKEAILVNCSRGPVIDEVAL  282 (394)
Q Consensus       236 ~aDiV~l~lPlt~~---t~--------~l--------------------i~--~~~l~~mk~gailIN~aRG~~vde~aL  282 (394)
                      .||+|+++.|....   ++        ++                    +.  .+.+....|++++||++..--+-+.++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~  162 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  162 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            99999999994321   11        11                    10  122333458999999988654555555


Q ss_pred             HHHHHcCCcceE
Q 016162          283 VEHLKQNPMFRV  294 (394)
Q Consensus       283 ~~aL~~g~l~ga  294 (394)
                      .+..-..++.|.
T Consensus       163 ~k~~p~~rViG~  174 (450)
T 1s6y_A          163 LRYTKQEKVVGL  174 (450)
T ss_dssp             HHHCCCCCEEEC
T ss_pred             HHhCCCCCEEEe
Confidence            554322245554

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.12  E-value=0.0082  Score=58.52  Aligned_cols=68  Identities=10%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcC-CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (394)
                      .+|||||+|.||+. .++.+ +.. +++|. ++|++.....    +.|       +    +...+.++++++.  +.|+|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~~ll~~~~vD~V   69 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLL-DVLDEYQISKIMTSRTEEVK----RDF-------P----DAEVVHELEEITNDPAIELV   69 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECSCHHHHH----HHC-------T----TSEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEEccCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHH----hhC-------C----CCceECCHHHHhcCCCCCEE
Confidence            48999999999997 67766 444 77775 6788764421    111       1    1223578999998  78999


Q ss_pred             EEcCCCChh
Q 016162          241 SLHPVLDKT  249 (394)
Q Consensus       241 ~l~lPlt~~  249 (394)
                      ++|+|....
T Consensus        70 ~i~tp~~~H   78 (358)
T 3gdo_A           70 IVTTPSGLH   78 (358)
T ss_dssp             EECSCTTTH
T ss_pred             EEcCCcHHH
Confidence            999995443

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.12  E-value=0.03  Score=54.58  Aligned_cols=102  Identities=17%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh------------------hHHHHHHHhhhhhhhhcCCCC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (394)
                      ..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|+..-                  .+.+...    ..+.+..- .
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La-~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa----~~L~~inP-~  103 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA----ASLKRIFP-L  103 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHH----HHHHHHCT-T
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHH----HHHHHhCC-C
Confidence            4689999999999999999999985 6666 7888887430                  0111111    11121110 1


Q ss_pred             ccccc---------------------cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          222 VTWKR---------------------ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       222 ~~~~~---------------------~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +....                     ...++++++++|+|+.|+- +.+++.+++..-..   .+.-+|+.+
T Consensus       104 v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~---~~~plI~aa  171 (340)
T 3rui_A          104 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA  171 (340)
T ss_dssp             CEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHH---TTCEEEEEE
T ss_pred             CEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHH---cCCcEEEee
Confidence            11111                     1135678999999999986 67788888775553   345677764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.12  E-value=0.017  Score=55.76  Aligned_cols=110  Identities=17%  Similarity=0.260  Sum_probs=61.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..++|+|||.|.+|..+|..++ ..|. +|..+|+..........+ ..+.....+ .........+ .+.++.||+|++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~-~~~~~~v~l~Di~~~~~~g~a~d-L~~~~~~~~-~~~~v~~t~d-~~a~~~aDvVIi   79 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLAL-IKQLGDVVLFDIAQGMPNGKALD-LLQTCPIEG-VDFKVRGTND-YKDLENSDVVIV   79 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHH-HHTTHHHHT-CCCCEEEESC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCChHHHHHHHHH-HHhhhhhcC-CCcEEEEcCC-HHHHCCCCEEEE
Confidence            3579999999999999998874 4444 999999987542111111 100000000 1111221234 467999999999


Q ss_pred             cCCC--Chh-hh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 016162          243 HPVL--DKT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       243 ~lPl--t~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vde  279 (394)
                      +.+.  .+. ++ .++  |.       +.+....|++++++++.  ++|.
T Consensus        80 ~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~  127 (321)
T 3p7m_A           80 TAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN--PLDI  127 (321)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHH
T ss_pred             cCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC--chHH
Confidence            8642  221 11 111  11       12223358899999954  4444

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.11  E-value=0.092  Score=51.03  Aligned_cols=104  Identities=17%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH---HHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|.||+++|= +++..+.+..+ ..||++|.+..|..-...+.+   .+++   ....|   ..+....+++|.++.+
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~---a~~~G---~~v~~~~d~~eav~~a  248 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLAS-AKVGMHMTVATPVGYRPNEEIVKKALAI---AKETG---AEIEILHNPELAVNEA  248 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHH---HHHHC---CCEEEESCHHHHHTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHH---HHHcC---CeEEEECCHHHHhCCC
Confidence            378999999986 56777777775 578999999887532111111   1111   01112   1223357899999999


Q ss_pred             CEEEEcCCCCh------h-----hhhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHPVLDK------T-----TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~lPlt~------~-----t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|..-.=...      +     ...-++.+.++.+|++++|.-|.
T Consensus       249 DVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          249 DFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             SEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             CEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            99976432110      0     12357888999999999998875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.11  E-value=0.011  Score=53.53  Aligned_cols=77  Identities=13%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-CCccccccCCHHHHhcccC
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aD  238 (394)
                      ..+.|++|.|.|. |.||+.+++.| ...|.+|++.+|+.....+ .        ...+. .........++.+.+..+|
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~-~--------~~~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSEL-KNKGHEPVAMVRNEEQGPE-L--------RERGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHHH-H--------HHTTCSEEEECCTTSCCGGGGTTCS
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHH-HhCCCeEEEEECChHHHHH-H--------HhCCCceEEEcccHHHHHHHHcCCC
Confidence            5789999999997 99999999998 5779999999998764321 1        11111 0000000145677888999


Q ss_pred             EEEEcCCCC
Q 016162          239 VISLHPVLD  247 (394)
Q Consensus       239 iV~l~lPlt  247 (394)
                      +|+.+....
T Consensus        87 ~vi~~ag~~   95 (236)
T 3e8x_A           87 AVVFAAGSG   95 (236)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999887644

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.10  E-value=0.079  Score=51.99  Aligned_cols=106  Identities=15%  Similarity=0.149  Sum_probs=68.5

Q ss_pred             cCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhH--HHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       163 l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +.|+||+++|=|  ++..+.+..+ ..+|++|.+..|..-..  .+++.+..-+.....|   ..+....++++.++.||
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~-~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~aD  253 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGA-AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG---GSLRFSTDKILAAQDAD  253 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHH-HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS---CEEEEESCHHHHTTTCS
T ss_pred             CCCCEEEEECCCCcchHHHHHHHH-HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC---CEEEEECCHHHHhcCCC
Confidence            889999999988  7888888876 58999999998753221  1111110000011112   12334579999999999


Q ss_pred             EEEEcC----CCChh---h------hhcccHHHHhcCCCCcEEEEcC
Q 016162          239 VISLHP----VLDKT---T------YHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       239 iV~l~l----Plt~~---t------~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|..-+    ....+   .      ..-++.+.++.+|++++|.-|.
T Consensus       254 VVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          254 VIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             EEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             EEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            998632    21111   0      1347888999999999998874

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.09  E-value=0.036  Score=55.52  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=73.4

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCch---------hhHHHHHHHhhhhhhhhcCCC-CccccccC
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVTAYGQFLKANGEQ-PVTWKRAS  228 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  228 (394)
                      |.+++|+||.|-|+|++|+..|+.| ...|++|+ +.|.+.         ...+.+..       ...+.. ... ....
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l-~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~-------~~~g~i~~~~-a~~~  286 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFM-HDAGAKVIGISDANGGLYNPDGLDIPYLLDKR-------DSFGMVTNLF-TDVI  286 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHH-HHHTCEEEEEECSSCEEECTTCCCHHHHHHHC-------CSSSCCGGGC-SCCB
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHH-------HHhCCCCCCC-cEEe
Confidence            3579999999999999999999997 68899986 455541         11111111       111110 000 1123


Q ss_pred             CHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          229 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       229 ~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +.++++ ..||+++=|..     .+.|+.+....+ +-.+++..+.+.+- .+| .+.|++..+
T Consensus       287 ~~~~i~~~~~DIliPcA~-----~n~I~~~~a~~l-~ak~V~EgAN~p~t-~eA-~~iL~~rGI  342 (424)
T 3k92_A          287 TNEELLEKDCDILVPAAI-----SNQITAKNAHNI-QASIVVERANGPTT-IDA-TKILNERGV  342 (424)
T ss_dssp             CHHHHHHSCCSEEEECSC-----SSCBCTTTGGGC-CCSEEECCSSSCBC-HHH-HHHHHHTTC
T ss_pred             cCccceeccccEEeecCc-----ccccChhhHhhc-CceEEEcCCCCCCC-HHH-HHHHHHCCC
Confidence            556654 57999988865     567888777777 46688888998863 333 456666554

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.07  E-value=0.022  Score=57.15  Aligned_cols=117  Identities=17%  Similarity=0.209  Sum_probs=65.9

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCch--------------hhHHHHHHHhhhhhhhhcCCCCcccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ--------------ATRLEKFVTAYGQFLKANGEQPVTWK  225 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (394)
                      .++.|++|.|.|+|++|+.+|+.| ...|++|+ +.|.+.              ...+.+..+..+. +.  +...  . 
T Consensus       208 ~~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~-i~--~~~~--a-  280 (421)
T 2yfq_A          208 IKMEDAKIAVQGFGNVGTFTVKNI-ERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKT-LI--GFPG--A-  280 (421)
T ss_dssp             CCGGGSCEEEECCSHHHHHHHHHH-HHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCC-cc--cCCC--c-
Confidence            478999999999999999999997 68999998 445551              0122222221110 00  0000  0 


Q ss_pred             ccCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       226 ~~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ...+.++++ ..||+++-|.+     .+.|+.+....+ +..+++..+.|.+- .++ .+.|++..+.
T Consensus       281 ~~i~~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t-~ea-~~il~~~GI~  340 (421)
T 2yfq_A          281 ERITDEEFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT-PEG-DKVLTERGIN  340 (421)
T ss_dssp             --------------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC-HHH-HHHHHHHTCE
T ss_pred             eEeCccchhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC-HHH-HHHHHHCCCE
Confidence            111223443 46999998865     556888887777 47788888888864 333 3445544443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.06  E-value=0.018  Score=58.17  Aligned_cols=98  Identities=13%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             ccccCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC
Q 016162          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (394)
Q Consensus       160 g~~l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||.......   ..|+.          ......+
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~---~~~~~----------~~~~~~~  378 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKL-LEVGCRVRVYDPVAMKEAQ---KRLGD----------KVEYTTD  378 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSCHHHHH---HHHGG----------GSEECSS
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCcHHHH---HhcCc----------cceecCC
Confidence            356899999999984          3467889998 7899999999998753211   12210          0123468


Q ss_pred             HHHHhcccCEEEEcCCCChhhhhcccHHHH-hcCCCCcEEEEcCCCc
Q 016162          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGP  275 (394)
Q Consensus       230 l~ell~~aDiV~l~lPlt~~t~~li~~~~l-~~mk~gailIN~aRG~  275 (394)
                      +++.++.+|.|+++++ .++-+. ++-+.+ +.|+ +.+++|. |+-
T Consensus       379 ~~~~~~~ad~~vi~t~-~~~f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          379 MYDAVRGAEALFHVTE-WKEFRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             HHHHTTTCSCEEECSC-CGGGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             HHHHhcCCCEEEEccC-CHHHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            8999999999999987 334333 354444 4465 6689995 543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.06  E-value=0.014  Score=56.97  Aligned_cols=76  Identities=24%  Similarity=0.308  Sum_probs=49.2

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +.+++|+|||. |.+|+.+|..+ ...|  -+|..+|...........+     +.+............+..+.++.||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l-~~~g~~~evvLiDi~~~k~~g~a~D-----L~~~~~~~~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTA-AMMRLTPNLCLYDPFAVGLEGVAEE-----IRHCGFEGLNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHH-HHTTCCSCEEEECSCHHHHHHHHHH-----HHHHCCTTCCCEEESCHHHHHTTEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHH-HhcCCCCEEEEEeCCchhHHHHHHh-----hhhCcCCCCceEEcCCHHHHhCCCCE
Confidence            45789999998 99999999776 3455  4899999976432111111     11111111112223578888999999


Q ss_pred             EEEcC
Q 016162          240 ISLHP  244 (394)
Q Consensus       240 V~l~l  244 (394)
                      |+++.
T Consensus        80 Vvita   84 (343)
T 3fi9_A           80 IVSSG   84 (343)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99985

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.05  E-value=0.01  Score=56.47  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=65.4

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEE
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (394)
                      .++|.|+|+ |++|+.+++.+ +..|++++ .++|....                 ....+...+.+++|+..  ..|++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l-~~~g~~~v~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~~~Dv~   68 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGG-----------------MEVLGVPVYDTVKEAVAHHEVDAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHH-HHcCCeEEEEECCCCCC-----------------ceECCEEeeCCHHHHhhcCCCCEE
Confidence            468999999 99999999987 56788843 66664311                 00012234578999988  89999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCc-EEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPV-IDEVALVEHLKQNPM  291 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~ga-ilIN~aRG~~-vde~aL~~aL~~g~l  291 (394)
                      ++++|. +.+...+. +..+   .|. .+|..+.|-. -+++.|.++.++..+
T Consensus        69 Ii~vp~-~~~~~~~~-ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi  116 (288)
T 1oi7_A           69 IIFVPA-PAAADAAL-EAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGS  116 (288)
T ss_dssp             EECCCH-HHHHHHHH-HHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCH-HHHHHHHH-HHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999992 23333332 2222   222 2555665532 345578887776544

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.03  E-value=0.012  Score=58.06  Aligned_cols=69  Identities=19%  Similarity=0.279  Sum_probs=49.1

Q ss_pred             CeEEEEecC-hHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEE
Q 016162          166 QTVGVIGAG-RIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (394)
Q Consensus       166 ktvGIIGlG-~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (394)
                      .+|||||+| .+|+..++.+.+.-++++. ++|++.... +++.+.|       +.     ..+.|+++++.+  .|+|+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g~-----~~~~~~~ell~~~~vD~V~   69 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVR-ERFGKEY-------GI-----PVFATLAEMMQHVQMDAVY   69 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHH-HHHHHHH-------TC-----CEESSHHHHHHHSCCSEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHH-HHHHHHc-------CC-----CeECCHHHHHcCCCCCEEE
Confidence            479999999 9999999887433467765 678876543 2222222       21     235799999975  99999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +++|..
T Consensus        70 i~tp~~   75 (387)
T 3moi_A           70 IASPHQ   75 (387)
T ss_dssp             ECSCGG
T ss_pred             EcCCcH
Confidence            999943

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.02  E-value=0.0083  Score=58.33  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=25.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhc--CCcEEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--~G~~V~~~d~  197 (394)
                      .+|||+|+|.||+.+.|.|...  -+++|.+.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            3799999999999999987433  3588876544

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.02  E-value=0.011  Score=57.61  Aligned_cols=103  Identities=20%  Similarity=0.196  Sum_probs=54.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEE-cC-chhhHHHHHHHhhhhhhhhc-CC------------CCccccccCCH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL-YQATRLEKFVTAYGQFLKAN-GE------------QPVTWKRASSM  230 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~-~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~l  230 (394)
                      .+|||+|+|+||+.++|.+...-+++|.+. |+ ....... +...|.+.--+. +.            ....+....++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a-~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~   82 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMV-YMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   82 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHH-HHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH-HHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence            489999999999999998754456887655 43 2222211 111121100000 00            00001112356


Q ss_pred             HHH-h--cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          231 DEV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       231 ~el-l--~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      +++ +  ..+|+|+.|+|......     ..-..++.|+..|.++-.
T Consensus        83 ~~l~~~~~~vDvV~eatg~~~~~e-----~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           83 SKIKWGDAGAEYVVESTGVFTTME-----KAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCSHH-----HHGGGGGGTCSEEEESSC
T ss_pred             HHCccccCCCCEEEECCCchhhHH-----HHHHHHhCCCeEEEeccC
Confidence            665 2  57999999998443321     222345668666666554

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.00  E-value=0.011  Score=59.30  Aligned_cols=70  Identities=11%  Similarity=0.108  Sum_probs=49.2

Q ss_pred             CeEEEEec----ChHHHHHHHHHHhcC--CcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--c
Q 016162          166 QTVGVIGA----GRIGSAYARMMVEGF--KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (394)
Q Consensus       166 ktvGIIGl----G~IG~~vA~~la~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~  236 (394)
                      .+|||||+    |.||+..++.+ +..  ++++ .++|++.... +.+.+.|       +...  ...+.++++++.  +
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l-~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~   89 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAI-LQLSSQFQITALYSPKIETS-IATIQRL-------KLSN--ATAFPTLESFASSST   89 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHH-HHTTTTEEEEEEECSSHHHH-HHHHHHT-------TCTT--CEEESSHHHHHHCSS
T ss_pred             CEEEEEcccCCCChHHHHHHHHH-HhcCCCeEEEEEEeCCHHHH-HHHHHHc-------CCCc--ceeeCCHHHHhcCCC
Confidence            58999999    99999999987 454  7776 4788887542 2222222       2211  123578999996  6


Q ss_pred             cCEEEEcCCC
Q 016162          237 ADVISLHPVL  246 (394)
Q Consensus       237 aDiV~l~lPl  246 (394)
                      .|+|++|+|.
T Consensus        90 vD~V~i~tp~   99 (438)
T 3btv_A           90 IDMIVIAIQV   99 (438)
T ss_dssp             CSEEEECSCH
T ss_pred             CCEEEEeCCc
Confidence            8999999993

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.98  E-value=0.074  Score=51.06  Aligned_cols=101  Identities=14%  Similarity=0.232  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|.||+++|= +++..+.+..+ ..||++|.+..|..-...+..       ..+  ..+..+....+++|.++.+|+|
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~-------~~~--~~g~~v~~~~d~~eav~~aDvv  220 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAA-RILDFKLQLSTPPGYALDAKL-------VDA--ESAPFYQVFDDPNEACKGADLV  220 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCGGGCCCGGG-------SCG--GGGGGEEECSSHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHH-HHcCCEEEEECCcccCCCHHH-------HHH--HcCCeEEEEcCHHHHhcCCCEE
Confidence            478999999985 56777777775 578999999887532111110       000  0112233457999999999999


Q ss_pred             EEcC----CCChh--------hhhcccHHHHhcCCCCcEEEEcC
Q 016162          241 SLHP----VLDKT--------TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       241 ~l~l----Plt~~--------t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ..-.    ....+        ...-++.+.++.+|++++|.-|.
T Consensus       221 yt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          221 TTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             EECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence            7643    11000        12447888888889998888774

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.98  E-value=0.029  Score=56.51  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEc--------Cchhh--HHHHHHHhh-------hhhhhhcCCCCcc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQAT--RLEKFVTAY-------GQFLKANGEQPVT  223 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d--------~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~  223 (394)
                      .++.|+||.|=|+|++|+..|+.| ...|++|++.+        +..-.  .+....+.-       .+...+.+.   .
T Consensus       231 ~~l~Gk~vaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~---~  306 (450)
T 4fcc_A          231 MGFEGMRVSVSGSGNVAQYAIEKA-MEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGL---V  306 (450)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTC---E
T ss_pred             CCcCCCEEEEeCCChHHHHHHHHH-HhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCc---E
Confidence            468999999999999999999997 78999998754        32110  111111000       000000010   0


Q ss_pred             ccccCCHHHH-hcccCEEEEcCCCChhhhhcccHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          224 WKRASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKE--AILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       224 ~~~~~~l~el-l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~g--ailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                         ..+.+++ --.||+.+=|.     +.+.|+.+....++..  .++++.+.+.+- .+| .+.|++..+
T Consensus       307 ---~~~~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t-~eA-~~iL~~rGI  367 (450)
T 4fcc_A          307 ---YLEGQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTT-IEA-TELFQQAGV  367 (450)
T ss_dssp             ---EEETCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBC-HHH-HHHHHHTTC
T ss_pred             ---EecCcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCC-HHH-HHHHHHCCC
Confidence               0111122 24689888774     3567888877777643  578888887754 333 245655544

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.98  E-value=0.022  Score=55.47  Aligned_cols=80  Identities=15%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhh-hhhhh--cC--CCCccccccCCHHHHhcccCEE
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYG-QFLKA--NG--EQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      +|||+|+|.||+.+++.+...-++++. +.|+..... ......++ .....  ..  ....+.....++++++.++|+|
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~-~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE-AFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH-HHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHH-HHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            799999999999999987433467765 445543221 11111100 00000  00  0000001123566777889999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999954

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.96  E-value=0.016  Score=54.66  Aligned_cols=39  Identities=18%  Similarity=0.295  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ++.|+++.|+| .|.||+.+++.| ...|++|++++|+...
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L-~~~G~~V~i~~R~~~~  155 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDK  155 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCHHH
Confidence            47889999999 999999999998 5789999999998654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.94  E-value=0.012  Score=57.61  Aligned_cols=94  Identities=14%  Similarity=0.185  Sum_probs=63.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHHhcccCEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (394)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++..+... ..+       ..|....  ....+   +.++....|+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~-~~~-------~lGa~~v--~~~~~~~~~~~~~~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVISTSPSKKEE-ALK-------NFGADSF--LVSRDQEQMQAAAGTLDGI  255 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGHHH-HHH-------TSCCSEE--EETTCHHHHHHTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-HHH-------hcCCceE--EeccCHHHHHHhhCCCCEE
Confidence            688999999999999999985 8999999999987654311 111       2232111  11122   33344568999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +-++.....     -...+..|+++..+|+++.
T Consensus       256 id~~g~~~~-----~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          256 IDTVSAVHP-----LLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             EECCSSCCC-----SHHHHHHEEEEEEEEECCC
T ss_pred             EECCCcHHH-----HHHHHHHHhcCCEEEEEcc
Confidence            998874321     2456777888999999875

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.94  E-value=0.13  Score=49.41  Aligned_cols=104  Identities=13%  Similarity=0.173  Sum_probs=65.8

Q ss_pred             ccC-CCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH---HHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          162 LLK-GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       162 ~l~-gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      .+. |.||+++|= +++..+.+..+ ..||++|.+..|..-...+..   .+++   ....|   ..+....++++.++.
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~---a~~~g---~~~~~~~d~~eav~~  214 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITA-AILGFEISIAMPKNYKISPEIWEFAMKQ---ALISG---AKISLGYDKFEALKD  214 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHH---HHHHT---CEEEEESCHHHHHTT
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHH---HHHcC---CeEEEEcCHHHHhcC
Confidence            477 999999985 56777777775 578999999887532111111   1111   01112   123345799999999


Q ss_pred             cCEEEEcC--CCCh--h--------hhhcccHHHHhcCCCCcEEEEcC
Q 016162          237 ADVISLHP--VLDK--T--------TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~l--Plt~--~--------t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|+|..-.  .-..  +        ...-++.+.++.+|++++|.-|.
T Consensus       215 aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l  262 (307)
T 3tpf_A          215 KDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL  262 (307)
T ss_dssp             CSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             CCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            99997654  0011  1        12346888888888888888774

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.94  E-value=0.012  Score=57.07  Aligned_cols=80  Identities=20%  Similarity=0.179  Sum_probs=46.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCc--------cccccCCHHHHhcc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPV--------TWKRASSMDEVLRE  236 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~~  236 (394)
                      .+|||+|+|.||+.+++.+...-++++. +.|++... .....+.++-..  .+....        ......++++++..
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~-~~~~~~~~g~~~--~~~~~~~v~~~~~~~~~v~~d~~~l~~~   79 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF-EAYRAKELGIPV--YAASEEFIPRFEKEGFEVAGTLNDLLEK   79 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH-HHHHHHHTTCCE--EESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHH-HHHHHHhcCccc--cccccccceeccCCceEEcCcHHHhccC
Confidence            3799999999999999987432366765 45654322 222211110000  000000        00123578899999


Q ss_pred             cCEEEEcCCCCh
Q 016162          237 ADVISLHPVLDK  248 (394)
Q Consensus       237 aDiV~l~lPlt~  248 (394)
                      +|+|+.|+|...
T Consensus        80 vDvV~~aTp~~~   91 (334)
T 2czc_A           80 VDIIVDATPGGI   91 (334)
T ss_dssp             CSEEEECCSTTH
T ss_pred             CCEEEECCCccc
Confidence            999999999543

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=95.93  E-value=0.079  Score=51.14  Aligned_cols=107  Identities=17%  Similarity=0.126  Sum_probs=64.7

Q ss_pred             ccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|.+|+++|=|+ +..+.+..+ ..||++|.+..|..-...+...+..-+.....|   ..+....++++.++.+|+|
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvv  227 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVL  227 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CcCCcEEEEECCchhhHHHHHHHH-HHcCCeEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhccCCEE
Confidence            48899999999854 666666664 578999999987543211111110000001112   1233457999999999999


Q ss_pred             EEcC----CCChhh--------hhcccHHHHhcCCCCcEEEEcC
Q 016162          241 SLHP----VLDKTT--------YHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       241 ~l~l----Plt~~t--------~~li~~~~l~~mk~gailIN~a  272 (394)
                      ..-+    ....+.        ..-++.+.++.+|++++|.-+.
T Consensus       228 y~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          228 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             EEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence            8832    211111        1346778888888888887763

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.92  E-value=0.014  Score=56.39  Aligned_cols=95  Identities=15%  Similarity=0.098  Sum_probs=61.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc------c
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (394)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++..+. + +...+       |..........++.+.+.      .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~-~-~~~~~-------Ga~~~~~~~~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVA-KASGAYPVIVSEPSDFRR-E-LAKKV-------GADYVINPFEEDVVKEVMDITDGNG  236 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHH-H-HHHHH-------TCSEEECTTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-H-HHHHh-------CCCEEECCCCcCHHHHHHHHcCCCC
Confidence            789999999999999999985 89999 999999886542 1 11122       221111111124433332      4


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+.++.. +++    -...+..++++..++.++.
T Consensus       237 ~D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          237 VDVFLEFSGA-PKA----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEEECSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCC-HHH----HHHHHHHHhcCCEEEEEcc
Confidence            7999988863 221    1445667788888888764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.91  E-value=0.023  Score=52.83  Aligned_cols=103  Identities=20%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh------------------hHHHHHHHhhhhhhhhcC-CC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANG-EQ  220 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~-~~  220 (394)
                      ..|++++|.|+|.|.+|..+++.|+ ..|. ++.++|+..-                  .+.+...+    .+.+.+ ..
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~----~l~~~np~~   98 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQ----RLTQLNPDI   98 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHH----HHHHHCTTS
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHH----HHHHHCCCC
Confidence            4689999999999999999999984 6676 7888876431                  01111111    111111 00


Q ss_pred             Ccccc----ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          221 PVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       221 ~~~~~----~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .+...    ...+++++++++|+|+.++. +.+++.++++.....   +.-+|..+
T Consensus        99 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1           99 QLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             EEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             EEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence            00000    01235678899999999987 678888888766553   33355543

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.90  E-value=0.013  Score=58.09  Aligned_cols=70  Identities=24%  Similarity=0.348  Sum_probs=47.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhc--------CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--------~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  235 (394)
                      .+|||||+|.||+.-++.+++.        -+++|. ++|+++... +++.+.|+       ..    ..+.|++++++ 
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a-~~~a~~~~-------~~----~~y~d~~~ll~~   94 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMA-ERHAAKLG-------AE----KAYGDWRELVND   94 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHH-HHHHHHHT-------CS----EEESSHHHHHHC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHH-HHHHHHcC-------CC----eEECCHHHHhcC
Confidence            3899999999999888776321        145655 568877543 33334442       11    23579999996 


Q ss_pred             -ccCEEEEcCCCC
Q 016162          236 -EADVISLHPVLD  247 (394)
Q Consensus       236 -~aDiV~l~lPlt  247 (394)
                       +.|+|++|+|..
T Consensus        95 ~~vD~V~I~tp~~  107 (412)
T 4gqa_A           95 PQVDVVDITSPNH  107 (412)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEECCCcH
Confidence             579999999943

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.88  E-value=0.027  Score=57.33  Aligned_cols=110  Identities=10%  Similarity=0.109  Sum_probs=65.1

Q ss_pred             CeEEEEec----ChHHHHHHHHHHhc-CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--cc
Q 016162          166 QTVGVIGA----GRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EA  237 (394)
Q Consensus       166 ktvGIIGl----G~IG~~vA~~la~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  237 (394)
                      .+|||||+    |.||+..++.+++. -+++|. ++|++.... +.+.+.|       +...  ...+.+++++++  +.
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a-~~~a~~~-------g~~~--~~~~~d~~ell~~~~v  109 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSS-LQTIEQL-------QLKH--ATGFDSLESFAQYKDI  109 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHH-HHHHHHT-------TCTT--CEEESCHHHHHHCTTC
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHH-HHHHHHc-------CCCc--ceeeCCHHHHhcCCCC
Confidence            58999999    99999999987432 377765 788887542 2222222       2211  123579999996  68


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCC-------cEEEEc-CCCcccCHHHHHHHHHcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKE-------AILVNC-SRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~g-------ailIN~-aRG~~vde~aL~~aL~~g~  290 (394)
                      |+|++|+|.....     +-....++.|       .+++.- ---.+-+.++|+++.++..
T Consensus       110 D~V~I~tp~~~H~-----~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g  165 (479)
T 2nvw_A          110 DMIVVSVKVPEHY-----EVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA  165 (479)
T ss_dssp             SEEEECSCHHHHH-----HHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred             CEEEEcCCcHHHH-----HHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence            9999999933221     1112223334       366653 1123344456666665543

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=95.86  E-value=0.015  Score=57.63  Aligned_cols=141  Identities=15%  Similarity=0.103  Sum_probs=86.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      -.++-|+|.|.+|+.+++.+ +.+|++|+++|++....                          + .+-+..+|-++...
T Consensus       204 ~~rL~IfGAGhva~ala~~a-~~lg~~V~v~D~R~~~~--------------------------~-~~~fp~a~~~~~~~  255 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQG-AFLGYRVTVCDARPVFA--------------------------T-TARFPTADEVVVDW  255 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHH-HHTTCEEEEEESCTTTS--------------------------C-TTTCSSSSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchhhc--------------------------c-cccCCCceEEEeCC
Confidence            35899999999999999985 89999999999876420                          1 12245666555554


Q ss_pred             CCChhhhhcccHHHHh---cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec--------cC---CCCCCC---C
Q 016162          245 VLDKTTYHLINKERLA---TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV--------FE---DEPYMK---P  307 (394)
Q Consensus       245 Plt~~t~~li~~~~l~---~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV--------~~---~EP~~~---~  307 (394)
                      |  .+   .+..  +.   .+.+++++|=+.++.-.|...|..+|+++...+.++=-        ++   .+=+.+   .
T Consensus       256 p--~~---~~~~--~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~iGSrrk~~~~~~rL~~~G~~~~~l~  328 (386)
T 2we8_A          256 P--HR---YLAA--QAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTEEELA  328 (386)
T ss_dssp             H--HH---HHHH--HHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEECCCHHHHHHHHHHHHHTTCCHHHHT
T ss_pred             h--HH---HHHh--hccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEEEecChhHHHHHHHHHHhCCCChHHhc
Confidence            4  11   1111  11   15678888888888888888888888876344444310        00   000000   1


Q ss_pred             ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 016162          308 GLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGY  347 (394)
Q Consensus       308 ~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~l~g~  347 (394)
                      .|. .|  |=. .||+.|++   .++..++.+|.+..+|.
T Consensus       329 Rl~-~P--IGL-dIGa~tPe---EIAvSI~AEiia~~~~~  361 (386)
T 2we8_A          329 RLS-SP--IGL-DLGGRTPE---ETAVSIAAEIIAKRWGG  361 (386)
T ss_dssp             TCB-CS--CSC-CCCCCSHH---HHHHHHHHHHHHHHTC-
T ss_pred             cEE-cC--CCC-CCCCCCHH---HHHHHHHHHHHHHHhcC
Confidence            111 12  112 28888884   55666667788877664

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=95.86  E-value=0.66  Score=45.23  Aligned_cols=103  Identities=12%  Similarity=0.130  Sum_probs=62.2

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHH---HhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV---TAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|.||+++|= +++..+.+..+ ..||++|.+..|..-...+.+.   +++   ....|   ..+....+++ .++.+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~---a~~~G---~~v~~~~d~~-av~~a  221 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKN---CEVSG---GSFLVTDDAS-SVEGA  221 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHH---HHHHS---CEEEEECCGG-GGTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHH---HHHcC---CeEEEECCHH-HHcCC
Confidence            588999999985 67778888776 6899999998875321111111   111   01112   1223356888 99999


Q ss_pred             CEEEEcC----CCC----hh----h--hhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHP----VLD----KT----T--YHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~l----Plt----~~----t--~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|..-+    ...    .+    .  ..-++.+.++.+|++++|.-|.
T Consensus       222 DVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          222 DFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             CEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            9998632    100    11    0  1335667777777777777663

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.85  E-value=0.0097  Score=57.20  Aligned_cols=102  Identities=22%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||.|.+|.+++..++. +..-++..+|...... +.....+.+.. ... ....... .+ .+.++.||+|+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~-~g~a~dl~~~~-~~~-~~~~v~~-~~-~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLA-QAHAEDILHAT-PFA-HPVWVWA-GS-YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH-HHHHHHHHTTG-GGS-CCCEEEE-CC-GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHHHHHhH-hhc-CCeEEEE-CC-HHHhCCCCEEEECC
Confidence            489999999999999988743 2335899999986432 22111221111 001 1112222 34 56699999999987


Q ss_pred             CCChhhhhc-------ccH-------HHHhcCCCCcEEEEcCC
Q 016162          245 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 Plt~~t~~l-------i~~-------~~l~~mk~gailIN~aR  273 (394)
                      +... ..++       .|.       +.+....|.+++++++.
T Consensus        76 g~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           76 GVAQ-RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             CCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCC-CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            6332 1111       111       12222368899999854

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.84  E-value=0.019  Score=55.25  Aligned_cols=96  Identities=14%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh----cccCE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----READV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~~aDi  239 (394)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++......  .       +..|..........++.+.+    ...|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~-------~~lGa~~~~d~~~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLEL--A-------KELGADLVVNPLKEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHHH--H-------HHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--H-------HHCCCCEEecCCCccHHHHHHHHhCCCCE
Confidence            478999999999999999985 8999999999987654211  1       11222111000112333322    46899


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |+.++.. +.+    -...++.++++..++.++..
T Consensus       234 vid~~g~-~~~----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          234 AVVTAVS-KPA----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             EEESSCC-HHH----HHHHHHHEEEEEEEEECCCC
T ss_pred             EEECCCC-HHH----HHHHHHHhhcCCEEEEeccc
Confidence            9988863 222    14567778889999988653

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.83  E-value=0.044  Score=53.45  Aligned_cols=69  Identities=14%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             CCeEEEEecChHHH-HHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEE
Q 016162          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~-~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (394)
                      -.+|||||+|.+|. ..+..+ ..-++++. ++|+++... +++.+.|       +.    ...+.++++++.+  .|+|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~-~~~~~~lvav~d~~~~~a-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V   92 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCL-LRAGARLAGFHEKDDALA-AEFSAVY-------AD----ARRIATAEEILEDENIGLI   92 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHH-HHTTCEEEEEECSCHHHH-HHHHHHS-------SS----CCEESCHHHHHTCTTCCEE
T ss_pred             CcEEEEECcCHHHHHHHHHHh-hcCCcEEEEEEcCCHHHH-HHHHHHc-------CC----CcccCCHHHHhcCCCCCEE
Confidence            35899999999995 466665 45688855 778887543 2333332       11    1235799999976  8999


Q ss_pred             EEcCCC
Q 016162          241 SLHPVL  246 (394)
Q Consensus       241 ~l~lPl  246 (394)
                      ++|+|.
T Consensus        93 ~I~tp~   98 (361)
T 3u3x_A           93 VSAAVS   98 (361)
T ss_dssp             EECCCH
T ss_pred             EEeCCh
Confidence            999993

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.82  E-value=0.0077  Score=58.76  Aligned_cols=67  Identities=15%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEE
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (394)
                      .+|||||+|.||+. .++.++..-++++. ++|++.... .   +.|       +    ....+.++++++..  .|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~---~~~-------~----~~~~~~~~~~ll~~~~vD~V~   70 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS-K---ERY-------P----QASIVRSFKELTEDPEIDLIV   70 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG-G---TTC-------T----TSEEESCSHHHHTCTTCCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH-H---HhC-------C----CCceECCHHHHhcCCCCCEEE
Confidence            48999999999997 67766333377775 678876431 1   111       1    12345789999987  89999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +|+|..
T Consensus        71 i~tp~~   76 (362)
T 3fhl_A           71 VNTPDN   76 (362)
T ss_dssp             ECSCGG
T ss_pred             EeCChH
Confidence            999943

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.81  E-value=0.027  Score=54.07  Aligned_cols=110  Identities=15%  Similarity=0.082  Sum_probs=69.7

Q ss_pred             cccCCCeEEEE-ec-ChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--
Q 016162          161 NLLKGQTVGVI-GA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (394)
Q Consensus       161 ~~l~gktvGII-Gl-G~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (394)
                      .-+..+++.|| |+ |+.|+.+++.+ +.+|++++ ..+|..... +              .  .+...+.+++|+..  
T Consensus         9 ~l~~~~siaVV~Gasg~~G~~~~~~l-~~~G~~~v~~VnP~~~g~-~--------------i--~G~~vy~sl~el~~~~   70 (305)
T 2fp4_A            9 LYVDKNTKVICQGFTGKQGTFHSQQA-LEYGTNLVGGTTPGKGGK-T--------------H--LGLPVFNTVKEAKEQT   70 (305)
T ss_dssp             GCCCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-E--------------E--TTEEEESSHHHHHHHH
T ss_pred             HHhCCCcEEEEECCCCCHHHHHHHHH-HHCCCcEEEEeCCCcCcc-e--------------E--CCeeeechHHHhhhcC
Confidence            34677889999 99 99999999997 67888843 566643110 0              0  11233568999988  


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-Ccc
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN-PMF  292 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g-~l~  292 (394)
                      ..|++++++|. +.....+.+-.=...   ..+|+.+-|-. -++..|.+.+++. .+.
T Consensus        71 ~vD~avI~vP~-~~~~~~~~e~i~~Gi---~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           71 GATASVIYVPP-PFAAAAINEAIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             CCCEEEECCCH-HHHHHHHHHHHHTTC---SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CCCEEEEecCH-HHHHHHHHHHHHCCC---CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            89999999993 233334332222222   24567777643 2344788888876 443

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.80  E-value=0.02  Score=54.47  Aligned_cols=98  Identities=12%  Similarity=0.086  Sum_probs=59.1

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|+| +|+||+.+++.+...-++++. ++|+......-.   ..+   +-.|....++....++++++..+|+|+-+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~---d~g---el~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDK---DAS---ILIGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTS---BGG---GGTTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---chH---HhhccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            4899999 999999999987545688865 557754221000   000   00111122333457999999999999977


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      .+  |+..   .+..-..++.|.-+|-...|
T Consensus        96 T~--p~a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A           96 SQ--PQAS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             SC--HHHH---HHHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHH---HHHHHHHHHcCCCEEEECCC
Confidence            75  4321   11222234566677766676

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.80  E-value=0.02  Score=56.56  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=49.9

Q ss_pred             CCeEEEEecCh---HHHHHHHHHHhcCCcEEE--EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---
Q 016162          165 GQTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---  236 (394)
Q Consensus       165 gktvGIIGlG~---IG~~vA~~la~~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  236 (394)
                      -.+|||||+|.   ||+..+..++..-+++++  ++|+++... +++.+.|       |...  ...+.|+++++..   
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~   81 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRG-SAFGEQL-------GVDS--ERCYADYLSMFEQEAR   81 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHH-HHHHHHT-------TCCG--GGBCSSHHHHHHHHTT
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHH-HHHHHHh-------CCCc--ceeeCCHHHHHhcccc
Confidence            45899999999   999988876333347776  479987643 2222222       2211  1235799999975   


Q ss_pred             ----cCEEEEcCCCC
Q 016162          237 ----ADVISLHPVLD  247 (394)
Q Consensus       237 ----aDiV~l~lPlt  247 (394)
                          .|+|++|+|..
T Consensus        82 ~~~~vD~V~i~tp~~   96 (398)
T 3dty_A           82 RADGIQAVSIATPNG   96 (398)
T ss_dssp             CTTCCSEEEEESCGG
T ss_pred             cCCCCCEEEECCCcH
Confidence                89999999944

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.80  E-value=0.0089  Score=58.31  Aligned_cols=95  Identities=14%  Similarity=0.159  Sum_probs=62.6

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch---hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh----
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----  234 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----  234 (394)
                      ++.|++|.|+|.|.||..+++.+ +.+|++|++.+++.   .+.  ++...+       |.... . .. ++.+.+    
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~--~~~~~~-------ga~~v-~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLF-RTYGLEVWMANRREPTEVEQ--TVIEET-------KTNYY-N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHH-HHHTCEEEEEESSCCCHHHH--HHHHHH-------TCEEE-E-CT-TCSHHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCccchHHH--HHHHHh-------CCcee-c-hH-HHHHHHHHhC
Confidence            56799999999999999999985 78999999999876   432  112222       21111 0 00 111111    


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ...|+|+.++......   + ...+..|+++..+|+++-
T Consensus       245 ~~~d~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          245 GKFDVIIDATGADVNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCEEEEEECCCCCTHH---H-HHHGGGEEEEEEEEECSC
T ss_pred             CCCCEEEECCCChHHH---H-HHHHHHHhcCCEEEEEec
Confidence            3589999998743222   1 455677889999999864

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=95.78  E-value=0.013  Score=55.69  Aligned_cols=103  Identities=21%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             CeEEEEecChHHHHHHHHHHh---cCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCE
Q 016162          166 QTVGVIGAGRIGSAYARMMVE---GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~---~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (394)
                      .+|||||+|.||+..++.+..   .-++++. ++|++...             +..+     .. +.+++++++  +.|+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a-------------~~~g-----~~-~~~~~ell~~~~vD~   68 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-------------SLDE-----VR-QISLEDALRSQEIDV   68 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-------------EETT-----EE-BCCHHHHHHCSSEEE
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH-------------HHcC-----CC-CCCHHHHhcCCCCCE
Confidence            489999999999999887632   2366765 56664311             0011     11 368999997  6899


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~l~  292 (394)
                      |++++|.....     +-....++.|. +++.- ---.+-+.++|.++.++..+.
T Consensus        69 V~i~tp~~~H~-----~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           69 AYICSESSSHE-----DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             EEECSCGGGHH-----HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEeCCcHhHH-----HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            99999943221     12223344454 56652 112334557777777655443

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.77  E-value=0.015  Score=51.23  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=59.2

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH-HH---h--cc
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EV---L--RE  236 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-el---l--~~  236 (394)
                      .|+++.|+| .|.||+.+++.+ +..|++|++.+++.... +. .       +..|..........+.. ++   .  ..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~-~-------~~~g~~~~~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR-EM-L-------SRLGVEYVGDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH-HH-H-------HTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-H-------HHcCCCEEeeCCcHHHHHHHHHHhCCCC
Confidence            578999999 699999999986 78899999999876542 11 1       11121111000111222 22   2  14


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      .|+|+.+..  .++    -...+..|+++..+|+++..
T Consensus       108 ~D~vi~~~g--~~~----~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          108 VDVVLNSLA--GEA----IQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             EEEEEECCC--THH----HHHHHHTEEEEEEEEECSCG
T ss_pred             CeEEEECCc--hHH----HHHHHHHhccCCEEEEEcCC
Confidence            788887764  221    25567788888888888653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.74  E-value=0.018  Score=58.70  Aligned_cols=99  Identities=18%  Similarity=0.323  Sum_probs=69.5

Q ss_pred             ccccCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC
Q 016162          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (394)
Q Consensus       160 g~~l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
                      |..+.|++|+|+|+-          .=...+++.| ...|++|.+|||....        +       ..  .  ....+
T Consensus       348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~g~~V~~~DP~~~~--------~-------~~--~--~~~~~  407 (478)
T 3g79_A          348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC-LKAGASVMVHDPYVVN--------Y-------PG--V--EISDN  407 (478)
T ss_dssp             TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH-HHHTCEEEEECSSCCC--------B-------TT--B--CEESC
T ss_pred             ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH-HHCCCEEEEECCCccc--------c-------cC--c--ceecC
Confidence            346899999999974          3367888987 6899999999998642        0       00  1  12368


Q ss_pred             HHHHhcccCEEEEcCCCChhhhhcccHHH-HhcCC-CCcEEEEcCCCcccCHHHH
Q 016162          230 MDEVLREADVISLHPVLDKTTYHLINKER-LATMK-KEAILVNCSRGPVIDEVAL  282 (394)
Q Consensus       230 l~ell~~aDiV~l~lPlt~~t~~li~~~~-l~~mk-~gailIN~aRG~~vde~aL  282 (394)
                      +++.++.||.|+++++ .++-+. ++-+. .+.|+ ++.+++|. |+ +.|.+.+
T Consensus       408 ~~~~~~~ad~vvi~t~-~~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~  458 (478)
T 3g79_A          408 LEEVVRNADAIVVLAG-HSAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF  458 (478)
T ss_dssp             HHHHHTTCSEEEECSC-CHHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHHhcCCEEEEecC-CHHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            8999999999999987 344333 45444 45677 47899995 54 4565444

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.74  E-value=0.013  Score=56.80  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=45.7

Q ss_pred             CeEEEEecChHHH-HHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCEEE
Q 016162          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~-~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (394)
                      .+|||||+|.||+ ..++.++..-+++|. ++|++...   ++.+.|+       ...  ...+.++++++..  .|+|+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~---~~a~~~~-------~~~--~~~~~~~~~ll~~~~~D~V~   70 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNE---KAAAPFK-------EKG--VNFTADLNELLTDPEIELIT   70 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCH---HHHHHHH-------TTT--CEEESCTHHHHSCTTCCEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHH---HHHHhhC-------CCC--CeEECCHHHHhcCCCCCEEE
Confidence            3799999999999 466665322377875 77877222   2222211       111  2235789999986  89999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +|+|..
T Consensus        71 i~tp~~   76 (349)
T 3i23_A           71 ICTPAH   76 (349)
T ss_dssp             ECSCGG
T ss_pred             EeCCcH
Confidence            999943

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.74  E-value=0.043  Score=54.20  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc------
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------  235 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  235 (394)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++..+.  ++.+.+       |..........++.+.+.      
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPSEVRR--NLAKEL-------GADHVIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHH--HHHHHH-------TCSEEECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHc-------CCCEEEcCCCCCHHHHHHHHhCCC
Confidence            3588999999999999999984 89999 999999877542  122222       322111111123333222      


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ..|+|+-++.....+...+..-....++++..++.++-
T Consensus       282 g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            48999999874322221111111233489999998864

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.73  E-value=0.045  Score=54.95  Aligned_cols=75  Identities=16%  Similarity=0.214  Sum_probs=48.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC----CHHHHhc--ccC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS----SMDEVLR--EAD  238 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~aD  238 (394)
                      .+|||||+|.||+..++.+++.-++++ .++|+++... +.+.+.+    ...|...  ...+.    +++++++  +.|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~-~~~a~~~----~~~g~~~--~~~~~~~~~~~~~ll~~~~vD   93 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMV-GRAQEIL----KKNGKKP--AKVFGNGNDDYKNMLKDKNID   93 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHH-HHHHHHH----HHTTCCC--CEEECSSTTTHHHHTTCTTCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHH----HhcCCCC--CceeccCCCCHHHHhcCCCCC
Confidence            489999999999999988743237776 4778887542 2211111    0112111  11245    8999997  589


Q ss_pred             EEEEcCCCC
Q 016162          239 VISLHPVLD  247 (394)
Q Consensus       239 iV~l~lPlt  247 (394)
                      +|++|+|..
T Consensus        94 ~V~i~tp~~  102 (444)
T 2ixa_A           94 AVFVSSPWE  102 (444)
T ss_dssp             EEEECCCGG
T ss_pred             EEEEcCCcH
Confidence            999999943

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.73  E-value=0.072  Score=51.88  Aligned_cols=95  Identities=19%  Similarity=0.112  Sum_probs=62.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCCHHHHhc-----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (394)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++..+..  +       ++..|........  ..++.+.+.     
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDKFE--K-------AKVFGATDFVNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--H-------HHHhCCceEEeccccchhHHHHHHHHhCC
Confidence            578999999999999999985 89999 8999998765421  1       1222321111111  124544443     


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~g-ailIN~aR  273 (394)
                      ..|+|+-++.. +++    -...+..++++ ..++.++-
T Consensus       262 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          262 GVDFSLECVGN-VGV----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHhhcCCcEEEEEcC
Confidence            48999998863 222    14567788998 88888764

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.69  E-value=0.051  Score=52.63  Aligned_cols=116  Identities=16%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CeEEEEecChHHHHHHHHHHhc--------CCcEEE-EEcCchhhH----HHHHHH-hhhhhhhhcCCCCccccccCCHH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATR----LEKFVT-AYGQFLKANGEQPVTWKRASSMD  231 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--------~G~~V~-~~d~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  231 (394)
                      .+|||||+|.||+.+++.+...        .+.+|. ++|++....    ..+... .+     ..+.    +....+++
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~-----~~~~----~~~~~d~~   73 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKR-----ETGM----LRDDAKAI   73 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHH-----HHSS----CSBCCCHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhc-----cCcc----ccCCCCHH
Confidence            3799999999999999987443        577766 456553221    011000 00     0000    00023899


Q ss_pred             HHhc--ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 016162          232 EVLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (394)
Q Consensus       232 ell~--~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~v-de~aL~~aL~~g~l  291 (394)
                      +++.  +.|+|+.|+|....+.. .-+-....++.|.-++...-+.+. +-+.|.++.++...
T Consensus        74 ~ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           74 EVVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             HHHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence            9985  48999999995533221 112345667888888876444442 45677777776654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.68  E-value=0.033  Score=55.99  Aligned_cols=87  Identities=13%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             ccCCCeEEEEecC----------hHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       162 ~l~gktvGIIGlG----------~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .+.|++|+|+|+-          .-...+++.| ... |++|.+|||.....                      ....++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L-~~~~g~~V~~~DP~~~~~----------------------~~~~~~  368 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELL-NQEPDIEVCAYDPHVELD----------------------FVEHDM  368 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHH-HHSTTCEEEEECSSCCCT----------------------TBCSTT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHH-HhhcCCEEEEECCCcccc----------------------cccCCH
Confidence            4789999999974          3468889998 677 99999999976431                      123578


Q ss_pred             HHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       231 ~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      ++.++.+|.|+++++ .++-+. ++-+.+..|+ +.+++|. |+-
T Consensus       369 ~~~~~~ad~vvi~t~-~~~f~~-~d~~~~~~~~-~~~i~D~-r~~  409 (431)
T 3ojo_A          369 SHAVKDASLVLILSD-HSEFKN-LSDSHFDKMK-HKVIFDT-KNV  409 (431)
T ss_dssp             HHHHTTCSEEEECSC-CGGGTS-CCGGGGTTCS-SCEEEES-SCC
T ss_pred             HHHHhCCCEEEEecC-CHHHhc-cCHHHHHhCC-CCEEEEC-CCC
Confidence            899999999999987 344333 3445556776 6789995 543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.68  E-value=0.091  Score=52.53  Aligned_cols=112  Identities=22%  Similarity=0.210  Sum_probs=71.4

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcC----------chhhHHHHHHHhhhhhhhhcCCCCccccccCC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDL----------YQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
                      .+++|+++.|.|+|++|+.+|+.| ...|++|+ +.|.          +.. .+.+..+..       +... .+ .. +
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L-~~~GakVVavsD~~G~i~dp~Gld~~-~l~~~~~~~-------g~v~-~~-~~-~  281 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHA-ERLGMRVVAVATSMGGMYAPEGLDVA-EVLSAYEAT-------GSLP-RL-DL-A  281 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHH-HHHHHHHHH-------SSCS-CC-CB-C
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEcCCCeEECCCCCCHH-HHHHHHHhh-------CCcc-ee-ec-c
Confidence            478999999999999999999997 68899998 5555          222 222222211       1100 00 01 1


Q ss_pred             HHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       230 l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      -++++ ..||+++-|..     .+.|+.+.-..++ -.+++..|.+.+- .+|- +.|++..+.
T Consensus       282 ~~e~~~~~~DVliP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A~-~~L~~~Gi~  337 (419)
T 3aoe_E          282 PEEVFGLEAEVLVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PEAE-AYLLGKGAL  337 (419)
T ss_dssp             TTTGGGSSCSEEEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HHHH-HHHHHHTCE
T ss_pred             chhhhccCceEEEeccc-----ccccccchHhhCC-ceEEEECCCCcCC-HHHH-HHHHHCCCE
Confidence            12333 47999998864     5567777777774 4589999998864 4444 455555443

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.67  E-value=0.024  Score=54.74  Aligned_cols=69  Identities=16%  Similarity=0.265  Sum_probs=49.1

Q ss_pred             CeEEEEecC-hHHHHHHHHHHhcC--CcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCE
Q 016162          166 QTVGVIGAG-RIGSAYARMMVEGF--KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (394)
Q Consensus       166 ktvGIIGlG-~IG~~vA~~la~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (394)
                      .+|||||+| .+|+..++.+ +..  ++++ .++|+++... +++.+.|       +.    ...+.|+++++.  +.|+
T Consensus        19 irvgiIG~G~~~g~~~~~~l-~~~~~~~~lvav~d~~~~~~-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~   85 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMV-------GN----PAVFDSYEELLESGLVDA   85 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHH-------SS----CEEESCHHHHHHSSCCSE
T ss_pred             eeEEEEecCHHHHHHHHHHH-HhCCCceEEEEEEcCCHHHH-HHHHHHh-------CC----CcccCCHHHHhcCCCCCE
Confidence            489999999 8999999887 454  5776 5788887542 3333333       11    123579999996  5899


Q ss_pred             EEEcCCCC
Q 016162          240 ISLHPVLD  247 (394)
Q Consensus       240 V~l~lPlt  247 (394)
                      |++|+|..
T Consensus        86 V~i~tp~~   93 (340)
T 1zh8_A           86 VDLTLPVE   93 (340)
T ss_dssp             EEECCCGG
T ss_pred             EEEeCCch
Confidence            99999943

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.67  E-value=0.069  Score=52.01  Aligned_cols=95  Identities=18%  Similarity=0.120  Sum_probs=61.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCCHHHHhc-----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (394)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++..+..  +       ++..|........  ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDKFA--K-------AKEVGATECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--H-------HHHhCCceEecccccchhHHHHHHHHhCC
Confidence            578999999999999999985 89999 8999998765421  1       1122321111011  123444333     


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~g-ailIN~aR  273 (394)
                      ..|+|+-++.. +++    -...++.++++ ..++.++-
T Consensus       261 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          261 GVDFSFEVIGR-LDT----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHHBCTTTCEEEECSC
T ss_pred             CCcEEEECCCC-HHH----HHHHHHHhhcCCcEEEEecc
Confidence            47999988863 222    14566778888 88888753

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=95.66  E-value=0.016  Score=55.94  Aligned_cols=62  Identities=13%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc---cC
Q 016162          164 KGQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---AD  238 (394)
Q Consensus       164 ~gktvGIIGlG~IG~-~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aD  238 (394)
                      +-.+|||||+|.||+ ..++.++..-+++|. ++|++...                  .  +...+.++++++..   .|
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------------------~--g~~~~~~~~~ll~~~~~vD   83 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------------------E--GVNSYTTIEAMLDAEPSID   83 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------------------T--TSEEESSHHHHHHHCTTCC
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------------------c--CCCccCCHHHHHhCCCCCC
Confidence            346899999999998 688877433477765 56776431                  0  12235799999876   89


Q ss_pred             EEEEcCC
Q 016162          239 VISLHPV  245 (394)
Q Consensus       239 iV~l~lP  245 (394)
                      +|++++|
T Consensus        84 ~V~i~tp   90 (330)
T 4ew6_A           84 AVSLCMP   90 (330)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9999999

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.66  E-value=0.02  Score=55.08  Aligned_cols=94  Identities=14%  Similarity=0.173  Sum_probs=61.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc----ccCE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EADV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~aDi  239 (394)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++.++..  +       +++.|..........++.+.+.    ..|+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYA-RAMGLRVAAVDIDDAKLN--L-------ARRLGAEVAVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHH-HHTTCEEEEEESCHHHHH--H-------HHHTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCCHHHHH--H-------HHHcCCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence            578999999999999999985 899999999998775431  1       1222322111111124433332    5788


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+.+... +++    -...+..++++..++.++
T Consensus       236 vid~~g~-~~~----~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          236 VLVTAVS-PKA----FSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EEESSCC-HHH----HHHHHHHEEEEEEEEECS
T ss_pred             EEEeCCC-HHH----HHHHHHHhccCCEEEEeC
Confidence            8888752 222    145567788888888875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.64  E-value=0.0069  Score=57.36  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ...+++|++|.|||.|.+|...++.| ...|++|+++++...
T Consensus         7 l~~~l~~k~VLVVGgG~va~rka~~L-l~~Ga~VtViap~~~   47 (274)
T 1kyq_A            7 LAHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EEECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEEC
T ss_pred             EEEEcCCCEEEEECCcHHHHHHHHHH-HhCCCEEEEEcCCCC
Confidence            34578999999999999999999998 799999999998764

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.63  E-value=0.011  Score=57.53  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~  197 (394)
                      +|||+|+|+||+.+.|.+...-.++|.+.+.
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~   33 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence            7999999999999999873333678776644

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.63  E-value=0.044  Score=57.11  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh------------------hHHHHHHHhhhhhhhhcC-CC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANG-EQ  220 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~-~~  220 (394)
                      ..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|...-                  .+.+...+    .+.+.. ..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~----~L~~iNP~v  397 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA----SLKRIFPLM  397 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHH----HHHHHCTTC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHH----HHHhHCCCc
Confidence            5789999999999999999999984 6676 7888875410                  01111111    122111 00


Q ss_pred             Ccccc-------------------ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          221 PVTWK-------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       221 ~~~~~-------------------~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .+...                   ....++++++++|+|+.|+. +.+++.+++..-...   +..+|+.+
T Consensus       398 ~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa  464 (598)
T 3vh1_A          398 DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  464 (598)
T ss_dssp             EEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence            01000                   01235678899999999986 677888887655442   44566654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.63  E-value=0.038  Score=52.00  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .++.||++.|.|. |.||+++|+.| ...|++|++.+++...
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAF-AKEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchH
Confidence            4689999999985 78999999998 5779999999987654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.62  E-value=0.018  Score=58.13  Aligned_cols=120  Identities=18%  Similarity=0.109  Sum_probs=74.0

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc-cCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV  240 (394)
                      ++.||+|.|||+|..|.++|+.| ...|++|.++|.......+ ..    +.++..|.   .+..-...++++.. +|+|
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l-~~~G~~V~~~D~~~~~~~~-~~----~~L~~~gi---~~~~g~~~~~~~~~~~d~v   76 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLL-AKLGAIVTVNDGKPFDENP-TA----QSLLEEGI---KVVCGSHPLELLDEDFCYM   76 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHH-HHTTCEEEEEESSCGGGCH-HH----HHHHHTTC---EEEESCCCGGGGGSCEEEE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEeCCcccCCh-HH----HHHHhCCC---EEEECCChHHhhcCCCCEE
Confidence            57899999999999999999987 7899999999986431100 00    11233332   12211233456676 8999


Q ss_pred             EEc--CCC-Chhhh-------hcccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          241 SLH--PVL-DKTTY-------HLINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       241 ~l~--lPl-t~~t~-------~li~~-~~l~~-mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      ++.  +|. +|+..       .++.+ +.+.. ++...+-|--+.|+.--..-|...|+...
T Consensus        77 v~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           77 IKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             EECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             EECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            876  332 22211       13443 33333 44444556667899888888888887644

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.61  E-value=0.082  Score=51.50  Aligned_cols=95  Identities=17%  Similarity=0.055  Sum_probs=61.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCCHHHHhc-----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (394)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++..+..  +       ++..|........  ..++.+.+.     
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKFP--K-------AKALGATDCLNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--H-------HHHhCCcEEEccccccchHHHHHHHHhCC
Confidence            578999999999999999984 89999 8999998765421  1       1222321111111  023444332     


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~g-ailIN~aR  273 (394)
                      ..|+|+-++.. +++    -...++.++++ ..++.++-
T Consensus       265 g~Dvvid~~G~-~~~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          265 GVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CccEEEECCCC-HHH----HHHHHHHhhcCCCEEEEECC
Confidence            47999988862 222    14567788888 88888754

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.61  E-value=0.02  Score=55.53  Aligned_cols=70  Identities=13%  Similarity=0.161  Sum_probs=46.2

Q ss_pred             CeEEEEecChHHHHHHHHHHh--c-----CCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--
Q 016162          166 QTVGVIGAGRIGSAYARMMVE--G-----FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~--~-----~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (394)
                      -+|||||+|.||+.-++.++.  .     .+++|. ++|+++... +.+.+.|+       ..    ..+.|++++++  
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a-~~~a~~~g-------~~----~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAV-RAAAGKLG-------WS----TTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHH-HHHHHHHT-------CS----EEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHH-HHHHHHcC-------CC----cccCCHHHHhcCC
Confidence            489999999999987766522  1     133544 678887543 33333332       11    23578999996  


Q ss_pred             ccCEEEEcCCCC
Q 016162          236 EADVISLHPVLD  247 (394)
Q Consensus       236 ~aDiV~l~lPlt  247 (394)
                      +.|+|++|+|..
T Consensus        75 ~iDaV~I~tP~~   86 (390)
T 4h3v_A           75 DVQLVDVCTPGD   86 (390)
T ss_dssp             TCSEEEECSCGG
T ss_pred             CCCEEEEeCChH
Confidence            479999999943

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.61  E-value=0.031  Score=54.77  Aligned_cols=95  Identities=12%  Similarity=0.238  Sum_probs=54.8

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEE
Q 016162          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ..+|+|+| +|.||+.+.+.|...-.+++.+........ ..+.+.|+.+   .+.  ....   ..+ ++.+..+|+|+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~~~---~~~v~~dl~---~~~-~~~~~~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFPHL---RAQKLPTLV---SVK-DADFSTVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCGGG---TTSCCCCCB---CGG-GCCGGGCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCchh---cCcccccce---ecc-hhHhcCCCEEE
Confidence            46899999 999999999998433345777765433211 1111112110   011  0111   122 45567899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+|....      .+.....+.|+.+|+.+-
T Consensus        88 ~atp~~~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           88 CCLPHGTT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             ECCCTTTH------HHHHHTSCTTCEEEECSS
T ss_pred             EcCCchhH------HHHHHHHhCCCEEEECCc
Confidence            99994332      222222277999999875

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.60  E-value=0.0061  Score=59.96  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+.+++|+|+|.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa-~~lG~~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSA-QKMGYKVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            46799999999999999999995 899999999998764

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.60  E-value=0.23  Score=48.04  Aligned_cols=107  Identities=16%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             cccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhh--HHHHH---HHhhhhhhhhcCCCCccccccCCHHHH
Q 016162          161 NLLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKF---VTAYGQFLKANGEQPVTWKRASSMDEV  233 (394)
Q Consensus       161 ~~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (394)
                      ..+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-.  ..+..   .+.+   ....+ .+..+....+++|.
T Consensus       157 ~~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~---~~~~~-~g~~v~~~~d~~ea  231 (328)
T 3grf_A          157 NGFKGIKFAYCGDSMNNVTYDLMRGC-ALLGMECHVCCPDHKDFKPIKEVIDECEEI---IAKHG-TGGSIKIFHDCKKG  231 (328)
T ss_dssp             TTGGGCCEEEESCCSSHHHHHHHHHH-HHHTCEEEEECCSSGGGSCCHHHHHHHHHH---HHHHT-CCCEEEEESSHHHH
T ss_pred             cccCCcEEEEeCCCCcchHHHHHHHH-HHcCCEEEEECChHhhhCCCHHHHHHHHHH---Hhhcc-CCCeEEEEcCHHHH
Confidence            36899999999976  7888888876 5789999998875322  11111   1111   01100 11223345799999


Q ss_pred             hcccCEEEEc----CCCChh---------hhhcccHHHHhcCCCCcEEEEcC
Q 016162          234 LREADVISLH----PVLDKT---------TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       234 l~~aDiV~l~----lPlt~~---------t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ++.+|+|..-    +....+         ...-++.+.++.+|++++|.-+.
T Consensus       232 v~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          232 CEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             HTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            9999999763    220111         12347888899999999888874

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.58  E-value=0.0055  Score=59.71  Aligned_cols=79  Identities=18%  Similarity=0.182  Sum_probs=44.1

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhhH--HHHHH--Hhhhhhhh---hcCCCCccccccCCHHHHhcccC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATR--LEKFV--TAYGQFLK---ANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~~--~~~~~--~~~~~~~~---~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +|||+|+|.||+.+++.+...-++++.+. |+.+...  ...+.  +.|+.+..   ........+  ..++++++..+|
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v--~~~~~~~~~~vD   80 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEV--AGTVDDMLDEAD   80 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCC--CEEHHHHHHTCS
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEE--cCCHHHHhcCCC
Confidence            79999999999999998743357887554 5442211  11100  00000000   000000001  125778888999


Q ss_pred             EEEEcCCCC
Q 016162          239 VISLHPVLD  247 (394)
Q Consensus       239 iV~l~lPlt  247 (394)
                      +|+.|+|..
T Consensus        81 vV~~atp~~   89 (337)
T 1cf2_P           81 IVIDCTPEG   89 (337)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCch
Confidence            999999954

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=95.55  E-value=0.0069  Score=55.12  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=45.0

Q ss_pred             CeEEEEecChHHHHHHHHH-HhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMM-VEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~l-a~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l  242 (394)
                      ++++|+|.|++|+.+++.+ ... |+++. ++|.++.....           .  ..+..+....+++++++ +.|+|++
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~-----------~--i~gv~V~~~~dl~ell~~~ID~ViI  146 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGR-----------P--VRGGVIEHVDLLPQRVPGRIEIALL  146 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTC-----------E--ETTEEEEEGGGHHHHSTTTCCEEEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhh-----------h--hcCCeeecHHhHHHHHHcCCCEEEE
Confidence            5799999999999999852 134 78765 56766543110           0  01122223568999886 5899999


Q ss_pred             cCCC
Q 016162          243 HPVL  246 (394)
Q Consensus       243 ~lPl  246 (394)
                      |+|.
T Consensus       147 A~Ps  150 (211)
T 2dt5_A          147 TVPR  150 (211)
T ss_dssp             CSCH
T ss_pred             eCCc
Confidence            9993

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.55  E-value=0.034  Score=54.37  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-------
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-------  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-------  235 (394)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++..+..  +.+.       .|..........++.+.+.       
T Consensus       182 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~a~~-------lGa~~vi~~~~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLA-RLAGATTVILSTRQATKRR--LAEE-------VGATATVDPSAGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHHH--HHHH-------HTCSEEECTTSSCHHHHHHSTTSSST
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHH-------cCCCEEECCCCcCHHHHHHhhhhccC
Confidence            478999999999999999984 89999 8999998765421  2222       2322111111234544444       


Q ss_pred             -ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          236 -EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       236 -~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                       ..|+|+-++.. +++    -...+..++++..++.++-
T Consensus       252 gg~Dvvid~~G~-~~~----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          252 GGVDVVIECAGV-AET----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEECCCC-HHH----HHHHHHHhccCCEEEEEec
Confidence             37999888752 222    1455677888888888864

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=95.55  E-value=0.19  Score=48.55  Aligned_cols=107  Identities=15%  Similarity=0.092  Sum_probs=65.7

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.|.||+++|= +++..+.+..+ ..+|++|.+..|..-...+...+...+.....|   ..+....+++|.++.+|+|
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~eav~~aDvv  229 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGC-AKVGMSIAVATPEGFTPDPAVSARASEIAGRTG---AEVQILRDPFEAARGAHIL  229 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhcCCCEE
Confidence            478999999985 67778887775 578999999877532111111100000001112   1233457999999999999


Q ss_pred             EEcCCCCh----h--------hhhcccHHHHhcCCCCcEEEEcC
Q 016162          241 SLHPVLDK----T--------TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       241 ~l~lPlt~----~--------t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ..-.=...    +        ...-++.+.++.+|++++|.-|.
T Consensus       230 yt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          230 YTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             EECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             EEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            65431110    0        11347888888889998888774

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.54  E-value=0.019  Score=54.91  Aligned_cols=67  Identities=10%  Similarity=0.052  Sum_probs=46.9

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh---------
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (394)
                      .++||||+ |.||+..++.+ +..+.++. ++|++....  ...+.|       .    ....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~~~-------~----~~~~~~~~~~ll~~~~~l~~~   69 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVG--LVDSFF-------P----EAEFFTEPEAFEAYLEDLRDR   69 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGGTC-------T----TCEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHhhC-------C----CCceeCCHHHHHHHhhhhccc
Confidence            58999999 78999999987 56688754 778876542  110100       1    122357888888         


Q ss_pred             -cccCEEEEcCCC
Q 016162          235 -READVISLHPVL  246 (394)
Q Consensus       235 -~~aDiV~l~lPl  246 (394)
                       .+.|+|++|+|.
T Consensus        70 ~~~vD~V~I~tP~   82 (312)
T 3o9z_A           70 GEGVDYLSIASPN   82 (312)
T ss_dssp             TCCCSEEEECSCG
T ss_pred             CCCCcEEEECCCc
Confidence             679999999994

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.53  E-value=0.019  Score=55.80  Aligned_cols=96  Identities=18%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccC-CHHHHh-cccCEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVL-READVIS  241 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell-~~aDiV~  241 (394)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++..+..  +..       ..|.......... ++.+.+ ...|+|+
T Consensus       179 ~g~~VlV~GaG~vG~~~~qla-k~~Ga~Vi~~~~~~~~~~--~~~-------~lGa~~v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKRE--DAM-------KMGADHYIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTHH--HHH-------HHTCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHH--HHH-------HcCCCEEEcCcCchHHHHHhhcCCCEEE
Confidence            478999999999999999985 889999999998765421  111       1232111111112 333333 4789999


Q ss_pred             EcCCCC-hhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLD-KTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt-~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      -++..+ +.+   + ...++.++++..++.++.
T Consensus       249 d~~g~~~~~~---~-~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          249 VCASSLTDID---F-NIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ECCSCSTTCC---T-TTGGGGEEEEEEEEECCC
T ss_pred             ECCCCCcHHH---H-HHHHHHhcCCCEEEEecC
Confidence            998742 111   1 345677889999998865

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.52  E-value=0.16  Score=49.69  Aligned_cols=107  Identities=17%  Similarity=0.173  Sum_probs=69.3

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-...+...+..-......|.   .+....+++|.++.+|+
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~-~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~---~v~~~~d~~eav~~aDv  248 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTG-AILGVNIHIVAPKALFPTEETQNIAKGFAEKSGA---KLVITDDLDEGLKGSNV  248 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTC---CEEEESCHHHHHTTCSE
T ss_pred             CcCCeEEEEECCCccchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEeCHHHHhcCCCE
Confidence            4889999999986  9999999986 5789999999875432111111100000011121   22335799999999999


Q ss_pred             EEEcCC-CC----hh------hhhcccHHHHhcCC---CCcEEEEcC
Q 016162          240 ISLHPV-LD----KT------TYHLINKERLATMK---KEAILVNCS  272 (394)
Q Consensus       240 V~l~lP-lt----~~------t~~li~~~~l~~mk---~gailIN~a  272 (394)
                      |..-.= .-    ..      ...-++.+.++.+|   ++++|.-|.
T Consensus       249 vytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          249 VYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             EEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             EEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence            976321 10    11      12456888898888   899988874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.52  E-value=0.081  Score=51.48  Aligned_cols=95  Identities=15%  Similarity=0.018  Sum_probs=62.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc--CCHHHHhc-----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLR-----  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~-----  235 (394)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++..+..  +       +++.|.........  .++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDKFP--K-------AIELGATECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGHH--H-------HHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHHH--H-------HHHcCCcEEEecccccchHHHHHHHHhCC
Confidence            578999999999999999984 88999 8999998765421  1       12223221111110  23444332     


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~g-ailIN~aR  273 (394)
                      ..|+|+-++.. +++    -...+..++++ ..++.++-
T Consensus       261 g~Dvvid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          261 GVDYAVECAGR-IET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHHhcCCCEEEEEcc
Confidence            47999998863 222    14567788998 88888763

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.50  E-value=0.1  Score=50.29  Aligned_cols=95  Identities=15%  Similarity=0.069  Sum_probs=61.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCCHHHH---h----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEV---L----  234 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~el---l----  234 (394)
                      .|++|.|+|.|.+|...++.+ +.+|++|++.+++..+..  +.       +..|........  ....+++   .    
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~~-------~~lGa~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRLE--VA-------KNCGADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHH--HH-------HHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEcCCHHHHH--HH-------HHhCCCEEEcCcccccHHHHHHHHhcccc
Confidence            478999999999999999985 899999999998765421  11       122321111001  1112232   2    


Q ss_pred             -cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       235 -~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                       ...|+|+-++.. +.+    -...+..++++..++.++.
T Consensus       238 g~g~D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          238 GDLPNVTIDCSGN-EKC----ITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SSCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCCCCEEEECCCC-HHH----HHHHHHHHhcCCEEEEEec
Confidence             258999998863 222    1455777899999998864

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.47  E-value=0.054  Score=56.58  Aligned_cols=102  Identities=17%  Similarity=0.236  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh------------------hHHHHHHHhhhhhhhhcCCCC
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (394)
                      ..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|...-                  .+.+...    +.+.+..- .
T Consensus       322 ekL~~arVLIVGaGGLGs~vA~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa----~~L~~iNP-~  395 (615)
T 4gsl_A          322 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA----ASLKRIFP-L  395 (615)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHH----HHHHHHCT-T
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHH----HHHHhhCC-C
Confidence            4689999999999999999999985 5666 7888887541                  0111111    11221111 1


Q ss_pred             ccccc---------------------cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          222 VTWKR---------------------ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       222 ~~~~~---------------------~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +.+..                     ...++++++++|+|+.|+- +.+++.+++..-..   .+..+|+.+
T Consensus       396 V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tD-n~~tR~~ln~~c~~---~~~PlI~aa  463 (615)
T 4gsl_A          396 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA  463 (615)
T ss_dssp             CEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-SGGGTHHHHHHHHH---TTCEEEEEE
T ss_pred             cEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCC-CHHHHHHHHHHHHH---cCCeEEEEE
Confidence            11111                     1135678999999999985 77888888775553   344577754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.46  E-value=0.075  Score=51.66  Aligned_cols=95  Identities=17%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCCHHHHhc-----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (394)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++..+..  +.+.+       |........  ..++.+.+.     
T Consensus       190 ~g~~VlV~GaG~vG~~avqla-~~~Ga~~Vi~~~~~~~~~~--~~~~l-------Ga~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDKFA--RAKEF-------GATECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGHH--HHHHH-------TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--HHHHc-------CCceEeccccccccHHHHHHHHhCC
Confidence            578999999999999999985 88999 8999998765421  11122       221111011  023444333     


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~g-ailIN~aR  273 (394)
                      ..|+|+-++.. +.+    -...+..++++ ..++.++-
T Consensus       260 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          260 GVDYSFECIGN-VKV----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCc-HHH----HHHHHHhhccCCcEEEEEec
Confidence            47999998863 222    14567788998 88888764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.42  E-value=0.014  Score=52.22  Aligned_cols=99  Identities=9%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchh-hHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~  241 (394)
                      |++.|.| .|.||+.+++.|++.-|++|++.+|+.. .. +....      ...+....  ......++++++..+|+|+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~-~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRI-PPEII------DHERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHS-CHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccc-hhhcc------CCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            6799999 6999999999984268999999999875 31 11100      00010000  0111234567788999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCC--CcEEEEcCCCc
Q 016162          242 LHPVLDKTTYHLINKERLATMKK--EAILVNCSRGP  275 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~--gailIN~aRG~  275 (394)
                      .+..... ..   ....+..|++  ...||++|...
T Consensus        79 ~~ag~~n-~~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           79 VGAMESG-SD---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             ESCCCCH-HH---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EcCCCCC-hh---HHHHHHHHHhcCCCeEEEEeece
Confidence            9886431 11   2333444432  23677776544

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.41  E-value=0.015  Score=55.90  Aligned_cols=102  Identities=18%  Similarity=0.267  Sum_probs=57.7

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      +|+|||.|.+|..+|..++. .|. +|..+|...... +.....+.+.....+ .........+. +.++.||+|+++.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~-~~l~el~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM-RGYDDLLLIARTPGKP-QGEALDLAHAAAELG-VDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HTCSCEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHh-CCCCEEEEEcCChhhH-HHHHHHHHHhhhhcC-CCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            58999999999999987743 355 799999986432 221111111100011 11112222455 57999999999965


Q ss_pred             CChhhhh------------ccc--HHHHhcCCCCcEEEEcCC
Q 016162          246 LDKTTYH------------LIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       246 lt~~t~~------------li~--~~~l~~mk~gailIN~aR  273 (394)
                      ... ..+            ++.  .+.+....|++++|+++.
T Consensus        77 ~~~-k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           77 IGR-KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CCC-CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            322 111            110  112222358999999855

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.38  E-value=0.012  Score=57.51  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=52.3

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh---cCCCCccccccCCHHHHhc-ccCEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA---NGEQPVTWKRASSMDEVLR-EADVI  240 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ell~-~aDiV  240 (394)
                      .+|+|+| +|.||+.+++.|...-+++|.+..++.......+.+.|......   .+.....+.. .+++++++ .+|+|
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DvV   87 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIP-TDPKHEEFEDVDIV   87 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEE-SCTTSGGGTTCCEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEe-CCHHHHhcCCCCEE
Confidence            4899999 99999999999743224687766322111100111111100000   0000011111 24555556 89999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++|+|... +..+. ...   .+.|+.+|+.+-
T Consensus        88 ~~atp~~~-~~~~a-~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           88 FSALPSDL-AKKFE-PEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             EECCCHHH-HHHHH-HHH---HHTTCEEEECCS
T ss_pred             EECCCchH-HHHHH-HHH---HHCCCEEEECCc
Confidence            99998322 22221 222   246888998864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.37  E-value=0.077  Score=47.00  Aligned_cols=96  Identities=14%  Similarity=0.097  Sum_probs=56.4

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l  242 (394)
                      ++|.|+|. |.||+.+++.| ...|.+|++.+|+.....+.         ...+....  .... .+. +.+..+|+|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~~D~~d-~~~-~~~~~~d~vi~   68 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEA-RRRGHEVLAVVRDPQKAADR---------LGATVATLVKEPLV-LTE-ADLDSVDAVVD   68 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHH---------TCTTSEEEECCGGG-CCH-HHHTTCSEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHH-HHCCCEEEEEEecccccccc---------cCCCceEEeccccc-ccH-hhcccCCEEEE
Confidence            36899987 99999999998 56799999999987543210         00111000  0111 122 67889999998


Q ss_pred             cCCCC--hh--hhhc-ccHHHHhcCC-CCcEEEEcCC
Q 016162          243 HPVLD--KT--TYHL-INKERLATMK-KEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt--~~--t~~l-i~~~~l~~mk-~gailIN~aR  273 (394)
                      +....  +.  ...+ .....+..|+ .|..+|.+|.
T Consensus        69 ~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           69 ALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             CCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            87542  11  0111 1133455553 3466777765

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.37  E-value=0.021  Score=55.13  Aligned_cols=91  Identities=18%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++..+..  +       ++..|.....    .+.+++.+..|+|+-+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~v~----~~~~~~~~~~D~vid~  241 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARNEHKKQ--D-------ALSMGVKHFY----TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSSSTTHH--H-------HHHTTCSEEE----SSGGGCCSCEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHH--H-------HHhcCCCeec----CCHHHHhcCCCEEEEC
Confidence            588999999999999999985 899999999998775432  1       1222322111    2223333378999988


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +.....     -...+..++++..++.++.
T Consensus       242 ~g~~~~-----~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          242 IPTHYD-----LKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             CCSCCC-----HHHHHTTEEEEEEEEECCC
T ss_pred             CCcHHH-----HHHHHHHHhcCCEEEEECC
Confidence            873311     2456778899999998864

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.35  E-value=0.23  Score=49.99  Aligned_cols=168  Identities=16%  Similarity=0.177  Sum_probs=109.5

Q ss_pred             CCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhc
Q 016162          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (394)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~  187 (394)
                      ..|+|.|+--   .-+|=-+++-+++.+|-                     .|+.|.+.++.|.|.|.-|-.+|+.+ ..
T Consensus       186 ~~ipvFnDD~---qGTA~V~lAgllnAlki---------------------~gk~l~d~riV~~GAGaAGigia~ll-~~  240 (487)
T 3nv9_A          186 CDIPVWHDDQ---QGTASVTLAGLLNALKL---------------------VKKDIHECRMVFIGAGSSNTTCLRLI-VT  240 (487)
T ss_dssp             CSSCEEETTT---HHHHHHHHHHHHHHHHH---------------------HTCCGGGCCEEEECCSHHHHHHHHHH-HH
T ss_pred             ccCCcccccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHH-HH
Confidence            4799999764   45677788888888772                     34678999999999999999999998 67


Q ss_pred             CCc---EEEEEcCch----h-hHHHH-----HHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcc
Q 016162          188 FKM---NLIYYDLYQ----A-TRLEK-----FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (394)
Q Consensus       188 ~G~---~V~~~d~~~----~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li  254 (394)
                      .|.   +++.+|+..    . .....     +..+|.   +..+.     ....+|.|+++.+|+++=+--  . ..+.|
T Consensus       241 ~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A---~~~n~-----~~~~~L~eav~~adVlIG~S~--~-~pg~f  309 (487)
T 3nv9_A          241 AGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEIC---ETTNP-----SKFGSIAEACVGADVLISLST--P-GPGVV  309 (487)
T ss_dssp             TTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHH---HHSCT-----TCCCSHHHHHTTCSEEEECCC--S-SCCCC
T ss_pred             cCCCcccEEEEeccccccCCcchhhhhcccHHHHHHH---Hhccc-----ccCCCHHHHHhcCCEEEEecc--c-CCCCC
Confidence            898   799999752    1 11111     111121   11110     023589999999998764421  1 14789


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCC
Q 016162          255 NKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (394)
Q Consensus       255 ~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (394)
                      .++.++.|.+..++.-.|.... +..++.   .+.|+...|.    -.-+.|    -+-.|+++-|-|+
T Consensus       310 t~e~V~~Ma~~PIIFaLSNPtpEi~pe~A---~~~G~aIvAT----Grsd~P----nQ~NN~liFPGI~  367 (487)
T 3nv9_A          310 KAEWIKSMGEKPIVFCCANPVPEIYPYEA---KEAGAYIVAT----GRGDFP----NQVNNSVGFPGIL  367 (487)
T ss_dssp             CHHHHHTSCSSCEEEECCSSSCSSCHHHH---HHTTCSEEEE----SCTTSS----SBCCGGGTHHHHH
T ss_pred             CHHHHHhhcCCCEEEECCCCCccCCHHHH---HHhCCEEEEE----CCCCCc----ccCcceeEcchhh
Confidence            9999999999999999997654 222333   3356522221    111222    2456888888664

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.34  E-value=0.072  Score=51.99  Aligned_cols=95  Identities=18%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc--cCCHHHHhc-----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (394)
                      .|.+|.|+|.|.||...++.+ +..|+ +|++.|++..+..  +       +++.|........  ..++.+.+.     
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a-~~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGA-KTAGASRIIGIDIDSKKYE--T-------AKKFGVNEFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHHTCSCEEEECSCTTHHH--H-------HHTTTCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--H-------HHHcCCcEEEccccCchhHHHHHHHhcCC
Confidence            588999999999999999985 89999 8999998775431  1       1222322211111  134444433     


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~g-ailIN~aR  273 (394)
                      ..|+|+-++.. +++    -...+..++++ ..++.++-
T Consensus       263 g~D~vid~~g~-~~~----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          263 GVDYSFECIGN-VSV----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHhhccCCEEEEEcc
Confidence            38999988862 222    14567778886 88888753

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.34  E-value=0.047  Score=53.36  Aligned_cols=71  Identities=13%  Similarity=0.143  Sum_probs=46.4

Q ss_pred             CeEEEEe-cChHHHH-HH----HHHHhcCCcEE----------EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC
Q 016162          166 QTVGVIG-AGRIGSA-YA----RMMVEGFKMNL----------IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (394)
Q Consensus       166 ktvGIIG-lG~IG~~-vA----~~la~~~G~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
                      .+||||| +|.||+. .+    +.+...-+..+          .++|++.... +.+.+.|       +..    ..+.|
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a-~~~a~~~-------~~~----~~~~~   74 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKV-EALAKRF-------NIA----RWTTD   74 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHH-HHHHHHT-------TCC----CEESC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHH-HHHHHHh-------CCC----cccCC
Confidence            4799999 9999998 66    55533333332          3888887653 2222222       211    13579


Q ss_pred             HHHHhcc--cCEEEEcCCCCh
Q 016162          230 MDEVLRE--ADVISLHPVLDK  248 (394)
Q Consensus       230 l~ell~~--aDiV~l~lPlt~  248 (394)
                      +++++.+  .|+|++|+|...
T Consensus        75 ~~~ll~~~~iD~V~i~tp~~~   95 (383)
T 3oqb_A           75 LDAALADKNDTMFFDAATTQA   95 (383)
T ss_dssp             HHHHHHCSSCCEEEECSCSSS
T ss_pred             HHHHhcCCCCCEEEECCCchH
Confidence            9999976  899999999543

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.32  E-value=0.039  Score=54.05  Aligned_cols=30  Identities=27%  Similarity=0.418  Sum_probs=24.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcC-CcEEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYD  196 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d  196 (394)
                      .+|||+|+|.||+.+.|.| ... +++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l-~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRAC-MERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHH-HcCCCeEEEEec
Confidence            3899999999999999987 444 67877665

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.32  E-value=0.049  Score=52.76  Aligned_cols=95  Identities=18%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc---cCCH-HHHh----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSM-DEVL----  234 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l-~ell----  234 (394)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++..+..  +       ++..|........   ..++ +++.    
T Consensus       171 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLS--K-------AKEIGADLVLQISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHH--H-------HHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--H-------HHHhCCCEEEcCcccccchHHHHHHHHhC
Confidence            478999999999999999984 89999 9999998765421  1       1222321110000   0111 1221    


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ...|+|+-++.. +.+    -...+..++++..++.++-
T Consensus       241 ~g~D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          241 CKPEVTIECTGA-EAS----IQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             SCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC-hHH----HHHHHHHhcCCCEEEEEec
Confidence            248999999863 222    1456778899999998874

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.31  E-value=0.023  Score=54.48  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=46.5

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh---------
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (394)
                      .++||||+ |.||+..++.+ +..+.+++ ++|++....  ...+.|       .    ....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~~~-------~----~~~~~~~~~~ll~~~~~l~~~   69 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVG--IIDSIS-------P----QSEFFTEFEFFLDHASNLKRD   69 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGGTC-------T----TCEEESSHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHhhC-------C----CCcEECCHHHHHHhhhhhhhc
Confidence            58999999 78999999987 55688654 678776532  110100       1    122356888887         


Q ss_pred             --cccCEEEEcCCC
Q 016162          235 --READVISLHPVL  246 (394)
Q Consensus       235 --~~aDiV~l~lPl  246 (394)
                        .+.|+|++++|.
T Consensus        70 ~~~~vD~V~I~tP~   83 (318)
T 3oa2_A           70 SATALDYVSICSPN   83 (318)
T ss_dssp             TTTSCCEEEECSCG
T ss_pred             cCCCCcEEEECCCc
Confidence              568999999994

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=95.30  E-value=0.22  Score=48.31  Aligned_cols=103  Identities=13%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHH---HHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|.||+++|= +++..+.+..+ ..||++|.+..|..-...+..   .+++   ....|   ..+....+++ .++.+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~---a~~~g---~~v~~~~d~~-av~~a  243 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKN---CEVSG---GSFLVTDDAS-SVEGA  243 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHH---HHHHC---CEEEEECCGG-GGTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHH---HHHcC---CEEEEECChh-HHcCC
Confidence            588999999985 67778888775 689999999887532111111   1111   01112   1223356888 99999


Q ss_pred             CEEEEcC--CC--Ch----h----h--hhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHP--VL--DK----T----T--YHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~l--Pl--t~----~----t--~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|..-+  ..  ..    +    .  ..-++.+.++.+|++++|.-|.
T Consensus       244 Dvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          244 DFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             SEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             CEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            9998632  10  01    1    0  1345677777777777777663

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.27  E-value=0.021  Score=55.57  Aligned_cols=31  Identities=29%  Similarity=0.527  Sum_probs=24.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d  196 (394)
                      .+|||+|+|+||+.++|.+...-+++|.+..
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            3899999999999999987432367776554

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.26  E-value=0.02  Score=56.04  Aligned_cols=93  Identities=18%  Similarity=0.278  Sum_probs=61.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHHhcccCEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (394)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++..+..  +...       .|.... . ...+   .+++....|+|
T Consensus       194 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~Vi~~~~~~~~~~--~a~~-------lGa~~v-i-~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKRE--AAKA-------LGADEV-V-NSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--HHHH-------HTCSEE-E-ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHH-------cCCcEE-e-ccccHHHHHHhhcCCCEE
Confidence            478999999999999999984 899999999998765421  1111       222111 0 1112   22233568999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +-++.....     -...++.++++..++.++.
T Consensus       262 id~~g~~~~-----~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          262 LNTVAAPHN-----LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EECCSSCCC-----HHHHHTTEEEEEEEEECCC
T ss_pred             EECCCCHHH-----HHHHHHHhccCCEEEEecc
Confidence            988863211     1456777888888988864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.26  E-value=0.12  Score=52.52  Aligned_cols=110  Identities=14%  Similarity=0.096  Sum_probs=69.7

Q ss_pred             ccccCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhh---hhhcCCCCccccc
Q 016162          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQPVTWKR  226 (394)
Q Consensus       160 g~~l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  226 (394)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||.......   +.|+..   +.....   ....
T Consensus       323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~---~~~~~~~~~~~~~~~---~~~~  395 (478)
T 2y0c_A          323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAEL-LSRGARIAAYDPVAQEEAR---RVIALDLADHPSWLE---RLSF  395 (478)
T ss_dssp             CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECTTTHHHHH---HHHHHHTTTCHHHHT---TEEE
T ss_pred             cccCCCCEEEEEecccCCCCCccccChHHHHHHHH-HHCCCEEEEECCCccHHHH---Hhhcccccccccccc---ceee
Confidence            346899999999984          3567888987 7899999999998643211   122100   000000   0122


Q ss_pred             cCCHHHHhcccCEEEEcCCCChhhhhcccHHHH-hcCCCCcEEEEcCCCcccCHHH
Q 016162          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVA  281 (394)
Q Consensus       227 ~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l-~~mk~gailIN~aRG~~vde~a  281 (394)
                      ..++++.++.||.|++++.- ++-+. ++-+.+ ..|+ +.+++|. |+ +.|.+.
T Consensus       396 ~~~~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~~  446 (478)
T 2y0c_A          396 VDDEAQAARDADALVIVTEW-KIFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPET  446 (478)
T ss_dssp             CSSHHHHTTTCSEEEECSCC-GGGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHHH
T ss_pred             cCCHHHHHhCCCEEEEecCC-hHhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHHH
Confidence            45788999999999999873 34333 355544 4565 4789997 43 456543

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.25  E-value=0.057  Score=51.87  Aligned_cols=103  Identities=17%  Similarity=0.311  Sum_probs=66.6

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|.+|+++|=   |++..+.+..+ ..| |++|.+..|..-.-.+...+    .++..|.   .+....+++|.++.+
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g~---~~~~~~d~~eav~~a  222 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKGI---AWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTTC---CEEECSCGGGTTTTC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCcccccCHHHHH----HHHHcCC---eEEEEcCHHHHhcCC
Confidence            478999999998   59999999986 688 99999998754321111111    1222231   233347899999999


Q ss_pred             CEEEEcCCCCh----hh------hhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHPVLDK----TT------YHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~lPlt~----~t------~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|..-.=...    +.      ..-++.+.++.+||+++|.-|.
T Consensus       223 Dvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             SEEEECC-----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             CEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            99976532111    11      2345777777777787777763

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.24  E-value=0.024  Score=55.29  Aligned_cols=31  Identities=26%  Similarity=0.216  Sum_probs=24.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d  196 (394)
                      .+|||+|+|+||+.+++.+...-+++|.+..
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~   33 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVT   33 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            3899999999999999987433368876553

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.24  E-value=0.037  Score=53.12  Aligned_cols=102  Identities=17%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+.|.+|+++|=   |++..+.+..+ ..||++|.+..|..-...+...+    .++..|.   .+....++++.++.+|
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~----~~~~~g~---~~~~~~d~~eav~~aD  223 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVE----ELREKGM---KVVETTTLEDVIGKLD  223 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHH----HHHHTTC---CEEEESCTHHHHTTCS
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHH-HHCCCEEEEECCccccCCHHHHH----HHHHcCC---eEEEEcCHHHHhcCCC
Confidence            478999999998   48999999986 68999999998854321111111    1222221   2233468999999999


Q ss_pred             EEEEcCCCCh-----hh------hhcccHHHHhcCCCCcEEEEc
Q 016162          239 VISLHPVLDK-----TT------YHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       239 iV~l~lPlt~-----~t------~~li~~~~l~~mk~gailIN~  271 (394)
                      +|..-.=..+     +.      ..-++.+.++.+||+++|.-|
T Consensus       224 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~  267 (308)
T 1ml4_A          224 VLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHP  267 (308)
T ss_dssp             EEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECC
T ss_pred             EEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECC
Confidence            9976542111     11      133566677777777777665

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.22  E-value=0.11  Score=45.00  Aligned_cols=72  Identities=11%  Similarity=0.054  Sum_probs=47.2

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEEE
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~  241 (394)
                      ++++.|+|. |.||+.+++.| ...|.+|++.+|+......         ....+....  ......++.++++.+|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l-~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HHCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999997 99999999998 5679999999997653110         000010000  0111124567788899998


Q ss_pred             EcCCC
Q 016162          242 LHPVL  246 (394)
Q Consensus       242 l~lPl  246 (394)
                      .+...
T Consensus        73 ~~a~~   77 (206)
T 1hdo_A           73 VLLGT   77 (206)
T ss_dssp             ECCCC
T ss_pred             ECccC
Confidence            88764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.21  E-value=0.041  Score=53.58  Aligned_cols=95  Identities=9%  Similarity=0.035  Sum_probs=60.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----cc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (394)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++..+..  +.+.       .|..........++.+.+.     ..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~~Vi~~~~~~~~~~--~a~~-------lGa~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRLE--LAKQ-------LGATHVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHHH--HHHH-------HTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHHH--HHHH-------cCCCEEecCCccCHHHHHHHhcCCCC
Confidence            578999999999999999984 88999 7999998765421  1111       2221111111123333332     37


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|+-++.. +++    -...+..++++..++.++-
T Consensus       260 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          260 NFALESTGS-PEI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEECSCC-HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEECCCC-HHH----HHHHHHHHhcCCEEEEeCC
Confidence            888888762 222    1456777888888888754

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.21  E-value=0.042  Score=52.93  Aligned_cols=94  Identities=15%  Similarity=0.084  Sum_probs=60.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----cc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (394)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++..+...         ++.. ..........++.+.+.     ..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~~~---------~~~l-a~~v~~~~~~~~~~~~~~~~~~g~  232 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVV-RASGAGPILVSDPNPYRLAF---------ARPY-ADRLVNPLEEDLLEVVRRVTGSGV  232 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHHGG---------GTTT-CSEEECTTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHHH---------HHHh-HHhccCcCccCHHHHHHHhcCCCC
Confidence            789999999999999999985 89999 99999987654211         1111 10000011124444333     57


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|+-++.. +++    -...+..++++..++.++.
T Consensus       233 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          233 EVLLEFSGN-EAA----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEEECSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC-HHH----HHHHHHHHhcCCEEEEEec
Confidence            999888863 222    1455677888888888764

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.21  E-value=0.028  Score=55.23  Aligned_cols=134  Identities=13%  Similarity=0.145  Sum_probs=82.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      -.++.|+|.|.+|+.+++.+ +.+|++|+++|+++....                           .+-+..+|-++...
T Consensus       199 ~~~L~I~GaGhva~aLa~la-~~lgf~V~v~D~R~~~~~---------------------------~~~fp~a~~v~~~~  250 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFA-SNVGFYTVVTDWRPNQCE---------------------------KHFFPDADEIIVDF  250 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHH-HHHTEEEEEEESCGGGGC---------------------------GGGCTTCSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCeEEEECCCccccc---------------------------cccCCCceEEecCC
Confidence            34799999999999999985 799999999999864310                           01134455554443


Q ss_pred             CCChhhhhcccHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee--------ccCCCCCCCCccccCCc
Q 016162          245 VLDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD--------VFEDEPYMKPGLSEMKN  314 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~--mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD--------V~~~EP~~~~~L~~~~n  314 (394)
                      |          ++.+..  +.+++++|=+.++.-.|...|..+|++ ...+.++=        ..+..-.       ..+
T Consensus       251 p----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~iGSr~R~~rl~~~g~~-------~~r  312 (362)
T 3on5_A          251 P----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGILGSKERTRRLLQNRKP-------PDH  312 (362)
T ss_dssp             H----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEESSCHHHHHHHHTSCCC-------CTT
T ss_pred             H----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEEeCCHHHHHHHHhcCCc-------Hhh
Confidence            3          111222  456677777777777777777777765 34444321        1111100       011


Q ss_pred             eEEcC---CCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 016162          315 AIVVP---HIASASKWTREGMATLAALNVLGKIKGYP  348 (394)
Q Consensus       315 vilTP---Hia~~t~~~~~~~~~~~~~ni~~~l~g~~  348 (394)
                       +-+|   -|++.|+   +.++..++.+|.+..+|.+
T Consensus       313 -i~~PIGL~Iga~tP---~EIAvSI~AEiia~~~~~~  345 (362)
T 3on5_A          313 -LYSPVGLSIDAQGP---EEIAISIVAQLIQLIRSRK  345 (362)
T ss_dssp             -EESSCSCCSCCCSH---HHHHHHHHHHHHHHHHHSC
T ss_pred             -eECCCCCCCCCCCH---HHHHHHHHHHHHHHHhCCC
Confidence             3333   2778888   4566667788888888874

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.20  E-value=0.13  Score=51.55  Aligned_cols=120  Identities=18%  Similarity=0.270  Sum_probs=70.1

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCc---------hhhHHHHHHHhhhh--h--hhhcCCCCcccc
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQ--F--LKANGEQPVTWK  225 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~---------~~~~~~~~~~~~~~--~--~~~~~~~~~~~~  225 (394)
                      |.++.|+++.|.|+|++|+.+|+.| ...|++|+ +.|.+         ....+.++.+..+.  .  ....+. .   .
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L-~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~-~---~  279 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDN-A---E  279 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSC-C---C
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccC-c---e
Confidence            3479999999999999999999997 78999998 44441         11111111111000  0  000000 0   0


Q ss_pred             ccCCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       226 ~~~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ...+.++++ ..||+++-|.-     .+.|+++....++ -.+++..+.+.+- .+|- +.|.+..+.
T Consensus       280 ~~~~~~~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a~-~~l~~~Gi~  339 (421)
T 1v9l_A          280 FVKNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPTT-PEAE-RILYERGVV  339 (421)
T ss_dssp             CCSSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCBC-HHHH-HHHHTTTCE
T ss_pred             EeCCchhhhcCCccEEEecCc-----CCccchhhHHHcC-ceEEEecCCCcCC-HHHH-HHHHHCCCE
Confidence            110234444 47999988853     4556777666664 4578888888864 4443 556655543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.15  E-value=0.025  Score=53.45  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=59.2

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc-CCHHHHhcccCEEE
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLREADVIS  241 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDiV~  241 (394)
                      .|++|.|+|. |.||...++.+ +..|++|++.+++..+...         ++..|......... .++.+.+...|+|+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~---------~~~~ga~~~~~~~~~~~~~~~~~~~d~vi  194 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLAL---------PLALGAEEAATYAEVPERAKAWGGLDLVL  194 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSHH---------HHHTTCSEEEEGGGHHHHHHHTTSEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHhcCCCEEEECCcchhHHHHhcCceEEE
Confidence            4789999998 99999999985 7999999999987654211         11122211110011 12333346789888


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      - +.. + +    -...++.++++..++.++.
T Consensus       195 d-~g~-~-~----~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          195 E-VRG-K-E----VEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             E-CSC-T-T----HHHHHTTEEEEEEEEEC--
T ss_pred             E-CCH-H-H----HHHHHHhhccCCEEEEEeC
Confidence            8 753 2 1    2566778888888888753

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.07  E-value=0.028  Score=54.54  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=25.3

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      +|||+|+|+||+.+.|.+...-.++|.+.+..
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            79999999999999998743446787766543

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.07  E-value=0.11  Score=50.05  Aligned_cols=103  Identities=16%  Similarity=0.154  Sum_probs=59.6

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcCCc-------EEEEEcCc----hhhHHHHHHHhhhhhhhhcC-CCCccccccCCHH
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLY----QATRLEKFVTAYGQFLKANG-EQPVTWKRASSMD  231 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~G~-------~V~~~d~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  231 (394)
                      .++|.|+|. |.||+.++..| ..-|+       +|..+|+.    ... .+.....    +.+.. ..........++.
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L-~~~~~~~~~~~~ev~l~Di~~~~~~~~-~~g~~~d----l~~~~~~~~~~i~~~~~~~   78 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRI-ANGDMLGKDQPVILQLLEIPNEKAQKA-LQGVMME----IDDCAFPLLAGMTAHADPM   78 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHH-HTTTTTCTTCCEEEEEECCSCHHHHHH-HHHHHHH----HHTTTCTTEEEEEEESSHH
T ss_pred             CCEEEEECCCChHHHHHHHHH-HhCCCcCCCCCCEEEEEcCCCcccccc-chhhHHH----HhhhcccccCcEEEecCcH
Confidence            358999997 99999999887 44554       89999987    321 1111111    11110 0111122236788


Q ss_pred             HHhcccCEEEEcCCCCh--h-hh-hc--cc----H---HHHhcC-CCCcEEEEcCC
Q 016162          232 EVLREADVISLHPVLDK--T-TY-HL--IN----K---ERLATM-KKEAILVNCSR  273 (394)
Q Consensus       232 ell~~aDiV~l~lPlt~--~-t~-~l--i~----~---~~l~~m-k~gailIN~aR  273 (394)
                      +.++.||+|+++.....  . ++ .+  .|    .   +.+... ++.+++|+++.
T Consensus        79 ~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           79 TAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            99999999998754221  1 11 01  11    1   122333 47889999974

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.04  E-value=0.039  Score=53.66  Aligned_cols=94  Identities=14%  Similarity=0.021  Sum_probs=58.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh----c--cc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--EA  237 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~--~a  237 (394)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++..+..  +.+.+       |..........++.+.+    .  ..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~~~~l-------Ga~~vi~~~~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSSSREKLD--RAFAL-------GADHGINRLEEDWVERVYALTGDRGA  258 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEESCHHHHH--HHHHH-------TCSEEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCchhHH--HHHHc-------CCCEEEcCCcccHHHHHHHHhCCCCc
Confidence            588999999999999999985 899999999998765421  11222       22111111112332222    1  57


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|+-++. . ++    -...+..++++..++.++.
T Consensus       259 D~vid~~g-~-~~----~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          259 DHILEIAG-G-AG----LGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EEEEEETT-S-SC----HHHHHHHEEEEEEEEEECC
T ss_pred             eEEEECCC-h-HH----HHHHHHHhhcCCEEEEEec
Confidence            88887775 1 11    2445666777777777753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.03  E-value=0.028  Score=53.86  Aligned_cols=96  Identities=19%  Similarity=0.113  Sum_probs=62.1

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----cc
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (394)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++..+. +...       +..|..........++.+.+.     ..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEKC-RFLV-------EELGFDGAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHH-------HTTCCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH-------HHcCCCEEEECCCHHHHHHHHHhcCCCc
Confidence            5889999999 99999999985 79999999999876542 1110       122221111111123433332     47


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |+|+.+...  .    .-...+..++++..++.++..
T Consensus       220 d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          220 DVFFDNVGG--E----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             EEEEESSCH--H----HHHHHHTTEEEEEEEEECCCG
T ss_pred             eEEEECCCc--c----hHHHHHHHHhhCCEEEEEeec
Confidence            888888752  1    125567788899899888653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.03  E-value=0.044  Score=52.97  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=59.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc------c
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (394)
                      .|.+|.|+|.|.||...++.+ +..|+ +|++.|++..+. + +.+       +.|..........++.+.+.      .
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~-~-~~~-------~lGa~~vi~~~~~~~~~~v~~~t~g~g  235 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSRKHCC-D-IAL-------EYGATDIINYKNGDIVEQILKATDGKG  235 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCCHHHH-H-HHH-------HHTCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH-H-HHH-------HhCCceEEcCCCcCHHHHHHHHcCCCC
Confidence            478999999999999999984 89999 899999876542 1 112       22322111111223333221      4


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .|+|+-++... ++    -...+..++++..++.++
T Consensus       236 ~D~v~d~~g~~-~~----~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          236 VDKVVIAGGDV-HT----FAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEEECSSCT-TH----HHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCCh-HH----HHHHHHHHhcCCEEEEec
Confidence            78888877632 21    145566778888888775

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.02  E-value=0.032  Score=54.05  Aligned_cols=94  Identities=15%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             CCCeEEEE-ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----cc
Q 016162          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (394)
Q Consensus       164 ~gktvGII-GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (394)
                      .|++|.|+ |.|.||..+++.+ +..|++|++.+++..+...  ...       .|..........++.+.+.     ..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~~~-------lGa~~~~~~~~~~~~~~~~~~~~~g~  236 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKCEA--CER-------LGAKRGINYRSEDFAAVIKAETGQGV  236 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH--HHH-------HTCSEEEETTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--HHh-------cCCCEEEeCCchHHHHHHHHHhCCCc
Confidence            58899999 6899999999985 8999999999988754321  111       2221111111223433332     48


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|+-|... +     .-...+..++++..++.++.
T Consensus       237 Dvvid~~g~-~-----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          237 DIILDMIGA-A-----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEESCCG-G-----GHHHHHHTEEEEEEEEECCC
T ss_pred             eEEEECCCH-H-----HHHHHHHHhccCCEEEEEEe
Confidence            999888762 1     12456778888888888864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.02  E-value=0.047  Score=52.65  Aligned_cols=95  Identities=14%  Similarity=0.165  Sum_probs=62.2

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc-cccccCCHHHHhc-----c
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR-----E  236 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~-----~  236 (394)
                      .|+++.|+|. |.||..+++.+ +..|++|++.+++.... + ...       ..|.... ......++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~~-~-~~~-------~~g~~~~~d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGKE-E-LFR-------SIGGEVFIDFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTHH-H-HHH-------HTTCCEEEETTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHHH-H-HHH-------HcCCceEEecCccHhHHHHHHHHhCCC
Confidence            4789999999 89999999986 78999999999876542 1 111       1222111 1111234554443     4


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+.+.... .+    -...+..|+++..+|+++.
T Consensus       239 ~D~vi~~~g~~-~~----~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          239 AHGVINVSVSE-AA----IEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             EEEEEECSSCH-HH----HHHHTTSEEEEEEEEECCC
T ss_pred             CCEEEECCCcH-HH----HHHHHHHHhcCCEEEEEeC
Confidence            79998887621 21    2456677888889998865

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.02  E-value=0.057  Score=51.61  Aligned_cols=94  Identities=18%  Similarity=0.110  Sum_probs=61.0

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc-CCHHHHhc-----c
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----E  236 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~-----~  236 (394)
                      .|+++.|+|. |.||..+++.+ +..|++|++.+++.... +. .+.       .|......... .++.+.+.     .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~-~~~-------~g~~~~~d~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKI-AY-LKQ-------IGFDAAFNYKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HHH-------TTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHh-------cCCcEEEecCCHHHHHHHHHHHhCCC
Confidence            5889999998 99999999986 78999999999876442 11 111       12111100111 34444432     4


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+.+...  .+    -...+..++++..++.++-
T Consensus       215 ~d~vi~~~g~--~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG--EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh--HH----HHHHHHHHhcCCEEEEEec
Confidence            7888888752  21    2556778888888888864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.99  E-value=0.037  Score=53.34  Aligned_cols=93  Identities=24%  Similarity=0.232  Sum_probs=59.7

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc------c
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (394)
                      .|++|.|+|. |.||...++.+ +.+|++|++.+++..+..  ...       ..|........ .++.+.+.      .
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~-------~~ga~~v~~~~-~~~~~~v~~~~~~~g  227 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIA-KGMGAKVIAVVNRTAATE--FVK-------SVGADIVLPLE-EGWAKAVREATGGAG  227 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--HHH-------HHTCSEEEESS-TTHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--HHH-------hcCCcEEecCc-hhHHHHHHHHhCCCC
Confidence            5889999998 99999999985 899999999998765431  111       12221111111 33333221      4


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-|+.. +     .-...+..++++..++.++.
T Consensus       228 ~Dvvid~~g~-~-----~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          228 VDMVVDPIGG-P-----AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             EEEEEESCC--------CHHHHHHTEEEEEEEEEC--
T ss_pred             ceEEEECCch-h-----HHHHHHHhhcCCCEEEEEEc
Confidence            7888888763 1     12556778888888888753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.97  E-value=0.072  Score=46.95  Aligned_cols=97  Identities=10%  Similarity=0.079  Sum_probs=57.6

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l  242 (394)
                      ++|.|+| .|.||+.+++.| ...|.+|++.+|+.......         . .+....  ..... +. +.+..+|+|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~---------~-~~~~~~~~D~~d~-~~-~~~~~~d~vi~   67 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEA-KNRGHEVTAIVRNAGKITQT---------H-KDINILQKDIFDL-TL-SDLSDQNVVVD   67 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCSHHHHHH---------C-SSSEEEECCGGGC-CH-HHHTTCSEEEE
T ss_pred             CeEEEEcCCchhHHHHHHHH-HhCCCEEEEEEcCchhhhhc---------c-CCCeEEeccccCh-hh-hhhcCCCEEEE
Confidence            4789999 599999999998 57799999999987542210         0 011000  01111 12 67889999998


Q ss_pred             cCCCChhhhhc---ccHHHHhcCCC--CcEEEEcCCCc
Q 016162          243 HPVLDKTTYHL---INKERLATMKK--EAILVNCSRGP  275 (394)
Q Consensus       243 ~lPlt~~t~~l---i~~~~l~~mk~--gailIN~aRG~  275 (394)
                      +..........   .....+..|++  ...+|.+|...
T Consensus        68 ~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           68 AYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             CCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             CCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecce
Confidence            88654332110   11234444443  35677766543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.97  E-value=0.058  Score=50.26  Aligned_cols=41  Identities=27%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhH
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~  202 (394)
                      ..+.||++.|.|. |.||+++|+.| ...|++|++.+++....
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~   68 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRL-ALEGAAVALTYVNAAER   68 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCCHHH
Confidence            3689999999985 68999999998 47899999886655443

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=94.95  E-value=0.039  Score=53.76  Aligned_cols=95  Identities=16%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|||+| .|.||+.+.+.|...=++++.+........ ..+.+.|.. +  .+.....   ..++++ +..+|+|++|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g-~~~~~~~~~-~--~g~~~~~---~~~~~~-~~~vDvV~~a~   76 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG-EPVHFVHPN-L--RGRTNLK---FVPPEK-LEPADILVLAL   76 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT-SBGGGTCGG-G--TTTCCCB---CBCGGG-CCCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC-chhHHhCch-h--cCccccc---ccchhH-hcCCCEEEEcC
Confidence            5899999 899999999997433345776654432211 111111110 0  0101111   223334 57899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |.... ..+. ...   ++.|+.+|+.+-
T Consensus        77 g~~~s-~~~a-~~~---~~aG~~VId~Sa  100 (345)
T 2ozp_A           77 PHGVF-AREF-DRY---SALAPVLVDLSA  100 (345)
T ss_dssp             CTTHH-HHTH-HHH---HTTCSEEEECSS
T ss_pred             CcHHH-HHHH-HHH---HHCCCEEEEcCc
Confidence            95433 2221 222   366888999875

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.93  E-value=0.059  Score=50.80  Aligned_cols=39  Identities=15%  Similarity=0.190  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       161 ~~l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ..+.||++.|.|.+   .||+.+|+.| ...|++|++.+++..
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~l-a~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAV-CAQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHH-HHTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHH-HHCCCEEEEEeCChH
Confidence            46899999999986   8999999998 578999999998854

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.92  E-value=0.032  Score=55.44  Aligned_cols=100  Identities=11%  Similarity=0.115  Sum_probs=58.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC---cEEEEEcCchhhHHHHHHHhhhhhhhhcCCC--CccccccCCHHHHhcc--cC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLRE--AD  238 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~--aD  238 (394)
                      ++|+|+|.|.||+.+++.|+ ..|   .+|.++||+..+. ++..+.+.... .....  ........++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~-~~g~~~~~V~v~~r~~~~~-~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMA-MNREVFSHITLASRTLSKC-QEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TCTTTCCEEEEEESCHHHH-HHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCceEEEEEECCHHHH-HHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            58999999999999999984 555   4999999987653 22222221100 00000  0011112357788887  89


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+.+.|.... ..++ .   ..++.|.-+++++-
T Consensus        79 vVin~ag~~~~-~~v~-~---a~l~~g~~vvD~a~  108 (405)
T 4ina_A           79 IVLNIALPYQD-LTIM-E---ACLRTGVPYLDTAN  108 (405)
T ss_dssp             EEEECSCGGGH-HHHH-H---HHHHHTCCEEESSC
T ss_pred             EEEECCCcccC-hHHH-H---HHHHhCCCEEEecC
Confidence            99999883221 1111 1   22345666777644

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=94.92  E-value=0.56  Score=45.84  Aligned_cols=108  Identities=13%  Similarity=0.126  Sum_probs=66.5

Q ss_pred             cccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          161 NLLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       161 ~~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      ..+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-.-.+...+..-......|   ..+....+++|.++.+|
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~v~~~~d~~eav~~aD  252 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGA-AKMGMDIRLVGPQAYWPDEELVAACQAIAKQTG---GKITLTENVAEGVQGCD  252 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHH-HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCS
T ss_pred             CCcCceEEEecCCCCcccchHHHHHH-HhcCceEEEeCCcccCCCHHHHHHHHHHHHHcC---CcceeccCHHHHhccCc
Confidence            46899999999954  7999998886 689999999987532111111110000011111   12334578999999999


Q ss_pred             EEEEcCCC----Chhh---------hhcccHHHHhc-CCCCcEEEEcC
Q 016162          239 VISLHPVL----DKTT---------YHLINKERLAT-MKKEAILVNCS  272 (394)
Q Consensus       239 iV~l~lPl----t~~t---------~~li~~~~l~~-mk~gailIN~a  272 (394)
                      +|..-.=.    .++.         ..-++.+.++. .||+++|.-|.
T Consensus       253 vvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          253 FLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             EEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            99743211    1111         12367788875 47888888773

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.90  E-value=0.12  Score=49.43  Aligned_cols=105  Identities=22%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc---cCCHHHHhcccCE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADV  239 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDi  239 (394)
                      .+|+|||. |.+|..++..|+ ..|  -+|..+|+.......   ..    +.+. ........   ..++++.++.||+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~-~~~~~~ev~L~Di~~~~~~a---~d----L~~~-~~~~~l~~~~~t~d~~~a~~~aDv   71 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGVA---AD----LSHI-ETRATVKGYLGPEQLPDCLKGCDV   71 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHHH---HH----HTTS-SSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCcEEEEEeCCccHHHH---HH----Hhcc-CcCceEEEecCCCCHHHHhCCCCE
Confidence            37999998 999999999874 445  689999987622111   11    1111 11111221   1468888999999


Q ss_pred             EEEcCCC--Chh-hh-hc--cc----H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 016162          240 ISLHPVL--DKT-TY-HL--IN----K---ERLATMKKEAILVNCSRGPVIDEVA  281 (394)
Q Consensus       240 V~l~lPl--t~~-t~-~l--i~----~---~~l~~mk~gailIN~aRG~~vde~a  281 (394)
                      |+++...  .+. ++ .+  .|    .   +.+....|++++|+++  .++|.-.
T Consensus        72 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~  124 (314)
T 1mld_A           72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI  124 (314)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred             EEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence            9998642  221 10 11  01    1   1222234788999974  4566544

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.87  E-value=0.024  Score=51.40  Aligned_cols=102  Identities=11%  Similarity=0.115  Sum_probs=60.7

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccC
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREAD  238 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aD  238 (394)
                      ...+++.|.| .|.||+.+++.| ...| .+|++++|+.....+         +...+....  ......+++++++.+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHK---------PYPTNSQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCS---------SCCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhcc---------cccCCcEEEEecCCCHHHHHHHhcCCC
Confidence            4468999999 799999999998 5778 899999998754211         000000000  0111234667889999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCC--CcEEEEcCCCcc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKK--EAILVNCSRGPV  276 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~--gailIN~aRG~~  276 (394)
                      +|+.+.......  ......+..|++  ...||++|....
T Consensus        91 ~vv~~a~~~~~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           91 IVYANLTGEDLD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             EEEEECCSTTHH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             EEEEcCCCCchh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            999887643221  111233444432  246888877443

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=94.84  E-value=0.015  Score=53.00  Aligned_cols=71  Identities=21%  Similarity=0.238  Sum_probs=46.7

Q ss_pred             CCeEEEEecChHHHHHHHHHH-hcCCcEEE-EEcCchh-hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCE
Q 016162          165 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la-~~~G~~V~-~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  239 (394)
                      .++++|+|.|++|+.+++.+. ...|+++. ++|.++. ..-           . ....+..+....++++++++  .|.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG-----------~-~~i~GvpV~~~~dL~~~v~~~~Id~  151 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVG-----------K-TTEDGIPVYGISTINDHLIDSDIET  151 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTT-----------C-BCTTCCBEEEGGGHHHHC-CCSCCE
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccC-----------c-eeECCeEEeCHHHHHHHHHHcCCCE
Confidence            358999999999999998621 35688866 5677664 310           0 00112233345688998874  899


Q ss_pred             EEEcCCCC
Q 016162          240 ISLHPVLD  247 (394)
Q Consensus       240 V~l~lPlt  247 (394)
                      +++|+|..
T Consensus       152 vIIAvPs~  159 (212)
T 3keo_A          152 AILTVPST  159 (212)
T ss_dssp             EEECSCGG
T ss_pred             EEEecCch
Confidence            99999943

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=94.80  E-value=0.038  Score=53.84  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=24.9

Q ss_pred             CeEEEEecChHHHHHHHHHHh---cCCcEEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  197 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~---~~G~~V~~~d~  197 (394)
                      .+|||+|+|+||+.+.|.|..   .-+++|.+.+.
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~   37 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE   37 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence            379999999999999998743   23678876654

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=94.79  E-value=0.1  Score=51.05  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHhcCC------cEEEEEcC-chh-hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc
Q 016162          165 GQTVGVIG-AGRIGSAYARMMVEGFK------MNLIYYDL-YQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (394)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~~G------~~V~~~d~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (394)
                      ..+|+|+| .|.+|+.+.++| ...+      .++..+.+ +.. +....   .+.. +.  +.....+.. .+.++ +.
T Consensus         9 m~kVaIvGATG~vG~~llr~L-~~~~~~~~~~~ei~~l~s~~~agk~~~~---~~~~-l~--~~~~~~~~~-~~~~~-~~   79 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLL-LGHPAYADGRLRIGALTAATSAGSTLGE---HHPH-LT--PLAHRVVEP-TEAAV-LG   79 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHH-HTCHHHHTTSEEEEEEEESSCTTSBGGG---TCTT-CG--GGTTCBCEE-CCHHH-HT
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HcCCCCCCccEEEEEEECCCcCCCchhh---hccc-cc--ccceeeecc-CCHHH-hc
Confidence            36899999 999999999997 4544      56666642 211 11110   0000 00  001111112 24334 56


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~  283 (394)
                      .+|+|++|+|.+.      ..+....++.|+.+|+.|.---.+..+.+
T Consensus        80 ~~DvVf~alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~  121 (352)
T 2nqt_A           80 GHDAVFLALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVW  121 (352)
T ss_dssp             TCSEEEECCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHH
T ss_pred             CCCEEEECCCCcc------hHHHHHHHhCCCEEEEECCCccCCcchhh
Confidence            8999999999543      23333334678999999754433333433

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=94.78  E-value=0.034  Score=54.09  Aligned_cols=29  Identities=28%  Similarity=0.577  Sum_probs=23.1

Q ss_pred             eEEEEecChHHHHHHHHHHhcC---CcEEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGF---KMNLIYYD  196 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~---G~~V~~~d  196 (394)
                      +|||+|+|+||+.+.|.| ...   .++|.+.+
T Consensus         3 kVgInG~G~IGr~llR~l-~~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCW-HGRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHH-HTCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCCCeEEEEEE
Confidence            799999999999999987 443   56776544

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.78  E-value=0.15  Score=51.56  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=68.0

Q ss_pred             ccCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC-CCccccccCCH
Q 016162          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSM  230 (394)
Q Consensus       162 ~l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l  230 (394)
                      .+.|++|+|+|+.          .-...+++.| ...|++|.+|||......  ....|......... .........++
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYL-MDEGAHLHIYDPKVPREQ--IVVDLSHPGVSEDDQVSRLVTISKDP  402 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHH--HHHHHCC------CHHHHHEEECSSH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHH-HHCCCEEEEEcCccCHHH--HhhhhccccccccccccCceeecCCH
Confidence            4889999999986          3678899998 789999999999854321  11111000000000 00011223578


Q ss_pred             HHHhcccCEEEEcCCCChhhhhcccHHHH-hcCCCCcEEEEcCCCcccCH
Q 016162          231 DEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       231 ~ell~~aDiV~l~lPlt~~t~~li~~~~l-~~mk~gailIN~aRG~~vde  279 (394)
                      ++.++.+|.|++++.- ++-+. ++-+.+ ..|+...+++|. |+ +.|.
T Consensus       403 ~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~  448 (467)
T 2q3e_A          403 YEACDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RR-VLDG  448 (467)
T ss_dssp             HHHHTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SC-TTTT
T ss_pred             HHHHhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CC-cCCc
Confidence            8899999999999873 44333 354444 567776668886 54 3443

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.77  E-value=0.086  Score=48.46  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             ccCCCeEEEEec-Ch--HHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl-G~--IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ++.||++.|.|. |.  ||+++|+.| ...|++|++.+++..
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l-~~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSL-HEAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHH-HHTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHH-HHCCCEEEEecCchH
Confidence            688999999997 45  999999998 477999999988753

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.76  E-value=0.029  Score=46.42  Aligned_cols=99  Identities=16%  Similarity=0.112  Sum_probs=64.5

Q ss_pred             CeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ++|.|||.    |+.|..+.+.| +..|.+|+.++|.....                 .  +...+.++.++-. -|+++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L-~~~g~~V~pVnP~~~~i-----------------~--G~~~y~sl~dlp~-vDlav   63 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERL-KSHGHEFIPVGRKKGEV-----------------L--GKTIINERPVIEG-VDTVT   63 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHH-HHHTCCEEEESSSCSEE-----------------T--TEECBCSCCCCTT-CCEEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHH-HHCCCeEEEECCCCCcC-----------------C--CeeccCChHHCCC-CCEEE
Confidence            68999998    57999999998 67788999999865321                 1  1223457777666 89999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +++|. +.+..++.+ ..+ +...+++++.  |- . ++++.+.+++..+.
T Consensus        64 i~~p~-~~v~~~v~e-~~~-~g~k~v~~~~--G~-~-~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           64 LYINP-QNQLSEYNY-ILS-LKPKRVIFNP--GT-E-NEELEEILSENGIE  107 (122)
T ss_dssp             ECSCH-HHHGGGHHH-HHH-HCCSEEEECT--TC-C-CHHHHHHHHHTTCE
T ss_pred             EEeCH-HHHHHHHHH-HHh-cCCCEEEECC--CC-C-hHHHHHHHHHcCCe
Confidence            99992 344455533 222 2334566654  32 3 45666666665554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.76  E-value=0.05  Score=52.35  Aligned_cols=115  Identities=15%  Similarity=0.055  Sum_probs=71.4

Q ss_pred             CCeEEEEecChHHHH-HHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCEEEE
Q 016162          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL  242 (394)
Q Consensus       165 gktvGIIGlG~IG~~-vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l  242 (394)
                      .++|.|||.|.+|.+ +|+.| ...|++|.++|........+       .++..|.   .+..-.+.+++. .++|+|+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L-~~~G~~V~~~D~~~~~~~~~-------~L~~~gi---~v~~g~~~~~l~~~~~d~vV~   72 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIA-KEAGFEVSGCDAKMYPPMST-------QLEALGI---DVYEGFDAAQLDEFKADVYVI   72 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHH-HHTTCEEEEEESSCCTTHHH-------HHHHTTC---EEEESCCGGGGGSCCCSEEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHH-HhCCCEEEEEcCCCCcHHHH-------HHHhCCC---EEECCCCHHHcCCCCCCEEEE
Confidence            478999999999996 88886 78999999999875321111       1222232   121112444555 57999988


Q ss_pred             c--CC-CChhhh-------hcccH-HHHhc--CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          243 H--PV-LDKTTY-------HLINK-ERLAT--MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       243 ~--lP-lt~~t~-------~li~~-~~l~~--mk~-gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      .  +| .+|+..       .++.+ +.|..  ++. ..+-|--+.|+.--..-|...|+...
T Consensus        73 Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           73 GNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             CTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             CCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            6  33 233322       13443 33443  332 34557777899988888888887643

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.75  E-value=0.037  Score=51.46  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+.||++.|.|.   |.||+.+|+.| ...|++|++.+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l-~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            478999999997   69999999998 577999999998764

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=94.72  E-value=0.97  Score=42.85  Aligned_cols=68  Identities=15%  Similarity=0.052  Sum_probs=50.4

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+.|.+|+++|=   +++..+.+..+ ..||++|.+..|..-. ...        ....|     .....+++|.++++|
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~-p~~--------~~~~g-----~~~~~d~~eav~~aD  207 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLL-NMFGAKIGVCGPKTLI-PRD--------VEVFK-----VDVFDDVDKGIDWAD  207 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGS-CTT--------GGGGC-----EEEESSHHHHHHHCS
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HHCCCEEEEECCchhC-Cch--------HHHCC-----CEEEcCHHHHhCCCC
Confidence            488999999996   89999999986 6899999999875421 010        01111     233579999999999


Q ss_pred             EEEEcCC
Q 016162          239 VISLHPV  245 (394)
Q Consensus       239 iV~l~lP  245 (394)
                      +|.. +-
T Consensus       208 vvy~-~~  213 (291)
T 3d6n_B          208 VVIW-LR  213 (291)
T ss_dssp             EEEE-CC
T ss_pred             EEEE-eC
Confidence            9988 44

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.72  E-value=0.024  Score=54.62  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=45.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhh---HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc--cCE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  239 (394)
                      .++||||+|.+|+..++.+  .-+.++. ++|+++..   ...+..+.|       +   .....+.|+++++.+  .|+
T Consensus         3 ~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~ll~~~~vD~   70 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAISEM-------N---IKPKKYNNWWEMLEKEKPDI   70 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHTT-------T---CCCEECSSHHHHHHHHCCSE
T ss_pred             eEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHHc-------C---CCCcccCCHHHHhcCCCCCE
Confidence            4899999999999766653  4577776 57876531   222211111       1   112346799999975  899


Q ss_pred             EEEcCC
Q 016162          240 ISLHPV  245 (394)
Q Consensus       240 V~l~lP  245 (394)
                      |++|+|
T Consensus        71 V~I~tp   76 (337)
T 3ip3_A           71 LVINTV   76 (337)
T ss_dssp             EEECSS
T ss_pred             EEEeCC
Confidence            999998

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.71  E-value=0.11  Score=48.91  Aligned_cols=39  Identities=23%  Similarity=0.123  Sum_probs=33.3

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ..+.||++.|.|. |.||+.+|+.| ...|++|++.++...
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~   84 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAY-AREGADVAINYLPAE   84 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECCGGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            4689999999975 78999999998 578999999988743

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=94.71  E-value=0.035  Score=54.06  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEE-EcCchh
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQA  200 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~-~d~~~~  200 (394)
                      .+|||.|||+||+.++|++ ..+|++|++ +||...
T Consensus         8 ~kvgInGFGRIGrlv~R~~-~~~~veivainDp~~d   42 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRAC-MEKGVKVVAVNDPFID   42 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECTTCC
T ss_pred             eEEEEECCChHHHHHHHHH-HhCCCEEEEEeCCCCC
Confidence            4899999999999999985 788999887 677543

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.69  E-value=0.04  Score=49.13  Aligned_cols=71  Identities=14%  Similarity=0.020  Sum_probs=47.2

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC--CCccccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ++|.|+| .|.||+.+++.| ...|.+|++.+|+......         +. .+.  .........++.++++.+|+|+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~---------~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKI---------EN-EHLKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCCC---------CC-TTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccchh---------cc-CceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            6899999 699999999998 5789999999998654210         00 000  00001112346678899999998


Q ss_pred             cCCCC
Q 016162          243 HPVLD  247 (394)
Q Consensus       243 ~lPlt  247 (394)
                      +....
T Consensus        74 ~a~~~   78 (227)
T 3dhn_A           74 AFNPG   78 (227)
T ss_dssp             CCCC-
T ss_pred             eCcCC
Confidence            87543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.69  E-value=0.036  Score=52.90  Aligned_cols=93  Identities=13%  Similarity=0.119  Sum_probs=64.0

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC-HHHHhcccCEEE
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  241 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~  241 (394)
                      .|.+|.|+| .|.+|...++.+ +.+|++|++.++...  . ++.+.       .|..........+ +.+.+...|+|+
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~~~~~--~-~~~~~-------lGa~~~i~~~~~~~~~~~~~g~D~v~  220 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTASKRN--H-AFLKA-------LGAEQCINYHEEDFLLAISTPVDAVI  220 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEECHHH--H-HHHHH-------HTCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeccch--H-HHHHH-------cCCCEEEeCCCcchhhhhccCCCEEE
Confidence            578999997 999999999985 899999998875332  1 22222       2332211112234 667678899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      -|+.. +    .+ ...++.++++..++.++.
T Consensus       221 d~~g~-~----~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          221 DLVGG-D----VG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             ESSCH-H----HH-HHHGGGEEEEEEEEECCS
T ss_pred             ECCCc-H----HH-HHHHHhccCCCEEEEeCC
Confidence            98862 1    12 567888999999999854

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.68  E-value=0.12  Score=49.70  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=64.2

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhc--CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc--CCHHHHhcccCEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~~aDiV  240 (394)
                      .+|+|+| .|.+|+.+|..|+..  +.-++..+|... .......+     +.+. ........+  .+..+.++.||+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~D-----l~~~-~~~~~v~~~~~~~~~~~~~~aDiv   73 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVD-----LSHI-PTAVKIKGFSGEDATPALEGADVV   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHH-----HHTS-CSSEEEEEECSSCCHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHH-----hhCC-CCCceEEEecCCCcHHHhCCCCEE
Confidence            4799999 999999999887543  667999999875 21111111     1111 111112111  2456789999999


Q ss_pred             EEcCCC--Chh-hh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016162          241 SLHPVL--DKT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       241 ~l~lPl--t~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vde~aL~  283 (394)
                      +++.+.  .|. ++ .++  |.       +.+....|++++++++  .++|.-..+
T Consensus        74 ii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           74 LISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             EECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            998743  221 11 122  11       1233335888999996  466655544

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.66  E-value=0.062  Score=51.62  Aligned_cols=69  Identities=13%  Similarity=0.208  Sum_probs=44.5

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEE-EEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----ccC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  238 (394)
                      .+|||||+|.||+.+++.+.+ .-++++ .++|+++.....+..+.|       +..    ....+.++++.     ..|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~-------g~~----~~~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM-------GVT----TTYAGVEGLIKLPEFADID   73 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT-------TCC----EESSHHHHHHHSGGGGGEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc-------CCC----cccCCHHHHHhccCCCCCc
Confidence            489999999999999998744 346664 467877544112221222       211    01246777764     589


Q ss_pred             EEEEcCC
Q 016162          239 VISLHPV  245 (394)
Q Consensus       239 iV~l~lP  245 (394)
                      +|++++|
T Consensus        74 vV~~atp   80 (312)
T 1nvm_B           74 FVFDATS   80 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999999

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.64  E-value=0.075  Score=51.51  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=61.5

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcC-CC-CccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANG-EQ-PVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~ell~~a  237 (394)
                      ....++|+|||.|.||..+|..++ ..|.  ++..+|...........+     +.+.. .. ........+.+ .++.|
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~L~Di~~~~~~g~a~D-----L~~~~~~~~~~~i~~~~d~~-~~~~a   88 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISIL-MKDLADELALVDVIEDKLKGEMMD-----LQHGSLFLKTPKIVSSKDYS-VTANS   88 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSCHHHHHHHHHH-----HHHTGGGCSCCEEEECSSGG-GGTTE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEeCChHHHHHHHHh-----hhhhhhccCCCeEEEcCCHH-HhCCC
Confidence            456789999999999999998774 3355  899999976432221111     11110 00 11111234555 58999


Q ss_pred             CEEEEcCC--CCh-hhh-hccc--H-------HHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPV--LDK-TTY-HLIN--K-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lP--lt~-~t~-~li~--~-------~~l~~mk~gailIN~aR  273 (394)
                      |+|+++..  ..| .|+ .++.  .       +.+....|++++++++.
T Consensus        89 DiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           89 KLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             EEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99998853  222 122 1221  1       23333478999999985

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.61  E-value=0.11  Score=52.00  Aligned_cols=96  Identities=21%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             CCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHH-HHHHhhhhh-hhhcCCCCccccccCCHH
Q 016162          164 KGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLE-KFVTAYGQF-LKANGEQPVTWKRASSMD  231 (394)
Q Consensus       164 ~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~  231 (394)
                      .|++|+|+|+.          .-...+++.| ...|++|.+|||....... ...+.|+.. +.+.+.     ....+++
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  385 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSS-----LLVSDLD  385 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHT-----TBCSCHH
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChhhccchhhhhcccccccccc-----cccCCHH
Confidence            68999999997          5678899998 7899999999998432110 000112100 000000     1235788


Q ss_pred             HHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       232 ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      +.++.||+|++++.- ++-+.+ +   .+.|+ +.+++|+
T Consensus       386 ~~~~~~d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~  419 (436)
T 1mv8_A          386 EVVASSDVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL  419 (436)
T ss_dssp             HHHHHCSEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred             HHHhCCcEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence            999999999999873 333222 2   34565 6788887

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.59  E-value=0.056  Score=51.59  Aligned_cols=94  Identities=13%  Similarity=0.070  Sum_probs=60.6

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cc
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (394)
                      .|++|.|+| .|.||...++.+ +..|++|++.+++..+..  +...       .|..........++.+.+      ..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~-------~Ga~~~~~~~~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKAA--HAKA-------LGAWETIDYSHEDVAKRVLELTDGKK  209 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHH--HHHH-------HTCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHH-------cCCCEEEeCCCccHHHHHHHHhCCCC
Confidence            588999999 899999999985 789999999998765421  1111       222111111112333322      25


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-+...  +    .-...+..++++..++.++.
T Consensus       210 ~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          210 CPVVYDGVGQ--D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             EEEEEESSCG--G----GHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhcCCCEEEEEec
Confidence            7888888762  1    12456778888888888763

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=94.58  E-value=0.3  Score=46.76  Aligned_cols=74  Identities=16%  Similarity=0.321  Sum_probs=50.8

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|.||+++|=   |++..+.+..+ ..| |++|.+..|..-...+...+    .++..|   ..+....+++|.++.+
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~~G~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~a  219 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYAL-SLFENVEMYFVSPKELRLPKDIIE----DLKAKN---IKFYEKESLDDLDDDI  219 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEEESCGGGCCTTC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHH-HhcCCCEEEEECCcccccCHHHHH----HHHHcC---CEEEEEcCHHHHhcCC
Confidence            478999999997   58999999986 689 99999998753221111111    112222   2233356899999999


Q ss_pred             CEEEEc
Q 016162          238 DVISLH  243 (394)
Q Consensus       238 DiV~l~  243 (394)
                      |+|...
T Consensus       220 Dvvy~~  225 (306)
T 4ekn_B          220 DVLYVT  225 (306)
T ss_dssp             SEEEEC
T ss_pred             CEEEeC
Confidence            999864

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.57  E-value=0.055  Score=50.17  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=33.5

Q ss_pred             ccccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       160 g~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ...+.||++.|.|. |.||+.+|++| ...|++|++.+++...
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l-~~~G~~V~~~~~~~~~   54 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHL-GRLGAKVVVNYANSTK   54 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCCHH
Confidence            35799999999976 58999999998 5789999987765444

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.56  E-value=0.093  Score=52.91  Aligned_cols=123  Identities=15%  Similarity=0.131  Sum_probs=66.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHh-hhh-h----------hhhcCCCCccccccCCHHH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTA-YGQ-F----------LKANGEQPVTWKRASSMDE  232 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~-~~~-~----------~~~~~~~~~~~~~~~~l~e  232 (394)
                      .+|||||+|.||+.+++.+...-++++. ++|++.....+ ..+. |+. +          +...-.. -....+.|+++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~-~a~~~yG~~~~~~~~~~~~~i~~a~~~-g~~~v~~D~ee  101 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFK-AIRTAYGDEENAREATTESAMTRAIEA-GKIAVTDDNDL  101 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHH-HHHHHHSSSTTEEECSSHHHHHHHHHT-TCEEEESCHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHH-HHHHhcCCccccccccchhhhhhhhcc-CCceEECCHHH
Confidence            4799999999999999887434477754 66877654322 2222 120 0          0000000 01123578999


Q ss_pred             Hhc--ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC-cccCHHHHHHHHHcCCcceE
Q 016162          233 VLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       233 ll~--~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG-~~vde~aL~~aL~~g~l~ga  294 (394)
                      ++.  +.|+|++++|. ++...   +-.+..++.|.-++...-+ .+.+-+.|.++.++..+...
T Consensus       102 LL~d~dIDaVviaTp~-p~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~  162 (446)
T 3upl_A          102 ILSNPLIDVIIDATGI-PEVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYS  162 (446)
T ss_dssp             HHTCTTCCEEEECSCC-HHHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HhcCCCCCEEEEcCCC-hHHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeee
Confidence            997  48999999984 32211   1223344555555532111 12233566766665444433

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.54  E-value=0.058  Score=51.63  Aligned_cols=94  Identities=14%  Similarity=0.127  Sum_probs=59.5

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cc
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (394)
                      .|++|.|+| .|.||...++.+ +..|++|++.+++..+. + +.+       ..|..........++.+.+      ..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~~-------~~ga~~~~~~~~~~~~~~~~~~~~~~g  217 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVASTDEKL-K-IAK-------EYGAEYLINASKEDILRQVLKFTNGKG  217 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-HHH-------HTTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHH-------HcCCcEEEeCCCchHHHHHHHHhCCCC
Confidence            588999999 899999999985 89999999999976542 1 111       2222111111112333322      14


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-+...  .    .-...+..++++..++.++.
T Consensus       218 ~D~vid~~g~--~----~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          218 VDASFDSVGK--D----TFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEEEECCGG--G----GHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhccCCEEEEEcC
Confidence            7888887752  1    12455677788888888753

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.53  E-value=0.055  Score=52.49  Aligned_cols=94  Identities=16%  Similarity=0.201  Sum_probs=61.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHHhcccCEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (394)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++..+... ..       ++.|.....  ...+   +.++....|+|
T Consensus       180 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~~~~~~~~~-~~-------~~lGa~~vi--~~~~~~~~~~~~~g~D~v  248 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSNKKREE-AL-------QDLGADDYV--IGSDQAKMSELADSLDYV  248 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSTTHHHH-HH-------TTSCCSCEE--ETTCHHHHHHSTTTEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCChHHHHH-HH-------HHcCCceee--ccccHHHHHHhcCCCCEE
Confidence            588999999999999999985 8899999999987654211 11       122322111  1122   22333468999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +-++.....     -...+..++++..++.++.
T Consensus       249 id~~g~~~~-----~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          249 IDTVPVHHA-----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EECCCSCCC-----SHHHHTTEEEEEEEEECSC
T ss_pred             EECCCChHH-----HHHHHHHhccCCEEEEeCC
Confidence            988863211     2455677889999988864

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=94.51  E-value=0.041  Score=52.41  Aligned_cols=103  Identities=14%  Similarity=0.059  Sum_probs=62.3

Q ss_pred             eEEEEec-ChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEE
Q 016162          167 TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (394)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (394)
                      ++.|+|. |++|+.+++.+ ...|++ |..++|..... +              .  .+...+.+++++..  ..|++++
T Consensus        15 ~v~V~Gasg~~G~~~~~~l-~~~g~~~V~~VnP~~~g~-~--------------i--~G~~vy~sl~el~~~~~~Dv~ii   76 (294)
T 2yv1_A           15 KAIVQGITGRQGSFHTKKM-LECGTKIVGGVTPGKGGQ-N--------------V--HGVPVFDTVKEAVKETDANASVI   76 (294)
T ss_dssp             CEEEETTTSHHHHHHHHHH-HHTTCCEEEEECTTCTTC-E--------------E--TTEEEESSHHHHHHHHCCCEEEE
T ss_pred             EEEEECCCCCHHHHHHHHH-HhCCCeEEEEeCCCCCCc-e--------------E--CCEeeeCCHHHHhhcCCCCEEEE
Confidence            5788899 99999999987 567876 44555542100 0              0  11234578999988  8999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l  291 (394)
                      ++|. +.+...+ ++..+ ..-. .+|..+.|-. -+++.|.++.++..+
T Consensus        77 ~vp~-~~~~~~v-~ea~~-~Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi  122 (294)
T 2yv1_A           77 FVPA-PFAKDAV-FEAID-AGIE-LIVVITEHIPVHDTMEFVNYAEDVGV  122 (294)
T ss_dssp             CCCH-HHHHHHH-HHHHH-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             ccCH-HHHHHHH-HHHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9992 2333333 22222 2222 2455555422 345688888876544

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.51  E-value=0.097  Score=48.80  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+.||++.|.|.   |.||+.+|+.| ...|++|++.+|+..
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSF-HREGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHH-HHTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            488999999997   59999999998 477999999998763

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.50  E-value=0.029  Score=56.02  Aligned_cols=39  Identities=21%  Similarity=0.452  Sum_probs=34.6

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      -+.|++|+|+|-|.+|+.+++.+ +.+|.+|+++|+++..
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa-~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAA-QSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCcC
Confidence            46899999999999999999985 8999999999987543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.48  E-value=0.046  Score=53.21  Aligned_cols=94  Identities=17%  Similarity=0.136  Sum_probs=61.0

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----cc
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (394)
                      .|++|.|+| .|.||...++.+ +..|++|++.+++.... + +.       +..|..........++.+.+.     ..
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~~~~~-~-~~-------~~~Ga~~~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKS-A-FL-------KSLGCDRPINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHH-HHTTCEEEEEESSHHHH-H-HH-------HHTTCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEECCHHHH-H-HH-------HHcCCcEEEecCChhHHHHHHHhcCCCC
Confidence            588999999 799999999985 78999999999876442 1 11       112221111111124444332     47


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|+-++..  .    .-...+..++++..+|.++.
T Consensus       233 D~vid~~g~--~----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          233 DVVYESVGG--A----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEECSCT--H----HHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCH--H----HHHHHHHHHhcCCEEEEEeC
Confidence            999888763  1    12456777888888888864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.48  E-value=0.063  Score=51.17  Aligned_cols=94  Identities=14%  Similarity=0.120  Sum_probs=57.8

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH-Hh-----cc
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VL-----RE  236 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll-----~~  236 (394)
                      .|+++.|+| .|.||..+++.+ +..|++|++.+++.... +. ...+       |..........+..+ +.     ..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~V~~~~~~~~~~-~~-~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~  209 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQKA-QS-ALKA-------GAWQVINYREEDLVERLKEITGGKK  209 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHHH-HH-HHHH-------TCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-HHHc-------CCCEEEECCCccHHHHHHHHhCCCC
Confidence            588999999 799999999986 78899999999876442 11 1111       211110001122222 21     13


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+.+..  .++    -...+..++++..++.++.
T Consensus       210 ~D~vi~~~g--~~~----~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          210 VRVVYDSVG--RDT----WERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEEEECSC--GGG----HHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCc--hHH----HHHHHHHhcCCCEEEEEec
Confidence            688887775  222    2455677788888887754

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.47  E-value=0.093  Score=49.39  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             cccCCCeEEEEecC-h--HHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          161 NLLKGQTVGVIGAG-R--IGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       161 ~~l~gktvGIIGlG-~--IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ..+.||++.|.|.+ .  ||+.+|+.| ...|++|++.+++..
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~l-a~~G~~V~~~~r~~~   68 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAA-REAGAELAFTYQGDA   68 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHH-HHTTCEEEEEECSHH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHH-HHCCCEEEEEcCCHH
Confidence            36899999999984 4  999999998 577999999998853

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.47  E-value=0.046  Score=52.65  Aligned_cols=95  Identities=13%  Similarity=0.112  Sum_probs=57.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcC--CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc-CC-HHHHhc--cc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SS-MDEVLR--EA  237 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~ell~--~a  237 (394)
                      .|.+|.|+|.|.||...++.+ +.+  |++|++.+++..+..  +.+       +.|......... .+ .+++-.  ..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqla-k~~~~Ga~Vi~~~~~~~~~~--~~~-------~lGa~~vi~~~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQIL-KALMKNITIVGISRSKKHRD--FAL-------ELGADYVSEMKDAESLINKLTDGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHH-HHHCTTCEEEEECSCHHHHH--HHH-------HHTCSEEECHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHH--HHH-------HhCCCEEeccccchHHHHHhhcCCCc
Confidence            688999999999999999985 788  999999998765421  111       122211100000 01 112221  47


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|+-++.. +.+    -...+..++++..++.++.
T Consensus       240 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          240 SIAIDLVGT-EET----TYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             EEEEESSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             cEEEECCCC-hHH----HHHHHHHhhcCCEEEEeCC
Confidence            888888763 212    1445666778877777753

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.45  E-value=0.028  Score=55.35  Aligned_cols=68  Identities=18%  Similarity=0.223  Sum_probs=47.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcC--CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      -.+|||||.| +|+.-++.+ +..  ++++. ++|++.+.. +++.+.|       |.     ..+.|+++++.+.|+|+
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~-~~~~~~~elvav~~~~~~~a-~~~a~~~-------gv-----~~~~~~~~l~~~~D~v~   71 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAF-MQPPEGLELVGLLAQGSARS-RELAHAF-------GI-----PLYTSPEQITGMPDIAC   71 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTT-SSCCTTEEEEEEECCSSHHH-HHHHHHT-------TC-----CEESSGGGCCSCCSEEE
T ss_pred             CCEEEEEehH-HHHHHHHHH-HhCCCCeEEEEEECCCHHHH-HHHHHHh-------CC-----CEECCHHHHhcCCCEEE
Confidence            3589999999 799877765 344  57766 678876542 3333333       22     23578999999999999


Q ss_pred             EcCCCC
Q 016162          242 LHPVLD  247 (394)
Q Consensus       242 l~lPlt  247 (394)
                      +++|..
T Consensus        72 i~~p~~   77 (372)
T 4gmf_A           72 IVVRST   77 (372)
T ss_dssp             ECCC--
T ss_pred             EECCCc
Confidence            999854

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=94.40  E-value=0.037  Score=54.65  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=24.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhc--CCcEEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--~G~~V~~~d~  197 (394)
                      .+|||+|+|+||+.++|.+...  -+++|.+.+.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd   36 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEec
Confidence            3799999999999999987432  3478776543

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.39  E-value=0.038  Score=53.80  Aligned_cols=31  Identities=23%  Similarity=0.420  Sum_probs=24.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhc--CCcEEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--~G~~V~~~d  196 (394)
                      .+|||+|+|+||+.+.|.+...  -+++|.+.+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            3799999999999999987433  347877654

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.38  E-value=0.024  Score=53.47  Aligned_cols=74  Identities=20%  Similarity=0.144  Sum_probs=44.8

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|+|+ |+||+.+++.++..-|+++. ++|+........   ..   ....+....+.....++++++..+|+|+-+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~---d~---~~~~g~~~~~v~~~~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DA---GELAGAGKTGVTVQSSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CT---TCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhh---hH---HHHcCCCcCCceecCCHHHHhcCCCEEEEc
Confidence            48999998 99999999986445688876 677754320000   00   000011111122245778888899999955


Q ss_pred             CC
Q 016162          244 PV  245 (394)
Q Consensus       244 lP  245 (394)
                      ++
T Consensus        80 t~   81 (273)
T 1dih_A           80 TR   81 (273)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.31  E-value=0.043  Score=52.73  Aligned_cols=94  Identities=14%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             CCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cc
Q 016162          164 KGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (394)
Q Consensus       164 ~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (394)
                      .|++|.|+|.| .||...++.+ +..|++|++.+++..+..  +...       .|..........++.+.+      ..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~-------lga~~~~~~~~~~~~~~~~~~~~~~g  213 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHTE--ELLR-------LGAAYVIDTSTAPLYETVMELTNGIG  213 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSSTTHH--HHHH-------HTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--HHHh-------CCCcEEEeCCcccHHHHHHHHhCCCC
Confidence            58899999998 9999999985 789999999998765421  1111       122111111112333322      25


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-|+.. +.+     ...+..++++..++.++-
T Consensus       214 ~Dvvid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          214 ADAAIDSIGG-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEEEEESSCH-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             CcEEEECCCC-hhH-----HHHHHHhcCCCEEEEEee
Confidence            7888888762 222     234567888888888864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.28  E-value=0.26  Score=47.97  Aligned_cols=96  Identities=20%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh---cccCE
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READV  239 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDi  239 (394)
                      .|++|.|+| .|.||...++.+ +..|++|++.++ ..+ .+ +.+       ..|..........++.+.+   ...|+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~~-~~~-~~-~~~-------~lGa~~v~~~~~~~~~~~~~~~~g~D~  251 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVCS-QDA-SE-LVR-------KLGADDVIDYKSGSVEEQLKSLKPFDF  251 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC-GGG-HH-HHH-------HTTCSEEEETTSSCHHHHHHTSCCBSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEeC-hHH-HH-HHH-------HcCCCEEEECCchHHHHHHhhcCCCCE
Confidence            588999999 799999999985 889999998874 322 22 112       2232211111112443333   35899


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      |+-++.....+    -...+..++++..++.++..
T Consensus       252 vid~~g~~~~~----~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          252 ILDNVGGSTET----WAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             EEESSCTTHHH----HGGGGBCSSSCCEEEESCCS
T ss_pred             EEECCCChhhh----hHHHHHhhcCCcEEEEeCCC
Confidence            99998743121    13456778999999999754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.24  E-value=0.1  Score=49.64  Aligned_cols=38  Identities=24%  Similarity=0.521  Sum_probs=32.2

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~  199 (394)
                      ..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La-~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLT-RCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCc
Confidence            4689999999999999999999985 4454 788888765

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.19  E-value=0.11  Score=49.87  Aligned_cols=91  Identities=9%  Similarity=0.150  Sum_probs=57.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHH-hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  240 (394)
                      .+++.|+|+|.+|+.+++.| ...|. |++.|++++...  ..        +.+.. .......+   ++++ +.+||.|
T Consensus       115 ~~~viI~G~G~~g~~l~~~L-~~~g~-v~vid~~~~~~~--~~--------~~~~~-~i~gd~~~~~~L~~a~i~~a~~v  181 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRKK--VL--------RSGAN-FVHGDPTRVSDLEKANVRGARAV  181 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTG-GGSCE-EEEESCGGGHHH--HH--------HTTCE-EEESCTTSHHHHHHTCSTTEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHH-HhCCc-EEEEeCChhhhh--HH--------hCCcE-EEEeCCCCHHHHHhcChhhccEE
Confidence            56899999999999999997 68888 999999875432  11        11111 11111223   3444 7789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      +++++.+  ...+.-......+.+...+|-
T Consensus       182 i~~~~~d--~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          182 IVDLESD--SETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             EECCSSH--HHHHHHHHHHHTTCTTSEEEE
T ss_pred             EEcCCcc--HHHHHHHHHHHHHCCCCeEEE
Confidence            9999843  333444556666777644443

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.08  E-value=0.25  Score=50.10  Aligned_cols=112  Identities=13%  Similarity=0.093  Sum_probs=70.6

Q ss_pred             ccCCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHH--HHHHHhhhhhhhhcCCCCccccccCC
Q 016162          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASS  229 (394)
Q Consensus       162 ~l~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
                      .+.|++|+|+|+          ..-...+++.| ...|++|.+|||......  ......|+.....     .......+
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  405 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHL-MEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVE-----RLITVESD  405 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHH-----HHEEEESS
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHH-HHCCCEEEEECCCCCchhhHHHHHhhhcccccc-----CceeecCC
Confidence            589999999997          45678899997 788999999999864321  1111101000000     00112357


Q ss_pred             HHHHhcccCEEEEcCCCChhhhhcccHHH-HhcCCCCcEEEEcCCCcccCHHHHH
Q 016162          230 MDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       230 l~ell~~aDiV~l~lPlt~~t~~li~~~~-l~~mk~gailIN~aRG~~vde~aL~  283 (394)
                      +++.++.+|.|++++.- ++-+. ++-+. .+.|+...+++|. |+ ++|.+.+.
T Consensus       406 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~  456 (481)
T 2o3j_A          406 PYAAARGAHAIVVLTEW-DEFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKALR  456 (481)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHHH
T ss_pred             HHHHHcCCCEEEEcCCc-HHhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHHH
Confidence            78899999999999873 34333 35444 4567777688886 53 55665443

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.02  E-value=0.35  Score=46.64  Aligned_cols=95  Identities=18%  Similarity=0.126  Sum_probs=60.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc----ccCCHHHHh----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK----RASSMDEVL----  234 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell----  234 (394)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.+++..+..  +.+.+       ........    ...++.+.+    
T Consensus       179 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~a~~l-------~~~~~~~~~~~~~~~~~~~~v~~~t  248 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCA-KAAGACPLVITDIDEGRLK--FAKEI-------CPEVVTHKVERLSAEESAKKIVESF  248 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEEESCHHHHH--HHHHH-------CTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HHHHh-------chhcccccccccchHHHHHHHHHHh
Confidence            478999999999999999984 899997 999988765421  11111       10000000    001222222    


Q ss_pred             --cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          235 --READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       235 --~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                        ...|+|+-++.. +.+.    ...+..++++..++.++-
T Consensus       249 ~g~g~Dvvid~~g~-~~~~----~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          249 GGIEPAVALECTGV-ESSI----AAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             SSCCCSEEEECSCC-HHHH----HHHHHHSCTTCEEEECCC
T ss_pred             CCCCCCEEEECCCC-hHHH----HHHHHHhcCCCEEEEEcc
Confidence              258999999862 2221    456778899999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.02  E-value=0.081  Score=53.56  Aligned_cols=73  Identities=21%  Similarity=0.285  Sum_probs=48.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHH-hcccCEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  240 (394)
                      .++|-|+|+|++|+.+|+.| ...|.+|++.|.++... +...+.+       +...+ .....+   |++. +.+||++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L-~~~~~~v~vId~d~~~~-~~~~~~~-------~~~~i-~Gd~~~~~~L~~Agi~~ad~~   72 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENL-VGENNDITIVDKDGDRL-RELQDKY-------DLRVV-NGHASHPDVLHEAGAQDADML   72 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHT-CSTTEEEEEEESCHHHH-HHHHHHS-------SCEEE-ESCTTCHHHHHHHTTTTCSEE
T ss_pred             cCEEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHHHhc-------CcEEE-EEcCCCHHHHHhcCCCcCCEE
Confidence            46899999999999999997 68899999999987542 2221211       11111 111223   4444 6889999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      +.+++.+
T Consensus        73 ia~t~~D   79 (461)
T 4g65_A           73 VAVTNTD   79 (461)
T ss_dssp             EECCSCH
T ss_pred             EEEcCCh
Confidence            9888743

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.01  E-value=0.1  Score=49.80  Aligned_cols=36  Identities=19%  Similarity=0.002  Sum_probs=29.7

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ...++|.|+|. |.||+.+++.| ...|.+|++.+|..
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATAS-LDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHH-HHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHH-HHCCCCEEEEECCC
Confidence            34679999998 99999999998 56789999999876

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.99  E-value=0.1  Score=52.61  Aligned_cols=90  Identities=17%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             cccCCCeEEEEecC----------hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       161 ~~l~gktvGIIGlG----------~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      ..++|++|+|+|+.          .=...+++.| ...|++|.+|||.......   ..|+.          ......++
T Consensus       329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L-~~~Ga~V~~~DP~~~~~~~---~~~~~----------~~~~~~~~  394 (444)
T 3vtf_A          329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL-LERGARVYVHDPMAMEKAR---AVLGD----------SVTYVEDP  394 (444)
T ss_dssp             TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECSSTHHHHH---HHHGG----------GSEECSCH
T ss_pred             cccCCCEEEEEeeecCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChHHH---HhcCC----------CceecCCH
Confidence            36899999999986          2377889987 7999999999998643221   11211          12235689


Q ss_pred             HHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       231 ~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      ++.+..+|.|+++++ .++-+.+ +      + ++.+++|. |+
T Consensus       395 ~~a~~~aDavvi~t~-h~ef~~l-d------~-~~~vv~D~-Rn  428 (444)
T 3vtf_A          395 QALLDQVEGVIIATA-WPQYEGL-D------Y-RGKVVVDG-RY  428 (444)
T ss_dssp             HHHHHHCSEEEECSC-CGGGGGS-C------C-TTCEEEES-SC
T ss_pred             HHHHhCCCEEEEccC-CHHHhCC-C------c-CCCEEEEC-CC
Confidence            999999999999987 3333222 2      2 46788885 53

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.97  E-value=0.16  Score=48.91  Aligned_cols=92  Identities=12%  Similarity=0.069  Sum_probs=59.1

Q ss_pred             CeEEEE-ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cccC
Q 016162          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------READ  238 (394)
Q Consensus       166 ktvGII-GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~aD  238 (394)
                      +++.|. |.|.||...++.+ +.+|++|++.+++..+..  +...       .|..........++.+.+      ...|
T Consensus       166 ~~vli~gg~g~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~~~~-------~Ga~~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQIA--LLKD-------IGAAHVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESCGGGHH--HHHH-------HTCSEEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHH-------cCCCEEEECCcHHHHHHHHHHhcCCCCc
Confidence            567665 9999999999985 889999999998765421  1112       232111111112333332      2589


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+-|+.. +.    + ...+..++++..++.++.
T Consensus       236 ~vid~~g~-~~----~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVTG-PL----A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSCH-HH----H-HHHHHHSCTTCEEEECCC
T ss_pred             EEEECCCC-hh----H-HHHHhhhcCCCEEEEEec
Confidence            99988762 21    1 557788999999999863

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.95  E-value=0.16  Score=47.00  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      ..+.||++.|.|. |.||+.+|+.| ...|++|++.|+.
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKL-AEEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEccc
Confidence            4689999999985 68999999998 5789999999886

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.92  E-value=0.1  Score=50.16  Aligned_cols=37  Identities=19%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+++.|+|. |.||..+++.+ +..|++|++.+++...
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a-~~~G~~Vi~~~~~~~~  203 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDK  203 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            5889999999 99999999985 7899999999987654

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=93.90  E-value=0.08  Score=51.47  Aligned_cols=99  Identities=16%  Similarity=0.181  Sum_probs=54.1

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCch---hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+|+|+| .|.+|+++.++|..--+.++..+..+.   .. -....+.|.. ++  +.....+....+.++++.++|+|+
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~sa-Gk~~~~~~p~-~~--~~~~~~v~~~~~~~~~~~~~Dvvf   80 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDA-GKLISDLHPQ-LK--GIVELPLQPMSDISEFSPGVDVVF   80 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTT-TSBHHHHCGG-GT--TTCCCBEEEESSGGGTCTTCSEEE
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhc-CCchHHhCcc-cc--CccceeEeccCCHHHHhcCCCEEE
Confidence            5899999 699999999998433456776654332   11 0001111110 11  111111111104455558999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+|... +..+. ...   .+.|+.+|+.|.
T Consensus        81 ~a~p~~~-s~~~~-~~~---~~~g~~vIDlSa  107 (337)
T 3dr3_A           81 LATAHEV-SHDLA-PQF---LEAGCVVFDLSG  107 (337)
T ss_dssp             ECSCHHH-HHHHH-HHH---HHTTCEEEECSS
T ss_pred             ECCChHH-HHHHH-HHH---HHCCCEEEEcCC
Confidence            9999322 22221 222   357999999875

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=93.89  E-value=0.083  Score=51.48  Aligned_cols=100  Identities=15%  Similarity=0.186  Sum_probs=50.8

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEc-CchhhHHHHHHHhhhhhhhh---cCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKA---NGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+|||+| +|.||+.+.+.|...=.+++.+.. ..... ...+.+.|......   .+.....+.. .+.++ +..+|+|
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~-~~~vDvV   81 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKI-GKKYKDAVKWIEQGDIPEEVQDLPIVS-TNYED-HKDVDVV   81 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGT-TSBHHHHCCCCSSSSCCHHHHTCBEEC-SSGGG-GTTCSEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhc-CCCHHHhcCcccccccccCCceeEEee-CCHHH-hcCCCEE
Confidence            5899999 899999999987432356777663 22111 01111111100000   0000111111 13344 4789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++|+|... +..+. ...   ++.|+.+|+.+.
T Consensus        82 f~atp~~~-s~~~a-~~~---~~aG~~VId~s~  109 (350)
T 2ep5_A           82 LSALPNEL-AESIE-LEL---VKNGKIVVSNAS  109 (350)
T ss_dssp             EECCCHHH-HHHHH-HHH---HHTTCEEEECSS
T ss_pred             EECCChHH-HHHHH-HHH---HHCCCEEEECCc
Confidence            99998322 22221 222   346777888763

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=93.89  E-value=0.05  Score=52.80  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=24.1

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d  196 (394)
                      +|||+|+|+||+.+.|.+... +++|.+.+
T Consensus         2 kVgInG~G~IGr~vlr~l~~~-~~evvain   30 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSR-GVEVALIN   30 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCEEEEEe
Confidence            799999999999999987444 88887544

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.87  E-value=0.098  Score=51.17  Aligned_cols=95  Identities=16%  Similarity=0.114  Sum_probs=57.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc---cCCHHH----Hhc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDE----VLR  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e----ll~  235 (394)
                      .|.+|.|+|.|.+|...++.+ +.+| .+|++.+++..+..  +       ++..|........   ..++.+    +..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNRLK--L-------AEEIGADLTLNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHHHH--H-------HHHTTCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHH-HHcCCceEEEEcCCHHHHH--H-------HHHcCCcEEEeccccCcchHHHHHHHHhC
Confidence            478999999999999999985 8999 59999998765421  1       1122321110000   011212    111


Q ss_pred             --ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       236 --~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                        ..|+|+-++.....     -...+..++++..++.++.
T Consensus       265 g~g~Dvvid~~g~~~~-----~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          265 GRGADFILEATGDSRA-----LLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TSCEEEEEECSSCTTH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence              47888888753211     1345666778878887754

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.85  E-value=0.1  Score=46.89  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcC--CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhccc
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~a  237 (394)
                      ..++++.|.| .|.||+.+++.|+ ..  |.+|++.+|+.... +.        + ..+....  ......+++++++..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~-~~~~g~~V~~~~r~~~~~-~~--------~-~~~~~~~~~D~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGK-EK--------I-GGEADVFIGDITDADSINPAFQGI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHH-HTTTTCEEEEEESCHHHH-HH--------T-TCCTTEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHH-hcCCCcEEEEEEcCCCch-hh--------c-CCCeeEEEecCCCHHHHHHHHcCC
Confidence            3578999998 6999999999984 55  89999999976432 11        0 0011000  011123466788899


Q ss_pred             CEEEEcCCC
Q 016162          238 DVISLHPVL  246 (394)
Q Consensus       238 DiV~l~lPl  246 (394)
                      |+|+.+...
T Consensus        71 d~vi~~a~~   79 (253)
T 1xq6_A           71 DALVILTSA   79 (253)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeccc
Confidence            999887653

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=93.84  E-value=0.2  Score=47.63  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=56.2

Q ss_pred             CeEEEEe-cChHHHHHHHHHHh-cCCcEEEEEcC--chhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~-~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+|+|+| .|.+|+.++..|+. +..-++..+|+  .... .+.......+... .. ....... .+ .+.++.||+|+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~-~~~~~~dl~~~~~-~~-~~~~v~~-~~-~~a~~~aDvVi   75 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD-TVGQAADTNHGIA-YD-SNTRVRQ-GG-YEDTAGSDVVV   75 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH-HHHHHHHHHHHHT-TT-CCCEEEE-CC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh-HHHHHHHHHHHHh-hC-CCcEEEe-CC-HHHhCCCCEEE
Confidence            3799999 99999999988743 22337888998  5432 1111111111000 00 1111111 23 56799999999


Q ss_pred             EcCCCChh---hh-hc--cc----H---HHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLDKT---TY-HL--IN----K---ERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt~~---t~-~l--i~----~---~~l~~mk~gailIN~aR  273 (394)
                      ++......   ++ .+  .|    .   +.+....+.+++++++.
T Consensus        76 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN  120 (303)
T 1o6z_A           76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (303)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            88753221   11 01  11    1   22333467899999754

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.80  E-value=0.058  Score=49.69  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+.||++.|.|.   |.||+.+|+.|+ ..|++|++.+|+..
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHH-HHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            578999999997   699999999984 66999999998763

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.78  E-value=0.16  Score=48.13  Aligned_cols=109  Identities=13%  Similarity=0.104  Sum_probs=70.5

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +.|++|.|+|........++.| ...|.+|..+.-....        |         ...+.....++.+.++++|+|+.
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L-~~~g~~v~~~~~~~~~--------~---------~~~g~~~~~~~~~~~~~~d~ii~   66 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKL-TEQQADIYLVGFDQLD--------H---------GFTGAVKCNIDEIPFQQIDSIIL   66 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHH-HHTTCEEEEESCTTSS--------C---------CCTTEEECCGGGSCGGGCSEEEC
T ss_pred             ccCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeccccc--------c---------ccccceeccchHHHHhcCCEEEe
Confidence            6788999999999999999998 6789998876321110        0         00011122356677889999987


Q ss_pred             cCCCCh----------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016162          243 HPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (394)
Q Consensus       243 ~lPlt~----------~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~ga  294 (394)
                      ..|...          .+...++++.++.++++.+++ +   ++ |..++.+++.+..+.-.
T Consensus        67 ~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~-~---g~-~~~d~~~~~~~~gi~v~  123 (300)
T 2rir_A           67 PVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF-S---GI-SNAYLENIAAQAKRKLV  123 (300)
T ss_dssp             CSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE-E---SS-CCHHHHHHHHHTTCCEE
T ss_pred             ccccccCCcccccccccCCccchHHHHhhcCCCCEEE-E---ec-CCHHHHHHHHHCCCEEE
Confidence            554321          223347889999999998887 2   33 56665555555545443

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.75  E-value=0.099  Score=50.36  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=57.1

Q ss_pred             CCCeEEEE-ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----cc
Q 016162          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (394)
Q Consensus       164 ~gktvGII-GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (394)
                      .|++|.|+ |.|.||...++.+ +.+|++|++.+++..+. + +..       ..|.... .....++.+.+.     ..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~-~~~-------~lGa~~v-i~~~~~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIA-KAYGLRVITTASRNETI-E-WTK-------KMGADIV-LNHKESLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCSHHHH-H-HHH-------HHTCSEE-ECTTSCHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-HHH-------hcCCcEE-EECCccHHHHHHHhCCCCc
Confidence            68999999 7999999999985 89999999999876542 1 111       1222111 111123333322     36


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|+-|+.. +.+    -...+..++++..+|.++
T Consensus       219 Dvv~d~~g~-~~~----~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          219 DYVFCTFNT-DMY----YDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEEEESSCH-HHH----HHHHHHHEEEEEEEEESS
T ss_pred             cEEEECCCc-hHH----HHHHHHHhccCCEEEEEC
Confidence            888777651 111    134456677777777664

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=93.64  E-value=0.18  Score=51.24  Aligned_cols=76  Identities=17%  Similarity=0.300  Sum_probs=45.6

Q ss_pred             CeEEEEecChHHHHH--HHHHHh--cC---CcEEEEEcCchhhHHHHHHHhhhhh-hhhcCCCCccccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAY--ARMMVE--GF---KMNLIYYDLYQATRLEKFVTAYGQF-LKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~v--A~~la~--~~---G~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .||+|||.|++|...  ..-++.  .+   +.++..+|..........  ..... ....+ ....+....|.++.++.|
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~--~~~~~~~~~~~-~~~~i~~t~d~~eAl~gA   77 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASY--ILARKYVEELN-SPVKVVKTESLDEAIEGA   77 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHH--HHHHHHHHHHT-CCCEEEEESCHHHHHTTC
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHH--HHHHHHHHHcC-CCeEEEEeCCHHHHhCCC
Confidence            379999999998652  221222  23   458999999875421111  01111 11122 233344557899999999


Q ss_pred             CEEEEcC
Q 016162          238 DVISLHP  244 (394)
Q Consensus       238 DiV~l~l  244 (394)
                      |+|+++.
T Consensus        78 D~Vi~~~   84 (477)
T 3u95_A           78 DFIINTA   84 (477)
T ss_dssp             SEEEECC
T ss_pred             CEEEECc
Confidence            9999886

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.63  E-value=0.11  Score=51.10  Aligned_cols=98  Identities=15%  Similarity=0.064  Sum_probs=61.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HHHh----c--
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL----R--  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell----~--  235 (394)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++..+. + +       ++..|.. .......++ .+.+    .  
T Consensus       185 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~-~-~-------a~~lGa~-~i~~~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGA-RLLGAACVIVGDQNPERL-K-L-------LSDAGFE-TIDLRNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH-H-H-------HHTTTCE-EEETTSSSCHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHH-H-H-------HHHcCCc-EEcCCCcchHHHHHHHHhCCC
Confidence            588999999999999999984 88999 999999876542 1 1       1222321 111111221 2222    1  


Q ss_pred             ccCEEEEcCCCChh----------hhhcccHHHHhcCCCCcEEEEcCC
Q 016162          236 EADVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~----------t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ..|+|+-++.....          .... -...+..++++..++.++.
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCSC
T ss_pred             CCCEEEECCCCccccccccccccccHHH-HHHHHHHHhcCCEEEEecc
Confidence            48999988864210          0001 2456777888888888764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=93.63  E-value=0.072  Score=49.10  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .+.||++.|.|.   |.||+.+|+.| ...|++|++.+|+.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEcCcH
Confidence            478999999997   69999999998 47799999999876

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.58  E-value=0.088  Score=50.49  Aligned_cols=95  Identities=17%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcc-ccccCCHHHHhc-----c
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLR-----E  236 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~-----~  236 (394)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++.... +...+       ..|..... .....++.+.+.     .
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a-~~~G~~V~~~~~~~~~~-~~~~~-------~~g~~~~~d~~~~~~~~~~~~~~~~~~  225 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLA-KMMGCYVVGSAGSKEKV-DLLKT-------KFGFDDAFNYKEESDLTAALKRCFPNG  225 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHH-------TSCCSEEEETTSCSCSHHHHHHHCTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH-------HcCCceEEecCCHHHHHHHHHHHhCCC
Confidence            5889999997 99999999985 78999999999876542 11110       12221110 001113333332     4


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+.+...  .    .-...+..++++..++.++-
T Consensus       226 ~d~vi~~~g~--~----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          226 IDIYFENVGG--K----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEEEESSCH--H----HHHHHHTTEEEEEEEEECCC
T ss_pred             CcEEEECCCH--H----HHHHHHHHHhcCCEEEEEcc
Confidence            7888888752  1    12456777888888888754

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.53  E-value=0.18  Score=49.53  Aligned_cols=100  Identities=20%  Similarity=0.126  Sum_probs=60.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (394)
                      .|.+|.|+|.|.||...++. ++.+|+ +|++.|++..+. + +       ++..|...+......++.+.+      ..
T Consensus       185 ~g~~VlV~GaG~vG~~aiql-Ak~~Ga~~Vi~~~~~~~~~-~-~-------a~~lGa~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAAS-ARLLGAAVVIVGDLNPARL-A-H-------AKAQGFEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEEESCHHHH-H-H-------HHHTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHCCCCeEEEEcCCHHHH-H-H-------HHHcCCcEEccCCcchHHHHHHHHhCCCC
Confidence            57899999999999999998 489999 799999876542 1 1       122233111111111233222      14


Q ss_pred             cCEEEEcCCCChhh-----hh-----cccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTT-----YH-----LINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t-----~~-----li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-++......     .+     -.-...+..++++..++.++-
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            79999888642100     00     011456677888888888763

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=93.52  E-value=0.11  Score=50.05  Aligned_cols=72  Identities=22%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc---cCCHHHHhcccC
Q 016162          165 GQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREAD  238 (394)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aD  238 (394)
                      ..+|+|+| .|.+|..++..|+ ..|  .+|..+|........  .+     +.+... ......   ..++++.++.||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~-~~g~~~ev~l~Di~~~~~~~--~d-----L~~~~~-~~~v~~~~~t~d~~~al~gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMK-MNPLVSVLHLYDVVNAPGVT--AD-----ISHMDT-GAVVRGFLGQQQLEAALTGMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHH-HCTTEEEEEEEESSSHHHHH--HH-----HHTSCS-SCEEEEEESHHHHHHHHTTCS
T ss_pred             CCEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEeCCCcHhHH--HH-----hhcccc-cceEEEEeCCCCHHHHcCCCC
Confidence            35899999 8999999999874 456  689999976542111  00     111111 111111   236778899999


Q ss_pred             EEEEcCC
Q 016162          239 VISLHPV  245 (394)
Q Consensus       239 iV~l~lP  245 (394)
                      +|+++.+
T Consensus        79 vVi~~ag   85 (326)
T 1smk_A           79 LIIVPAG   85 (326)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999976

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.52  E-value=0.046  Score=50.72  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=31.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+++|.|.|.|.||+.+++.| ...|.+|++.+|...
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRL-TAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHH-HHTTCCEEEEECTTS
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            367999999999999999998 577999999998754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=93.52  E-value=0.12  Score=49.94  Aligned_cols=37  Identities=14%  Similarity=0.015  Sum_probs=32.7

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+++.|+| .|.||..+++.+ +..|++|++.+++...
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~Vi~~~~~~~~  199 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKK  199 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            588999999 799999999986 7899999999987654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.50  E-value=0.15  Score=48.91  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=60.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH----Hhc--c
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--E  236 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--~  236 (394)
                      .|.+|.|+|.|.+|...++.+ +.. |.+|++.|++.++..  +       ++..|...... ...++.+    +..  .
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla-~~~g~~~Vi~~~~~~~~~~--~-------~~~lGa~~~i~-~~~~~~~~v~~~t~g~g  239 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQIL-RAVSAARVIAVDLDDDRLA--L-------AREVGADAAVK-SGAGAADAIRELTGGQG  239 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESCHHHHH--H-------HHHTTCSEEEE-CSTTHHHHHHHHHGGGC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--H-------HHHcCCCEEEc-CCCcHHHHHHHHhCCCC
Confidence            588999999999999999885 776 789999998875431  1       12223222111 1112222    222  5


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-++.. +.+    -...+..++++..++.++-
T Consensus       240 ~d~v~d~~G~-~~~----~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          240 ATAVFDFVGA-QST----IDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             EEEEEESSCC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             CeEEEECCCC-HHH----HHHHHHHHhcCCEEEEECC
Confidence            8899888863 222    1455677888888888763

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=93.49  E-value=0.1  Score=49.76  Aligned_cols=107  Identities=18%  Similarity=0.112  Sum_probs=62.8

Q ss_pred             cCCC-eEEEEec-ChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--c-
Q 016162          163 LKGQ-TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E-  236 (394)
Q Consensus       163 l~gk-tvGIIGl-G~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~-  236 (394)
                      +.-+ ++.|+|. |++|+.+++.+ ...|++ |..++|..... +              .  .+...+.+++++..  . 
T Consensus        10 ~~~~~~vvV~Gasg~~G~~~~~~l-~~~g~~~v~~VnP~~~g~-~--------------i--~G~~vy~sl~el~~~~~~   71 (297)
T 2yv2_A           10 VDSETRVLVQGITGREGSFHAKAM-LEYGTKVVAGVTPGKGGS-E--------------V--HGVPVYDSVKEALAEHPE   71 (297)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-E--------------E--TTEEEESSHHHHHHHCTT
T ss_pred             hCCCCEEEEECCCCCHHHHHHHHH-HhCCCcEEEEeCCCCCCc-e--------------E--CCEeeeCCHHHHhhcCCC
Confidence            3334 4677798 99999999987 566887 44566543100 0              0  12234578999887  5 


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l  291 (394)
                      .|++++++|. +.+...+ ++..+ ..-. .+|..+.|=. .+++.|.++.++..+
T Consensus        72 ~DvaIi~vp~-~~~~~~v-~ea~~-~Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi  123 (297)
T 2yv2_A           72 INTSIVFVPA-PFAPDAV-YEAVD-AGIR-LVVVITEGIPVHDTMRFVNYARQKGA  123 (297)
T ss_dssp             CCEEEECCCG-GGHHHHH-HHHHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEecCH-HHHHHHH-HHHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9999999993 3333333 22222 2222 2444555422 345678887776544

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=93.49  E-value=0.38  Score=46.93  Aligned_cols=96  Identities=13%  Similarity=0.174  Sum_probs=56.9

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +-.+||||| .|.+|+++.++|..-=..++......... -..+.+.|.. ++    ....+.. .+.++++.++|+|++
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~a-G~~~~~~~p~-~~----~~l~~~~-~~~~~~~~~~Dvvf~   84 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA-GKKLEEIFPS-TL----ENSILSE-FDPEKVSKNCDVLFT   84 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT-TSBHHHHCGG-GC----CCCBCBC-CCHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccc-cCChHHhChh-hc----cCceEEe-CCHHHhhcCCCEEEE
Confidence            446899996 79999999999843224566655432211 0111111111 11    1122222 356676688999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|....      .+....+ .|+.+||.|.
T Consensus        85 alp~~~s------~~~~~~~-~g~~VIDlSs  108 (351)
T 1vkn_A           85 ALPAGAS------YDLVREL-KGVKIIDLGA  108 (351)
T ss_dssp             CCSTTHH------HHHHTTC-CSCEEEESSS
T ss_pred             CCCcHHH------HHHHHHh-CCCEEEECCh
Confidence            9994432      3444445 7999999984

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=93.48  E-value=0.07  Score=51.75  Aligned_cols=102  Identities=14%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcC---------CcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGF---------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~---------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (394)
                      .+|||||+|.||+.+++.+. ..         +++|. ++|++..+.              .+. +. .....|+++++ 
T Consensus         4 irvgIiG~G~VG~~~~~~l~-~~~~~l~~~g~~~~lvaV~d~~~~~~--------------~~~-~~-~~~~~d~~~ll-   65 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVL-ERAEELSAFGVVPRFLGVLVRDPRKP--------------RAI-PQ-ELLRAEPFDLL-   65 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HTGGGGGGGTEEEEEEEEECSCTTSC--------------CSS-CG-GGEESSCCCCT-
T ss_pred             eEEEEEcCCHHHHHHHHHHH-hChhhHhhcCCCEEEEEEEECCHHHh--------------hcc-Cc-ccccCCHHHHh-
Confidence            37999999999999998873 33         45654 567664321              011 11 11235777888 


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN  289 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g  289 (394)
                      +.|+|+.|+|........    ..+.++.|.-+|...-..+ -.-+.|.++.++.
T Consensus        66 ~iDvVve~t~~~~~a~~~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           66 EADLVVEAMGGVEAPLRL----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             TCSEEEECCCCSHHHHHH----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             CCCEEEECCCCcHHHHHH----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            999999999854221111    1223445555555321111 3556777776665

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.44  E-value=0.13  Score=49.01  Aligned_cols=37  Identities=16%  Similarity=0.122  Sum_probs=32.4

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+++.|+|. |.||..+++.+ +..|++|++.+++...
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~Vi~~~~~~~~  182 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWA-RHLGATVIGTVSTEEK  182 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            5789999995 99999999986 7899999999998643

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.42  E-value=0.26  Score=47.15  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|.+|.|+|.|.+|...+..+++..|.+|++.|++..+
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r  200 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDK  200 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHH
Confidence            47899999999999999988644678999999988764

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=93.33  E-value=0.15  Score=45.11  Aligned_cols=71  Identities=14%  Similarity=0.133  Sum_probs=47.1

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccc-cCCHHHHhcccCEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKR-ASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~ell~~aDiV~  241 (394)
                      ++|.|+| .|.||+.+++.| ...|.+|++.+|+......         +  .+....  .... ..++.++++.+|+|+
T Consensus         1 M~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~---------~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi   68 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQ---------Y--NNVKAVHFDVDWTPEEMAKQLHGMDAII   68 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCC---------C--TTEEEEECCTTSCHHHHHTTTTTCSEEE
T ss_pred             CeEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhh---------c--CCceEEEecccCCHHHHHHHHcCCCEEE
Confidence            3789998 899999999998 5779999999998754210         0  000000  0111 124556788899999


Q ss_pred             EcCCCCh
Q 016162          242 LHPVLDK  248 (394)
Q Consensus       242 l~lPlt~  248 (394)
                      .+.....
T Consensus        69 ~~ag~~~   75 (219)
T 3dqp_A           69 NVSGSGG   75 (219)
T ss_dssp             ECCCCTT
T ss_pred             ECCcCCC
Confidence            8876543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.32  E-value=0.097  Score=50.64  Aligned_cols=95  Identities=13%  Similarity=0.121  Sum_probs=57.4

Q ss_pred             cCCCeEEEEecChHHHHH-HHHHH-hcCCcE-EEEEcCchh---hHHHHHHHhhhhhhhhcCCCCccccccCCHHH---H
Q 016162          163 LKGQTVGVIGAGRIGSAY-ARMMV-EGFKMN-LIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---V  233 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~v-A~~la-~~~G~~-V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---l  233 (394)
                      ..+.+|.|+|.|.||... ++. + +.+|++ |++.+++..   +. + +.+.       .|.... .....++.+   +
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iql-a~k~~Ga~~Vi~~~~~~~~~~~~-~-~~~~-------lGa~~v-~~~~~~~~~i~~~  239 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAML-KVDDKGYENLYCLGRRDRPDPTI-D-IIEE-------LDATYV-DSRQTPVEDVPDV  239 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHH-HHCTTCCCEEEEEECCCSSCHHH-H-HHHH-------TTCEEE-ETTTSCGGGHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHHHcCCcEEEEEeCCcccHHHH-H-HHHH-------cCCccc-CCCccCHHHHHHh
Confidence            345899999999999999 887 6 789997 999998765   32 1 1122       222111 111122222   2


Q ss_pred             hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      -...|+|+-++.. +.+    -...+..++++..++.++.
T Consensus       240 ~gg~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          240 YEQMDFIYEATGF-PKH----AIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             SCCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCC-hHH----HHHHHHHHhcCCEEEEEeC
Confidence            0146888877752 222    1345666777877877753

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.30  E-value=0.14  Score=51.61  Aligned_cols=108  Identities=13%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHh---------cCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh
Q 016162          165 GQTVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~---------~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (394)
                      -.+|||||+|.||+.+++.+.+         +.+.+|. ++|++.... ..+.         .+     ...+.++++++
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~-~~~~---------~~-----~~~~~d~~ell   74 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA-EALA---------GG-----LPLTTNPFDVV   74 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH-HHHH---------TT-----CCEESCTHHHH
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh-hhhc---------cc-----CcccCCHHHHh
Confidence            3589999999999999876531         2566655 567765432 1110         01     11246889998


Q ss_pred             c--ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016162          235 R--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (394)
Q Consensus       235 ~--~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~l  291 (394)
                      .  +.|+|+.|+|.......+    ....++.|.-++..--+-. -+-+.|.++.++..+
T Consensus        75 ~d~diDvVve~tp~~~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv  130 (444)
T 3mtj_A           75 DDPEIDIVVELIGGLEPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGV  130 (444)
T ss_dssp             TCTTCCEEEECCCSSTTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCEEEEcCCCchHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCC
Confidence            6  579999999952221222    1344556666664422211 223677777766544

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=93.29  E-value=0.2  Score=50.51  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=31.5

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEE-EEcC
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDL  197 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~  197 (394)
                      |.+++|+||.|-|+|++|+..|+.| ...|++|+ +.|.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L-~e~GakvVavsD~  271 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKL-IEKGAIVLTMSDS  271 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHH-HHHTCCBCCEECS
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECC
Confidence            3579999999999999999999997 68899986 4553

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.27  E-value=0.2  Score=46.56  Aligned_cols=75  Identities=9%  Similarity=0.069  Sum_probs=46.7

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCch-------hhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHh
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ-------ATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVL  234 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell  234 (394)
                      +++|.|+|. |.||+.+++.| ...|.+|++.+|..       .. ... ...    +...+....  ......++.+++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~-~~~-~~~----l~~~~v~~v~~D~~d~~~l~~~~   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWAS-IKAGNPTYALVRKTITAANPETK-EEL-IDN----YQSLGVILLEGDINDHETLVKAI   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHHTCCEEEEECCSCCSSCHHHH-HHH-HHH----HHHTTCEEEECCTTCHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHH-HhCCCcEEEEECCCcccCChHHH-HHH-HHH----HHhCCCEEEEeCCCCHHHHHHHH
Confidence            578999996 99999999998 46688999998875       21 111 000    111121111  011123466778


Q ss_pred             cccCEEEEcCCC
Q 016162          235 READVISLHPVL  246 (394)
Q Consensus       235 ~~aDiV~l~lPl  246 (394)
                      +.+|+|+.+.+.
T Consensus        75 ~~~d~vi~~a~~   86 (307)
T 2gas_A           75 KQVDIVICAAGR   86 (307)
T ss_dssp             TTCSEEEECSSS
T ss_pred             hCCCEEEECCcc
Confidence            889999888764

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.23  E-value=0.14  Score=49.39  Aligned_cols=93  Identities=16%  Similarity=0.147  Sum_probs=57.3

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----ccC
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  238 (394)
                      +++.|.|. |.||..+++.+ +..|+ +|++.+++.... +...+.       .|..........+..+.+.     ..|
T Consensus       162 ~~vlI~GasggiG~~~~~~a-~~~Ga~~Vi~~~~~~~~~-~~~~~~-------~g~~~~~d~~~~~~~~~~~~~~~~~~d  232 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIG-HFLGCSRVVGICGTHEKC-ILLTSE-------LGFDAAINYKKDNVAEQLRESCPAGVD  232 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHHHT-------SCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             cEEEEECCCcHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHH-------cCCceEEecCchHHHHHHHHhcCCCCC
Confidence            89999998 99999999986 78999 999999876442 111111       1221110011123333332     378


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+.+..  ..+    -...+..++++..++.++.
T Consensus       233 ~vi~~~G--~~~----~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          233 VYFDNVG--GNI----SDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             EEEESCC--HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCC--HHH----HHHHHHHhccCcEEEEECC
Confidence            8887775  111    2456677788888887754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.21  E-value=0.13  Score=47.33  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .++|.|.|.|.||+.+++.| ..-|.+|++.+|+.......         ...+..... ....+++  +..+|+|+.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~-~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRAL-APQGWRIIGTSRNPDQMEAI---------RASGAEPLL-WPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHH-GGGTCEEEEEESCGGGHHHH---------HHTTEEEEE-SSSSCCC--CTTCCEEEECC
T ss_pred             cCcEEEECCcHHHHHHHHHH-HHCCCEEEEEEcChhhhhhH---------hhCCCeEEE-ecccccc--cCCCCEEEECC
Confidence            37899999999999999998 57799999999987542111         111110000 1123343  78899998887


Q ss_pred             CCC
Q 016162          245 VLD  247 (394)
Q Consensus       245 Plt  247 (394)
                      ...
T Consensus        72 ~~~   74 (286)
T 3ius_A           72 APD   74 (286)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.19  E-value=0.19  Score=48.61  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+++.|+|. |.||..+++.+ +..|++|++.+++...
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a-~~~Ga~Vi~~~~~~~~  207 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEG  207 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CcCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChhH
Confidence            4889999998 99999999986 7899999999987654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=93.12  E-value=0.093  Score=48.71  Aligned_cols=41  Identities=22%  Similarity=0.085  Sum_probs=33.4

Q ss_pred             ccccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       160 g~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ...+.||++.|.|. |.||+++|+.| ...|++|++.++....
T Consensus        23 ~~~l~~k~vlVTGas~gIG~aia~~l-a~~G~~V~~~~~~~~~   64 (269)
T 4dmm_A           23 ALPLTDRIALVTGASRGIGRAIALEL-AAAGAKVAVNYASSAG   64 (269)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCChH
Confidence            35789999999975 78999999998 5789999998875443

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=93.09  E-value=0.12  Score=50.05  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhc-----C--CcEEE-EEcCchhhHHH-----HHHHhhhhhhhhcCCCCccccccC---C
Q 016162          166 QTVGVIGAGRIGSAYARMMVEG-----F--KMNLI-YYDLYQATRLE-----KFVTAYGQFLKANGEQPVTWKRAS---S  229 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-----~--G~~V~-~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~  229 (394)
                      .+|||||+|.||+.+++.+.+.     .  +++|. ++|++.....+     .+.+.+    .. +  ... ....   +
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~----~~-~--~~~-~~~~~~~d   78 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYK----EK-G--SLD-SLEYESIS   78 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHH----HT-T--CGG-GCCSEECC
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhh----cc-C--Ccc-cccCCCCC
Confidence            4799999999999999887431     1  45654 56766532111     011100    00 0  000 0123   7


Q ss_pred             HHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCC
Q 016162          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNP  290 (394)
Q Consensus       230 l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~~aL~~g~  290 (394)
                      +++++ .+.|+|+.|+|.. .|.+.--+-....++.|.-+|...-..+ .+-+.|.++.++..
T Consensus        79 ~~~ll~~~iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~g  140 (331)
T 3c8m_A           79 ASEALARDFDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNN  140 (331)
T ss_dssp             HHHHHHSSCSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcC
Confidence            88887 4589999999964 1111111223344566776766433222 23456676665544

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.02  E-value=0.24  Score=46.43  Aligned_cols=74  Identities=12%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcc--ccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDiV~l  242 (394)
                      ++|.|+| .|.||+.+++.| ..-|.+|++.+|......... ..    +...+.....  .....++.++++.+|+|+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~-~~----l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGS-LKLGHPTYVFTRPNSSKTTLL-DE----FQSLGAIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHH-HHTTCCEEEEECTTCSCHHHH-HH----HHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHH-HHCCCcEEEEECCCCchhhHH-HH----hhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            5899999 599999999998 567899999998764211100 00    0111211110  1112346677889999988


Q ss_pred             cCC
Q 016162          243 HPV  245 (394)
Q Consensus       243 ~lP  245 (394)
                      +.+
T Consensus        86 ~a~   88 (318)
T 2r6j_A           86 ALA   88 (318)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            876

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=92.96  E-value=0.61  Score=47.45  Aligned_cols=114  Identities=19%  Similarity=0.232  Sum_probs=69.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEE--------cCchh--hHHHHHHHhhhhhhhhcCCCCccccccCCHH
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~--------d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (394)
                      ++.|+||.|-|+|++|+..|+.| ...|++|++.        |+..-  ..+.+..+..+..   .+....  ....+  
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L-~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i---~~~~~a--~~~~~--  312 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYL-HRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTI---LGFPKA--KIYEG--  312 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSS---TTCTTS--EEECS--
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCe---ecccCc--eeecc--
Confidence            58999999999999999999997 6899999873        33211  1222222211100   000000  11111  


Q ss_pred             HHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       232 ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +++ ..||+.+=|.-     .+.|+.+....++ -.+++..|.+.+ ..+| .+.|.+..+
T Consensus       313 ~il~~~~DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGI  365 (501)
T 3mw9_A          313 SILEVDCDILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNI  365 (501)
T ss_dssp             CGGGSCCSEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred             ccccccceEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCC
Confidence            333 57999987754     5778888777775 568888888874 5554 345655443

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=92.94  E-value=0.53  Score=47.75  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCc---EEEEEcCch
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ  199 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~---~V~~~d~~~  199 (394)
                      ++|.|||+|.||+.+|+.+++..++   .|++.|+..
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~   50 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEG   50 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence            4699999999999999998776666   577777653

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.92  E-value=0.35  Score=46.87  Aligned_cols=92  Identities=13%  Similarity=0.180  Sum_probs=58.3

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhc-CCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----c
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (394)
                      .|.+|.|+| .|.||...++.+ +. .|++|++.+++..+. + +       +++.|.... .....++.+.+.     .
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qla-k~~~g~~Vi~~~~~~~~~-~-~-------~~~lGad~v-i~~~~~~~~~v~~~~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIA-RQRTDLTVIATASRPETQ-E-W-------VKSLGAHHV-IDHSKPLAAEVAALGLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHH-HHHCCSEEEEECSSHHHH-H-H-------HHHTTCSEE-ECTTSCHHHHHHTTCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHhcCCEEEEEeCCHHHH-H-H-------HHHcCCCEE-EeCCCCHHHHHHHhcCCC
Confidence            688999999 999999999985 76 599999999976542 1 1       122232211 111123433332     4


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      .|+|+-|+.. +.+   + ...++.++++..++.+
T Consensus       240 ~Dvvid~~g~-~~~---~-~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          240 PAFVFSTTHT-DKH---A-AEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEEECSCH-HHH---H-HHHHHHSCTTCEEEEC
T ss_pred             ceEEEECCCc-hhh---H-HHHHHHhcCCCEEEEE
Confidence            7888877651 111   1 4556778888888876

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.88  E-value=0.15  Score=47.50  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=31.0

Q ss_pred             cccccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       159 ~g~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ...++.||++.|.| -|.||+.+|+.| ...|++|++.+|+.
T Consensus        17 ~~~~l~~k~~lVTGas~gIG~aia~~L-~~~G~~V~~~~r~~   57 (288)
T 2x9g_A           17 RGSHMEAPAAVVTGAAKRIGRAIAVKL-HQTGYRVVIHYHNS   57 (288)
T ss_dssp             -----CCCEEEETTCSSHHHHHHHHHH-HHHTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCeEEEEeCCc
Confidence            34568999998886 579999999998 46799999999886

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.87  E-value=0.22  Score=48.56  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=31.8

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~  199 (394)
                      ..|++++|.|||.|.+|..+|+.|+ ..|. ++..+|+..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La-~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILA-TSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-hCCCCeEEEECCCc
Confidence            4688999999999999999999985 5565 788888753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.86  E-value=0.29  Score=46.97  Aligned_cols=95  Identities=15%  Similarity=0.148  Sum_probs=58.6

Q ss_pred             CCCeEEEEecC-hHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC----HHHHh--c
Q 016162          164 KGQTVGVIGAG-RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVL--R  235 (394)
Q Consensus       164 ~gktvGIIGlG-~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell--~  235 (394)
                      .|+++.|+|.| .||..+++.+ +.. |++|++.+++......  .+.+       |..........+    +.++.  .
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a-~~~~Ga~Vi~~~~~~~~~~~--~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~  239 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVEA--AKRA-------GADYVINASMQDPLAEIRRITESK  239 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHHH--HHHH-------TCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCccHHHHHHHHH-HHcCCCeEEEEcCCHHHHHH--HHHh-------CCCEEecCCCccHHHHHHHHhcCC
Confidence            57899999999 9999999986 677 9999999987654211  1111       211110001112    23333  2


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ..|+|+.+... +.+.    ...+..++++..++.++.
T Consensus       240 ~~d~vi~~~g~-~~~~----~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          240 GVDAVIDLNNS-EKTL----SVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             CEEEEEESCCC-HHHH----TTGGGGEEEEEEEEECCS
T ss_pred             CceEEEECCCC-HHHH----HHHHHHHhcCCEEEEECC
Confidence            57888888752 2111    334566788888888764

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=92.84  E-value=0.071  Score=47.95  Aligned_cols=75  Identities=12%  Similarity=0.121  Sum_probs=49.6

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCC--CccccccCCHHHHhccc
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREA  237 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~a  237 (394)
                      +.++++.|.| .|.||+.+++.| ...|.  +|++.+|+.......         ...+..  ........+++++++..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L-~~~G~~~~V~~~~r~~~~~~~~---------~~~~~~~~~~D~~d~~~~~~~~~~~   85 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEI-LEQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH   85 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHH-HHHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHH-HcCCCCCEEEEEEcCCCCcccc---------ccCCceEEecCcCCHHHHHHHhcCC
Confidence            5688999999 699999999998 46788  999999876431100         000000  00111223566778889


Q ss_pred             CEEEEcCCCC
Q 016162          238 DVISLHPVLD  247 (394)
Q Consensus       238 DiV~l~lPlt  247 (394)
                      |+|+.+....
T Consensus        86 d~vi~~ag~~   95 (242)
T 2bka_A           86 DVGFCCLGTT   95 (242)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCcc
Confidence            9999988654

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=92.83  E-value=0.62  Score=45.43  Aligned_cols=107  Identities=14%  Similarity=0.182  Sum_probs=63.6

Q ss_pred             cccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc--C-CCCccccccCCHHHHhcc
Q 016162          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN--G-EQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       161 ~~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~ell~~  236 (394)
                      ..+.|.+|+++|=| ++..+.+..+ ..||++|.+..|..-...+...+    .++..  + ..+..+....+++|.++.
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l-~~lG~~v~~~~P~~~~~~~~i~~----~~~~~a~~~~~g~~~~~~~d~~eav~~  258 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAA-TKMGVNVAVATPRGYEIPSHIVE----LIQKAREGVQSPGNLTQTTVPEVAVKD  258 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHH----HHHHHHTTCSSCCCEEEESCHHHHTTT
T ss_pred             cccCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHH----HHHHhhhhccCCCeEEEECCHHHHhcC
Confidence            45899999999965 4666666665 57999999998753211111111    01110  0 111223345799999999


Q ss_pred             cCEEEEcC--CCChh----------hhhcccHHHHhc--CCCCcEEEEcC
Q 016162          237 ADVISLHP--VLDKT----------TYHLINKERLAT--MKKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~l--Plt~~----------t~~li~~~~l~~--mk~gailIN~a  272 (394)
                      +|+|..-.  +...+          ...-++.+.++.  +|++++|.-|.
T Consensus       259 aDVvytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          259 ADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             CSEEEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             CCEEEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            99997632  21111          013467777777  77787777763

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=92.76  E-value=0.54  Score=44.80  Aligned_cols=96  Identities=17%  Similarity=0.098  Sum_probs=59.6

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------c
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  235 (394)
                      ..|++|.|+|.|.+|...++.+ +..|++ +++.|++..+. + +       +++.|..........+..+..      .
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~a-k~~G~~~vi~~~~~~~k~-~-~-------a~~lGa~~~i~~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDISSEKL-A-L-------AKSFGAMQTFNSSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHH-H-H-------HHHTTCSEEEETTTSCHHHHHHHHGGGC
T ss_pred             CCCCEEEEECCCCcchHHHHHH-HHcCCcEEEEEechHHHH-H-H-------HHHcCCeEEEeCCCCCHHHHHHhhcccC
Confidence            3588999999999999999885 889985 56788776542 1 1       222333222111223444433      2


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ..|+|+-++. .+.+.    +..++.++++..++.++-
T Consensus       229 g~d~v~d~~G-~~~~~----~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          229 FNQLILETAG-VPQTV----ELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             SSEEEEECSC-SHHHH----HHHHHHCCTTCEEEECCC
T ss_pred             Cccccccccc-ccchh----hhhhheecCCeEEEEEec
Confidence            3677777765 23322    445677888888887763

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=92.74  E-value=0.17  Score=48.14  Aligned_cols=111  Identities=15%  Similarity=0.221  Sum_probs=60.5

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .||+|||.|.||+.+|-.|+. ++--++..||.......-...+ ..+.....+... ......+. +.++.||+|+++.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~D-L~h~~~~~~~~~-~i~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGIDKYP-KIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH-HHHHHGGGTCCC-EEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhh-hhcccccCCCCC-eEecCCCH-HHhCCCCEEEEec
Confidence            479999999999999977632 4445899999876432211111 100000011111 11112233 4689999999885


Q ss_pred             --CCChh-hh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCHHH
Q 016162          245 --VLDKT-TY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVA  281 (394)
Q Consensus       245 --Plt~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vde~a  281 (394)
                        |..|. |+ .++  |.       +.+..-.|+++++.++.  ++|.-.
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN--Pvd~~t  125 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMT  125 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC--cchhhH
Confidence              44442 22 122  22       23344467888888754  444433

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=92.72  E-value=0.66  Score=44.98  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=57.8

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----c
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (394)
                      -.|.+|.|+|. |.+|...++.+ +.+|++|++.. +..+ .+ +.+       ..|..........++.+.+.     .
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla-~~~Ga~Vi~~~-~~~~-~~-~~~-------~lGa~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQML-RLSGYIPIATC-SPHN-FD-LAK-------SRGAEEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEE-CGGG-HH-HHH-------HTTCSEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHH-HHCCCEEEEEe-CHHH-HH-HHH-------HcCCcEEEECCCchHHHHHHHHccCC
Confidence            46899999999 89999999985 89999998875 3322 22 222       22322111111234433332     3


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcC-CCCcEEEEcC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~m-k~gailIN~a  272 (394)
                      .|+|+-|+.. +.+.    ...+..+ +++..++.++
T Consensus       232 ~d~v~d~~g~-~~~~----~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCITN-VEST----TFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSCS-HHHH----HHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECCCc-hHHH----HHHHHHhhcCCCEEEEEe
Confidence            7999888762 2221    3445667 5788888875

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=92.72  E-value=0.091  Score=50.85  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=59.7

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhc-CCCCc--c-ccccCCHHHHhcccC
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV--T-WKRASSMDEVLREAD  238 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~~l~ell~~aD  238 (394)
                      .+++|.|.| .|.||+.+++.| ..-|.+|++.+|+........       +... +....  . .....++.++++.+|
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~-------l~~~~~v~~v~~D~l~d~~~l~~~~~~~d   75 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEE-------LQAIPNVTLFQGPLLNNVPLMDTLFEGAH   75 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHH-------HHTSTTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCChhhHHH-------HhhcCCcEEEECCccCCHHHHHHHHhcCC
Confidence            367899999 599999999998 467899999988765421110       1100 10000  0 111124667789999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCC-C--cEEEEcCCCc
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKK-E--AILVNCSRGP  275 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~-g--ailIN~aRG~  275 (394)
                      +|+.+...............+..+++ |  ..||.+|...
T Consensus        76 ~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           76 LAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            99977654311111222333433322 3  4788887653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=92.66  E-value=0.23  Score=46.20  Aligned_cols=76  Identities=20%  Similarity=0.233  Sum_probs=46.7

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh----HHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhccc
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT----RLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~a  237 (394)
                      .++|.|+|. |.||+.+++.| ...|.+|++.+|....    ........    +...+....  ......++.++++.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~~~----l~~~~v~~v~~D~~d~~~l~~~~~~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTASSNSEKAQLLES----FKASGANIVHGSIDDHASLVEAVKNV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCTTTTHHHHHHHHH----HHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HhCCCCEEEEECCcccccCHHHHHHHHH----HHhCCCEEEEeccCCHHHHHHHHcCC
Confidence            468999996 99999999998 5678999999987421    11110000    111121111  011123466778889


Q ss_pred             CEEEEcCC
Q 016162          238 DVISLHPV  245 (394)
Q Consensus       238 DiV~l~lP  245 (394)
                      |+|+.+.+
T Consensus        79 d~vi~~a~   86 (308)
T 1qyc_A           79 DVVISTVG   86 (308)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCc
Confidence            99988876

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.66  E-value=0.24  Score=46.14  Aligned_cols=40  Identities=18%  Similarity=0.153  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ..+.||++.|.|. |.||+.+|+.| ...|++|++.+++...
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~   65 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARAL-AASGFDIAITGIGDAE   65 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCCHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHH-HHCCCeEEEEeCCCHH
Confidence            5689999999975 78999999998 5789999999864433

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=92.66  E-value=0.069  Score=49.60  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=28.2

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|++.+++.
T Consensus        23 m~~~~k~~lVTGas~GIG~aia~~la-~~G~~Vv~~~~~~   61 (267)
T 3u5t_A           23 MMETNKVAIVTGASRGIGAAIAARLA-SDGFTVVINYAGK   61 (267)
T ss_dssp             ----CCEEEEESCSSHHHHHHHHHHH-HHTCEEEEEESSC
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEcCCC
Confidence            3578999999975 789999999984 6799998875443

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=92.65  E-value=0.22  Score=46.31  Aligned_cols=40  Identities=20%  Similarity=0.157  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ..+.||++.|.| -|.||+.+|+.| ...|++|++.+++...
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMEL-GRRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchH
Confidence            457899998886 678999999998 4779999999887643

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=92.63  E-value=0.25  Score=48.46  Aligned_cols=91  Identities=22%  Similarity=0.295  Sum_probs=49.6

Q ss_pred             CeEEEEe-cChHHHHHHH-HHHhcCC---cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIG-AGRIGSAYAR-MMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~-~la~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++|||+| +|.+|+.+.+ .+ ...+   ..++.+.......      .    ....+.....+....+.++ +..+|+|
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll-~~~~~~~v~i~~~~~~s~G~------~----v~~~~g~~i~~~~~~~~~~-~~~~DvV   69 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMV-EERDFDAIRPVFFSTSQLGQ------A----APSFGGTTGTLQDAFDLEA-LKALDII   69 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTGGGGSEEEEEESSSTTS------B----CCGGGTCCCBCEETTCHHH-HHTCSEE
T ss_pred             cEEEEECCCCHHHHHHHHHHH-hcCCCCeEEEEEEEeCCCCC------C----ccccCCCceEEEecCChHH-hcCCCEE
Confidence            4899999 9999999999 54 4433   3555443321110      0    0000011222222334555 5789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCc--EEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEA--ILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~ga--ilIN~aR  273 (394)
                      +.|+|... +..+. ...+   +.|+  ++|+.+.
T Consensus        70 f~a~g~~~-s~~~a-~~~~---~~G~k~vVID~ss   99 (367)
T 1t4b_A           70 VTCQGGDY-TNEIY-PKLR---ESGWQGYWIDAAS   99 (367)
T ss_dssp             EECSCHHH-HHHHH-HHHH---HTTCCCEEEECSS
T ss_pred             EECCCchh-HHHHH-HHHH---HCCCCEEEEcCCh
Confidence            99998322 22221 2222   4565  8999764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.60  E-value=0.075  Score=50.46  Aligned_cols=39  Identities=13%  Similarity=0.120  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .++.|++|.|.|. |.||+.+++.| ...|.+|++.+|...
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L-~~~g~~V~~~~r~~~   55 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHW-LPQGHEILVIDNFAT   55 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHH-GGGTCEEEEEECCSS
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCc
Confidence            5789999999987 99999999998 577999999998643

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=92.58  E-value=0.35  Score=44.73  Aligned_cols=31  Identities=32%  Similarity=0.592  Sum_probs=23.8

Q ss_pred             eEEEEec-ChHHHHHHHHHHhcCCcEEEE-EcC
Q 016162          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDL  197 (394)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~~G~~V~~-~d~  197 (394)
                      +|+|+|. |+||+.+++.+...-++++.+ +|+
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            7999995 999999999863334888764 443

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.57  E-value=0.08  Score=50.34  Aligned_cols=70  Identities=14%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhccc
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~a  237 (394)
                      ....+++|.|.|. |.||+.+++.| ...|.+|++.+|.....               +....  ......++.+++..+
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~~---------------~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAAL-RTQGRTVRGFDLRPSGT---------------GGEEVVGSLEDGQALSDAIMGV   78 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHH-HHTTCCEEEEESSCCSS---------------CCSEEESCTTCHHHHHHHHTTC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHH-HhCCCEEEEEeCCCCCC---------------CccEEecCcCCHHHHHHHHhCC
Confidence            5788999999997 99999999998 57799999999875420               00000  011123466788999


Q ss_pred             CEEEEcCCC
Q 016162          238 DVISLHPVL  246 (394)
Q Consensus       238 DiV~l~lPl  246 (394)
                      |+|+.+...
T Consensus        79 d~vih~A~~   87 (347)
T 4id9_A           79 SAVLHLGAF   87 (347)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999877653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.57  E-value=0.1  Score=47.98  Aligned_cols=40  Identities=35%  Similarity=0.345  Sum_probs=34.9

Q ss_pred             cccCCCeEEEEec-C-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGA-G-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGl-G-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ..+.||++.|.|. | .||+.+|+.| ...|++|++.+++...
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l-~~~G~~V~~~~r~~~~   59 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRA-LLEGADVVISDYHERR   59 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHH-HHCCCEEEEecCCHHH
Confidence            4689999999998 8 5999999998 5779999999998754

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.55  E-value=0.099  Score=47.38  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=31.5

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      ++.||++.|.| .|.||+.+++.| ...|++|++.+|+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l-~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLF-ARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEECCC
Confidence            47889999986 489999999998 4779999999987

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=92.49  E-value=0.19  Score=46.76  Aligned_cols=40  Identities=28%  Similarity=0.282  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+|+||++.|-|- +.||+++|++|+ ..|++|+.+|++...
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la-~~Ga~Vv~~~~~~~~   43 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFA-LNDSIVVAVELLEDR   43 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            3799999999976 569999999984 789999999998754

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=92.40  E-value=0.13  Score=47.46  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEe---cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIG---lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+.||++.|.|   -|.||+++|+.| ...|++|++.+++...
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l-~~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHH-HHTTCEEEEEECSCHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHH-HHCCCEEEEEecChHH
Confidence            47899999999   599999999998 5779999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	394
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	2e-38
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	2e-27
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	1e-26
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	8e-26
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	6e-25
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	5e-15
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	6e-15
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	7e-15
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	1e-14
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	1e-13
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	2e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	8e-12
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	1e-10
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	2e-09
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	4e-08
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-07
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	3e-06
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	8e-05
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	3e-04

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  135 bits (339), Expect = 2e-38
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           +T  TAE+A  L L +ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238
           A A+   +GF M++ Y+D ++A               ++ E         S+D +L  + 
Sbjct: 61  ALAKRA-QGFDMDIDYFDTHRA--------------SSSDEASYQATFHDSLDSLLSVSQ 105

Query: 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
             SL+      T +  NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DV
Sbjct: 106 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 165

Query: 299 FEDEPYMKPGLSEMKNAIVVPHIASA 324
           F  EP +  G  ++ N  + PHI SA
Sbjct: 166 FAGEPNINEGYYDLPNTFLFPHIGSA 191

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  105 bits (262), Expect = 2e-27
 Identities = 67/202 (33%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
             + AE A +L LAA+R+I  AD  +R      W  + F G  + G+TVGV+G GRIG  
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREH---TWKRSSFSGTEIFGKTVGVVGLGRIGQL 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A+ +   F   ++ YD Y +      +                     S+D++L  AD 
Sbjct: 59  VAQRIAA-FGAYVVAYDPYVSPARAAQLGIE----------------LLSLDDLLARADF 101

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           IS+H      T  LI+KE LA  K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 102 ISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161

Query: 300 EDEPYMKPGLSEMKNAIVVPHI 321
             EP     L E+   +V PH+
Sbjct: 162 ATEPCTDSPLFELAQVVVTPHL 183

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  103 bits (256), Expect = 1e-26
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLY----DGWLPNLFVGNLLKGQTVGVIGAGRI 176
           E TA+      L   RR     + +R G      +           ++G+T+G+IG GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236
           G A A          L Y                              +R S++ ++L  
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERAL----------------GLQRVSTLQDLLFH 104

Query: 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           +D ++LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    L
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 297 DVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           DV E EP+      L +  N I  PH A
Sbjct: 165 DVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  100 bits (250), Expect = 8e-26
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 17/202 (8%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           + AE    + L+  R  + + E+ R G ++     +     L+   VG + AGRIG A  
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           R +   F ++L Y D ++                 + E+ +     ++ +++    DV++
Sbjct: 61  RRL-APFDVHLHYTDRHRLPE--------------SVEKELNLTWHATREDMYPVCDVVT 105

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           L+  L   T H+IN E L   K+ A +VN +RG + D  A+   L+   +     DV+  
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 302 EPYMKPG-LSEMKNAIVVPHIA 322
           +P  K      M    + PHI+
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHIS 187

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 98.5 bits (244), Expect = 6e-25
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 27/208 (12%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
           T + AEL     L   R + EA+     G+ +      F                   + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF------------------EAR 43

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
             ++ + G+        +   +          +     G           + ++L  +DV
Sbjct: 44  GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQH----LSDLLNMSDV 99

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +SLH   + +T +++  + ++ MK  ++L+N SRG V+D  AL + L    +    +DVF
Sbjct: 100 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159

Query: 300 EDEPYMKPG-----LSEMKNAIVVPHIA 322
             EP          L+E  N ++ PHI 
Sbjct: 160 PTEPATNSDPFTSPLAEFDNVLLTPHIG 187

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 68.9 bits (168), Expect = 5e-15
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 18  VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET 77
               +      +     +    +E  T+       E+ +       DG+    T  +   
Sbjct: 5   AYGARVDEIQYFKQWAKDTGNTLEYHTEFLD----ENTVEWAKG-FDGINSLQTTPYAAG 59

Query: 78  LFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
           +F  +   G K  +   VG +N+D+ A  +YGI + N P         +           
Sbjct: 60  VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119

Query: 138 IVEADEFMRAG 148
           + + +      
Sbjct: 120 LTKGETSTEVT 130

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 68.9 bits (168), Expect = 6e-15
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLP-EAAMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P   T+   ++A   +   
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLI 115

Query: 135 ARRIVEAD 142
                 AD
Sbjct: 116 DALFGGAD 123

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 70.6 bits (171), Expect = 7e-15
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 35/216 (16%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
              AE AA  +    R+    DE +             +G  ++ Q VGV+G G IG  +
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVGTGHIGQVF 58

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
            ++M       + Y                                  S+D++ ++ADVI
Sbjct: 59  MQIMEGFGAKVITYDIFRNPE------------------LEKKGYYVDSLDDLYKQADVI 100

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E
Sbjct: 101 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160

Query: 301 DEPYMKPG--------------LSEMKNAIVVPHIA 322
            E  +                 L    N +V P  A
Sbjct: 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTA 196

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 69.9 bits (169), Expect = 1e-14
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 35/217 (16%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
               AE A + +L   R + +    ++AG Y+     +       GQ    +        
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKEL---GQQTVGVMGTGHIGQ 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A  + +GF   +I YD Y                              S++++ +++DV
Sbjct: 59  VAIKLFKGFGAKVIAYDPYPMKGDHP------------------DFDYVSLEDLFKQSDV 100

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           I LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +
Sbjct: 101 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 160

Query: 300 EDEPYMKPG--------------LSEMKNAIVVPHIA 322
           E E                    L  M N ++ PHIA
Sbjct: 161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 18  ALGDQVEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPK--LKIVAR 70

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P   +   A+  A   +A + R+  A EF+   +  G
Sbjct: 71  AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 130

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 66.3 bits (160), Expect = 2e-13
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           +  AE A +L LA  +RI++  E M+ G Y   +        L       +         
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTR 56

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
              ++      +  +                        +   W+  +S++E LREA   
Sbjct: 57  VGKILAALGAQVRGFSRTP--------------------KEGPWRFTNSLEEALREARAA 96

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
                L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F    DV+ 
Sbjct: 97  VCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW 156

Query: 301 DEPYMKPG--LSEMKNAIVVPHIA 322
                        + N +  P +A
Sbjct: 157 GRNDFAKDAEFFSLPNVVATPWVA 180

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 59.9 bits (145), Expect = 8e-12
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
           +    +    VE+      +L+  + +AL     DGV+     D+      AL+  G   
Sbjct: 16  LKEWEDAHKDVEV-EYTDKLLT-PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI 138
            S   VG +N+D+  A + G  + N P     +    A    +  A   
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN 118

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 24  MPGTRWINLLIEQDCRVEICTQKK-------TILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           MP    + LL  +DC VE+   K           S ++I   + ++  G +   T     
Sbjct: 1   MP---LVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTR 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
                      +    +  G++N+D+ +A   GIAV N P     +  + +  +   AAR
Sbjct: 58  EDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVYS-EQASIEMREEAAR 114

Query: 137 RIVEADEFMRAG 148
            I  A       
Sbjct: 115 EIRRAITGRIPD 126

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 21/142 (14%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
             ++ G+   V G G +G   A+ +  GF   +I  ++     L+  +   G        
Sbjct: 19  DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAM--EGY------- 68

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVID 278
                   ++MDE  +E ++             +I       MK +AI+ N       ID
Sbjct: 69  ------EVTTMDEACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEID 118

Query: 279 EVALVEHLKQNPMFRVGLDVFE 300
              L E+  +    +  +D + 
Sbjct: 119 VKWLNENAVEKVNIKPQVDRYR 140

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIV 139
           K      +G ++VD+ +A    + V       + T    A                R I 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIR 174

Query: 140 EADEFMRAGLY 150
           +    ++ G  
Sbjct: 175 DEYLIVQGGAL 185

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV 100
                 K  L  E +   I D    +   L      T     +     A    A+G N V
Sbjct: 27  TNIEFHKGALDDEQLKESIRD-AHFIG--LRSRTHLTEDVINAAEKLVAIGAFAIGTNQV 83

Query: 101 DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 148
           D++AA K GI V N P   T+   E           +  +    + A 
Sbjct: 84  DLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 31/96 (32%)

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K    +  G +++   +     + V    G        +   + + A R          
Sbjct: 51  LKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR---------- 99

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                                +     G      A+
Sbjct: 100 --------------------NLITYATGGRPRNIAK 115

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.7 bits (92), Expect = 8e-05
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L+ +   ++G G +    AR+++E                    +T              
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLE----------------AGARLTVNALTFIPQFTVWA 53

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                + ++    E  + S    +  T    +N+      +   I  N 
Sbjct: 54  NEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           VGV+G G +G+  A  + E GFK  +  ++   + + E+F+ A      A   +      
Sbjct: 4   VGVVGLGVMGANLALNIAEKGFK--VAVFNRTYS-KSEEFMKANASAPFAGNLKAFETME 60

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +    + +    + L      T   +         +K  ILV+       D+    + L
Sbjct: 61  -AFAASLKKPRKALILVQAGAATDSTIEQ--LKKVFEKGDILVDTGNAHFKDQGRRAQQL 117

Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEM 312
           +   +  +G+ +   E   + G +  
Sbjct: 118 EAAGLRFLGMGISGGEEGARKGPAFF 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.92
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.89
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.85
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.85
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.82
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.8
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.78
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.78
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.66
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.43
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.39
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.38
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.34
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.28
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.18
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.91
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.91
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.88
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.83
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.82
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.8
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.68
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.51
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.44
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.43
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.42
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.37
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.33
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.28
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.2
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.13
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.99
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.95
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.94
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.94
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.93
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.92
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.88
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.82
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.79
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.76
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.75
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.75
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.7
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.64
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.49
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.47
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.46
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.43
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.41
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.33
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.29
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.27
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.26
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.23
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.19
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.16
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.12
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.12
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.12
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.06
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.01
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.01
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.01
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.98
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.97
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.94
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.91
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.91
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.91
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.85
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.8
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.79
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.76
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.76
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.75
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.74
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.71
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.63
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.61
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.53
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.49
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.49
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.47
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.46
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.44
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.33
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.33
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.28
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.27
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.26
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.25
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.24
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.23
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.22
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.18
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.13
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.06
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.9
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.88
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.84
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.75
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.66
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.6
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.51
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.49
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.38
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.35
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.34
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.3
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.29
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	95.25
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.18
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	95.18
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.16
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.15
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.1
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.09
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	94.93
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.89
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.87
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.81
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.79
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.61
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.58
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.57
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.57
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.48
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.38
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.27
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.18
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.16
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.03
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.97
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.94
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	93.94
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.83
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.78
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.66
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.66
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.6
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	93.54
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.45
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.41
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.38
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.36
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.36
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.36
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.33
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.32
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.29
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.23
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.14
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.13
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.1
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.09
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.07
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.05
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.92
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.84
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.83
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.62
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.59
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.47
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.44
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.34
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	92.27
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.24
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.24
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	92.18
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.17
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.13
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.12
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.01
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.99
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.98
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.91
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.89
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.83
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.66
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.65
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.65
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.62
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.62
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	91.6
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.58
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	91.54
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	91.44
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	91.42
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.39
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.39
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	91.23
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.15
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.09
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.02
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.96
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.62
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	90.62
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.58
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	90.53
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.39
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.33
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.26
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.21
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.16
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	90.1
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	89.86
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	89.7
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.61
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.54
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.49
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.48
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.43
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.4
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.33
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.27
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.18
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.18
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	88.95
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.89
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.56
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	88.55
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.49
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	88.46
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.31
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	88.2
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	88.11
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	87.45
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	87.4
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	87.4
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	87.37
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	87.12
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	87.03
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.75
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.65
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.63
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.63
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	86.48
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.95
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.93
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	85.92
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.9
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	85.86
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.84
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.8
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.62
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	85.59
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	85.47
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	85.09
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	84.99
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	84.88
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.88
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.49
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	84.38
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.06
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.83
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.6
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	83.46
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	82.74
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	82.16
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	81.58
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	81.56
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	81.4
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	81.35
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	80.75
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.47

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=4.4e-52  Score=376.97  Aligned_cols=190  Identities=33%  Similarity=0.535  Sum_probs=173.4

Q ss_pred             chhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      +.+||||++++||+++|++.++++.+++|.|.+|.+....|++++|+|+||||+|+||+.+|+++ ++|||+|++||++.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHH-Hhhccccccccccc
Confidence            57899999999999999999999999999999998877789999999999999999999999997 89999999999976


Q ss_pred             hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016162          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde  279 (394)
                      .........              ......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++|||
T Consensus        81 ~~~~~~~~~--------------~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1          81 ASSSDEASY--------------QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             CCHHHHHHH--------------TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             cccchhhcc--------------cccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh
Confidence            543221100              112346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCC
Q 016162          280 VALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA  324 (394)
Q Consensus       280 ~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~  324 (394)
                      +||+++|++|++.||++|||++||.+++|||++|||++|||||++
T Consensus       147 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         147 ELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             HHHHHHHHcCCceEEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999999999999999999888899999999999999974

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.2e-52  Score=372.94  Aligned_cols=184  Identities=36%  Similarity=0.525  Sum_probs=167.9

Q ss_pred             CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      |+++||||++++||++.|+++.+++.+++|.|.   +..+.+.++.|+++||+|+|+||+.+|+++ ++|||+|++|||+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~---~~~~~~~~l~~k~vgiiG~G~IG~~va~~~-~~fg~~v~~~d~~   76 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWK---RSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYDPY   76 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCC---GGGCCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCC---ccccccccccceeeeeccccchhHHHHHHh-hhccceEEeecCC
Confidence            678999999999999999999999999999854   444678899999999999999999999996 8999999999998


Q ss_pred             hhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (394)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  278 (394)
                      ..+.....          .+      ....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~~~~~----------~~------~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVd  140 (184)
T d1ygya1          77 VSPARAAQ----------LG------IELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  140 (184)
T ss_dssp             SCHHHHHH----------HT------CEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             CChhHHhh----------cC------ceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhh
Confidence            76532211          01      124689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCC
Q 016162          279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (394)
Q Consensus       279 e~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (394)
                      |+||++||++|++.||+||||++||++++|||++|||++|||||
T Consensus       141 e~aL~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         141 EAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             hHHHHHHHhcCcEeEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999999999999999999999999888999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=6.3e-50  Score=363.21  Aligned_cols=187  Identities=32%  Similarity=0.483  Sum_probs=166.2

Q ss_pred             hhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCC----CCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEc
Q 016162          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWL----PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (394)
Q Consensus       121 ~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~----~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d  196 (394)
                      ++||||++++||+++|++..+++.+++|.|..+.    +....|.+|+||||||||+|+||+.+|+++ ++|||+|++||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l-~~fg~~v~~~d   79 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYD   79 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeee-eccccceeecc
Confidence            4899999999999999999999999999985432    122457899999999999999999999997 89999999999


Q ss_pred             CchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      |+........               .++....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++
T Consensus        80 ~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1          80 PYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             TTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             Ccccccchhh---------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceE
Confidence            9865432211               0122356899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCcceEEeeccCCCCCC--CCccccCCceEEcCCCCC
Q 016162          277 IDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  323 (394)
Q Consensus       277 vde~aL~~aL~~g~l~gaalDV~~~EP~~--~~~L~~~~nvilTPHia~  323 (394)
                      |||+||+++|++|++.||++|||++||++  ++||+++|||++|||+|+
T Consensus       145 vde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         145 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999999999999999999976  468999999999999985

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=6.9e-49  Score=355.25  Aligned_cols=187  Identities=26%  Similarity=0.322  Sum_probs=165.5

Q ss_pred             hhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       121 ~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+||||+++++|+++|++.++++.+++|.|..+ +....+++++|+++||+|+|+||+.+|+++ ++|||+|.+||+...
T Consensus         1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~-~~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~   78 (188)
T d2naca1           1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIA-DCVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRL   78 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHH-HHHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCc-ccCCcceeccccceeeccccccchhhhhhh-hccCceEEEEeeccc
Confidence            489999999999999999999999999997532 222346899999999999999999999997 899999999998764


Q ss_pred             hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 016162          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (394)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~  280 (394)
                      ......  .+            ......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++
T Consensus        79 ~~~~~~--~~------------~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~  144 (188)
T d2naca1          79 PESVEK--EL------------NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRD  144 (188)
T ss_dssp             CHHHHH--HH------------TCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred             cccccc--cc------------cccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHH
Confidence            422211  00            1224578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCcceEEeeccCCCCCCC-CccccCCceEEcCCCCC
Q 016162          281 ALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIAS  323 (394)
Q Consensus       281 aL~~aL~~g~l~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~  323 (394)
                      ||+++|++|++.||+||||++||++. +||+++||+++|||+||
T Consensus       145 aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         145 AVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            99999999999999999999999875 68999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=9.5e-49  Score=356.40  Aligned_cols=182  Identities=35%  Similarity=0.575  Sum_probs=163.7

Q ss_pred             hhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       121 ~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ++||||+++++|+++|++..+++.+++|.|. |.+  ..|++|+|+||||||+|+||+.+|+++ ++|||+|++||++..
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l-~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRN   77 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhH-hhhcccccccCcccc
Confidence            6899999999999999999999999999885 654  468999999999999999999999997 899999999999875


Q ss_pred             hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 016162          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (394)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~  280 (394)
                      .....           .+      ....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++
T Consensus        78 ~~~~~-----------~~------~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~  140 (197)
T d1j4aa1          78 PELEK-----------KG------YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD  140 (197)
T ss_dssp             HHHHH-----------TT------CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             ccccc-----------ce------eeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhH
Confidence            43221           01      13468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCcceEEeeccCCCCCCC--------------CccccCCceEEcCCCCC
Q 016162          281 ALVEHLKQNPMFRVGLDVFEDEPYMK--------------PGLSEMKNAIVVPHIAS  323 (394)
Q Consensus       281 aL~~aL~~g~l~gaalDV~~~EP~~~--------------~~L~~~~nvilTPHia~  323 (394)
                      ||+++|++|++.||++|||+.||...              +||+.+|||++|||+|+
T Consensus       141 aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         141 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99999999999999999999997421              25899999999999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=3e-49  Score=360.61  Aligned_cols=184  Identities=32%  Similarity=0.469  Sum_probs=164.1

Q ss_pred             chhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .++||||++++||++.|++..+++.+++|.|..+  ..+.|++|.||||||||+|+||+.+|+++ ++|||+|++|||+.
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~--~~~~~~~l~~ktvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   78 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA--GTFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYP   78 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHH--TCCCCCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcc--cCcccccccceeeeeeecccccccccccc-cccceeeeccCCcc
Confidence            4689999999999999999999999999997532  23468899999999999999999999997 89999999999976


Q ss_pred             hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016162          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde  279 (394)
                      ....               ..   .....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||+
T Consensus        79 ~~~~---------------~~---~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          79 MKGD---------------HP---DFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             CSSC---------------CT---TCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             chhh---------------hc---chhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhh
Confidence            4311               00   11346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeccCCCCCC----------C----CccccCCceEEcCCCCCC
Q 016162          280 VALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVPHIASA  324 (394)
Q Consensus       280 ~aL~~aL~~g~l~gaalDV~~~EP~~----------~----~~L~~~~nvilTPHia~~  324 (394)
                      +||+++|++|++.||+||||++||++          +    ++|+++|||++|||+||+
T Consensus       141 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         141 QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99999999999999999999999952          1    368899999999999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-48  Score=351.03  Aligned_cols=183  Identities=28%  Similarity=0.435  Sum_probs=156.9

Q ss_pred             CchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      |+++||||+++++|++.|+++.++..+++|.|.   +....+.++.|++|||||+|+||+.+|+++ ++|||+|++||++
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~---~~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~   76 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGN---KLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIE   76 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCc---ccccccccccceEEEEeecccchhhhhhhc-ccccceEeecccc
Confidence            689999999999999999999999999999864   334467899999999999999999999997 8999999999987


Q ss_pred             hhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (394)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  278 (394)
                      .....                  .......+++|++++||+|++|+|+|++|+++||++.|+.||++++|||+|||++||
T Consensus        77 ~~~~~------------------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1          77 NKLPL------------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             CCCCC------------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred             ccchh------------------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhh
Confidence            54310                  012235689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcceEEeeccCCCCCC-----CCccccCCceEEcCCCCC
Q 016162          279 EVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIAS  323 (394)
Q Consensus       279 e~aL~~aL~~g~l~gaalDV~~~EP~~-----~~~L~~~~nvilTPHia~  323 (394)
                      ++||+++|++|++.+|+||||++||..     .+||+++|||++|||+||
T Consensus       139 e~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         139 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             hHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999999999999999999999999973     247999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=3.1e-47  Score=342.16  Aligned_cols=179  Identities=27%  Similarity=0.460  Sum_probs=159.9

Q ss_pred             chhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      +++||||+++++|+++|++..+++.+++|.|..   .. ...+++||||||||+|+||+.+|+++ ++|||+|++|||++
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~---~~-~~~~l~gk~vgIiG~G~IG~~va~~l-~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR---DV-EIPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---CS-CCCCCTTCEEEEESCSTHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC---CC-CCCcccCceEEEeccccccccceeee-eccccccccccccc
Confidence            478999999999999999999999999998743   21 22479999999999999999999997 89999999999986


Q ss_pred             hhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016162          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde  279 (394)
                      ...                .    .....++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||+
T Consensus        76 ~~~----------------~----~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~  135 (181)
T d1qp8a1          76 KEG----------------P----WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR  135 (181)
T ss_dssp             CCS----------------S----SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH
T ss_pred             ccc----------------c----eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccc
Confidence            421                0    11246899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeccCCCC-CC-CCccccCCceEEcCCCCC
Q 016162          280 VALVEHLKQNPMFRVGLDVFEDEP-YM-KPGLSEMKNAIVVPHIAS  323 (394)
Q Consensus       280 ~aL~~aL~~g~l~gaalDV~~~EP-~~-~~~L~~~~nvilTPHia~  323 (394)
                      +||+++|++|++.+|++|||+.|| ++ ++||+.+|||++|||+||
T Consensus       136 ~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         136 DGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            999999999999999999998765 33 358999999999999997

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=3.8e-26  Score=193.39  Aligned_cols=128  Identities=22%  Similarity=0.283  Sum_probs=113.2

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      +|+|||++++++++ .++.|++. +++.+...    .+++|+.+.+++ +|+++++..+++++++++++|+|  |+|++.
T Consensus         1 sMpkvli~~~~~~~-~~~~L~~~-~~v~~~~~----~~~~el~~~~~~-~d~ii~~~~~~i~~~~l~~~p~L--k~I~~~   71 (130)
T d1ygya2           1 SLPVVLIADKLAPS-TVAALGDQ-VEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVARA   71 (130)
T ss_dssp             CCCEEEECSSCCGG-GGTTSCSS-SEEEECCT----TSHHHHHHHGGG-CSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCCEEEEECCCCHH-HHHHHhCC-cEEEECCC----CCHHHHHHHcCC-CEEEEEcCcccchHHHHhhcccc--eEEeee
Confidence            47899999999885 46777554 57765432    478999999984 99999988889999999999998  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCcc
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~  150 (394)
                      |+||||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++++|+|.|
T Consensus        72 g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          72 GVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             cccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            999999999999999999999999999999999999999999999988888888775

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3e-23  Score=175.72  Aligned_cols=123  Identities=22%  Similarity=0.159  Sum_probs=103.0

Q ss_pred             CCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEE
Q 016162           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (394)
Q Consensus        12 ~~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~   91 (394)
                      ++.|||||+++++++. .++.|++.|+......  ....+++++.+.+.+ +|++++++.+++++++++++|+|  |+|+
T Consensus         1 ek~kmKILv~d~i~~~-a~~~L~~~g~~~v~~~--~~~~~~~~l~~~~~~-~d~ii~~~~~~i~~~~i~~~p~L--k~I~   74 (132)
T d1sc6a2           1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFH--KGALDDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKL--VAIG   74 (132)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEEC--SSCCCHHHHHHHTTS-CSEEEECSSCCBCHHHHHHCSSC--CEEE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHHhCCCEEEEeC--CCCCCHHHHHHhhcC-CcEEEEecccccChhhhhccccc--eeEE
Confidence            3578999999999885 5889999887543222  234689999999985 99999988889999999999998  9999


Q ss_pred             EcccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHH
Q 016162           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD  142 (394)
Q Consensus        92 ~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~  142 (394)
                      ++|+||||||+++|+++||.|+|+|++++.+|||+++.||+  .|+...++
T Consensus        75 ~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d  123 (132)
T d1sc6a2          75 AFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSD  123 (132)
T ss_dssp             ECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHH
T ss_pred             EecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHh
Confidence            99999999999999999999999999999999998765554  44444433

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.85  E-value=4.9e-22  Score=167.98  Aligned_cols=121  Identities=16%  Similarity=0.231  Sum_probs=97.6

Q ss_pred             eEEEEeCCCCc-hHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEc
Q 016162           16 YRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (394)
Q Consensus        16 ~~vlv~~~~~~-~~~~~~l-~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~   93 (394)
                      |||++....+. .+.++.+ .+.++++......    ..++..+.+. ++|+|+++..+++++++++++|..++|+|++.
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~   75 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCC----CCHHHHHHhc-CCCEEEEecCCCCCHHHHhhcccCCeEEEEEc
Confidence            67888654332 2344444 4467777654332    2356666776 59999998888999999999987667999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHH
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~  141 (394)
                      |+|+||||+++|+++||+|+|+|++++++||||++++||++.|++..+
T Consensus        76 ~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          76 NVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHH
Confidence            999999999999999999999999999999999999999999988654

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.85  E-value=5e-21  Score=161.32  Aligned_cols=116  Identities=20%  Similarity=0.350  Sum_probs=98.0

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhc-ccCCcEEEEc
Q 016162           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALS-RAGGKAFSNM   93 (394)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~-~l~~k~I~~~   93 (394)
                      |+|||++.+++++ .++.+++ .+++.... .....+.+|+.+.+++ +|+++++..+++++++++++| +|  |+|+++
T Consensus         1 K~kVlit~~~~~~-~~~~l~~-~~~v~~~~-~~~~~s~~el~~~~~~-~d~ii~~~~~~i~~~~l~~~~~~L--K~I~~~   74 (129)
T d1gdha2           1 KKKILITWPLPEA-AMARARE-SYDVIAHG-DDPKITIDEMIETAKS-VDALLITLNEKCRKEVIDRIPENI--KCISTY   74 (129)
T ss_dssp             CCEEEESSCCCHH-HHHHHHT-TSEEEECC-STTCCCHHHHHHHHTT-CSEEEEETTSCBCHHHHHHSCTTC--CEEEEE
T ss_pred             CCEEEEeCCCCHH-HHHHHHc-CCcEEEeC-CCCCCCHHHHHHHhcC-CCEEEEcCCchhhhHHHhhhhhcc--eeeeec
Confidence            6799999999874 5788876 45765433 3345789999999984 999999888899999999997 56  999999


Q ss_pred             ccCccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHh
Q 016162           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR  136 (394)
Q Consensus        94 g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R  136 (394)
                      |+|+||||+++|+++||+|+|+||+++.+|||+++++|+.+.+
T Consensus        75 gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          75 SIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999976665555444

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.82  E-value=2.5e-22  Score=167.49  Aligned_cols=121  Identities=11%  Similarity=0.111  Sum_probs=100.2

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      |||+|+.++|++ ..+.|++. +++.  ...+           +. ++|+++++   +++++.++++|+|  |+|++.|+
T Consensus         1 Mki~v~~~lp~e-~~e~L~~~-~~v~--~~~d-----------~~-~~d~~l~~---~~~~~~l~~~~~L--k~i~~~~a   59 (121)
T d1qp8a2           1 MELYVNFELPPE-AEEELRKY-FKIV--RGGD-----------LG-NVEAALVS---RITAEELAKMPRL--KFIQVVTA   59 (121)
T ss_dssp             CEEECCSCCCHH-HHHHHHTT-CEEE--CSSC-----------CT-TBCCCCBS---CCCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEeCCCCHH-HHHHhhhc-ceEe--eccc-----------cc-ccceeeee---ccCHHHHhcCCCc--eEEEeccc
Confidence            689999999974 56777654 3442  2111           12 47776654   6889999999998  99999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (394)
                      |+||+|++.+. +||.|+|++|+|+.+||||++++||++.|                              +++|+|+|+
T Consensus        60 G~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r------------------------------~l~i~G~G~  108 (121)
T d1qp8a2          60 GLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVR------------------------------NLITYATGG  108 (121)
T ss_dssp             CCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHH------------------------------HHHHHHTTS
T ss_pred             CcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcC------------------------------CEEEEcCCH
Confidence            99999999885 69999999999999999999999999987                              357999999


Q ss_pred             HHHHHHHHHHhcCC
Q 016162          176 IGSAYARMMVEGFK  189 (394)
Q Consensus       176 IG~~vA~~la~~~G  189 (394)
                      ||+++|+|+ ++||
T Consensus       109 iG~~iA~r~-~a~G  121 (121)
T d1qp8a2         109 RPRNIAKRE-DYIG  121 (121)
T ss_dssp             CCSCBCCGG-GTC-
T ss_pred             HHHHHHHHH-HhcC
Confidence            999999995 8987

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.80  E-value=1.5e-20  Score=165.35  Aligned_cols=117  Identities=16%  Similarity=0.096  Sum_probs=102.2

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhcccCCcEEEEcccCccccchhHHh
Q 016162           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (394)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~--~~~i~~~~l~~l~~l~~k~I~~~g~G~d~id~~~a~  106 (394)
                      +.+.|++.|+++.+..+.+  .+.+++.+.+.+ +|++|++.  ...+++++++++|+|  |+|+++|+|+||||+++|+
T Consensus        59 lr~~Le~~GhelV~~sd~~--~~~~el~k~l~D-ADivI~~pf~~~~lt~e~i~~ap~L--KlI~~~g~G~D~VDl~aa~  133 (186)
T d2naca2          59 LRKYLESNGHTLVVTSDKD--GPDSVFERELVD-ADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (186)
T ss_dssp             CHHHHHHTTCEEEEESCCS--STTSHHHHHHTT-CSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEecCCC--CChHHHHhhccc-CCEEEEecccccccCHHHHhcCccc--eEEEEeccCCccccHHHHH
Confidence            3577889999987766544  355688888885 99999974  578999999999998  9999999999999999999


Q ss_pred             hCCceEecCCCCCchhhHHHH--------HHHHHHHHhchHHHHHHHHcCcc
Q 016162          107 KYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIVEADEFMRAGLY  150 (394)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~~--------l~~~L~~~R~~~~~~~~~~~g~~  150 (394)
                      ++||.|+|+||+|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       134 e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         134 DRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             hCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999999999        77888889999887777778875

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.78  E-value=2.3e-19  Score=151.93  Aligned_cols=125  Identities=20%  Similarity=0.210  Sum_probs=96.6

Q ss_pred             EEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           17 RVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        17 ~vlv~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      ||++-..... ...++.+.+..+++++...+. ..+ +|+.+.+. ++|+|+++..++++++++++++++++|+|++.|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~-~~~-~e~~~~~~-~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK-LLT-PETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSS-CCC-TTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCC-CCC-HHHHHHhc-CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence            6777543332 235666655555555544333 233 56677776 5999999888899999999998777799999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCcc
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~  150 (394)
                      ||||||+++|+++||.|+|+|++   ++|||++++||+++|++.   ..+.+|+|
T Consensus        79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~---~~~~~~k~  127 (134)
T d1j4aa2          79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN---LELVEGKE  127 (134)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHH---HHHHTTCC
T ss_pred             CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHh---HHHhhhhc
Confidence            99999999999999999999987   589999999999999764   45556654

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.78  E-value=1.3e-19  Score=152.99  Aligned_cols=123  Identities=20%  Similarity=0.243  Sum_probs=95.0

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhcccCCcEEEEccc
Q 016162           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (394)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~~~d~ii~~~~~~i~~~~l~~l~~l~~k~I~~~g~   95 (394)
                      ++|++.+.......+..|++.+ ++.++..    .+.+|+.+.+.+++++++++..+++++++++++|+|  |+|++.|+
T Consensus         2 P~v~~ld~~d~~~e~~~L~~~~-~v~~~~~----~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~L--k~I~~~g~   74 (133)
T d1mx3a2           2 PLVALLDGRDCTVEMPILKDVA-TVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIVRIGS   74 (133)
T ss_dssp             CEEEESSCSCCTTTHHHHTTTC-EEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEEESSS
T ss_pred             CEEEEecCCcchhhHHHhcccc-eEEEecC----CChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCC--eEEEEcCC
Confidence            4666665443222356776643 5554332    244555544323478888888889999999999998  99999999


Q ss_pred             CccccchhHHhhCCceEecCCCCCchhhHHHHHHHHHHHHhchHHHHHHHHcCcc
Q 016162           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (394)
Q Consensus        96 G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~~  150 (394)
                      |+||||+++|+++||.|+|+|++++ ++|||+++++|+++|+++++.    +|+|
T Consensus        75 G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~----~g~~  124 (133)
T d1mx3a2          75 GFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI----TGRI  124 (133)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH----HSCT
T ss_pred             CcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH----hccc
Confidence            9999999999999999999999987 579999999999999998764    4565

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.1e-17  Score=139.20  Aligned_cols=122  Identities=21%  Similarity=0.343  Sum_probs=99.0

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+..|.||+++|+|||.||+.+|+++ ++|||+|++||+++-..+++..+.|               ...++++++..+|
T Consensus        18 t~~~l~Gk~v~V~GyG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG~---------------~v~~~~~a~~~ad   81 (163)
T d1li4a1          18 TDVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEGY---------------EVTTMDEACQEGN   81 (163)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTC---------------EECCHHHHTTTCS
T ss_pred             hCceecCCEEEEeccccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCce---------------Eeeehhhhhhhcc
Confidence            34679999999999999999999997 8999999999999987777654432               3468999999999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a-RG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      +|+.++    .++++|+.+.|+.||+|+++.|++ +..-||.++|.+...+.+.....+|.|.
T Consensus        82 ivvtaT----Gn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          82 IFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             EEEECS----SCSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEEecC----CCccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            998875    468899999999999999999997 5667999998875444433444455443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.43  E-value=2.9e-13  Score=116.39  Aligned_cols=103  Identities=20%  Similarity=0.321  Sum_probs=88.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+.||++.|+|||.+|+.+|+++ +++|++|++++..|-..+++.++.|               ...+++|+++.+|++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~mdGf---------------~v~~~~~a~~~aDi~   82 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEGF---------------NVVTLDEIVDKGDFF   82 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTTC---------------EECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEecccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhcCC---------------ccCchhHccccCcEE
Confidence            468999999999999999999997 8999999999999988777654433               346899999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-vde~aL~  283 (394)
                      +.++.    ..++|+.+.|..||+|+++.|+++... ||-++|.
T Consensus        83 vTaTG----n~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          83 ITCTG----NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             EECCS----SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             EEcCC----CCccccHHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            99976    356899999999999999999998764 5655554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.39  E-value=3.6e-13  Score=116.32  Aligned_cols=112  Identities=18%  Similarity=0.196  Sum_probs=91.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      .+|||||+|.||+.+|++| ...|.+|++||+++.... .+.        ..+     .....++.|++++||+|++|+|
T Consensus         1 MkIgiIGlG~MG~~~A~~L-~~~G~~V~~~d~~~~~~~-~~~--------~~~-----~~~~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAIA-DVI--------AAG-----AETASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH-HHH--------HTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEehhHHHHHHHHHH-HHCCCeEEEEeCCcchhH-HHH--------Hhh-----hhhcccHHHHHhCCCeEEEEcC
Confidence            4799999999999999998 578999999999986532 211        112     2235789999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ..++...++.  ...+..+++|.++||+++..+-....+.+.+.+..+.
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~  114 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  114 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             CHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8888887662  3578889999999999999998889999999886543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.38  E-value=3.5e-12  Score=110.08  Aligned_cols=148  Identities=14%  Similarity=0.055  Sum_probs=95.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|+||+++|+.| +..|.+|++|||+.+.....         ...+...   .. .+..+.+++||+|++++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~~~a---------~~~~~~~---~~-~~~~~~~~~~DiIilavp   66 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEKA---------VERQLVD---EA-GQDLSLLQTAKIIFLCTP   66 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTTSCS---EE-ESCGGGGTTCSEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHHHHH---------HHhhccc---ee-eeecccccccccccccCc
Confidence            4799999999999999998 68899999999987543221         1112211   11 233467899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC-CC-CCCccccCCceEEcCCCCC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PY-MKPGLSEMKNAIVVPHIAS  323 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~E-P~-~~~~L~~~~nvilTPHia~  323 (394)
                      . ..+..++ .+....+++++++++++......... ...+...-+..-.+...+.. |. ..+.|+....+++||+-++
T Consensus        67 ~-~~~~~vl-~~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~  143 (165)
T d2f1ka2          67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (165)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             H-hhhhhhh-hhhhhhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCC
Confidence            3 4566666 56778899999999998765433333 33333332322233222222 11 1245888888999998654


Q ss_pred             CcHHHHHH
Q 016162          324 ASKWTREG  331 (394)
Q Consensus       324 ~t~~~~~~  331 (394)
                       +.++.+.
T Consensus       144 -~~~~~~~  150 (165)
T d2f1ka2         144 -DPEQLAC  150 (165)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             4444443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.34  E-value=5.9e-12  Score=108.95  Aligned_cols=150  Identities=17%  Similarity=0.109  Sum_probs=100.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH-hcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l  242 (394)
                      |+|+|||+|.||.++|+.| +..|  .+|++||++.......         ...+...   ....+.++. ...+|+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L-~~~g~~~~I~~~D~~~~~~~~a---------~~~~~~~---~~~~~~~~~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKA---------VDLGIID---EGTTSIAKVEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHH---------HHTTSCS---EEESCGGGGGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHH-HhcCCCeEEEEEECChHHHHHH---------HHhhcch---hhhhhhhhhhccccccccc
Confidence            5799999999999999998 4444  5899999987653221         1122211   112343333 357999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC-CC-CCCccccCCceEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PY-MKPGLSEMKNAIVVPH  320 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~E-P~-~~~~L~~~~nvilTPH  320 (394)
                      |+|. .++..++ ++....+++++++++++.....-.+++.+.+...-+.+--+...+.. |. ..+.|++..++++|||
T Consensus        69 a~p~-~~~~~vl-~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~  146 (171)
T d2g5ca2          69 SSPV-RTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPT  146 (171)
T ss_dssp             CSCH-HHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCC
T ss_pred             cCCc-hhhhhhh-hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecC
Confidence            9992 3344555 55667799999999999866655666666676654555555544432 21 2346899999999999


Q ss_pred             CCCCcHHHHHH
Q 016162          321 IASASKWTREG  331 (394)
Q Consensus       321 ia~~t~~~~~~  331 (394)
                      -. .+.++.+.
T Consensus       147 ~~-~~~~~~~~  156 (171)
T d2g5ca2         147 KK-TDKKRLKL  156 (171)
T ss_dssp             SS-SCHHHHHH
T ss_pred             CC-CCHHHHHH
Confidence            55 44555443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.28  E-value=4.1e-12  Score=109.73  Aligned_cols=116  Identities=20%  Similarity=0.222  Sum_probs=92.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      ++|||||+|.||..+|++| ..-|.+|.+||++...... .        ...+     .....++.|.+..+|+|++|+|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L-~~~g~~v~~~d~~~~~~~~-~--------~~~~-----~~~~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAVDG-L--------VAAG-----ASAARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHHHH-H--------HHTT-----CEECSSHHHHHTSCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHH-HHCCCeEEEEECchhhhhh-h--------hhhh-----ccccchhhhhccccCeeeeccc
Confidence            5899999999999999998 5679999999999765322 1        1112     1234689999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeec
Q 016162          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (394)
Q Consensus       246 lt~~t~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV  298 (394)
                      ..+..+.++.  ...+..+++|.++||++...+-+...+.+.+++..+  ..+|.
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi--~~~da  119 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLDA  119 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEEC
T ss_pred             chhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCC--cEEec
Confidence            8877776653  446788999999999999999999999999988654  44454

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.18  E-value=4.1e-11  Score=104.62  Aligned_cols=123  Identities=12%  Similarity=0.161  Sum_probs=91.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      -++|||||+|+||..||++| ..-|.+|++|||++++.. ++.+...     ......+.....++.+.+..+|.+++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKVD-DFLANEA-----KGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHHH-HHHHTTT-----TTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CCcEEEEeEhHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HHHHhcc-----ccccccchhhhhhhhhhhcccceEEEec
Confidence            36899999999999999998 567999999999986532 2211110     0011111222345667788899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalD  297 (394)
                      |..+.+...+ .+.+..+++|.++||+++..+-+...+.+.+.+..+  ..+|
T Consensus        75 ~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~--~~ld  124 (176)
T d2pgda2          75 KAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI--LFVG  124 (176)
T ss_dssp             CTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEE
T ss_pred             CchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCC--ceec
Confidence            9888877765 578889999999999999999999999999887654  3445

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=1.3e-09  Score=92.89  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=80.2

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl  246 (394)
                      +|||||+|+||..||++|. ..|..+ +|+++.++.... .++.       +.       ..+..+.+.++|++++++|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~-~~g~~~-~~~~~~~~~~~~-~~~~-------~~-------~~~~~~~~~~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLA-RRFPTL-VWNRTFEKALRH-QEEF-------GS-------EAVPLERVAEARVIFTCLPT   64 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHH-TTSCEE-EECSSTHHHHHH-HHHH-------CC-------EECCGGGGGGCSEEEECCSS
T ss_pred             eEEEEeHHHHHHHHHHHHH-hCCCEE-EEeCCHHHHHHH-HHHc-------CC-------cccccccccceeEEEecccc
Confidence            6999999999999999984 556655 566665543221 1111       11       12334667789999999997


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       247 t~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      ..+.... ....+..++++.++||+++..+-....+.+.+++..+.
T Consensus        65 ~~~v~~~-~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~  109 (156)
T d2cvza2          65 TREVYEV-AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT  109 (156)
T ss_dssp             HHHHHHH-HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hhhhhhh-hccccccccccccccccccCCHHHHHHHHHHHHHcCCe
Confidence            7666554 35788999999999999999999999999999976543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.91  E-value=1.2e-09  Score=92.63  Aligned_cols=105  Identities=10%  Similarity=0.048  Sum_probs=75.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      .+|||||+|+||+.+|+.| ..-|.+|++||+..........+..       +       ...+++|++.+||+|++|+|
T Consensus         1 MkIgiIG~G~mG~~ia~~l-~~~g~~v~~~~~~~~~~~~~~~~~~-------~-------~~~~~~e~~~~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPSTIERARTV-------G-------VTETSEEDVYSCPVVISAVT   65 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHHHHHHHHH-------T-------CEECCHHHHHTSSEEEECSC
T ss_pred             CEEEEEcHHHHHHHHHHHH-HHCCCeEEEEcCchhHHHHHhhhcc-------c-------ccccHHHHHhhcCeEEEEec
Confidence            4799999999999999998 5679999999987765433221111       1       13478899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      .... ...+ .....  ..+.++|+++.........+.+.+++.
T Consensus        66 ~~~~-~~~~-~~~~~--~~~~~~id~st~~p~~~~~l~~~~~~~  105 (152)
T d1i36a2          66 PGVA-LGAA-RRAGR--HVRGIYVDINNISPETVRMASSLIEKG  105 (152)
T ss_dssp             GGGH-HHHH-HHHHT--TCCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred             CchH-HHHH-Hhhcc--cCCceeeccCcCCHHHHHHHHHHHhcc
Confidence            5433 3332 22222  236789999998887778888877654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.88  E-value=2e-09  Score=91.08  Aligned_cols=85  Identities=14%  Similarity=0.200  Sum_probs=68.2

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ...-++|+||| +|+||+++|++| +..|.+|.+||+....                           +.++.+..+|++
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~---------------------------~~~~~~~~~~~v   57 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA---------------------------VAESILANADVV   57 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG---------------------------GHHHHHTTCSEE
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHH-HHcCCCcEeccccccc---------------------------ccchhhhhcccc
Confidence            34567999999 999999999998 6889999999987542                           345668899999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      ++++|.. .+. .+-.+.+..++++++++|++.-..
T Consensus        58 ~~~~~~~-~~~-~v~~~~~~~~~~~~iiiD~~Svk~   91 (152)
T d2pv7a2          58 IVSVPIN-LTL-ETIERLKPYLTENMLLADLTSVKR   91 (152)
T ss_dssp             EECSCGG-GHH-HHHHHHGGGCCTTSEEEECCSCCH
T ss_pred             ccccchh-hhe-eeeecccccccCCceEEEecccCH
Confidence            9999932 333 344678889999999999987543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.83  E-value=2.1e-08  Score=85.09  Aligned_cols=101  Identities=17%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      .+|||||+|+||+++++.| ...|.+|++|+|+.++. ++..+.|       +     .....+.++++..||+|++|++
T Consensus         1 MkIg~IG~G~mG~al~~~l-~~~~~~i~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~~~~~~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------A-----LPYAMSHQDLIDQVDLVILGIK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------T-----CCBCSSHHHHHHTCSEEEECSC
T ss_pred             CEEEEEeccHHHHHHHHHH-HhCCCeEEEEcChHHhH-Hhhcccc-------c-----eeeechhhhhhhccceeeeecc
Confidence            4799999999999999998 56789999999987653 2222222       2     1234689999999999999997


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       246 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                        |+..    ++.++.++++..+|+++-|  +..+.|-+.+..
T Consensus        67 --p~~~----~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~  101 (152)
T d2ahra2          67 --PQLF----ETVLKPLHFKQPIISMAAG--ISLQRLATFVGQ  101 (152)
T ss_dssp             --GGGH----HHHHTTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred             --hHhH----HHHhhhcccceeEeccccc--ccHHHHHhhhcc
Confidence              4322    5667889999999999876  455667766644

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.82  E-value=7e-09  Score=89.92  Aligned_cols=127  Identities=17%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHH---HHhcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~~aDiV~l  242 (394)
                      ++|||||+|+||..+|++| ...|.+|++|||++++..+ +.+.++..     ..........+.+   ..+..++.+.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L-~~~G~~V~~~dr~~~~~~~-l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNI-AEKGFKVAVFNRTYSKSEE-FMKANASA-----PFAGNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHHHH-HHHHTTTS-----TTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHH-HHCCCeEEEEECCHHHHHH-HHHcCCcc-----ccccchhhhhhhhHHHHhcccceEEEE
Confidence            4799999999999999998 5779999999999876432 22221100     0000111123333   44578899999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      +++........+ ......++++.++||+++...-+...+.+.|.+..+...-.-|+.
T Consensus        75 ~~~~~~~~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             eecCcchhhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            998776666655 466777899999999999999999999999987765554433444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.80  E-value=9.1e-09  Score=88.54  Aligned_cols=102  Identities=18%  Similarity=0.347  Sum_probs=76.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+...++.|||.|..|..-++. ++++|++|.++|.+... +++....|....+      ........+++.+++||+|+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~-A~~lGA~V~~~D~~~~~-l~~l~~~~~~~~~------~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKM-AVGLGAQVQIFDINVER-LSYLETLFGSRVE------LLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESCHHH-HHHHHHHHGGGSE------EEECCHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEECCChHHHHHHHH-HhhCCCEEEEEeCcHHH-HHHHHHhhcccce------eehhhhhhHHHhhccCcEEE
Confidence            3577899999999999999998 48999999999998764 3333333322111      11111235788999999997


Q ss_pred             Ec--CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          242 LH--PVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       242 l~--lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .+  +| ...+..+|.++.++.||||+++||++
T Consensus       101 ~aalip-G~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         101 GAVLVP-GRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             ECCCCT-TSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             EeeecC-CcccCeeecHHHHhhcCCCcEEEEee
Confidence            65  44 45568899999999999999999996

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.68  E-value=6.2e-08  Score=83.34  Aligned_cols=120  Identities=15%  Similarity=0.194  Sum_probs=77.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhh-hcCCCC--ccccccCCHHHHhcccCEEE
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQP--VTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~ell~~aDiV~  241 (394)
                      .||++|||.|.||..+|..| ...|.+|++|||++... +...+. +.... ..+...  .......++.|.++++|+|+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l-~~~G~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDR-GAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHH-TSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECccHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHc-CCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            47999999999999999998 57899999999987542 221110 00000 000000  01112357899999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (394)
                      +++| +..+..++ ++.-..++++++++-. -|....+..+.+.+....
T Consensus        78 i~v~-~~~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          78 IVVP-AIHHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRENG  123 (184)
T ss_dssp             ECSC-GGGHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTT
T ss_pred             EEEc-hhHHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHhc
Confidence            9999 34445544 4556788999988754 444445556666666554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.51  E-value=1.3e-07  Score=82.28  Aligned_cols=108  Identities=20%  Similarity=0.247  Sum_probs=72.5

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhh----------cCC----CCccc--c
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA----------NGE----QPVTW--K  225 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~----------~~~----~~~~~--~  225 (394)
                      .+..-+|.|||.|..|..-++. |+++|+.|.++|.+.... ++..+.++.++.-          .+.    ....+  .
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~-A~~lGA~V~v~D~~~~~~-~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIAT-AKRLGAVVMATDVRAATK-EQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHH-HHHTTCEEEEECSCSTTH-HHHHHTTCEECCC-----------------------CC
T ss_pred             CcCCcEEEEEcCcHHHHHHHHH-HHHcCCEEEEEeccHHHH-HHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            3566799999999999999998 589999999999887542 2222222211100          000    00000  0


Q ss_pred             ccCCHHHHhcccCEEEEc--CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          226 RASSMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       226 ~~~~l~ell~~aDiV~l~--lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ....+.+.+++||+|+.+  +|. ..+..+|.++.++.||||+++||++
T Consensus       104 ~~~~l~~~l~~aDlVI~talipG-~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         104 QAEAVLKELVKTDIAITTALIPG-KPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTT-SCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHHHhhhhheeeeecCC-cccceeehHHHHHhcCCCcEEEEEe
Confidence            011255668899999754  563 3467889999999999999999996

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.44  E-value=6.5e-07  Score=76.28  Aligned_cols=99  Identities=15%  Similarity=0.236  Sum_probs=70.7

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+.++++.|||.|.||+.+++.| ...|. ++++++|+..+.. +....+       +   ..+..+.++.+.+.++|+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L-~~~g~~~i~v~nRt~~ka~-~l~~~~-------~---~~~~~~~~~~~~l~~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERAV-ELARDL-------G---GEAVRFDELVDHLARSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHHH-HHHHHH-------T---CEECCGGGHHHHHHTCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHH-HhcCCcEEEEEcCcHHHHH-HHHHhh-------h---cccccchhHHHHhccCCEE
Confidence            58999999999999999999998 57787 7999999875532 222222       1   1223456888899999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcC------CCCcEEEEcCCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATM------KKEAILVNCSRGP  275 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~m------k~gailIN~aRG~  275 (394)
                      +.|++   ....+|+.+.++..      ++..++||.|...
T Consensus        89 i~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr  126 (159)
T d1gpja2          89 VSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANPR  126 (159)
T ss_dssp             EECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred             EEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence            99986   44667777766422      2344777776443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.43  E-value=1.3e-07  Score=75.97  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHhcccC
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREAD  238 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aD  238 (394)
                      .-+++||+++|||.|.+|.+-|+.| ..+|++|+++++...+......+        .+  ...+.. ..+ ++.+..+|
T Consensus         7 ~l~l~~k~vlVvG~G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~--------~~--~i~~~~~~~~-~~dl~~~~   74 (113)
T d1pjqa1           7 FCQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWAN--------EG--MLTLVEGPFD-ETLLDSCW   74 (113)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHT--------TT--SCEEEESSCC-GGGGTTCS
T ss_pred             EEEeCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHh--------cC--CceeeccCCC-HHHhCCCc
Confidence            3589999999999999999999998 79999999999988765443221        11  111211 112 34477889


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|+.+.. ++    -+|......+|+..++||++
T Consensus        75 lv~~at~-d~----~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          75 LAIAATD-DD----TVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EEEECCS-CH----HHHHHHHHHHHHTTCEEEET
T ss_pred             EEeecCC-CH----HHHHHHHHHHHHcCCEEEeC
Confidence            9988865 22    35677777888888999975

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=5e-08  Score=82.11  Aligned_cols=88  Identities=14%  Similarity=0.189  Sum_probs=57.0

Q ss_pred             EEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCC
Q 016162          168 VGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (394)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPl  246 (394)
                      |||||+|+||+.+++.| +. +.+ +.+|+|++++.. +..+.+       +.      ...++++++++||+|++|+|.
T Consensus         2 IgfIG~G~mg~~l~~~L-~~-~~~~~~v~~R~~~~~~-~l~~~~-------~~------~~~~~~~~~~~~DiVil~v~d   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECL-KD-RYEIGYILSRSIDRAR-NLAEVY-------GG------KAATLEKHPELNGVVFVIVPD   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTT-C-----CCCEECSSHHHHH-HHHHHT-------CC------CCCSSCCCCC---CEEECSCT
T ss_pred             EEEEeCcHHHHHHHHHH-Hh-CCCEEEEEeCChhhhc-chhhcc-------cc------cccchhhhhccCcEEEEeccc
Confidence            79999999999999987 44 344 358999876532 222222       11      234677889999999999994


Q ss_pred             ChhhhhcccHHHHhcC-CCCcEEEEcCCCccc
Q 016162          247 DKTTYHLINKERLATM-KKEAILVNCSRGPVI  277 (394)
Q Consensus       247 t~~t~~li~~~~l~~m-k~gailIN~aRG~~v  277 (394)
                      . ..     .+.+..+ +++.++|+++.+...
T Consensus        66 ~-~i-----~~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          66 R-YI-----KTVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             T-TH-----HHHHTTTCCSSCCEEECCSSSCG
T ss_pred             h-hh-----hHHHhhhcccceeeeecccchhh
Confidence            3 33     3344555 479999999887653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.7e-06  Score=72.90  Aligned_cols=131  Identities=14%  Similarity=0.119  Sum_probs=87.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHH--HHHHHhhhhhhhhcCCCC-------------ccccccCCH
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQP-------------VTWKRASSM  230 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l  230 (394)
                      ++|+|||.|.||+.+|..+ ...|++|+.||+++....  .+..+.....+...+...             .......++
T Consensus         5 kkvaViGaG~mG~~iA~~~-a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVA-AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHHHHHHHHHH-HhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            6999999999999999987 578999999999986421  111111111111112110             012235688


Q ss_pred             HHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016162          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (394)
Q Consensus       231 ~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~  300 (394)
                      .+.+++||+|+=++|-+.+.+.-+-.+.=+.++++++|...+.+-  ....|...+.. .-+..++-.|.
T Consensus        84 ~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~-p~r~ig~Hffn  150 (192)
T d1f0ya2          84 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTR-QDRFAGLHFFN  150 (192)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEECS
T ss_pred             HhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhccC-HhHEEeecccc
Confidence            899999999999999887776555566666789999887655533  34556666553 34667776663

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.33  E-value=3.7e-06  Score=74.28  Aligned_cols=107  Identities=23%  Similarity=0.292  Sum_probs=79.1

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (394)
                      +|+|+||+|-|+|++|+.+|+.| ...|++|+++|.+.......  ..       .+.      ...+.++++. .||++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L-~~~Gakvvv~d~d~~~~~~~--~~-------~g~------~~~~~~~~~~~~~DI~   87 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTERVAHA--VA-------LGH------TAVALEDVLSTPCDVF   87 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH--HH-------TTC------EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEecchHHHHHHH--Hh-------hcc------cccCccccccccceee
Confidence            69999999999999999999997 78999999999987542211  11       111      2346677775 79999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +-|-     +.+.|+++....++- .+++..+.+.+.++++ -+.|++..+
T Consensus        88 iPcA-----~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~~-~~~L~~rgI  131 (201)
T d1c1da1          88 APCA-----MGGVITTEVARTLDC-SVVAGAANNVIADEAA-SDILHARGI  131 (201)
T ss_dssp             EECS-----CSCCBCHHHHHHCCC-SEECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred             eccc-----ccccccHHHHhhhhh-heeeccCCCCcchhhH-HHHhcccce
Confidence            8764     367799999998864 5778888888877653 455665544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.28  E-value=1.1e-06  Score=73.92  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      .+|||||+|+||+++++.|.+.-+.+|++|||+++.. +...++|       +     .....+.++ +.+||+|+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~~-------~-----~~~~~~~~~-v~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKEL-------G-----VETSATLPE-LHSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHHT-------C-----CEEESSCCC-CCTTSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhhc-------c-----ccccccccc-ccccceEEEecC
Confidence            4799999999999999987544348999999997653 2222222       1     112334444 678999999997


Q ss_pred             CChhhhhcccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHH
Q 016162          246 LDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLK  287 (394)
Q Consensus       246 lt~~t~~li~~~~l~~m-k~gailIN~aRG~~vde~aL~~aL~  287 (394)
                        |+..    .+.++.+ +.+.++|++.-|-.  .+.|.+.+.
T Consensus        67 --P~~~----~~v~~~l~~~~~~viS~~ag~~--~~~l~~~l~  101 (152)
T d1yqga2          67 --PQDM----EAACKNIRTNGALVLSVAAGLS--VGTLSRYLG  101 (152)
T ss_dssp             --HHHH----HHHHTTCCCTTCEEEECCTTCC--HHHHHHHTT
T ss_pred             --HHHH----HHhHHHHhhcccEEeecccCCC--HHHHHHHhC
Confidence              4321    2334333 35789999887764  455666653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.20  E-value=2.9e-06  Score=73.85  Aligned_cols=146  Identities=18%  Similarity=0.139  Sum_probs=89.7

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH--HHHhhhhhhhhcCCCCc--------cccccCCHHHHhc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPV--------TWKRASSMDEVLR  235 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~  235 (394)
                      ++|+|||.|.||+.+|..+ ...|++|+.||++.+.....  ............+....        ......+. +.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~-a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~   82 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQS-ASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG   82 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHH-HHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-cccc
Confidence            5799999999999999887 47799999999987642111  11111111111111110        00111233 3478


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCce
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nv  315 (394)
                      +||+|+=++|-+.+.+.=+-.+.-+.++++++|...+.+-.  ...|.+++.. .-+..++-.|.  |....||.+   |
T Consensus        83 ~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~--i~~la~~~~~-p~r~~g~Hf~n--P~~~~~lVE---i  154 (186)
T d1wdka3          83 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS--ISLLAKALKR-PENFVGMHFFN--PVHMMPLVE---V  154 (186)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC--HHHHGGGCSC-GGGEEEEECCS--STTTCCEEE---E
T ss_pred             ccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccccc--HHHHHHhccC-chheEeecccc--CcccCCeEE---E
Confidence            99999999998888776666777788899999977666544  4566666553 34566666553  222234444   4


Q ss_pred             EEcCCC
Q 016162          316 IVVPHI  321 (394)
Q Consensus       316 ilTPHi  321 (394)
                      +-+|+.
T Consensus       155 v~~~~T  160 (186)
T d1wdka3         155 IRGEKS  160 (186)
T ss_dssp             EECSSC
T ss_pred             CCCCCC
Confidence            545543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.13  E-value=2.3e-06  Score=73.38  Aligned_cols=97  Identities=23%  Similarity=0.306  Sum_probs=71.4

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      -|++|+|+|||||.-|++=|..| +--|.+|++--|......+.        .+..|     + ...+++|..++||+|.
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNL-rDSG~~V~VGLr~gs~s~~~--------A~~~G-----f-~v~~~~eA~~~aDiim   77 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK--------AEAHG-----L-KVADVKTAVAAADVVM   77 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH--------HHHTT-----C-EEECHHHHHHTCSEEE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhh-hhcCCCEEEEcCCCCccHHH--------Hhhhc-----c-ccccHHHHhhhcCeee
Confidence            47899999999999999999998 78888887655543322111        11122     2 2368999999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +.+| +.....++.++....||+|+.+. .++|-
T Consensus        78 ~L~P-D~~q~~vy~~~I~p~lk~g~~L~-FaHGf  109 (182)
T d1np3a2          78 ILTP-DEFQGRLYKEEIEPNLKKGATLA-FAHGF  109 (182)
T ss_dssp             ECSC-HHHHHHHHHHHTGGGCCTTCEEE-ESCCH
T ss_pred             eecc-hHHHHHHHHHhhhhhcCCCcEEE-Eeccc
Confidence            9999 34445667778899999998765 45554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.99  E-value=2.1e-05  Score=68.93  Aligned_cols=158  Identities=13%  Similarity=0.078  Sum_probs=92.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh--------hhhhhhcCCCCccccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      ++|+|||+|.+|..+|..+ ...|.+|++||.+.... +......        ...+.. ...........++++.+..|
T Consensus         1 MkI~ViGlG~vGl~~a~~l-a~~g~~V~g~D~n~~~i-~~ln~g~~p~~e~~~~~~l~~-~~~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCL-SARGHEVIGVDVSSTKI-DLINQGKSPIVEPGLEALLQQ-GRQTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHH-HHHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHhHHHHHHHH-HhCCCcEEEEeCCHHHH-HHhcccCCcccchhhhhhhhh-hhcccccccCCCHHHHHhhC
Confidence            4799999999999999998 47799999999876531 1110000        000000 00000112346888999999


Q ss_pred             CEEEEcCCCChhh----------hhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCcceEEeec-cCC
Q 016162          238 DVISLHPVLDKTT----------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRVGLDV-FED  301 (394)
Q Consensus       238 DiV~l~lPlt~~t----------~~li~--~~~l~~mk~gailIN~aRG~~vde~aL~~aL-~~--g~l~gaalDV-~~~  301 (394)
                      |++++|+| ||..          ...++  ...+...+++.++|--|+-.+--++.+...+ ++  +...+--+.+ |.+
T Consensus        78 d~i~i~Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~P  156 (202)
T d1mv8a2          78 DVSFICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP  156 (202)
T ss_dssp             SEEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred             CEEEEecC-ccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhh
Confidence            99999999 4321          11221  2345667789999999987766666655433 22  2222212222 555


Q ss_pred             CCCCC----CccccCCceEEcCCCCCCcHHHHHH
Q 016162          302 EPYMK----PGLSEMKNAIVVPHIASASKWTREG  331 (394)
Q Consensus       302 EP~~~----~~L~~~~nvilTPHia~~t~~~~~~  331 (394)
                      |-+..    ..+...|.+++    |+.+.++.+.
T Consensus       157 E~~~~G~a~~d~~~~~~iVi----G~~~~~~~~~  186 (202)
T d1mv8a2         157 EFLRESTAIKDYDFPPMTVI----GELDKQTGDL  186 (202)
T ss_dssp             CCCCTTSHHHHHHSCSCEEE----EESSHHHHHH
T ss_pred             hhhcccchhhhhcCCCeEEE----EeCCHHHHHH
Confidence            65533    14566677664    5666655443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=4.1e-06  Score=70.30  Aligned_cols=97  Identities=9%  Similarity=0.079  Sum_probs=65.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC--ccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      ++|+|||.|.||+.+|..| ...|.+|..++|.......         ....+...  .......+..+.+..+|+|+++
T Consensus         1 MkI~IiGaG~iG~~~a~~L-~~~G~~V~~~~r~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPYCS---------VNLVETDGSIFNESLTANDPDFLATSDLLLVT   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSEEE---------EEEECTTSCEEEEEEEESCHHHHHTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCceEEEEcCHHHhhh---------hccccCCccccccccccchhhhhcccceEEEe
Confidence            4899999999999999998 5779999999998754211         01111111  1111123445678899999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      ++. .++...+ +.....+++++.++.+..|
T Consensus        71 vka-~~~~~~~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          71 LKA-WQVSDAV-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             SCG-GGHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             ecc-cchHHHH-HhhccccCcccEEeeccCc
Confidence            993 4555543 4445667889999888776

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=5.1e-06  Score=63.90  Aligned_cols=71  Identities=24%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      +++||+|.|+|+|..|+++|+.| ...|++|+++|.........       .+..    ...+.....-++.+.+.|+|+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLD-------KLPE----AVERHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHH-HHTTCCCEEEESSSSCTTGG-------GSCT----TSCEEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHH-HHCCCEEEEeeCCcCchhHH-------HHhh----ccceeecccchhhhccCCEEE
Confidence            57899999999999999999997 78999999999876532111       0111    111111111245678899998


Q ss_pred             EcC
Q 016162          242 LHP  244 (394)
Q Consensus       242 l~l  244 (394)
                      +..
T Consensus        70 ~SP   72 (93)
T d2jfga1          70 ASP   72 (93)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            863

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.94  E-value=5.6e-06  Score=72.27  Aligned_cols=108  Identities=16%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhh-h-hhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-G-QFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ++-++|+|||.|..|.++|..| ..-|.+|..|+|+.+... ...+.- . ..+.. -..+.......++++++..+|+|
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~L-a~~g~~V~l~~r~~~~~~-~i~~~~~n~~yl~~-~~l~~~i~~t~~l~~a~~~ad~i   81 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEEVR-LVNEKRENVLFLKG-VQLASNITFTSDVEKAYNGAEII   81 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHH-HTTEEEEEEECSCHHHHH-HHHHHTBCTTTSTT-CBCCTTEEEESCHHHHHTTCSCE
T ss_pred             ceeceEEEECCCHHHHHHHHHH-HHcCCeEEEEEecHHHHH-HHhhcccccccccc-cccccccccchhhhhccCCCCEE
Confidence            4456899999999999999998 466889999999765421 110000 0 00000 01111223346899999999999


Q ss_pred             EEcCCCChhhhhcccHH---H-HhcCCCCcEEEEcCCC
Q 016162          241 SLHPVLDKTTYHLINKE---R-LATMKKEAILVNCSRG  274 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~---~-l~~mk~gailIN~aRG  274 (394)
                      ++++| +...+.++..-   . ....+++..+|+++-|
T Consensus        82 iiavP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          82 LFVIP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             EECSC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             EEcCc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            99999 34444444221   0 1123567788998876

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.92  E-value=2.3e-05  Score=67.43  Aligned_cols=107  Identities=20%  Similarity=0.220  Sum_probs=65.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhh-hhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|+|||.|.+|..+|..|+ .-|.+|..|.|.......+........ ...............++++.++.+|+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            48999999999999999985 568899999885443221111100000 0000001111223468899999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  276 (394)
                      | +...+..+ ++....+++. .+|.++.|..
T Consensus        80 p-s~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          80 S-TDGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             C-GGGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             c-hhhhHHHH-Hhhccccccc-eecccccCcc
Confidence            9 34555554 3445556655 5666667654

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.88  E-value=1.7e-05  Score=70.16  Aligned_cols=96  Identities=21%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             ccCC-CeEEEEecChHHHHHHHHHHhc------CCcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH
Q 016162          162 LLKG-QTVGVIGAGRIGSAYARMMVEG------FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (394)
Q Consensus       162 ~l~g-ktvGIIGlG~IG~~vA~~la~~------~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (394)
                      -++| |+|+|||||.-|++=|..| +-      .|.+|++ ..+.......         .+..|...... ...+.+|.
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNL-rDSG~~~~sgv~V~VGLr~gs~S~~k---------A~~dGf~v~~~-~v~~v~EA  108 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNL-KDSLTEAKSDVVVKIGLRKGSNSFAE---------ARAAGFSEENG-TLGDMWET  108 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHH---------HHHTTCCGGGT-CEEEHHHH
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhC-hhhcccccCCceEEEEeCCCChhHHH---------HHHcCCccCCC-cccCHHHH
Confidence            4678 8999999999999999998 54      5666654 4333222111         11223211111 13478999


Q ss_pred             hcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       234 l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      .++||+|.+.+|.. ....+. ++....||+|+.+.=
T Consensus       109 v~~ADiVmiLlPDe-~Q~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         109 ISGSDLVLLLISDS-AQADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HHTCSEEEECSCHH-HHHHHH-HHHHHHSCTTCEEEE
T ss_pred             HhhCCEEEEecchH-HHHHHH-HHHHHhcCCCceeee
Confidence            99999999999943 334556 478899999997754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=3.1e-05  Score=65.94  Aligned_cols=79  Identities=15%  Similarity=0.141  Sum_probs=65.0

Q ss_pred             ccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       160 g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +.++.||++.|||-+. +|+.+|..| ...|++|+..+.+.                            .++.+.+++||
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL-~~~gatVt~~h~~t----------------------------~~l~~~~~~AD   82 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENAD   82 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCS
T ss_pred             CcccccceEEEEeccccccHHHHHHH-HHhhcccccccccc----------------------------chhHHHHhhhh
Confidence            4579999999999998 899999997 68899998876432                            36778899999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      +|+.++..    .++|..+.   .|+|+++||++--
T Consensus        83 ivI~a~G~----p~~i~~~~---vk~g~vvIDvGi~  111 (166)
T d1b0aa1          83 LLIVAVGK----PGFIPGDW---IKEGAIVIDVGIN  111 (166)
T ss_dssp             EEEECSCC----TTCBCTTT---SCTTCEEEECCCE
T ss_pred             HhhhhccC----cccccccc---cCCCcEEEecCce
Confidence            99999872    46677664   4899999999753

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.79  E-value=0.00011  Score=65.88  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-cccCE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDi  239 (394)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++.|.+.... ......+       +.      ...+.++++ ..||+
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L-~~~Gakvv~~d~~~~~~-~~~~~~~-------g~------~~~~~~~~~~~~cDI   99 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAAV-SAAVAEE-------GA------DAVAPNAIYGVTCDI   99 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHH-------CC------EECCGGGTTTCCCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEeecccHHHH-HHHHHhc-------CC------cccCCcccccccccE
Confidence            479999999999999999999998 79999999999886542 2222222       11      123445554 57999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      ++-|.-     .+.|+++....++ -.+++..+...+.+.++.....+.|
T Consensus       100 l~PcA~-----~~~I~~~~~~~l~-ak~Ive~ANn~~t~~ea~~~L~~rG  143 (230)
T d1leha1         100 FAPCAL-----GAVLNDFTIPQLK-AKVIAGSADNQLKDPRHGKYLHELG  143 (230)
T ss_dssp             EEECSC-----SCCBSTTHHHHCC-CSEECCSCSCCBSSHHHHHHHHHHT
T ss_pred             eccccc-----ccccChHHhhccC-ccEEEecccCCCCCchHHHHHHhhC
Confidence            998853     6778888888886 4588888988998877654333433

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=8e-05  Score=63.68  Aligned_cols=108  Identities=16%  Similarity=0.137  Sum_probs=66.4

Q ss_pred             ccccccCCCeEEEEecChH-HHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          158 FVGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       158 ~~g~~l~gktvGIIGlG~I-G~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      ..|.+++||++.|||-++| |+.+|.+| ..-|+.|+..+...........+   ....+.+.........+.+++...+
T Consensus        22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL-~~~gaTVt~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lk~~~~~   97 (171)
T d1edza1          22 PEGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTRGES---LKLNKHHVEDLGEYSEDLLKKCSLD   97 (171)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEESCCC---SSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred             cccCCCCCCEEEEECCccccHHHHHHHH-HHCCCEEEEeccccccccccccc---eeeeeeccccccccchhHHhhcccc
Confidence            4577999999999999875 99999998 67899999887653221000000   0000000000000011237788889


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      +|+|+.++|.. .  ..+..++   .|+|+++||++-..
T Consensus        98 aDIvIsavG~p-~--~~i~~d~---ik~GavvIDvGi~~  130 (171)
T d1edza1          98 SDVVITGVPSE-N--YKFPTEY---IKEGAVCINFACTK  130 (171)
T ss_dssp             CSEEEECCCCT-T--CCBCTTT---SCTTEEEEECSSSC
T ss_pred             CCEEEEccCCC-c--cccChhh---cccCceEeeccccc
Confidence            99999999832 1  1144433   48999999998654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=3.1e-05  Score=62.84  Aligned_cols=76  Identities=12%  Similarity=0.211  Sum_probs=52.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc-c-ccccCCHHHH-hcccCEEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL  242 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~l  242 (394)
                      |++.|+|+|++|+.+|+.| ...|.+|+++|.++.....         +...+.... + ......++++ +.+||.|++
T Consensus         1 k~~iIiG~G~~G~~la~~L-~~~g~~vvvid~d~~~~~~---------~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKVNA---------YASYATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHHHH---------TTTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEecCcHHHHHH---------HHHhCCcceeeecccchhhhccCCccccEEEE
Confidence            6789999999999999998 7899999999998765321         122221111 0 0112235555 789999999


Q ss_pred             cCCCChhhh
Q 016162          243 HPVLDKTTY  251 (394)
Q Consensus       243 ~lPlt~~t~  251 (394)
                      ++|.+.++.
T Consensus        71 ~~~~~~~~~   79 (134)
T d2hmva1          71 AIGANIQAS   79 (134)
T ss_dssp             CCCSCHHHH
T ss_pred             EcCchHHhH
Confidence            999665543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.3e-05  Score=64.77  Aligned_cols=83  Identities=18%  Similarity=0.325  Sum_probs=65.6

Q ss_pred             ccccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       160 g~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +.+++||++.|||-+. +|+.+|..| ..-|++|+.++.+.                            .++.+.+++||
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL-~~~gatVt~~~~~t----------------------------~~l~~~~~~aD   84 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGD   84 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCS
T ss_pred             CcccccceEEEEecCCccchHHHHHH-HhccCceEEEeccc----------------------------ccHHHHHhhcc
Confidence            4689999999999987 899999998 67899999887532                            36778899999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  278 (394)
                      +|+.+++.    .+++..+.   .|+|+++||++--.+.|
T Consensus        85 ivi~a~G~----~~~i~~~~---vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          85 ILVVATGQ----PEMVKGEW---IKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             EEEECCCC----TTCBCGGG---SCTTCEEEECCCBC---
T ss_pred             chhhcccc----cccccccc---ccCCCeEeccCcccccc
Confidence            99999873    55676654   58999999997654433

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.70  E-value=0.00014  Score=62.83  Aligned_cols=144  Identities=13%  Similarity=0.204  Sum_probs=87.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHh-------hhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-------YGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      ++|+|||+|.+|..+|..+  +.|.+|++||.+.... +.....       .-+.+......  ......+......++|
T Consensus         1 MkI~ViGlG~vGl~~a~~~--a~g~~V~g~Din~~~v-~~l~~g~~p~~e~~l~~~~~~~~~--~~~~~~~~~~~~~~~~   75 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL--SLQNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKSKQL--SIKATLDSKAAYKEAE   75 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH--TTTSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHHSCC--CEEEESCHHHHHHHCS
T ss_pred             CEEEEECCChhHHHHHHHH--HCCCcEEEEECCHHHH-HHHhhcccccchhhHHHHhhhhhh--hhhccchhhhhhhccc
Confidence            4799999999999999765  4699999999987542 111000       00000000111  1122245666688999


Q ss_pred             EEEEcCCCChhhh-hccc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-C--
Q 016162          239 VISLHPVLDKTTY-HLIN-------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P--  307 (394)
Q Consensus       239 iV~l~lPlt~~t~-~li~-------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~-~--  307 (394)
                      ++++|+|...... ...+       .+.+...+++.++|--+.-.+-..+.+..-+.+-++      +|.+|-+.. .  
T Consensus        76 ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~------~~~PE~i~~G~ai  149 (196)
T d1dlja2          76 LVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRI------IFSPEFLRESKAL  149 (196)
T ss_dssp             EEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCE------EECCCCCCTTSTT
T ss_pred             cccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhh------ccchhhcchhhhH
Confidence            9999999544322 1111       122334567888888888777777778777766543      356676643 1  


Q ss_pred             -ccccCCceEEcCC
Q 016162          308 -GLSEMKNAIVVPH  320 (394)
Q Consensus       308 -~L~~~~nvilTPH  320 (394)
                       .+...|++++--+
T Consensus       150 ~d~~~p~riv~G~~  163 (196)
T d1dlja2         150 YDNLYPSRIIVSCE  163 (196)
T ss_dssp             HHHHSCSCEEEECC
T ss_pred             hhccCCCEEEEeCC
Confidence             3566677775443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.64  E-value=0.0001  Score=69.72  Aligned_cols=98  Identities=20%  Similarity=0.299  Sum_probs=71.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -++++|||.|..+..-++.+..-++. +|.+|||++... +++.+.+    .  ...+..+....++++.++.||+|+.|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~-~~~~~~l----~--~~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANL----K--EYSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHH----T--TCTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHH-HHHHHhh----h--hccCCCceecCCHHHHHhcCCceeec
Confidence            46999999999999988877556766 799999998653 2233222    1  12234445568999999999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++ ++.+..+|..+   .+|||+.+..++.
T Consensus       201 Ta-s~s~~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         201 TA-DKAYATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             CC-CSSEEEEECGG---GCCTTCEEEECSC
T ss_pred             cc-cCCCCcccchh---hcCCCCEEeeccc
Confidence            87 45566777765   4589999888764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.49  E-value=4.7e-05  Score=63.89  Aligned_cols=98  Identities=8%  Similarity=0.087  Sum_probs=59.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|.|||.|.||+.+|+.| ..-|.+|+++||+.... .+..+.+...    ............+++.+...|+++.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L-~~~g~~V~v~dr~~~~a-~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVL-TDSGIKVTVACRTLESA-KKLSAGVQHS----TPISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHH-HTTTCEEEEEESCHHHH-HHHHTTCTTE----EEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECChHHH-HHHHhccccc----ccccccccchhhhHhhhhccceeEee
Confidence            378999999999999999998 56799999999998753 2222221100    00000001112456778889999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|.....  .+   .....+.+..+++.+
T Consensus        75 ~~~~~~~--~~---~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          75 IPYTFHA--TV---IKSAIRQKKHVVTTS   98 (182)
T ss_dssp             SCGGGHH--HH---HHHHHHHTCEEECSS
T ss_pred             ccchhhh--HH---HHHHHhhccceeecc
Confidence            8843221  11   122234556666665

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.00027  Score=59.80  Aligned_cols=77  Identities=18%  Similarity=0.161  Sum_probs=52.5

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHH-HhcccCE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADV  239 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDi  239 (394)
                      .++.||+|.|+|.|..+++++..| ...|++|++++|+.++.. ...+.+    ...+.  .   ...++++ ...++|+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al-~~~g~~i~I~nRt~~ka~-~l~~~~----~~~~~--~---~~~~~~~~~~~~~dl   82 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRAE-ELAKLF----AHTGS--I---QALSMDELEGHEFDL   82 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHH-HHHHHT----GGGSS--E---EECCSGGGTTCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHh-cccceEEEeccchHHHHH-HHHHHH----hhccc--c---cccccccccccccce
Confidence            468899999999999999999987 578999999999986532 222221    11111  1   1122222 2467999


Q ss_pred             EEEcCCCCh
Q 016162          240 ISLHPVLDK  248 (394)
Q Consensus       240 V~l~lPlt~  248 (394)
                      |+.|+|..-
T Consensus        83 iIN~Tp~G~   91 (170)
T d1nyta1          83 IINATSSGI   91 (170)
T ss_dssp             EEECCSCGG
T ss_pred             eecccccCc
Confidence            999999543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00012  Score=62.94  Aligned_cols=83  Identities=19%  Similarity=0.220  Sum_probs=53.6

Q ss_pred             ccccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH--HHHHHHhhhhhhhhcCCCCcc---ccccCCHHHH
Q 016162          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVT---WKRASSMDEV  233 (394)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~el  233 (394)
                      |.+++||++.|+|.|..|++++..+ ...|. +++.++|+.+..  .....+.+..    .......   +....++.+.
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al-~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~   87 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDEFFDKALAFAQRVNE----NTDCVVTVTDLADQQAFAEA   87 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHHHHHHHHHHHH----HSSCEEEEEETTCHHHHHHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-hhcCCceEeeeccchHHHHHHHHHHHHHHh----hcCcceEeeecccccchhhh
Confidence            3578999999999999999999887 45677 789999986532  1112221111    0011111   1111235567


Q ss_pred             hcccCEEEEcCCCC
Q 016162          234 LREADVISLHPVLD  247 (394)
Q Consensus       234 l~~aDiV~l~lPlt  247 (394)
                      +.++|+|+.|+|..
T Consensus        88 ~~~~diiIN~Tp~G  101 (182)
T d1vi2a1          88 LASADILTNGTKVG  101 (182)
T ss_dssp             HHTCSEEEECSSTT
T ss_pred             hcccceeccccCCc
Confidence            88999999999954

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=0.00064  Score=60.81  Aligned_cols=124  Identities=19%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch----------hhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .+++|+|+.|=|+|++|+.+|+.|.+..|++|++.+...          ...+..+.+..+.      ..........+.
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~------~~~~~~~~~~~~  100 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGT------VVTYPKGERITN  100 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSC------STTCSSCEEECH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcc------eeccccceeecc
Confidence            578999999999999999999987557899998765321          1112222222111      111111123466


Q ss_pred             HHHhc-ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016162          231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (394)
Q Consensus       231 ~ell~-~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~  299 (394)
                      ++++. .||+++-|.     ..+.|+++....++- .+++-.+.+.+. .++ .+.|.+..+ -.+-|..
T Consensus       101 ~~~~~~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI-~~~PD~~  161 (234)
T d1b26a1         101 EELLELDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGI-LVVPDIL  161 (234)
T ss_dssp             HHHHTSCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTC-EEECHHH
T ss_pred             ccccccccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCe-EEechHH
Confidence            77776 899998774     367899999999975 478888888874 444 466666544 3444433

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.41  E-value=0.00035  Score=56.41  Aligned_cols=92  Identities=12%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCC---HHHH-hcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV~  241 (394)
                      ++|.|+|+|++|+.+|+.| ...|.+|++.|.++... +...+.+       +. ........+   ++++ +.++|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L-~~~g~~v~vid~d~~~~-~~~~~~~-------~~-~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEI-------DA-LVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHC-------SS-EEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCCcceecCChhhh-hhhhhhh-------hh-hhccCcccchhhhhhcChhhhhhhc
Confidence            4799999999999999998 78999999999987642 2111111       11 111111223   3333 68899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEE
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailI  269 (394)
                      .+++..+  ..++-......+.+..+++
T Consensus        71 ~~t~~d~--~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          71 AVTGKEE--VNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             ECCSCHH--HHHHHHHHHHHTTCCCEEE
T ss_pred             ccCCcHH--HHHHHHHHHHHcCCceEEE
Confidence            9887433  3334344455566665554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.33  E-value=0.00055  Score=58.89  Aligned_cols=84  Identities=13%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             cccccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       159 ~g~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .|.+|+||++.|.| -|.||+.+|+.| ...|++|+..+|+.++.. +..+.+.... .............++++.+.+.
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~l-a~~G~~V~~~~r~~~~~~-~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKAQ-AAADSVNKRF-KVNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHH-HHHHHHHHHH-TCCCEEEECCSHHHHHHHTTTC
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHH-HhhccchhhcccchHHHH-HHHHHHHhcc-chhhhhhhcccHHHHHHHhcCc
Confidence            35689999999999 799999999998 588999999999976532 2222211100 0001111111223466777888


Q ss_pred             CEEEEcCC
Q 016162          238 DVISLHPV  245 (394)
Q Consensus       238 DiV~l~lP  245 (394)
                      |+|+.+.+
T Consensus        94 Dilin~Ag  101 (191)
T d1luaa1          94 HFVFTAGA  101 (191)
T ss_dssp             SEEEECCC
T ss_pred             CeeeecCc
Confidence            88877654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.29  E-value=0.001  Score=59.75  Aligned_cols=118  Identities=17%  Similarity=0.253  Sum_probs=74.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh----------hHHHHHHHhhhh----hhhhcCCCCcccccc
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQ----FLKANGEQPVTWKRA  227 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~  227 (394)
                      +|.|+||.|-|+|++|+.+|+.| ...|++|++.+....          ..+.+..+..+.    ....  ...  ....
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L-~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~--~~~--~~~~  102 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTT--KDN--AEFV  102 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHH--TSC--CCCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhh--ccC--ceEe
Confidence            69999999999999999999998 799999987764311          011100000000    0000  000  0112


Q ss_pred             CCHHHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          228 SSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       228 ~~l~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      .+.++++ ..||+++-|..     .+.|+++...+++ -.+++-.+.+.+ ..++ .+.|.+..+.
T Consensus       103 ~~~~~i~~~~~DIliPcA~-----~~~I~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         103 KNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             SSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             eCcchhccccccEEeecch-----hccccHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            2334554 47999998864     6678888888886 458888899886 5566 3677766543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.27  E-value=0.00056  Score=56.66  Aligned_cols=104  Identities=14%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ..+||+|||.|.+|..+|..|+. ++.-++..||+..........+ ..+.....+  .. .....+.++ ++.||+|++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D-l~~a~~~~~--~~-~~~~~d~~~-~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD-LEDAQAFTA--PK-KIYSGEYSD-CKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHGGGGGSC--CC-EEEECCGGG-GTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH-HhccccccC--Cc-eEeeccHHH-hccccEEEE
Confidence            45699999999999999988743 4456999999887543222112 111011111  11 112345554 689999999


Q ss_pred             cCCCChhhhh------------ccc--HHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYH------------LIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~------------li~--~~~l~~mk~gailIN~aR  273 (394)
                      +... +...+            ++.  .+.+....|.+++|+++.
T Consensus        79 tag~-~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          79 TAGA-PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             eccc-ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            8642 22111            111  123445678899999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0013  Score=55.18  Aligned_cols=95  Identities=19%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh--------
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--------  234 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  234 (394)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+...  .       ++.|..........+..+..        
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~~~rl~~--a-------~~~Ga~~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLSK--A-------KEIGADLVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHHH--H-------HHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCCHHHHHH--H-------HHhCCcccccccccccccccccccccCC
Confidence            467999999999999999985 89999 89999998765321  1       12232222111223444332        


Q ss_pred             cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       235 ~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ...|+|+-|+. ++.+.    +..++.+++|..++.++-
T Consensus        96 ~g~Dvvid~~G-~~~~~----~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTG-AEASI----QAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSC-CHHHH----HHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEeccC-CchhH----HHHHHHhcCCCEEEEEec
Confidence            24799999887 33332    456777889888887753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.23  E-value=0.0007  Score=56.08  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      |||+|||.|.+|..+|-.++. ++.-++..||...........+- .+....... .... ...+. +.++.||+|+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl-~~a~~~~~~-~~~~-~~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDF-QDAMANLEA-HGNI-VINDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHH-HHHGGGSSS-CCEE-EESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhh-hccccccCC-ccce-eccCH-HHhccccEEEEec
Confidence            799999999999999987632 44458999998876432222221 111111111 1111 12343 4589999999986


Q ss_pred             CCCh-------hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016162          245 VLDK-------TTY--------HLIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 Plt~-------~t~--------~li~--~~~l~~mk~gailIN~aR  273 (394)
                      ....       .++        .++.  .+.+....|++++|+++.
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            5321       111        1121  123455678999999865

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.19  E-value=0.0045  Score=55.25  Aligned_cols=116  Identities=25%  Similarity=0.351  Sum_probs=74.5

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch----------hhHHHHHHHhhhhhhhhcCCCCccccccCCHH
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (394)
                      +|.|+||.|-|+|++|+.+|+.|.+.+|++|++.....          ...+.++....      .......-....+.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~------~~~~~~~~~~~~~~~  102 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEH------GSVKDFPGATNITNE  102 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHH------SSSTTCTTSEEECHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhc------cccccCCCCeeeccc
Confidence            59999999999999999999987557899988764321          01111111111      111111001123556


Q ss_pred             HHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       232 ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      +++ ..||+++-|.-     .+.|+++....++- .+++-.+.+++. .++ .+.|.+..+
T Consensus       103 ~i~~~~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI  155 (239)
T d1gtma1         103 ELLELEVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGI  155 (239)
T ss_dssp             HHHHSCCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTC
T ss_pred             ccccccccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCC
Confidence            665 67999998864     67788888888864 588888888874 444 456666544

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.16  E-value=0.0012  Score=60.66  Aligned_cols=115  Identities=17%  Similarity=0.197  Sum_probs=73.6

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch----------hhHHHHHHHhhhhhhhhcCCCCccccccCCH
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .+|.|+||.|=|+|++|+.+|+.| ...|++|++++...          ...+.++....+      ....... ...+.
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L-~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~------~~~~~~~-~~~~~  103 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYL-HRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHG------TILGFPK-AKIYE  103 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTS------SSTTCTT-SCBCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEccchhhccccccchHHHHHHHHHcC------Ceecccc-cccCC
Confidence            479999999999999999999998 78999998775321          112222222111      1111000 11122


Q ss_pred             HHHh-cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       231 ~ell-~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      ++++ ..||+++-|.     +.+.|+.+....++- .+++-.|.|++ ..+|. +.|.+..+
T Consensus       104 ~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA~-~~L~~~gI  157 (293)
T d1hwxa1         104 GSILEVDCDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPT-TPQAD-KIFLERNI  157 (293)
T ss_dssp             SCGGGCCCSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCB-CHHHH-HHHHHTTC
T ss_pred             cccccCCccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCC-CcchH-HHHHHCCC
Confidence            3444 4899998874     367788888888864 48888899886 44553 55655543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.12  E-value=0.00068  Score=63.35  Aligned_cols=94  Identities=16%  Similarity=0.225  Sum_probs=67.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      -+++||||.|..++.-++.+...+.. +|.+|+|+.+.. +.+.+.    +...+.     ....+.++.+..||+|+.+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~-~~~~~~----~~~~~~-----~~~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSY----CEDRGI-----SASVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHH----HHHTTC-----CEEECCHHHHTSSSEEEEC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHH-HHHHHH----HHhcCC-----ccccchhhhhccccEEEEe
Confidence            46899999999999999887656776 899999987653 333222    222221     1234667888999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      +|   .+..++..+   .++||+.++.++..
T Consensus       195 T~---s~~P~~~~~---~l~~G~hv~~iGs~  219 (320)
T d1omoa_         195 TP---SRKPVVKAE---WVEEGTHINAIGAD  219 (320)
T ss_dssp             CC---CSSCCBCGG---GCCTTCEEEECSCC
T ss_pred             cc---Ccccccchh---hcCCCCeEeecCCc
Confidence            77   456677765   46899999998753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00064  Score=57.78  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=33.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~a-k~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccchhheecc-ccccccccccccccccc
Confidence            589999999999999999985 89998 89999998765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00029  Score=59.34  Aligned_cols=96  Identities=17%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccc-cccCC-HHHHhcccCEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASS-MDEVLREADVIS  241 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-l~ell~~aDiV~  241 (394)
                      .|.+|.|+|.|.+|...++.+ +.+|++|+++|++..+...  .+       +.|...... ....+ .+......|+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~a-k~~G~~vi~~~~~~~k~~~--a~-------~lGa~~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKRED--AM-------KMGADHYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTHHH--HH-------HHTCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHh-hhccccccccccchhHHHH--hh-------ccCCcEEeeccchHHHHHhhhcccceEE
Confidence            588999999999999999874 8999999999998764321  12       223221111 11122 334456689998


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .|+.....   .--...++.++++..++.++
T Consensus        97 ~~~~~~~~---~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          97 VCASSLTD---IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             ECCSCSTT---CCTTTGGGGEEEEEEEEECC
T ss_pred             EEecCCcc---chHHHHHHHhhccceEEEec
Confidence            88763221   11134577788888888875

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00087  Score=55.93  Aligned_cols=68  Identities=16%  Similarity=0.280  Sum_probs=46.8

Q ss_pred             eEEEEecChHHHH-HHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          167 TVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       167 tvGIIGlG~IG~~-vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +|||||+|.+|+. ....+...-+.++. ++|++.... ..+.+.|       +     ...+.++++++.+.|+|++++
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------R-----IPYADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------T-----CCBCSSHHHHHTTCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhh-hhhhhcc-------c-----ccccccchhhhhhcccccccc
Confidence            7999999999987 45555323377765 678876543 2233333       1     123568999999999999999


Q ss_pred             CCC
Q 016162          245 VLD  247 (394)
Q Consensus       245 Plt  247 (394)
                      |..
T Consensus        70 p~~   72 (164)
T d1tlta1          70 STA   72 (164)
T ss_dssp             CTT
T ss_pred             cch
Confidence            943

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.01  E-value=0.001  Score=56.56  Aligned_cols=113  Identities=17%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEEc
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~  243 (394)
                      ++||||+|.+|+..++.+...-+++|. ++|++.+.. ..+.+.|       +. +.....+.+++++++  +.|+|+++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~-~~~~~~~-------~~-~~~~~~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATAN-------NY-PESTKIHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------TC-CTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccc-ccchhcc-------cc-ccceeecCcHHHhhhccccceeeec
Confidence            799999999999999887433377877 568876542 2222222       11 111223578999984  57899999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcE-EEEc-CCCcccCHHHHHHHHHcCCcce
Q 016162          244 PVLDKTTYHLINKERLATMKKEAI-LVNC-SRGPVIDEVALVEHLKQNPMFR  293 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gai-lIN~-aRG~~vde~aL~~aL~~g~l~g  293 (394)
                      +|......  +   ....++.|.- ++.- .--.+-+.+.|.+..++.++..
T Consensus        74 tp~~~h~~--~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          74 LPTSLHVE--W---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             CCGGGHHH--H---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             ccchhhcc--h---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            98433222  1   2222333433 3321 1113334466777777665543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.01  E-value=0.001  Score=54.67  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      +||+|||.|.+|..+|-.++. ++.-++..||...........+     +.+.............-.+.++.||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D-----l~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-----INHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-----HTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee-----eccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            489999999999999976632 4455899999877542211111     1111111001111112235589999999984


Q ss_pred             C--CChh-hh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016162          245 V--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 P--lt~~-t~-~li--~-------~~~l~~mk~gailIN~aR  273 (394)
                      -  ..+. ++ .++  |       .+.+....|.+++++++.
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence            3  2221 11 111  1       123444568889999876

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.01  E-value=0.00069  Score=57.20  Aligned_cols=83  Identities=16%  Similarity=0.228  Sum_probs=52.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .+|||+|+|.||+..++.+...-+++++ ++|++....                 .........+.++++.+.|+|++|+
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----------------TKTPVFDVADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----------------SSSCEEEGGGGGGTTTTCSEEEECS
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc-----------------cccccccchhhhhhccccceEEEeC
Confidence            4799999999999999997433377766 556654321                 0112223456777888999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEE
Q 016162          245 VLDKTTYHLINKERLATMKKEAILVN  270 (394)
Q Consensus       245 Plt~~t~~li~~~~l~~mk~gailIN  270 (394)
                      |......     -....++.|.-+|.
T Consensus        67 p~~~h~~-----~a~~aL~aG~~vv~   87 (170)
T d1f06a1          67 GSATDIP-----EQAPKFAQFACTVD   87 (170)
T ss_dssp             CTTTHHH-----HHHHHHTTTSEEEC
T ss_pred             CCcccHH-----HHHHHHHCCCcEEE
Confidence            9543322     22333455655553

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.98  E-value=0.0014  Score=58.81  Aligned_cols=99  Identities=15%  Similarity=0.129  Sum_probs=70.3

Q ss_pred             ccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC
Q 016162          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM  305 (394)
Q Consensus       226 ~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~  305 (394)
                      ...|+.|.+++||+|++|+|....+..++ ++....+++|++++|+++........+.+.+.+..+     ++....|..
T Consensus       131 v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi-----~vi~~hp~a  204 (242)
T d2b0ja2         131 VTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL-----NITSYHPGC  204 (242)
T ss_dssp             EESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTS-----EEEECBCSS
T ss_pred             EECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCC-----EEECCCccC
Confidence            35789999999999999999766677777 678899999999999999888777888887776543     333445542


Q ss_pred             CCccccCCceEEcCCCCCCcHHHHHHHHH
Q 016162          306 KPGLSEMKNAIVVPHIASASKWTREGMAT  334 (394)
Q Consensus       306 ~~~L~~~~nvilTPHia~~t~~~~~~~~~  334 (394)
                      -+. ..-..+++.   ++.+.|..+.+..
T Consensus       205 ~pe-~~g~~li~~---~~aseE~iekv~e  229 (242)
T d2b0ja2         205 VPE-MKGQVYIAE---GYASEEAVNKLYE  229 (242)
T ss_dssp             CTT-TCCCEEEEE---SSSCHHHHHHHHH
T ss_pred             cCc-cccceEEec---CCCCHHHHHHHHH
Confidence            221 222344443   4567777666543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.97  E-value=0.0011  Score=54.32  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=59.6

Q ss_pred             CeEEEEecChHHHHHHHHHH-hcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .||+|||.|.+|..+|-.++ +++.-++..+|...........+-. +...-..  .... ...+ .+.++.||+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~-~~~~~~~--~~~~-~~~~-~~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLI-HGTPFTR--RANI-YAGD-YADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHH-HHGGGSC--CCEE-EECC-GGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccc-ccccccc--cccc-cCCc-HHHhcCCCEEEEec
Confidence            48999999999999997653 3566799999988654322222210 0000011  1111 1234 44589999999985


Q ss_pred             C--CChh-hh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016162          245 V--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 P--lt~~-t~-~li--~-------~~~l~~mk~gailIN~aR  273 (394)
                      -  ..+. ++ .++  |       .+.+....|++++++++.
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            3  2221 11 111  1       133444568999999875

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.94  E-value=0.00096  Score=55.89  Aligned_cols=93  Identities=14%  Similarity=0.173  Sum_probs=56.2

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcC-CcEEEE-EcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-----ccc
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  237 (394)
                      -++||||.|.||+. +.+.+ +.+ ..++.+ .+++.......+.+.+       +. .  . ...++++++     .+.
T Consensus         5 irvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~~~~~~~a~~~-------~i-~--~-~~~~~d~l~~~~~~~~i   72 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRM-------GV-T--T-TYAGVEGLIKLPEFADI   72 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTTCHHHHHHHHT-------TC-C--E-ESSHHHHHHHSGGGGGE
T ss_pred             cEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchhccchhhhhhc-------CC-c--c-cccceeeeeeccccccc
Confidence            47999999999996 56765 544 446554 5776543322222222       11 1  1 123455543     468


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|++++|...+..   .+..+...+.|.++||-+.
T Consensus        73 DiVf~ATpag~h~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          73 DFVFDATSASAHVQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             EEEEECSCHHHHHH---HHHHHHHHCTTCEEEECST
T ss_pred             CEEEEcCCchhHHH---hHHHHHHHHcCCEEEEccc
Confidence            99999998332322   2344566799999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.91  E-value=0.0013  Score=54.45  Aligned_cols=107  Identities=20%  Similarity=0.314  Sum_probs=60.8

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      -.++||+|||.|.+|..+|..++. ++.-++..||...........+ ..+. .......... ...+ .+.++.||+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D-l~~~-~~~~~~~~~~-~~~d-~~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD-FNHG-KVFAPKPVDI-WHGD-YDDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHHH-TTSSSSCCEE-EECC-GGGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc-HhhC-ccccCCCeEE-EECC-HHHhccceeEE
Confidence            357899999999999999987643 4555899999876542222111 1110 0000111111 1233 35689999999


Q ss_pred             EcCCCC--hh-hh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLD--KT-TY-HLI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt--~~-t~-~li--~~-------~~l~~mk~gailIN~aR  273 (394)
                      ++.-..  +. ++ .++  |.       +.+....|.+++|+++.
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            875422  21 11 111  11       23344457889999854

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.91  E-value=0.00065  Score=58.18  Aligned_cols=78  Identities=17%  Similarity=0.186  Sum_probs=46.3

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhhh-------cCCCCccccccCCHHHHhcccC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKA-------NGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +|||.|||+||+.++|.+...=+++|++. |+.+...... ...|+.....       ......  ....++++++.++|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~v~g~~~~~~~~vD   79 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFI-AHRRGIRIYVPQQSIKKFEESGI--PVAGTVEDLIKTSD   79 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHH-HHHTTCCEECCGGGHHHHHTTTC--CCCCCHHHHHHHCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHH-hcccCcceeccCccceeccccce--ecCCchhhhhhcCC
Confidence            79999999999999999754447888776 4443322211 1111110000       000000  11236788888999


Q ss_pred             EEEEcCCCC
Q 016162          239 VISLHPVLD  247 (394)
Q Consensus       239 iV~l~lPlt  247 (394)
                      +|+-|+|..
T Consensus        80 iViecTG~f   88 (178)
T d1b7go1          80 IVVDTTPNG   88 (178)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCCc
Confidence            999999854

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.91  E-value=0.0043  Score=51.58  Aligned_cols=95  Identities=15%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcc-cc-ccCCHHHH---h----
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WK-RASSMDEV---L----  234 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~el---l----  234 (394)
                      .|.+|.|+|.|.||...++.+ +.+|++|+++|++..+...  .       ++.|..... .. ...+..+.   +    
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~~~r~~~--a-------~~~ga~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRLEV--A-------KNCGADVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHH--H-------HHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEEcccccchhhHhhH-hhhcccccccchHHHHHHH--H-------HHcCCcEEEeccccccccchhhhhhhccc
Confidence            467999999999999999985 8999999999998765311  1       111221110 00 11222222   2    


Q ss_pred             -cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       235 -~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                       ...|+|+-|.. .+.+.    ...+..++++..++.++-
T Consensus        96 g~g~D~vid~~g-~~~~~----~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          96 GDLPNVTIDCSG-NEKCI----TIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             SSCCSEEEECSC-CHHHH----HHHHHHSCTTCEEEECSC
T ss_pred             ccCCceeeecCC-ChHHH----HHHHHHHhcCCceEEEec
Confidence             23688888775 33322    444667788888887753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.85  E-value=0.00073  Score=57.39  Aligned_cols=81  Identities=17%  Similarity=0.122  Sum_probs=53.4

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+++||++.|||.|..+++++..| ...| +|++++|+..+.. +..+.+....   ...........+++..+..+|+|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL-~~~~-~i~I~nR~~~ka~-~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dli   87 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKAE-ALAKEIAEKL---NKKFGEEVKFSGLDVDLDGVDII   87 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHHH-HHHHHHHHHH---TCCHHHHEEEECTTCCCTTCCEE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-cccc-ceeeehhhhhHHH-HHHHHHHHhh---chhhhhhhhhhhhhhccchhhhh
Confidence            469999999999999999999887 5777 9999999976532 1111111000   00000011234556667889999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      +.|+|..
T Consensus        88 In~tp~g   94 (177)
T d1nvta1          88 INATPIG   94 (177)
T ss_dssp             EECSCTT
T ss_pred             ccCCccc
Confidence            9999953

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.80  E-value=0.0017  Score=52.75  Aligned_cols=99  Identities=19%  Similarity=0.127  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH-HHHhhhhhhhhcCCCCccccccCCH
Q 016162          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-FVTAYGQFLKANGEQPVTWKRASSM  230 (394)
Q Consensus       162 ~l~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l  230 (394)
                      .+.+++|||+|+          +.-...+++.| ...|++|.+|||........ ...+|.   .. ...........++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L-~~~g~~V~~~DP~v~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~   84 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYI---ES-KIPHVSSLLVSDL   84 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHH---HH-TSHHHHTTBCSCH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHH-hhhhccccccCCCCCHHHHhhhhhhhh---hh-ccccccceeehhh
Confidence            467899999998          56778899998 78899999999976431100 000000   00 0000011234689


Q ss_pred             HHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016162          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (394)
Q Consensus       231 ~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~  271 (394)
                      ++++..||+|+++++- ++-     .+....++++.+++|+
T Consensus        85 ~e~i~~~D~ivi~t~h-~~f-----~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          85 DEVVASSDVLVLGNGD-ELF-----VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HHHHHHCSEEEECSCC-GGG-----HHHHHSCCTTCEEEES
T ss_pred             hhhhhhceEEEEEeCC-HHH-----HHHHHHhcCCCEEEEC
Confidence            9999999999999983 332     2345567788899997

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.79  E-value=0.0003  Score=59.77  Aligned_cols=77  Identities=14%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      ..+.||++.|+|.|..+++++..|. .-+.+|++++|+.++. +...+.+..    .+  ..  ......+..+.++|+|
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~-~~~~~i~I~nR~~~~a-~~l~~~~~~----~~--~~--~~~~~~~~~~~~~dii   83 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSKT-KELAERFQP----YG--NI--QAVSMDSIPLQTYDLV   83 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHHH-HHHHHHHGG----GS--CE--EEEEGGGCCCSCCSEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHc-ccCceeeeccchHHHH-HHHHHHHhh----cc--cc--chhhhcccccccccee
Confidence            4688999999999999999998874 5678999999997552 222222211    11  00  0111111236789999


Q ss_pred             EEcCCCC
Q 016162          241 SLHPVLD  247 (394)
Q Consensus       241 ~l~lPlt  247 (394)
                      +.|+|..
T Consensus        84 IN~tp~g   90 (171)
T d1p77a1          84 INATSAG   90 (171)
T ss_dssp             EECCCC-
T ss_pred             eeccccc
Confidence            9999954

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.76  E-value=0.0015  Score=55.29  Aligned_cols=94  Identities=15%  Similarity=0.105  Sum_probs=59.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc------c
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (394)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+..  ..+       ..|..........++.+.+.      .
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~a-k~~Ga~~Vi~~d~~~~r~~--~a~-------~lGa~~~i~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGA-KLRGAGRIIGVGSRPICVE--AAK-------FYGATDILNYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSCEEEECCCHHHHH--HHH-------HHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEEcCCcchhhhhhhh-hcccccccccccchhhhHH--HHH-------hhCccccccccchhHHHHHHHHhhccC
Confidence            478999999999999999985 89998 7999999875432  112       22321111111233333322      2


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      .|+|+-|+.. +++   + +..+..++|+..++-++
T Consensus        97 ~D~vid~~g~-~~~---~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          97 VDRVIMAGGG-SET---L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEEEECSSC-TTH---H-HHHHHHEEEEEEEEECC
T ss_pred             cceEEEccCC-HHH---H-HHHHHHHhcCCEEEEEe
Confidence            7888888863 222   1 44566678888888875

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.76  E-value=0.002  Score=53.78  Aligned_cols=110  Identities=15%  Similarity=0.186  Sum_probs=62.8

Q ss_pred             CeEEEEecChHHHH-HHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccCEEEEc
Q 016162          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLH  243 (394)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~  243 (394)
                      .++||||+|.+|+. ....+++.-+.++.++|+++... ..+.+.|       +..    ..+.+.++++. +.|+|++|
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVS----ATCTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCC----CCCSSTTGGGGGCCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHhc-------ccc----cccccHHHhcccccceeccc
Confidence            37999999999987 45665333477888999987543 3333333       111    12456777775 57999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCCc
Q 016162          244 PVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       244 lPlt~~t~~li~~~~l~~mk~gailIN~-aRG~~vde~aL~~aL~~g~l  291 (394)
                      +|.  .+..-+-...++. .. .+++.- ---.+-+.+.|.++.++.++
T Consensus        70 tp~--~~H~~~~~~al~~-gk-~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          70 AAT--DVHSTLAAFFLHL-GI-PTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             SCG--GGHHHHHHHHHHT-TC-CEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccc--ccccccccccccc-cc-ccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            993  3332222333331 22 255542 11233445667776665543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.75  E-value=0.0028  Score=51.84  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=59.3

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .||+|||.|.+|+.+|..++. ++.-++..||...........+.... ..... .........+ .+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~-~~~~~-~~~~i~~~~~-~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES-GPVGL-FDTKVTGSND-YADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTT-HHHHT-CCCEEEEESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcc-cchhc-ccceEEecCC-HHHhcCCeEEEEEE
Confidence            479999999999999988742 33359999998765422221121000 00001 1111222233 45689999999984


Q ss_pred             --CCChh-hhh--------ccc--HHHHhcCCCCcEEEEcCC
Q 016162          245 --VLDKT-TYH--------LIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 --Plt~~-t~~--------li~--~~~l~~mk~gailIN~aR  273 (394)
                        |..+. ++.        ++.  .+.+....|++++++++.
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence              44442 111        110  123333458899999866

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.74  E-value=0.0033  Score=52.25  Aligned_cols=107  Identities=16%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +-+||+|||.|.+|+.+|..++ ..+ .+++.+|.+.........+ ..+.....+. ........+.++.++.||+|++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~-~~~~~el~L~D~~~~~~~g~a~D-l~~~~~~~~~-~~~~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALD-LSHVTSVVDT-NVSVRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHH-HHHHHHHTTC-CCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHH-hCCCceEEEEEeccccchhHHHH-HhhhccccCC-eeEEeccCchhhhhcCCCeEEE
Confidence            4579999999999999997763 333 3899999876432211111 1000000111 1111223467788999999999


Q ss_pred             cCCC--Chh------hhh-cc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          243 HPVL--DKT------TYH-LI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPl--t~~------t~~-li--~~-------~~l~~mk~gailIN~aR  273 (394)
                      +...  .+.      ++. ++  |.       +.+....|.+++++++.
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            8742  111      221 11  11       23444568899999876

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00054  Score=56.57  Aligned_cols=46  Identities=15%  Similarity=0.158  Sum_probs=38.5

Q ss_pred             cccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHH
Q 016162          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (394)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~  205 (394)
                      ...+|+||++.|||.|.+|.+-|+.| ..+|++|++++|...+....
T Consensus         7 l~~~l~gkrvLViGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~   52 (150)
T d1kyqa1           7 LAHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLHKSIIP   52 (150)
T ss_dssp             EEECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEECTTHHH
T ss_pred             hheeeCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHH
Confidence            34579999999999999999999997 68899999998765554433

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0022  Score=50.43  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ...+.||||||-|..|+.+|.. ++.+|.+|+++|++...
T Consensus         8 ~~~~~kigIlGgGQL~rMla~a-A~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIE-CQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHH-HHTTTCEEEEEESSTTC
T ss_pred             CCCCCEEEEEeCCHHHHHHHHH-HHHCCCEEEEEcCCCCC
Confidence            3456789999999999999998 58999999999998754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.61  E-value=0.0037  Score=51.86  Aligned_cols=94  Identities=14%  Similarity=0.182  Sum_probs=57.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi  239 (394)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.|+++.+...         .++.|..........+..+.    ....|.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~~~~---------a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~   96 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAKLEL---------ARKLGASLTVNARQEDPVEAIQRDIGGAHG   96 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHH---------HHHTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhHHHh---------hhccCccccccccchhHHHHHHHhhcCCcc
Confidence            478999999999999999875 8999999999998765311         12223221111112233222    223455


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ++.+... +++   + ...++.++++..++.++
T Consensus        97 ~i~~~~~-~~~---~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          97 VLVTAVS-NSA---F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EEECCSC-HHH---H-HHHHTTEEEEEEEEECC
T ss_pred             ccccccc-chH---H-HHHHHHhcCCcEEEEEE
Confidence            5555542 322   2 34567777887777764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.53  E-value=0.004  Score=52.16  Aligned_cols=108  Identities=13%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .+..++|+|||.|++|+.+|-.++. ++--++..||.+.........+-. +.....+ .. ......+. +-++.||+|
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~-h~~~~~~-~~-~~~~~~d~-~~~~~adiV   92 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQ-HGSLFLQ-TP-KIVADKDY-SVTANSKIV   92 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHH-HTGGGCC-CS-EEEECSSG-GGGTTCSEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHh-ccccccC-CC-eEEeccch-hhcccccEE
Confidence            4667899999999999999988742 344489999998655332222211 1000011 11 11122343 458999999


Q ss_pred             EEcCC--CCh-hhhh-cc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          241 SLHPV--LDK-TTYH-LI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lP--lt~-~t~~-li--~~-------~~l~~mk~gailIN~aR  273 (394)
                      +++.-  ..+ +++- ++  |.       ..+....+.+++|.++.
T Consensus        93 VitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          93 VVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            98753  222 2221 11  11       23334468889999876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.49  E-value=0.0041  Score=51.37  Aligned_cols=94  Identities=15%  Similarity=0.238  Sum_probs=61.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH----HHHhcccCE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~~aDi  239 (394)
                      .|.+|.|.|.|.||...++.+ +..|.+|++.+++..+..  +       ++..|..........++    .+.-...|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a-~~~g~~v~~~~~~~~r~~--~-------~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLE--L-------AKELGADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH--H-------HHHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeecccchhhhhHHH-hcCCCeEeccCCCHHHhh--h-------hhhcCcceecccccchhhhhcccccCCCce
Confidence            478999999999999988885 899999999998876532  2       22233322211122233    333455677


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ++.+.+ .+++.    ...+..++++..++.++
T Consensus        97 ~v~~~~-~~~~~----~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAV-SKPAF----QSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSC-CHHHH----HHHHHHEEEEEEEEECC
T ss_pred             EEeecC-CHHHH----HHHHHHhccCCceEecc
Confidence            777665 33332    56677788888888875

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.49  E-value=0.0063  Score=51.19  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=47.1

Q ss_pred             CeEEEEecChHH--HHHHHHHHh--cCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIGAGRIG--SAYARMMVE--GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG--~~vA~~la~--~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .||.|||.|++|  ..++..++.  .+. .++..+|........+..+....................+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            379999999876  445544422  233 489999987654222222211111111111222333456888899999999


Q ss_pred             EEcCCC
Q 016162          241 SLHPVL  246 (394)
Q Consensus       241 ~l~lPl  246 (394)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999863

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0087  Score=49.95  Aligned_cols=94  Identities=16%  Similarity=0.261  Sum_probs=59.7

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cc
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (394)
                      .|.+|.|.|. |.+|....+. ++.+|++|++.+++.++. + +       +++.|...+......++.+-+      ..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~-a~~~G~~vi~~~~~~~~~-~-~-------~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQI-ARAYGLKILGTAGTEEGQ-K-I-------VLQNGAHEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHH-HHHTTCEEEEEESSHHHH-H-H-------HHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCEEEEEecccccccccccc-ccccCccccccccccccc-c-c-------ccccCcccccccccccHHHHhhhhhccCC
Confidence            5889999995 9999999998 489999999998876432 2 1       222333222111223443332      22


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-|+.  ..+   + ...+..++++..++.++.
T Consensus        98 ~d~v~d~~g--~~~---~-~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          98 IDIIIEMLA--NVN---L-SKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             EEEEEESCH--HHH---H-HHHHHHEEEEEEEEECCC
T ss_pred             ceEEeeccc--HHH---H-HHHHhccCCCCEEEEEec
Confidence            677777654  221   2 456778888888888853

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.46  E-value=0.0028  Score=55.67  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=48.3

Q ss_pred             CCeEEEEecChHHHH-HHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEE
Q 016162          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (394)
Q Consensus       165 gktvGIIGlG~IG~~-vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (394)
                      --+|||||+|.+|+. +...+...-+++|. ++|+++... +.+.+.|       +........+.|+++++.  +.|+|
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a-~~~~~~~-------~i~~~~~~~~~d~~ell~~~~iD~V  104 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEE
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHH-HHHHHhh-------ccccccccccCchhhhcccccceee
Confidence            357999999999985 55655222377777 779887553 3333333       222222334578899886  57899


Q ss_pred             EEcCCC
Q 016162          241 SLHPVL  246 (394)
Q Consensus       241 ~l~lPl  246 (394)
                      ++++|.
T Consensus       105 ~I~tp~  110 (221)
T d1h6da1         105 YIILPN  110 (221)
T ss_dssp             EECSCG
T ss_pred             eeccch
Confidence            999983

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.44  E-value=0.005  Score=50.33  Aligned_cols=105  Identities=19%  Similarity=0.279  Sum_probs=57.3

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      +||+|||.|.+|..+|-.++..--.+++.+|...........+... .....+. ........+.++ ++.||+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~-~~~~~~~-~~~i~~~~d~~~-~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYE-ASPIEGF-DVRVTGTNNYAD-TANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHT-THHHHTC-CCCEEEESCGGG-GTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhc-cccccCC-CCEEEecCcHHH-hcCCCEEEEeee
Confidence            5899999999999999776543224899999876543222222110 0000011 111222245554 789999999874


Q ss_pred             --CChh-hh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          246 --LDKT-TY-HLI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       246 --lt~~-t~-~li--~~-------~~l~~mk~gailIN~aR  273 (394)
                        ..+. ++ .++  |.       +.+....|.++++.++.
T Consensus        79 ~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          79 APRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             ccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence              2222 11 111  11       23334467888988765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.33  E-value=0.002  Score=53.47  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             CeEEEE-ecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       166 ktvGII-GlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +||+|| |.|.||+.+|++| ...|.+|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~l-a~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            479999 8999999999998 5889999999998764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.33  E-value=0.0072  Score=50.98  Aligned_cols=68  Identities=16%  Similarity=0.304  Sum_probs=45.6

Q ss_pred             CeEEEEecChHHHHH-HHHHHhcCC--cEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCE
Q 016162          166 QTVGVIGAGRIGSAY-ARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (394)
Q Consensus       166 ktvGIIGlG~IG~~v-A~~la~~~G--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (394)
                      .++||||+|.+|+.+ +..+ +.++  .++. ++|++.... +.+.+.|       +..    ..+.+++|+++  +.|+
T Consensus         4 irigiIG~G~~g~~~h~~~l-~~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~~~----~~~~~~~ell~~~~id~   70 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMV-------GNP----AVFDSYEELLESGLVDA   70 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHH-------SSC----EEESCHHHHHHSSCCSE
T ss_pred             cEEEEEcCCHHHHHHHHHHH-HhCCCCeEEEEEEeccHhhh-hhhhccc-------ccc----ceeeeeeccccccccce
Confidence            379999999999874 6665 4443  4666 678877543 3333333       111    13578999986  4789


Q ss_pred             EEEcCCC
Q 016162          240 ISLHPVL  246 (394)
Q Consensus       240 V~l~lPl  246 (394)
                      |++++|.
T Consensus        71 v~I~tp~   77 (181)
T d1zh8a1          71 VDLTLPV   77 (181)
T ss_dssp             EEECCCG
T ss_pred             eeccccc
Confidence            9999983

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.28  E-value=0.0034  Score=52.77  Aligned_cols=94  Identities=12%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc-----c
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----A  237 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----a  237 (394)
                      .|.+|.|+|.|.||...++.+ +.+|++ |++.|++..+. + +.+.+       |..........++.+.+.+     .
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~a-k~~g~~~v~~~~~~~~k~-~-~a~~~-------Ga~~~i~~~~~~~~~~i~~~t~gg~   97 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRL-E-LAKQL-------GATHVINSKTQDPVAAIKEITDGGV   97 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH-H-HHHHH-------TCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEeCCCHHHhhhhhcc-cccccceeeeeccHHHHH-H-HHHHc-------CCeEEEeCCCcCHHHHHHHHcCCCC
Confidence            588999999999999999985 788885 55677766542 1 11222       3222211122344443322     6


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|+-|+. ++++.    +..+..++++..++.++
T Consensus        98 D~vid~~G-~~~~~----~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          98 NFALESTG-SPEIL----KQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEEECSC-CHHHH----HHHHHTEEEEEEEEECC
T ss_pred             cEEEEcCC-cHHHH----HHHHhcccCceEEEEEe
Confidence            88888876 33322    45567788888888775

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.27  E-value=0.022  Score=46.29  Aligned_cols=105  Identities=13%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             CeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .||+|||.|++|..+|-.++. ++--++..||...........+ ..+....... ........+. +.++.||+|++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alD-l~~~~~~~~~-~~~i~~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGIDK-YPKIVGGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH-HHHHHHTTTC-CCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHH-HhhhccccCC-CCccccCCCH-HHhccccEEEEec
Confidence            489999999999999987642 3444899999877543222111 1000000111 1112223354 5789999999886


Q ss_pred             C--CChhh-h-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016162          245 V--LDKTT-Y-HLI--N-------KERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 P--lt~~t-~-~li--~-------~~~l~~mk~gailIN~aR  273 (394)
                      .  .++.. + .++  |       .+.+....|.+++++++.
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            3  33321 1 111  1       123455678899999977

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0034  Score=52.37  Aligned_cols=93  Identities=17%  Similarity=0.277  Sum_probs=59.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH---HHHhcccCEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell~~aDiV  240 (394)
                      .|.+|.|+|.|.+|...++.+ +.+|+++++.|+..++..  +.+       +.|.....  ...+.   .......|++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qla-k~~Ga~~i~~~~~~~~~~--~a~-------~lGad~~i--~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKRE--AAK-------ALGADEVV--NSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--HHH-------HHTCSEEE--ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHh-hcccccchhhccchhHHH--HHh-------ccCCcEEE--ECchhhHHHHhcCCCcee
Confidence            488999999999999999985 899999999998776531  112       22322111  11121   2223458888


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +-++... .+.    ...+..++++..++.++.
T Consensus        98 id~~g~~-~~~----~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          98 LNTVAAP-HNL----DDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EECCSSC-CCH----HHHHTTEEEEEEEEECCC
T ss_pred             eeeeecc-hhH----HHHHHHHhcCCEEEEecc
Confidence            8887632 211    344667777777777643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.006  Score=50.97  Aligned_cols=106  Identities=14%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcC-CCCc-cccccCCHHHHhcccC
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPV-TWKRASSMDEVLREAD  238 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~l~ell~~aD  238 (394)
                      .+...+|+|||.|.+|..+|-.++. ++.-++..||...........+     +.+.. .... ......+. +.+..||
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alD-----l~~~~~~~~~~~~~~~~d~-~~~~~ad   89 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALD-----LQHGSLFLSTPKIVFGKDY-NVSANSK   89 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHH-----HHHTTTTCSCCEEEEESSG-GGGTTEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHH-----HhCcchhcCCCeEEeccch-hhhcccc
Confidence            3555689999999999999987632 3444899999886543222222     11111 1111 11122354 4468999


Q ss_pred             EEEEcCC--CChh-hh-hcc--cHHH-------HhcCCCCcEEEEcCC
Q 016162          239 VISLHPV--LDKT-TY-HLI--NKER-------LATMKKEAILVNCSR  273 (394)
Q Consensus       239 iV~l~lP--lt~~-t~-~li--~~~~-------l~~mk~gailIN~aR  273 (394)
                      +|+++.-  ..+. ++ .++  |.+.       +....|++++++++.
T Consensus        90 ivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             EEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            9988753  3332 22 122  1221       223468999999876

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.24  E-value=0.005  Score=50.48  Aligned_cols=104  Identities=17%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             CeEEEEecChHHHHHHHHHH-hcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      .||+|||.|++|..+|-.++ +++.-++..+|........+..+ ..+.....+.  .......+.+ .++.||+|+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D-l~~a~~~~~~--~~i~~~~~~~-~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD-MQHGSSFYPT--VSIDGSDDPE-ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH-HHHTGGGSTT--CEEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH-HHhccccCCC--ceeecCCCHH-HhhCCcEEEEec
Confidence            48999999999999997653 25555899999887543222111 1110001111  1122234554 588999999885


Q ss_pred             C--CCh-hhh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016162          245 V--LDK-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (394)
Q Consensus       245 P--lt~-~t~-~li--~~-------~~l~~mk~gailIN~aR  273 (394)
                      -  ..+ +++ .++  |.       ..+....|+++++.++.
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  119 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN  119 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            3  222 121 111  11       23444568889998874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0045  Score=53.00  Aligned_cols=73  Identities=10%  Similarity=0.061  Sum_probs=49.4

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEE
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV  240 (394)
                      ..|+|.|+| .|.||+.+++.| ..-|.+|.+++|++.+....         ...+..-.  ......++.+.+..+|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~L-l~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHhcCCCEE
Confidence            468999999 799999999987 57799999999987652110         00111000  111123466779999999


Q ss_pred             EEcCCC
Q 016162          241 SLHPVL  246 (394)
Q Consensus       241 ~l~lPl  246 (394)
                      +.++..
T Consensus        72 i~~~g~   77 (205)
T d1hdoa_          72 IVLLGT   77 (205)
T ss_dssp             EECCCC
T ss_pred             EEEecc
Confidence            988763

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0022  Score=47.28  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      |||||+|-|-.|+.++.. ++.+|.+|+++|+...
T Consensus         2 k~vgIlG~GQLgrMl~~A-a~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQA-GEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHH-HGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCEEEEEcCCCC
Confidence            699999999999999998 5899999999998754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.13  E-value=0.0028  Score=53.71  Aligned_cols=82  Identities=22%  Similarity=0.205  Sum_probs=45.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhhhcCCC------CccccccCCHHHHhcccC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQ------PVTWKRASSMDEVLREAD  238 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~ell~~aD  238 (394)
                      .+|||.|||+||+.++|.+...-.++|++. |+.+... ......|+.........      ..+.....++.+++..+|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE-AYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH-HHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH-HHHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            489999999999999998744446777655 4443222 11111211000000000      000011235777788899


Q ss_pred             EEEEcCCCCh
Q 016162          239 VISLHPVLDK  248 (394)
Q Consensus       239 iV~l~lPlt~  248 (394)
                      +|+=|.|.-.
T Consensus        82 vViEcTG~f~   91 (172)
T d2czca2          82 IIVDATPGGI   91 (172)
T ss_dssp             EEEECCSTTH
T ss_pred             EEEECCCCCC
Confidence            9999988443

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.06  E-value=0.0029  Score=53.62  Aligned_cols=81  Identities=20%  Similarity=0.178  Sum_probs=44.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEc-CchhhHHHHHHHhhhhhhhhcCCCC-c------cccccCCHHHHhccc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQP-V------TWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l~ell~~a  237 (394)
                      ++|||-|||+||+.+.|.+...-+++|.+.+ +.+..... ..-.|+.... .+... .      ......+..++++++
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~-~l~~~~~~~~-~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEAR-MALKKGYDLY-VAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHH-HHHHTTCCEE-ESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHH-HHHhcCCceE-ecccccceeecccCcccCCChhHhhcCC
Confidence            5899999999999999987444457777554 43322111 1111110000 00000 0      000112566778899


Q ss_pred             CEEEEcCCCCh
Q 016162          238 DVISLHPVLDK  248 (394)
Q Consensus       238 DiV~l~lPlt~  248 (394)
                      |+|+=|.|.-.
T Consensus        80 DvViEcTG~f~   90 (171)
T d1cf2o1          80 DIVIDCTPEGI   90 (171)
T ss_dssp             SEEEECCSTTH
T ss_pred             CEEEEccCCCC
Confidence            99999988543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.90  E-value=0.0077  Score=50.36  Aligned_cols=67  Identities=21%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      ++++|.|||.|..|++++..| ...|+ +|.+++|+.++. +...+.+       +..     ...+..  ..++|+|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL-~~~g~~~I~I~nR~~~ka-~~L~~~~-------~~~-----~~~~~~--~~~~DliIN   79 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALY-------GYA-----YINSLE--NQQADILVN   79 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHH-------TCE-----EESCCT--TCCCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEecccHHHH-HHHHHhh-------hhh-----hhhccc--ccchhhhee
Confidence            688999999999999999987 67887 799999988642 2221111       110     111111  357899999


Q ss_pred             cCCC
Q 016162          243 HPVL  246 (394)
Q Consensus       243 ~lPl  246 (394)
                      |+|.
T Consensus        80 aTpi   83 (167)
T d1npya1          80 VTSI   83 (167)
T ss_dssp             CSST
T ss_pred             cccc
Confidence            9983

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.018  Score=48.29  Aligned_cols=79  Identities=14%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             CCeEEEEecChHHHHHHH--HHHh--cC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          165 GQTVGVIGAGRIGSAYAR--MMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~--~la~--~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +.||+|||.|++|...+-  .+++  .+ +-++..+|...........+ . .................+.+|.++.||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~-~-~~~~~~~~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI-A-KKYVEEVGADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH-H-HHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH-H-HHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence            468999999999976432  1222  33 45999999987542211111 0 0011111222333445789999999999


Q ss_pred             EEEcCC
Q 016162          240 ISLHPV  245 (394)
Q Consensus       240 V~l~lP  245 (394)
                      |+++.-
T Consensus        80 Vv~~~~   85 (171)
T d1obba1          80 VINTAM   85 (171)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            998754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.84  E-value=0.0066  Score=54.60  Aligned_cols=121  Identities=14%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEc--------Cchh--hHHHHHHHhhhhhhhhcCCCC-----cccc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTAYGQFLKANGEQP-----VTWK  225 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d--------~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~  225 (394)
                      .+|.|+|+.|=|+|++|+.+|+.| ...|++|++.+        +..-  ..+.++..+...  ...+...     ... 
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L-~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-  107 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKL-AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA--SGRNKVQDYADKFGV-  107 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHH-HHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHH--HCCCCTHHHHHHHTC-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhh--hcCcchhhhhhhcCc-
Confidence            479999999999999999999998 78999998653        2211  111111110000  0000000     000 


Q ss_pred             ccCCHHHH-hcccCEEEEcCCCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 016162          226 RASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQNPM  291 (394)
Q Consensus       226 ~~~~l~el-l~~aDiV~l~lPlt~~t~~li~~~~l~~mk~-ga-ilIN~aRG~~vde~aL~~aL~~g~l  291 (394)
                      ...+.+++ -..||+++-|     .+.+.|+++....++. ++ +++-.+.+++.++ +.-..|+++.+
T Consensus       108 ~~~~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI  170 (255)
T d1bgva1         108 QFFPGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNM  170 (255)
T ss_dssp             EEEETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTC
T ss_pred             eeechhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCC
Confidence            00111222 2568998755     3467788877776653 33 7777888776554 33334555433

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.75  E-value=0.013  Score=48.81  Aligned_cols=75  Identities=13%  Similarity=0.208  Sum_probs=45.5

Q ss_pred             CeEEEEecChHHHHHHHH-HHhc---C-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          166 QTVGVIGAGRIGSAYARM-MVEG---F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~-la~~---~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .||.|||.|++|...+-. +++.   + +-++..+|....+. +...+ ..+..-   ..........+.++.++.||+|
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~-~~~~d-~~~~~~---~~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQ-KIVVD-FVKRLV---KDRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHH-HHHHH-HHHHHH---TTSSEEEECSSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHH-HHHHH-HHHhhh---ccCceEEEecCcccccCCCCEE
Confidence            379999999999776632 2121   2 35899999987643 22111 111111   1112222346788999999999


Q ss_pred             EEcCC
Q 016162          241 SLHPV  245 (394)
Q Consensus       241 ~l~lP  245 (394)
                      +++.-
T Consensus        76 Vita~   80 (162)
T d1up7a1          76 IFQFR   80 (162)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            99875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.66  E-value=0.017  Score=47.97  Aligned_cols=95  Identities=15%  Similarity=0.192  Sum_probs=59.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-----cc
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (394)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++..+. + +       ++..|..........+.++..+     ..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a-~~~g~~~vv~~~~~~~k~-~-~-------~~~~ga~~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEKL-K-L-------AERLGADHVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHHH-H-H-------HHHTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCCChHHHHHHHHH-HhhcCcccccccchhHHH-H-H-------HhhcccceeecCcccHHHHHHHhhCCCCc
Confidence            478999999999999999985 67775 778888887542 1 1       1222322211111122343333     37


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      |+|+.++.. +.+.    +..+..++++..++.++-
T Consensus       102 d~vid~~g~-~~~~----~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         102 NVAMDFVGS-QATV----DYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEEEESSCC-HHHH----HHGGGGEEEEEEEEECCC
T ss_pred             eEEEEecCc-chHH----HHHHHHHhCCCEEEEEeC
Confidence            888888862 2221    445677888888888753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.60  E-value=0.018  Score=47.08  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=27.4

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCC--cEEEEEcCchh
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQA  200 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G--~~V~~~d~~~~  200 (394)
                      .||+||| .|.+|+.+|..+ ...|  -++..+|....
T Consensus         1 MKV~IiGA~G~VG~~~a~~l-~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLL-AKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHH-HhCCcccccccccchhh
Confidence            4799999 599999999887 4445  38999998753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.021  Score=46.52  Aligned_cols=76  Identities=8%  Similarity=0.008  Sum_probs=46.8

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH---HHH-hcccCEEEE
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREADVISL  242 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDiV~l  242 (394)
                      .+-|+|+|.+|+.+++.| ...|.+|++.|..+....+...+.     ...+.. .......+.   +++ +.+||.|++
T Consensus         5 HiII~G~g~~g~~l~~~L-~~~~~~v~vId~d~~~~~~~~~~~-----~~~~~~-vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           5 HFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQR-----LGDNAD-VIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHH-----HCTTCE-EEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCEEEEeccchhHHHHHHHh-----hcCCcE-EEEccCcchHHHHHhccccCCEEEE
Confidence            589999999999999998 688999999987765322211111     111111 111112232   222 678999999


Q ss_pred             cCCCChh
Q 016162          243 HPVLDKT  249 (394)
Q Consensus       243 ~lPlt~~  249 (394)
                      +++.+..
T Consensus        78 ~~~~d~~   84 (153)
T d1id1a_          78 LSDNDAD   84 (153)
T ss_dssp             CSSCHHH
T ss_pred             ccccHHH
Confidence            9985433

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.49  E-value=0.021  Score=46.93  Aligned_cols=106  Identities=15%  Similarity=0.205  Sum_probs=58.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ..||+|||.|.+|+.+|..++..-=.++..||...........+ ..+.....+. ...... .+..+.++.||+|+++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~D-l~~~~~~~~~-~~~v~~-~~~~~~~~~advvvita   79 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALD-TSHTNVMAYS-NCKVSG-SNTYDDLAGADVVIVTA   79 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHH-HHTHHHHHTC-CCCEEE-ECCGGGGTTCSEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecc-hhhhccccCC-CcEEEe-cccccccCCCcEEEEec
Confidence            35899999999999999876432213899999876442221111 1000000011 111111 23345679999999886


Q ss_pred             CCC--hh-h-----h-hcc--cHH-------HHhcCCCCcEEEEcCC
Q 016162          245 VLD--KT-T-----Y-HLI--NKE-------RLATMKKEAILVNCSR  273 (394)
Q Consensus       245 Plt--~~-t-----~-~li--~~~-------~l~~mk~gailIN~aR  273 (394)
                      -..  +. +     + .++  |.+       .+....|++++++++.
T Consensus        80 g~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN  126 (150)
T d1t2da1          80 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  126 (150)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             ccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            522  21 1     1 111  221       2334458999999876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.38  E-value=0.013  Score=47.87  Aligned_cols=104  Identities=19%  Similarity=0.322  Sum_probs=61.1

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCc--EEEEEcCchhhHHHHHHHhhhhhhhhcCCCC-c-cccccCCHHHHhcccCEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQP-V-TWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~ell~~aDiV  240 (394)
                      .||+||| .|.+|+.+|-.+ ...|.  ++..+|........  .+     +.+..... . ......+..+.++.||+|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l-~~~~~~~elvLiDi~~~~~~a--~D-----l~~~~~~~~~~~~~~~~~~~~~~~~aDiv   72 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLL-KNSPLVSRLTLYDIAHTPGVA--AD-----LSHIETRATVKGYLGPEQLPDCLKGCDVV   72 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHH-HTCTTCSEEEEEESSSHHHHH--HH-----HTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             CeEEEECCCChHHHHHHHHH-HhCCccceEEEEeccccchhh--HH-----HhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence            4899999 599999999887 44343  79999986543111  11     11111111 1 111234667889999999


Q ss_pred             EEcCC--CCh-hhh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 016162          241 SLHPV--LDK-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       241 ~l~lP--lt~-~t~-~li--~~-------~~l~~mk~gailIN~aRG~~vde  279 (394)
                      +++.-  ..+ +++ .++  |.       +.+....|.++++.++.  ++|.
T Consensus        73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~  122 (144)
T d1mlda1          73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNS  122 (144)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHH
T ss_pred             EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhh
Confidence            98743  333 121 111  11       22333478899999865  5554

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.35  E-value=0.098  Score=43.11  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh---HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      +|.|+||+++|=|+ +..+.+..+ ..||+++....|..-.   ......+.+.   ..   .........++++.+..+
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNA---AE---SGGSFELLHDPVKAVKDA   73 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHH---HH---HTCEEEEESCHHHHTTTC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEecccccCCChHHHHHHHHhh---hc---ccceEEEecCHHHHhhhc
Confidence            47899999999643 556777775 6899999999874211   1111111110   00   001123456899999999


Q ss_pred             CEEEEcCCCC------hh------hhhcccHHHHhcCCCCcEEEEcC
Q 016162          238 DVISLHPVLD------KT------TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       238 DiV~l~lPlt------~~------t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+|..-.=..      .+      ....++.+.++.+|++++|.-+.
T Consensus        74 dviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          74 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             cEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            9997643111      11      11356788888888888887763

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.34  E-value=0.02  Score=47.65  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh------cc
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (394)
                      .|.+|.|.|. |.+|...++.+ +.+|++|++.+++.++.  ++       ++..|..........++.+.+      ..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla-~~~g~~vi~~~~~~~~~--~~-------l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR--EM-------LSRLGVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH--HH-------HHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCCcccccchhh-ccccccceeeecccccc--cc-------cccccccccccCCccCHHHHHHHHhCCCC
Confidence            4789999885 99999999985 89999999988876542  22       223343322222223454433      34


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-++.  .++   + ...++.++++..+|.++.
T Consensus        95 ~d~v~d~~g--~~~---~-~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          95 VDVVLNSLA--GEA---I-QRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             EEEEEECCC--THH---H-HHHHHTEEEEEEEEECSC
T ss_pred             EEEEEeccc--chH---H-HHHHHHhcCCCEEEEEcc
Confidence            788888876  222   1 456788899999999864

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.30  E-value=0.016  Score=45.64  Aligned_cols=100  Identities=13%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             CeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      |+|.|||.    |..|..+.+.| +.+|.+|+.++|....                 ..  +...+.+++|+=..-|+++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L-~~~g~~V~pVnP~~~~-----------------i~--G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDE-----------------IE--GLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-----------------ET--TEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHH-HHCCCEEEEEcccccc-----------------cc--CccccccchhccccceEEE
Confidence            68999994    68899999998 7899999999886532                 11  1234568888878889999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~  292 (394)
                      +++| ...+..++. +.. .+...++++..   +..++ ++.+.+++..+.
T Consensus        62 i~vp-~~~~~~~l~-~~~-~~g~k~v~~~~---g~~~~-~~~~~a~~~gi~  105 (116)
T d1y81a1          62 FVVP-PKVGLQVAK-EAV-EAGFKKLWFQP---GAESE-EIRRFLEKAGVE  105 (116)
T ss_dssp             ECSC-HHHHHHHHH-HHH-HTTCCEEEECT---TSCCH-HHHHHHHHHTCE
T ss_pred             EEeC-HHHHHHHHH-HHH-hcCCceEEecc---chhhH-HHHHHHHHcCCE
Confidence            9999 233445543 333 24455677654   33444 566666655443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.29  E-value=0.011  Score=46.87  Aligned_cols=91  Identities=13%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH----hcccCEEE
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  241 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~  241 (394)
                      |.+-|+|+|.+|+.+++.| ++.+.  .+.+..+.....         +...|.... .....+.+-+    +.+|+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L-~~~~i--~vi~~d~~~~~~---------~~~~~~~~i-~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL-RGSEV--FVLAEDENVRKK---------VLRSGANFV-HGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS-CGGGE--EEEESCTTHHHH---------HHHTTCEEE-ESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-cCCCC--EEEEcchHHHHH---------HHhcCcccc-ccccCCHHHHHHhhhhcCcEEE
Confidence            4688999999999999997 66664  455555443211         111121111 1112333322    67899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCc-EEEEc
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC  271 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~ga-ilIN~  271 (394)
                      ++++.+..+  ++-......+.|.. +++-+
T Consensus        68 ~~~~~d~~n--~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          68 VNLESDSET--IHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             ECCSSHHHH--HHHHHHHHHHCSSSCEEEEC
T ss_pred             Eeccchhhh--HHHHHHHHHHCCCceEEEEE
Confidence            998854433  33333444455553 44443

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=95.25  E-value=0.037  Score=44.53  Aligned_cols=102  Identities=9%  Similarity=0.109  Sum_probs=69.5

Q ss_pred             CCCeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      +-|+|+|||.    ++.|..+.+.| +.+|++++.+.+++...                 .-.+...+.++.++-..-|+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L-~~~g~~~~~v~~~~~~~-----------------~i~g~~~~~~l~~i~~~iD~   73 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHH-hcCCCCceEEEeccccc-----------------eeeceecccchhhccCCCce
Confidence            4579999997    78999999998 79999999998865321                 00112345688888778899


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (394)
                      +++++| ...+..++.+ .. .+...++++..+   ..++++...|.+.|
T Consensus        74 v~v~~p-~~~v~~~v~~-~~-~~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          74 LDVFRP-PSALMDHLPE-VL-ALRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             EEECSC-HHHHTTTHHH-HH-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             EEEecc-HHHHHHHHHH-HH-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            999999 3344555533 22 235567777653   45666555555554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.03  Score=45.67  Aligned_cols=106  Identities=22%  Similarity=0.212  Sum_probs=60.5

Q ss_pred             CeEEEEec-ChHHHHHHHHHHh--cCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCC-ccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+|+|||. |.+|+.+|-.|+.  .+.-++..+|..... .....+     +.+..... .......+..+.++.||+|+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~-~g~a~D-----l~h~~~~~~~~~~~~~~~~~~~~~aDvvv   74 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVD-----LSHIPTAVKIKGFSGEDATPALEGADVVL   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTH-HHHHHH-----HHTSCSSCEEEEECSSCCHHHHTTCSEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccc-hhHHHH-----HHCCccccCCcEEEcCCCccccCCCCEEE
Confidence            48999995 9999999987643  467799999975432 111112     11211111 11111122345689999999


Q ss_pred             EcC--CCChh-hh-hcc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 016162          242 LHP--VLDKT-TY-HLI--N-------KERLATMKKEAILVNCSRGPVIDE  279 (394)
Q Consensus       242 l~l--Plt~~-t~-~li--~-------~~~l~~mk~gailIN~aRG~~vde  279 (394)
                      ++.  |..+. ++ .++  |       .+.+....|.+++|.++.  ++|.
T Consensus        75 itaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~  123 (145)
T d2cmda1          75 ISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNT  123 (145)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHH
T ss_pred             ECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchH
Confidence            985  33332 11 122  1       123444568889999866  4443

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.042  Score=45.65  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             ccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      +|.|+||+++|=|+ +-.+.+..+ ..||++++...|.......+..+.........+   .......++++.+..+|+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~-~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~---~~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHH-HHcCCEEEEEeccccCCchHHHHHHHHHHhccC---CEEEEEcCHHHHHhhhhhe
Confidence            47899999999763 333444443 468999999887532211111110000111112   1123457899999999999


Q ss_pred             EEcCCCChhh------------hhcccHHHHhcCCCCcEEEEcC
Q 016162          241 SLHPVLDKTT------------YHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       241 ~l~lPlt~~t------------~~li~~~~l~~mk~gailIN~a  272 (394)
                      ..........            ...++.+.+..++++++|.-+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          77 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            8765433221            1235677778888888887763

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.16  E-value=0.04  Score=49.02  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +|+||++.|.| .+.||+++|++| ..-|++|+..+|+...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~i~~r~~~~   42 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEEL-AGLGARVYTCSRNEKE   42 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            68999999998 667999999998 5889999999998754

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.15  E-value=0.14  Score=41.87  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             cCCCeEEEEec--ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          163 LKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       163 l~gktvGIIGl--G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      |+|++|+++|=  .++-.+....+ ..||+++....|..-.................+   ..+....++++.++.+|+|
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~-~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~---~~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEecchhhhhhhhHHHHHHHHHhhcC---CceEEEecHHHhhhhhhhe
Confidence            67999999994  57999999886 689999999887532110100000000001111   1223456899999999999


Q ss_pred             EEcCCCChh------------hhh-cccHHHHhcCCCCcEEEEcC
Q 016162          241 SLHPVLDKT------------TYH-LINKERLATMKKEAILVNCS  272 (394)
Q Consensus       241 ~l~lPlt~~------------t~~-li~~~~l~~mk~gailIN~a  272 (394)
                      ..-.-....            ... ..+......+|++++|.-+.
T Consensus        77 yt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          77 YTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             EECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             eccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            765532211            011 22233344567777777663

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.02  Score=50.70  Aligned_cols=40  Identities=28%  Similarity=0.450  Sum_probs=35.4

Q ss_pred             cccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ++|.||++.|.|.+. ||+++|+.| ...|++|+..|++..+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~l-a~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEF-AKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            469999999998876 999999998 5889999999998754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.09  E-value=0.11  Score=43.10  Aligned_cols=94  Identities=16%  Similarity=0.065  Sum_probs=58.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccc-cccC-CHHHHh-----c
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRAS-SMDEVL-----R  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~l~ell-----~  235 (394)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+. + ..       ++.|...... ...+ ..+...     .
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r~-~-~a-------~~~Ga~~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKF-P-KA-------KALGATDCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH-H-HH-------HHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCChHHHHHHHHH-HHhCCceeeeeccchHHH-H-HH-------HHhCCCcccCCccchhhhhhhHhhhhcC
Confidence            578999999999999999985 89998 688889887653 1 11       2223222111 1111 222222     3


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCC-cEEEEcC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~g-ailIN~a  272 (394)
                      ..|+++-|+. ++++    -...+..++++ ..++-++
T Consensus        98 G~d~vie~~G-~~~~----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          98 GVDYSLDCAG-TAQT----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             CBSEEEESSC-CHHH----HHHHHHTBCTTTCEEEECC
T ss_pred             CCcEEEEecc-cchH----HHHHHHHhhcCCeEEEecC
Confidence            4789988886 3333    24556667775 5666664

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.93  E-value=0.056  Score=44.21  Aligned_cols=100  Identities=22%  Similarity=0.319  Sum_probs=61.1

Q ss_pred             cCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       163 l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      |.|+||++||=   |++..+.+..+ ..||+++..+-+..........      ..   ..+..+....++++.++.+|+
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l-~~~g~~~~~~~p~~~~~~~~~~------~~---~~~~~~~~~~d~~eai~~aDv   70 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI------LD---ELNYPVKEVENPFEVINEVDV   70 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH------HT---TCCSCEEEESCGGGTGGGCSE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH-HHcCCeeEEEecccccccchhh------cc---cCCCeEEEEeCHHHHhhcCCe
Confidence            57999999996   55999999986 6899986655443221111100      11   112233445789999999999


Q ss_pred             EEEcCCCChh-----------hhhcccHHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt~~-----------t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |...--....           ....++.+.++.++++++|.-+.
T Consensus        71 vy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          71 LYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             EEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             EEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence            9653211110           11235677777777777777663

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.89  E-value=0.061  Score=48.26  Aligned_cols=40  Identities=10%  Similarity=0.223  Sum_probs=35.9

Q ss_pred             cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+|+||++.|.| .|.||+++|+.| ...|++|++.||+...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~l-a~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLL-SSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            589999999997 789999999998 5889999999998754

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.87  E-value=0.024  Score=47.14  Aligned_cols=101  Identities=24%  Similarity=0.214  Sum_probs=54.1

Q ss_pred             eEEEEecChHHHHHHHHHHhcC----CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEE
Q 016162          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (394)
                      +|||||+|.+|+..++.+ +..    ...+...+.....                  .........+++|++.  +.|+|
T Consensus         9 kv~iIG~G~~g~~h~~~l-~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~e~l~~~~iD~V   69 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRREL------------------GSLDEVRQISLEDALRSQEIDVA   69 (172)
T ss_dssp             EEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSCC------------------CEETTEEBCCHHHHHHCSSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHH-HhCCCCcEEEEEeccchHHH------------------HHhhccCcCCHHHHHhCCCcchh
Confidence            799999999999988876 332    2233332221110                  0001112458999986  56889


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP  290 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~-aRG~~vde~aL~~aL~~g~  290 (394)
                      ++++|  +.+..-+-...++.=  -.+++.= ---.+-+.+.|.++.++.+
T Consensus        70 ~I~tp--~~~H~~~~~~al~~g--k~V~~EKP~a~~~~e~~~l~~~a~~~~  116 (172)
T d1lc0a1          70 YICSE--SSSHEDYIRQFLQAG--KHVLVEYPMTLSFAAAQELWELAAQKG  116 (172)
T ss_dssp             EECSC--GGGHHHHHHHHHHTT--CEEEEESCSCSCHHHHHHHHHHHHHTT
T ss_pred             hhccc--ccccccccccccccc--hhhhcCCCccccHHHHHHHHHHHHHcC
Confidence            99999  333322223333321  1255542 1123455566666555443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.81  E-value=0.024  Score=46.14  Aligned_cols=104  Identities=15%  Similarity=0.203  Sum_probs=57.1

Q ss_pred             CeEEEEe-cChHHHHHHHHHHh-cCCcEEEEEcCchhh-HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~-~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .||+||| .|.+|+.+|-.++. ++.-++..||..... ..+.....+.+.. ... ..... ...+.+ .+..||+|++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~-~~~-~~~~i-~~~~~~-~~~~aDiVvi   76 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI-AYD-SNTRV-RQGGYE-DTAGSDVVVI   76 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH-TTT-CCCEE-EECCGG-GGTTCSEEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc-ccc-CCceE-eeCCHH-HhhhcCEEEE
Confidence            4899999 69999999987643 344489999964322 1111111111100 001 11111 123444 4689999998


Q ss_pred             cC--CCChh-hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016162          243 HP--VLDKT-TY--------HLIN--KERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~l--Plt~~-t~--------~li~--~~~l~~mk~gailIN~aR  273 (394)
                      +.  |..+. ++        .++.  .+.+....|+++++.++.
T Consensus        77 taG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          77 TAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             ecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            74  33332 21        1121  234555678899998865

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.79  E-value=0.073  Score=44.32  Aligned_cols=77  Identities=12%  Similarity=0.163  Sum_probs=46.7

Q ss_pred             CCeEEEEecChHHHHHH--HHHHh--cC-CcEEEEEcCchhhHH--HHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          165 GQTVGVIGAGRIGSAYA--RMMVE--GF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA--~~la~--~~-G~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      ..+|.|||.|.+|...+  ..++.  .+ +-++..+|...+...  ....+.+.    .....+.......+.+|.++.|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~eal~~A   78 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI----REKAPDIEFAATTDPEEAFTDV   78 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHH----HHHCTTSEEEEESCHHHHHSSC
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHH----HHhCCCcceEecCChhhccCCC
Confidence            34899999999886532  33321  22 248999999876522  12222111    1112223333456899999999


Q ss_pred             CEEEEcCC
Q 016162          238 DVISLHPV  245 (394)
Q Consensus       238 DiV~l~lP  245 (394)
                      |+|+++.-
T Consensus        79 D~Vvitag   86 (167)
T d1u8xx1          79 DFVMAHIR   86 (167)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999974

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.61  E-value=0.022  Score=47.09  Aligned_cols=94  Identities=16%  Similarity=0.160  Sum_probs=57.2

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HHHh-----c
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL-----R  235 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell-----~  235 (394)
                      .|.+|.|+|. |.+|...++.+ +..| .+|++.+++..+..  +.+       +.|..........++ +++.     .
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~-~~~g~~~V~~~~~~~~~~~--~~~-------~~Ga~~~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVE--AAK-------RAGADYVINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHH--HHH-------HHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEeccccceeeeeecc-cccccccccccccchhhHH--HHH-------HcCCceeeccCCcCHHHHHHHHhhcc
Confidence            4789999995 99999999886 6777 58999998875431  112       222211111111233 3332     2


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ..|+|+-|.. .+.+.    +..+..++++..++.++
T Consensus        97 ~~d~vid~~g-~~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          97 GVDAVIDLNN-SEKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CEEEEEESCC-CHHHH----TTGGGGEEEEEEEEECC
T ss_pred             cchhhhcccc-cchHH----HhhhhhcccCCEEEEec
Confidence            3788888775 33332    23456678888888774

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.58  E-value=0.11  Score=43.75  Aligned_cols=107  Identities=14%  Similarity=0.174  Sum_probs=65.1

Q ss_pred             ccCCCeEEEEec--ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          162 LLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       162 ~l~gktvGIIGl--G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .|.|.||++||=  -++..+.+..+ ..||+++.+..|..-.-.+...+..-......+   .......++++.++.+|+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~-~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHH-HHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC---CeEEEEeChhhccccccE
Confidence            478999999994  48999999986 689999999988532111111110000011111   123345789999999999


Q ss_pred             EEEcCCCC----hhh---------hhccc-HHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLD----KTT---------YHLIN-KERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt----~~t---------~~li~-~~~l~~mk~gailIN~a  272 (394)
                      |..-.=.+    .+.         ...++ +.....+++++++.-+.
T Consensus        78 Vyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          78 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            97644211    110         11233 34456678999988875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.57  E-value=0.18  Score=43.79  Aligned_cols=178  Identities=13%  Similarity=0.130  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh-
Q 016162          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA-  200 (394)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~-  200 (394)
                      +|--+++-+|+.+|-                     .|+.|++.++.|.|.|.-|-.+|+.+ ...+. +++.+|+.-- 
T Consensus         5 TaaV~LAgll~a~~~---------------------~g~~l~d~riv~~GAGsAg~gia~~l-~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1           5 TAVVVSAAFLNALKL---------------------TEKKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             HHHHHHHHHHHHHHH---------------------HTCCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEEC
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChHHHHHHHHHHH-HHhcccceEeecceeEE
Confidence            455677777777762                     34579999999999999999999988 44455 7999997611 


Q ss_pred             ------hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          201 ------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       201 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                            .....+...+..   ....    .....++.+++..+|++...-     +.+++.++.+..|.+..++.=.|+.
T Consensus        63 ~~~r~~~~~~~~~~~~~~---~~~~----~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNP  130 (222)
T d1vl6a1          63 NENDPETCLNEYHLEIAR---ITNP----ERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANP  130 (222)
T ss_dssp             CTTSGGGCSSHHHHHHHH---TSCT----TCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSS
T ss_pred             EcCcccccccHHHHHHHh---hhcc----hhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCC
Confidence                  111122222211   1010    112357889999999876553     4778888999999999999999986


Q ss_pred             cccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHH----HHHHHHHHHHHHHHHHH
Q 016162          275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKW----TREGMATLAALNVLGKI  344 (394)
Q Consensus       275 ~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~----~~~~~~~~~~~ni~~~l  344 (394)
                      ..--|..  .+-..|+...|.     .-|..  | -+..|+++-|=++-....    --+.|...+++.+-++.
T Consensus       131 t~~~e~~--~a~~~G~ai~At-----Gsp~~--p-~Q~NN~yiFPGiglGal~~~aritd~m~~aAA~alA~~~  194 (222)
T d1vl6a1         131 VPEIDPE--LAREAGAFIVAT-----GRSDH--P-NQVNNLLAFPGIMKGAVEKRSKITKNMLLSAVEAIARSC  194 (222)
T ss_dssp             SCSSCHH--HHHHTTCSEEEE-----SCTTS--S-SBCCGGGTHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTS
T ss_pred             ccchhhh--hheeccceEEec-----CCCCC--C-ccCcceeecchHHHHHHHhccccchHHHHHHHHHHHhcC
Confidence            6544433  345567644333     22321  1 244677777755431111    12455556666666544

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.24  Score=40.09  Aligned_cols=111  Identities=22%  Similarity=0.285  Sum_probs=60.6

Q ss_pred             CeEEEEec-ChHHHHHHHHHHh--cC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~--~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      |+|||||. |.+|+++.++|..  .| -.+++.+..+......         ....+. ........+. +.+..+|+++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~---------~~~~~~-~~~~~~~~~~-~~~~~~DivF   70 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA---------PSFGGT-TGTLQDAFDL-EALKALDIIV   70 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC---------CGGGTC-CCBCEETTCH-HHHHTCSEEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc---------ccccCC-ceeeecccch-hhhhcCcEEE
Confidence            58999997 9999999986533  22 3356656544322100         000011 1111112232 3578999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC---Cc--------ccCHHHHHHHHHcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR---GP--------VIDEVALVEHLKQNP  290 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR---G~--------~vde~aL~~aL~~g~  290 (394)
                      +|+|...  ..-+ ...+.....+.++||.|.   ..        =||.+.|-.++++|.
T Consensus        71 ~a~~~~~--s~~~-~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          71 TCQGGDY--TNEI-YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             ECSCHHH--HHHH-HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             EecCchH--HHHh-hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            9999332  2222 233333344567788773   22        146677878888754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.026  Score=50.12  Aligned_cols=41  Identities=22%  Similarity=0.304  Sum_probs=35.4

Q ss_pred             ccccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       160 g~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      |..|+||++.|.|. +.||+++|++| ...|++|++.|++.+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   42 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAF-VNSGARVVICDKDESG   42 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            45799999999985 78999999998 5789999999998654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.38  E-value=0.028  Score=46.79  Aligned_cols=90  Identities=17%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCH-HH--HhcccCE
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DE--VLREADV  239 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e--ll~~aDi  239 (394)
                      .|++|.|.|. |.+|+...+. ++.+|++|++.+++.++..  +       ++..|.....  .+.+. ++  ....+|+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiql-ak~~G~~vi~~~~~~~~~~--~-------~~~lGa~~~i--~~~~~~~~~~~~~g~D~   94 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQV-ARAMGLRVLAAASRPEKLA--L-------PLALGAEEAA--TYAEVPERAKAWGGLDL   94 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHTTCEEEEEESSGGGSH--H-------HHHTTCSEEE--EGGGHHHHHHHTTSEEE
T ss_pred             CCCEEEEEeccccchhhhhhh-hcccccccccccccccccc--c-------ccccccceee--ehhhhhhhhhccccccc
Confidence            5889999995 9999999998 4899999999998765421  1       1222332211  11221 12  2355888


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      |+-+..  + +   + ...++.++++..++.++
T Consensus        95 v~d~~G--~-~---~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          95 VLEVRG--K-E---V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EEECSC--T-T---H-HHHHTTEEEEEEEEEC-
T ss_pred             cccccc--h-h---H-HHHHHHHhcCCcEEEEe
Confidence            887654  1 1   1 45678888888888875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.27  E-value=0.027  Score=42.71  Aligned_cols=68  Identities=19%  Similarity=0.262  Sum_probs=45.5

Q ss_pred             CCCeEEEEecChHH-HHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          164 KGQTVGVIGAGRIG-SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       164 ~gktvGIIGlG~IG-~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      +.+++=+||.|.+| +++|+.| ...|.+|.++|.........        +.+.|.   ......+ .+.+...|+|+.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~~~~~~--------L~~~Gi---~v~~g~~-~~~i~~~d~vV~   73 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADGVVTQR--------LAQAGA---KIYIGHA-EEHIEGASVVVV   73 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCSHHHHH--------HHHTTC---EEEESCC-GGGGTTCSEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCChhhhH--------HHHCCC---eEEECCc-cccCCCCCEEEE
Confidence            56889999999999 5569987 79999999999876543332        223332   1222122 344678898876


Q ss_pred             cC
Q 016162          243 HP  244 (394)
Q Consensus       243 ~l  244 (394)
                      .-
T Consensus        74 S~   75 (96)
T d1p3da1          74 SS   75 (96)
T ss_dssp             CT
T ss_pred             CC
Confidence            53

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.18  E-value=0.12  Score=42.94  Aligned_cols=39  Identities=23%  Similarity=0.213  Sum_probs=33.8

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  202 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~  202 (394)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++.++.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~a-k~~G~~~Vi~vd~~~~kl   67 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGC-KSAGASRIIGIDLNKDKF   67 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceEEEecCcHHHH
Confidence            3588999999999999999985 78985 899999988763

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.036  Score=48.58  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             cccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ++|+||++.|.|.+. ||+++|++| ...|++|++.|++...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERL-VGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChHH
Confidence            469999999997665 999999998 5889999999987654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.053  Score=48.25  Aligned_cols=40  Identities=25%  Similarity=0.375  Sum_probs=34.8

Q ss_pred             cccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ..|+||++.|.|.+. ||+++|+.| ...|++|++.+|+.+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~l-a~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHL-AKMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            459999999998766 999999998 4789999999998754

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.97  E-value=0.086  Score=42.98  Aligned_cols=75  Identities=17%  Similarity=0.353  Sum_probs=51.9

Q ss_pred             cCCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       163 l~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      |.|+||+|||=   +++..+.+..+ ..||+++....|......+....    .+...+   .......++++.+..+|+
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~-~~~g~~~~~~~P~~~~~~~~~~~----~~~~~~---~~~~~~~d~~~av~~aDv   73 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVE----ELREKG---MKVVETTTLEDVIGKLDV   73 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHH----HHHHTT---CCEEEESCTHHHHTTCSE
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHH-HhcCCcEEEEccchhhcchHHHH----HHHhhc---ccceeecCHHHhhccCcE
Confidence            78999999998   68999999986 78999999998764322221111    111111   122335689999999999


Q ss_pred             EEEcCC
Q 016162          240 ISLHPV  245 (394)
Q Consensus       240 V~l~lP  245 (394)
                      |....-
T Consensus        74 vy~~~~   79 (157)
T d1ml4a2          74 LYVTRI   79 (157)
T ss_dssp             EEECCC
T ss_pred             EEeecc
Confidence            877654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.94  E-value=0.045  Score=48.61  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +|+||++.|.|-+ .||+++|++| ...|++|+..|++.+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQA-VAAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            6899999999876 5999999998 4789999999998754

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.94  E-value=0.068  Score=41.16  Aligned_cols=64  Identities=11%  Similarity=0.126  Sum_probs=46.2

Q ss_pred             CCCeEEEEec----------ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH
Q 016162          164 KGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (394)
Q Consensus       164 ~gktvGIIGl----------G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (394)
                      ..|+|||+|+          ..-.-.+.+.| ...|++|.+|||......                .........++++.
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L-~~~g~~v~iyDP~v~~~~----------------~~~~~~~~~~l~~~   76 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKLE----------------SEDQSVLVNDLENF   76 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCCC----------------TTCCSEECCCHHHH
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHH-hccccceeeecCCcChhH----------------hccCCEEEeCHHHH
Confidence            3469999998          46677889987 788999999999875310                00111234689999


Q ss_pred             hcccCEEEEcC
Q 016162          234 LREADVISLHP  244 (394)
Q Consensus       234 l~~aDiV~l~l  244 (394)
                      +..||+|++..
T Consensus        77 ~~~sDiII~~~   87 (108)
T d1dlja3          77 KKQANIIVTNR   87 (108)
T ss_dssp             HHHCSEEECSS
T ss_pred             HhhCCEEEEcC
Confidence            99999877544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.83  E-value=0.22  Score=41.09  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=32.9

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      -.|.+|.|+|.|.+|...++.+ +..|+ +|++.|++..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~a-k~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceeeccCChHHH
Confidence            4588999999999999999985 78886 89999998765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.82  E-value=0.068  Score=44.54  Aligned_cols=95  Identities=20%  Similarity=0.148  Sum_probs=63.0

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccc-cCCHHHHh-----cc
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVL-----RE  236 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell-----~~  236 (394)
                      .|.+|.|.|. |.+|+..++. ++..|++|++.+++.++.  ++       ++..|........ ....+.++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiql-ak~~Ga~vi~~~~~~~~~--~~-------~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKI--AY-------LKQIGFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEESSHHHH--HH-------HHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHH-HHccCCEEEEeCCCHHHH--HH-------HHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence            5889999988 6688888887 589999999999876542  11       2233332221111 12233333     34


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  274 (394)
                      .|+|+-|+.  .++.    ...++.++++..++.++..
T Consensus        99 vd~v~D~vG--~~~~----~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          99 YDCYFDNVG--GEFL----NTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             EEEEEESSC--HHHH----HHHGGGEEEEEEEEECCCG
T ss_pred             CceeEEecC--chhh----hhhhhhccCCCeEEeecce
Confidence            899999885  3322    5678889999999998653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.78  E-value=0.065  Score=45.58  Aligned_cols=37  Identities=38%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      .|.+|.|+|.|.+|...+..+ +.+|+ +|++.|++..+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~a-k~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-Hhhcccceeeecccchh
Confidence            478999999999998888874 77777 89999998754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.66  E-value=0.038  Score=43.14  Aligned_cols=34  Identities=12%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .+++.|||.|.||-++|..+ ..+|.+|+.+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVI-KRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHH-Hhccccceeeehhc
Confidence            47999999999999999998 79999999998754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.66  E-value=0.1  Score=41.99  Aligned_cols=99  Identities=10%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             CCCeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       164 ~gktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      .-|+|.|||.    |+.|..+++.| +.+|.+|+.++|....                 ..  +...+.++.++-..-|+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L-~~~g~~v~pVnP~~~~-----------------i~--G~~~~~sl~dlp~~iD~   77 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-----------------VL--GRKCYPSVLDIPDKIEV   77 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-----------------ET--TEECBSSGGGCSSCCSE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHH-HHCCCEEEEECCcccc-----------------cC--CCcccccccccCccceE
Confidence            4679999996    57999999998 7899999999986532                 11  12235788888888999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016162          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (394)
Q Consensus       240 V~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (394)
                      +++++|. ..+..++ ++..+ ....++++..+   ..+++..-.+-+.
T Consensus        78 v~i~vp~-~~~~~~~-~e~~~-~g~k~v~~~~G---~~~ee~~~~a~~~  120 (139)
T d2d59a1          78 VDLFVKP-KLTMEYV-EQAIK-KGAKVVWFQYN---TYNREASKKADEA  120 (139)
T ss_dssp             EEECSCH-HHHHHHH-HHHHH-HTCSEEEECTT---CCCHHHHHHHHHT
T ss_pred             EEEEeCH-HHHHHHH-HHHHH-hCCCEEEEecc---ccCHHHHHHHHHC
Confidence            9999992 2333444 33332 34556777654   3566544444443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.60  E-value=0.035  Score=43.62  Aligned_cols=33  Identities=15%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      +++.|||.|.||-++|..+ ..+|++|..+++..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l-~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVY-SRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHH-HhhCcceeEEEecc
Confidence            6999999999999999998 69999999998755

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.54  E-value=0.054  Score=43.16  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             ccCCCeEEEEec----ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl----G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      -++-++|.|||.    |..|..+.+.|..++..+|+.++|....                 ..  +...+.|++|+=..-
T Consensus         5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-----------------i~--G~~~y~sl~dlp~~v   65 (129)
T d2csua1           5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-----------------VQ--GVKAYKSVKDIPDEI   65 (129)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-----------------ET--TEECBSSTTSCSSCC
T ss_pred             hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-----------------cC--CeEeecchhhcCCCC
Confidence            356789999997    8999999999843344699999987532                 11  123457888887889


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-----cCHHHHHHHHHcCCc
Q 016162          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----IDEVALVEHLKQNPM  291 (394)
Q Consensus       238 DiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~-----vde~aL~~aL~~g~l  291 (394)
                      |++++++| .+.+..++ ++..+.=-++++++..+-++.     ..+++|.+..++..+
T Consensus        66 Dlvvi~vp-~~~~~~~~-~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          66 DLAIIVVP-KRFVKDTL-IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             SEEEECSC-HHHHHHHH-HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEecC-hHHhHHHH-HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            99999999 34455555 333322233455554433332     223455555555433

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.45  E-value=0.083  Score=46.39  Aligned_cols=39  Identities=23%  Similarity=0.201  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +|+||++.|.|. +.||+++|++| ...|++|+..+++...
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l-~~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETL-AARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999975 56999999998 5789999999998654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.41  E-value=0.081  Score=46.73  Aligned_cols=36  Identities=22%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             cCCCeEEEEec-C--hHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          163 LKGQTVGVIGA-G--RIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       163 l~gktvGIIGl-G--~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      |+||++.|.|. |  .||.++|+.| ...|++|+..+++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~l-a~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHH-HHCCCEEEEEeCCH
Confidence            88999999996 4  4999999998 58899999999874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.38  E-value=0.063  Score=47.24  Aligned_cols=39  Identities=18%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             cccCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       161 ~~l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+|+||++.|.|.+   .||+++|++| ..-|++|++.++...
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~l-a~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKL-KEAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHH-HHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEeCcHH
Confidence            47999999999975   4999999998 477999998888753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.36  E-value=0.076  Score=47.20  Aligned_cols=45  Identities=20%  Similarity=0.148  Sum_probs=37.0

Q ss_pred             cccccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHH
Q 016162          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (394)
Q Consensus       159 ~g~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~  204 (394)
                      ...+|+||++.|.| -+.||+++|+.| ...|++|++.+++.....+
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~l-a~~Ga~Vvi~~~~~~~~~~   57 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMEL-GRRGCKVIVNYANSTESAE   57 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCchHHHH
Confidence            34579999999998 789999999998 5789999998887655433

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.36  E-value=0.04  Score=42.69  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+++.|||.|.||-++|..+ ..+|.+|..+.+...
T Consensus        22 p~~v~IiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAY-ANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeee-cccccEEEEEEecce
Confidence            37999999999999999997 799999999987653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.09  Score=46.14  Aligned_cols=39  Identities=28%  Similarity=0.368  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|.+ .||+++|++| ...|++|++.||+...
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQAL-HATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            5899999999765 5999999998 5789999999998654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.33  E-value=0.11  Score=45.19  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=44.1

Q ss_pred             CCCeEEEEecChHHHHHH----HHHHh-cCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--
Q 016162          164 KGQTVGVIGAGRIGSAYA----RMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA----~~la~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (394)
                      +-.+|||||+|.+|+.++    ..+.. .-+.+++ ++|++.... +.+.+.|       +...  ...+.++++++.  
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~-~~~~~~~-------~~~~--~~~~~~~~~l~~~~   84 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSS-LQTIEQL-------QLKH--ATGFDSLESFAQYK   84 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHH-HHHHHHT-------TCTT--CEEESCHHHHHHCT
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHH-HHHHHhc-------cccc--ceeecchhhccccc
Confidence            445899999998654443    33322 2367877 588877543 2222332       2211  123579999985  


Q ss_pred             ccCEEEEcCC
Q 016162          236 EADVISLHPV  245 (394)
Q Consensus       236 ~aDiV~l~lP  245 (394)
                      +-|+|++|+|
T Consensus        85 ~iD~V~i~tp   94 (237)
T d2nvwa1          85 DIDMIVVSVK   94 (237)
T ss_dssp             TCSEEEECSC
T ss_pred             ccceeeccCC
Confidence            4779999998

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.088  Score=43.41  Aligned_cols=37  Identities=11%  Similarity=-0.014  Sum_probs=30.8

Q ss_pred             CCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|.+|.|.|.| .+|..+.+. ++.+|++|++.+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iql-ak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQW-AKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHH-HHHhCCeEeecccchHH
Confidence            47899999555 499988887 58999999999998765

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.29  E-value=0.093  Score=46.00  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +|+||++.|.|-+ .||+++|++| ...|++|++.+|+.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKAL-HASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            5899999999865 6999999998 5889999999998654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.23  E-value=0.054  Score=48.09  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|-+ .||+++|+.| ...|++|+..|++.+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRL-AEEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            5899999999875 5999999998 5889999999998654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.14  E-value=0.12  Score=45.69  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=33.2

Q ss_pred             cCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      |+||++.|.|-+ .||+++|+.| ..-|++|++.|++.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRL-AAEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            789999999876 5999999998 5889999999998754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.13  E-value=0.13  Score=38.19  Aligned_cols=66  Identities=18%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             CeEEEEecChHHH-HHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcC
Q 016162          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (394)
Q Consensus       166 ktvGIIGlG~IG~-~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l  244 (394)
                      ++|=+||.|.+|- .+|+.| +..|+.|.++|+...+..+.        |+..|..   +..-.+. +.+..+|+|+..-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~~--------L~~~Gi~---i~~gh~~-~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTAY--------LRKLGIP---IFVPHSA-DNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH--------HHHTTCC---EESSCCT-TSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHHH--------HHHCCCe---EEeeecc-cccCCCCEEEEec
Confidence            5788999999998 588886 79999999999886554332        3444431   1111122 3357789887653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.05  Score=42.19  Aligned_cols=33  Identities=24%  Similarity=0.612  Sum_probs=30.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      +++.|||-|.+|-++|..+ ..+|.+|..+++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l-~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVI-NGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHh-hccccEEEEEeecc
Confidence            6899999999999999997 79999999998865

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.09  E-value=0.09  Score=46.26  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|. +.||+++|++| ...|++|++.|++...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAM-VAEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999987 55999999998 5889999999998754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.07  E-value=0.078  Score=46.63  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhhH
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATR  202 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~~  202 (394)
                      .|+||++.|.|-+ .||+++|+.| ..-|++|++.|++....
T Consensus         2 rL~gKvalVTGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~~   42 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERF-AVEGADIAIADLVPAPE   42 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCchHH
Confidence            5899999999875 5999999998 58899999999876543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.05  E-value=0.091  Score=46.54  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +|.||++.|.|-+ .||+++|++| ..-|++|++.||+...
T Consensus         5 ~L~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEEL-ASLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            6899999999876 5999999998 4789999999997654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.92  E-value=0.063  Score=47.08  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|.+. ||+++|+.| ...|++|++.+|+...
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLF-AREGASLVAVDREERL   41 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            38899999998776 999999998 5889999999998754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.84  E-value=0.088  Score=44.14  Aligned_cols=95  Identities=20%  Similarity=0.174  Sum_probs=62.6

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHhcCCcE-EEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc-----
Q 016162          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----  236 (394)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  236 (394)
                      .+.+|.|.| .|.+|....+. ++.+|++ |++.+...+..... .       ...|...+......++.+.+++     
T Consensus        30 ~~etVLI~gaaGgVG~~aiQl-ak~~Ga~~vi~~~~~~e~~~~l-~-------~~~gad~vi~~~~~~~~~~~~~~~~~G  100 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQI-GHLLGCSRVVGICGTQEKCLFL-T-------SELGFDAAVNYKTGNVAEQLREACPGG  100 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHH-HHHTTCSEEEEEESSHHHHHHH-H-------HHSCCSEEEETTSSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCchhhHHHHHH-HHHcCCcceecccchHHHHhhh-h-------hcccceEEeeccchhHHHHHHHHhccC
Confidence            357899999 59999999998 5899985 55556655443221 1       1223333322334567776666     


Q ss_pred             cCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       237 aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      .|+|+-++-  .++    -...++.++++..++.++.
T Consensus       101 vDvv~D~vG--g~~----~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         101 VDVYFDNVG--GDI----SNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             EEEEEESSC--HHH----HHHHHTTEEEEEEEEEC--
T ss_pred             ceEEEecCC--chh----HHHHhhhccccccEEEecc
Confidence            999998885  222    2567888999999999863

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.83  E-value=0.07  Score=41.24  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=32.1

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ..++++.|||-|.||-++|..+ ..+|.+|..+.+.+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l-~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFF-NATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhcchhheEeeccc
Confidence            3579999999999999999997 68999999998764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.62  E-value=0.043  Score=43.11  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      +++.|||.|.||-++|..+ ..+|.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l-~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFL-AGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHH-hhcCCeEEEEEec
Confidence            5899999999999999997 7999999988764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.59  E-value=0.09  Score=46.68  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             cccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhH
Q 016162          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (394)
Q Consensus       161 ~~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~  202 (394)
                      ++|+||++.|.| -+.||+++|++| ...|++|++.+++.+..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~l-a~~G~~Vv~~~r~~~~~   44 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRF-ATEKAKVVVNYRSKEDE   44 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcHHH
Confidence            479999999997 477999999998 47899999999876543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.47  E-value=0.34  Score=39.63  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=32.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhhH
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  202 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~~  202 (394)
                      .|.+|.|+|.|.+|...+..+ +.+|+ +|++.|++..+.
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~-~~~g~~~Vi~~~~~~~k~   66 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDKF   66 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEECCCCcHHHHHHHH-HHcCCceEEeecCcHHHH
Confidence            578999999999999999986 67774 899999887653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.068  Score=41.95  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=30.4

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      |++.|||.|.||-++|..+ ..+|.+|+.+.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l-~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGIL-SALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHH-hcCCcEEEEEeecc
Confidence            7999999999999999998 69999999998864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.34  E-value=0.066  Score=45.99  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ||+|.|||.|.-|-..|..| ...|++|++++...
T Consensus         1 ~KkV~IIGaG~aGL~aA~~L-a~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKL-KIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            68999999999999999998 57899999998753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.27  E-value=0.045  Score=45.36  Aligned_cols=36  Identities=11%  Similarity=0.307  Sum_probs=31.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  200 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~  200 (394)
                      .+|+|.|||-|.+|-..|..| ...|+ +|.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l-~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFL-ARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH-HHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHH-HHCCCCeEEEEEecCc
Confidence            478999999999999999997 67898 4999987653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.24  E-value=0.07  Score=41.54  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .+++.|||-|.||-++|..+ ..+|++|..+.+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l-~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVW-ARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHH-HHcCCceEEEEeec
Confidence            37899999999999999998 69999999887654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.24  E-value=0.15  Score=44.29  Aligned_cols=38  Identities=18%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      |+||++.|.|. +.||+++|+.| ...|++|++.||+.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l-~~~Ga~V~~~~r~~~~   40 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVL-SQEGAEVTICARNEEL   40 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            78999999987 56999999998 5889999999998643

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.18  E-value=0.36  Score=40.96  Aligned_cols=136  Identities=18%  Similarity=0.224  Sum_probs=82.2

Q ss_pred             HHHHHHHhcCCcEEEEEcCchhh---HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE-EcCCCChhhhhcc
Q 016162          179 AYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS-LHPVLDKTTYHLI  254 (394)
Q Consensus       179 ~vA~~la~~~G~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~-l~lPlt~~t~~li  254 (394)
                      ..+++| ...|.+|++=.-....   .+++|.        ..|     +....+.++++.++|+|+ +..|...+    .
T Consensus        21 ~~vkkl-~~~G~~V~vE~gaG~~a~fsD~~Y~--------~aG-----A~i~~~~~~~~~~~diilkV~~P~~~e----~   82 (194)
T d1l7da2          21 EVVKKL-VGLGFEVIVEQGAGVGASITDDALT--------AAG-----ATIASTAAQALSQADVVWKVQRPMTAE----E   82 (194)
T ss_dssp             HHHHHH-HHTTCEEEEETTTTGGGTCCHHHHH--------HTT-----CEEESSHHHHHSSCSEEEEEECCCCGG----G
T ss_pred             HHHHHH-HHCCCEEEEEcCcccccCCCHHHHH--------Hhh-----hhcchhhhhhhhcccceeEecCCcccc----c
Confidence            345666 5789998864322111   112211        122     223457789999999986 56675433    2


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 016162          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (394)
Q Consensus       255 ~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~  334 (394)
                      +.+.++.||+|+++|..-.  .....+++++|.+.++..+++|....-    ++=.++|  ++++    .+.=+-.+...
T Consensus        83 ~~~ei~~lk~g~~li~~l~--p~~~~~~~~~l~~~~it~~a~e~ipRi----sraQ~md--~Lss----qa~iaG~~a~~  150 (194)
T d1l7da2          83 GTDEVALIKEGAVLMCHLG--ALTNRPVVEALTKRKITAYAMELMPRI----SRAQSMD--ILSS----QSNLVAADASP  150 (194)
T ss_dssp             SCCGGGGSCTTCEEEEECC--GGGCHHHHHHHHHTTCEEEEGGGCCCS----GGGGGGC--HHHH----HHHHGHHHHHH
T ss_pred             chhHhhhccCceEEEEecc--cccchhHHHHHHhcCceEEeeeccccc----CCCCccC--CcCc----chhhhhHhHHH
Confidence            4567888999999998754  556778999999999999999876421    1112223  1111    11112234455


Q ss_pred             HHHHHHHHHH
Q 016162          335 LAALNVLGKI  344 (394)
Q Consensus       335 ~~~~ni~~~l  344 (394)
                      +++.++..++
T Consensus       151 ~~a~~l~~~~  160 (194)
T d1l7da2         151 LFAKNLLNFL  160 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            6778887776

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.17  E-value=0.11  Score=43.58  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=57.9

Q ss_pred             CCCeEEEE--ecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccc---ccCC----HHHHh
Q 016162          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK---RASS----MDEVL  234 (394)
Q Consensus       164 ~gktvGII--GlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----l~ell  234 (394)
                      .|.++.|+  |.|.+|....+. ++.+|++|++.-+......+..     +.+++.|.......   ...+    +.++.
T Consensus        28 ~g~~vli~~ga~g~vG~~aiql-Ak~~Ga~vI~~v~~~~~~~~~~-----~~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQI-GKLLNFNSISVIRDRPNLDEVV-----ASLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHH-HHHHTCEEEEEECCCTTHHHHH-----HHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHH-HhhcCCeEEEEEecccccchHH-----hhhhhccccEEEeccccchhHHHHHHHHHH
Confidence            47889998  679999999997 5899999998765543321110     01122232221110   0111    12221


Q ss_pred             ----cccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          235 ----READVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       235 ----~~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                          ...|+|+-++.  .++    -...+..|+++..+|.++
T Consensus       102 ~~~g~~vdvv~D~vg--~~~----~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQSGGEAKLALNCVG--GKS----STGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHTCCEEEEEESSC--HHH----HHHHHHTSCTTCEEEECC
T ss_pred             hhccCCceEEEECCC--cch----hhhhhhhhcCCcEEEEEC
Confidence                24788888875  222    155678899999999985

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.13  E-value=0.18  Score=44.36  Aligned_cols=39  Identities=15%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +|+||++.|.|-+ .||+++|++| ...|++|++.|++.+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGL-AEAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            6899999999875 5999999998 5889999999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.12  E-value=0.047  Score=42.87  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+++.|||.|.||-++|..+ ..+|++|..+.+...
T Consensus        25 p~~~viiG~G~iglE~A~~~-~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVW-GRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHH-HhcCCeEEEEEEccc
Confidence            47999999999999999998 799999999987653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.01  E-value=0.089  Score=46.63  Aligned_cols=39  Identities=28%  Similarity=0.306  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|.+. ||+++|++| ...|++|+..+++...
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~l-a~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEF-AGFGAVIHTCARNEYE   44 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            68999999998765 999999998 5889999999998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.99  E-value=0.089  Score=41.16  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      -.++++.|||.|.+|-++|..+ ...|.+|+.+++..
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l-~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAF-AKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHh-hccceEEEEEEecC
Confidence            3578999999999999999997 68899999997754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.98  E-value=0.22  Score=43.47  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|.+ .||+++|+.| ...|++|+..||+...
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELF-AKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            4889999999864 5999999998 5889999999998654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.91  E-value=0.091  Score=41.07  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      ++++.|||.|.+|-++|..| ...|.+|..+++...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l-~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATA-RTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHh-hcccceEEEEeeccc
Confidence            58999999999999999998 688999999987653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.89  E-value=0.072  Score=42.93  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHh-cCCcEEEEEcCch
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~  199 (394)
                      .||+|.|||-|.+|-++|..|++ ....+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            48999999999999999999843 2346899998765

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.83  E-value=0.14  Score=45.09  Aligned_cols=40  Identities=25%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             cccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+++||++.|.|-+. ||+++|++| ...|++|++.+++...
T Consensus         5 m~l~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAV-AAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHH-HHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            368999999998765 999999998 5889999999998654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.66  E-value=0.075  Score=41.91  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .+++.|||.|-||-++|..+ ..+|.+|..+.+..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~-~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVY-STLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHh-hcCCCEEEEEEeec
Confidence            47999999999999999997 79999999998765

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.062  Score=44.56  Aligned_cols=98  Identities=20%  Similarity=0.169  Sum_probs=54.5

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEE-EEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (394)
                      .+|+|.|+ |+||+.+++.+...-++++. ++++........   .++. .  .+..........++++++..+|+|+=.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~~~-~--~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGE-L--AGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTC-S--SSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hhhh-h--hccccCCceeeccHHHHhcccceEEEe
Confidence            37999995 99999999987555688865 556543321100   0000 0  011111122345778888999999866


Q ss_pred             CCCChh-hhhcccHHHHhcCCCCcEEEEcCCCc
Q 016162          244 PVLDKT-TYHLINKERLATMKKEAILVNCSRGP  275 (394)
Q Consensus       244 lPlt~~-t~~li~~~~l~~mk~gailIN~aRG~  275 (394)
                      ..  |+ +...+.    ...+.+.-+|-.++|-
T Consensus        79 s~--p~~~~~~~~----~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          79 TR--PEGTLNHLA----FCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             SC--HHHHHHHHH----HHHHTTCEEEECCCCC
T ss_pred             cc--HHHHHHHHH----HHHhccceeEEecCCC
Confidence            54  33 332221    1123455666667774

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.17  Score=44.09  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=32.3

Q ss_pred             cCCCeEEEEecCh---HHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          163 LKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       163 l~gktvGIIGlG~---IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      |+||++.|.|.+.   ||+++|+.| ...|++|++.+++..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l-~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            8999999999864   999999998 588999999988743

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.62  E-value=0.3  Score=43.05  Aligned_cols=39  Identities=18%  Similarity=0.373  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|. +.||+++|++| ...|++|++.|++...
T Consensus         3 rL~gKvalITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLF-VRYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999985 45999999998 5789999999997654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.62  E-value=0.093  Score=46.02  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             cCCCeEEEEec-Ch--HHHHHHHHHHhcCCcEEEEEcCchhhH
Q 016162          163 LKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQATR  202 (394)
Q Consensus       163 l~gktvGIIGl-G~--IG~~vA~~la~~~G~~V~~~d~~~~~~  202 (394)
                      |+||++.|.|. |.  ||+++|+.| ..-|++|+..+++..+.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~l-a~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHH-HHTTCEEEEEECSCHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH-HHcCCEEEEEeCChHHH
Confidence            89999999996 54  999999998 58899999998876543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=91.60  E-value=0.18  Score=44.93  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|. +.||+++|+.| ..-|++|++.||+.+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRF-VAEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999986 68999999998 4789999999998654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.28  Score=44.20  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|.+ .||+++|+.| ...|++|++.+|+...
T Consensus         9 ~L~gKvalITGas~GIG~aia~~l-a~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKEL-LELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            4999999999865 5999999998 4789999999998754

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.54  E-value=0.15  Score=42.46  Aligned_cols=103  Identities=12%  Similarity=0.200  Sum_probs=55.9

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcC-CcEEEEEcCc-----hhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLY-----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~-G~~V~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      .+|+|+| .|-.|+++.|.| ... ..++......     ..+.....    ...+  .+..........+.+.....+|
T Consensus         2 ikVaIiGATGyvG~eLlrlL-~~HP~~ei~~l~~~s~~~~aGk~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~d   74 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYV-NRHPHMTITALTVSAQSNDAGKLISDL----HPQL--KGIVDLPLQPMSDVRDFSADVD   74 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-HHCTTEEEEEEEEETTCTTTTCBHHHH----CGGG--TTTCCCBEEEESCGGGTCTTCC
T ss_pred             cEEEEECcccHHHHHHHHHH-HhCCCCceEeeEeeccccccccccccc----cccc--ccccccccccchhhhhhhcccc
Confidence            4899999 899999999998 555 5666544211     11111110    0001  1111111222234455567899


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 016162          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (394)
Q Consensus       239 iV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~  280 (394)
                      ++++|+|.  +...-+-.   ...+.|..+||.|..-=.+..
T Consensus        75 vvf~alp~--~~s~~~~~---~~~~~~~~vIDlSadfRl~~~  111 (179)
T d2g17a1          75 VVFLATAH--EVSHDLAP---QFLQAGCVVFDLSGAFRVNDR  111 (179)
T ss_dssp             EEEECSCH--HHHHHHHH---HHHHTTCEEEECSSTTSSSCH
T ss_pred             eeeccccc--hhHHHHhh---hhhhcCceeeccccccccccc
Confidence            99999993  22211212   223578999999854433333

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.11  Score=45.95  Aligned_cols=39  Identities=21%  Similarity=0.269  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|- +.||+++|++| ...|++|+..+++.+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITF-ATAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHH-HTTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            589999999976 56999999998 5889999999987654

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.17  Score=41.38  Aligned_cols=74  Identities=20%  Similarity=0.429  Sum_probs=46.9

Q ss_pred             cCCCeEEEEec---ChHHHHHHHHHHhcCC-cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccC
Q 016162          163 LKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       163 l~gktvGIIGl---G~IG~~vA~~la~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (394)
                      +.|.+|+++|=   |++..+.+..+ ..|| ..+++..|......+...    ..++..+   .......++++.+.++|
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l-~~~~~~~~~~~~P~~~~~~~~~~----~~~~~~~---~~~~~~~d~~~a~~~aD   73 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYIL----DMLDEKG---IAWSLHSSIEEVMAEVD   73 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHH----HHHHHTT---CCEEECSCSTTTGGGCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHH-HHcCCCeEEeeccchhhhhHHHH----HHHhhhc---cccccccCHHHHhCcCc
Confidence            67999999996   77999999886 6886 556666554322111110    0122222   22334568899999999


Q ss_pred             EEEEcC
Q 016162          239 VISLHP  244 (394)
Q Consensus       239 iV~l~l  244 (394)
                      +|....
T Consensus        74 vvy~~~   79 (160)
T d1ekxa2          74 ILYMTR   79 (160)
T ss_dssp             EEEECC
T ss_pred             eEEeec
Confidence            997553

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.39  E-value=0.16  Score=41.35  Aligned_cols=62  Identities=26%  Similarity=0.370  Sum_probs=45.9

Q ss_pred             CCCeEEEEec---ChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          164 KGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       164 ~gktvGIIGl---G~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      .|.+|+++|=   +++..+.+..+ ..||+++....|..-...+                 ..+....++++.++.+|+|
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~-~~~g~~~~i~~P~~~~~~~-----------------~~~~~~~~~~ea~~~aDvi   63 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQDEE-----------------NTFGTYVSMDEAVESSDVV   63 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH-HHcCCcccccCCchhhccc-----------------cceeEEEechhccccCcee
Confidence            5899999996   68999999987 6899999888775321100                 1122346899999999998


Q ss_pred             EEc
Q 016162          241 SLH  243 (394)
Q Consensus       241 ~l~  243 (394)
                      ...
T Consensus        64 y~~   66 (151)
T d2at2a2          64 MLL   66 (151)
T ss_pred             eee
Confidence            654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.39  E-value=0.16  Score=44.67  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|. +.||+++|+.| ...|++|++.|++.+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAY-VREGARVAIADINLEA   41 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHH-HHTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            488999999976 77999999998 5889999999998654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.23  E-value=0.07  Score=43.64  Aligned_cols=91  Identities=19%  Similarity=0.273  Sum_probs=51.5

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcC---CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEE
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (394)
                      |-+|||||. |-+|+++.+.| ...   -.++..+......- .        ..... .  .........++...+.|++
T Consensus         1 g~kVaIvGATGyvG~eLirlL-~~H~fp~~~l~~~~s~~s~G-~--------~~~~~-~--~~~~~~~~~~~~~~~~d~~   67 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKML-EESTLPIDKIRYLASARSAG-K--------SLKFK-D--QDITIEETTETAFEGVDIA   67 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHH-HTCCSCEEEEEEEECGGGTT-C--------EEEET-T--EEEEEEECCTTTTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HcCCCCceEEEEeccccccc-c--------ccccc-C--Ccccccccchhhhhhhhhh
Confidence            458999998 99999999998 444   33555544322110 0        00000 0  0011112334567889999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       241 ~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++++|.. .+..+    .....++|..+||.|.
T Consensus        68 f~~~~~~-~s~~~----~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          68 LFSAGSS-TSAKY----APYAVKAGVVVVDNTS   95 (154)
T ss_dssp             EECSCHH-HHHHH----HHHHHHTTCEEEECSS
T ss_pred             hhccCcc-chhhH----HhhhccccceehhcCh
Confidence            9999832 22222    2223467999999874

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.22  Score=45.52  Aligned_cols=34  Identities=15%  Similarity=0.100  Sum_probs=27.3

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      |.+.|.| .|-||+.+++.| ...|.+|++.||...
T Consensus         2 K~vLITGatGfiGs~lv~~L-l~~g~~V~~~~r~~~   36 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFL-LEKGYEVHGIKRRAS   36 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECC---
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCEEEEEECCCc
Confidence            5667887 999999999998 577999999998653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.09  E-value=0.13  Score=40.05  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=30.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ++++.|||.|.+|-++|..| ..+|.+|..+++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNL-AEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHh-hcccceEEEEeccc
Confidence            46899999999999999998 68999999998764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.28  Score=43.14  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ..|+||++.|.|. +.||+++|++|+ ..|++|++.+++...
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~~   46 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVGN   46 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4599999999975 579999999984 789999999998653

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.96  E-value=0.21  Score=43.80  Aligned_cols=40  Identities=23%  Similarity=0.187  Sum_probs=34.3

Q ss_pred             cccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ..|.||++.|.|- +.||+++|+.| ...|++|+.+|++...
T Consensus         6 f~lenKvalITGas~GIG~a~a~~l-a~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKML-AKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHH-TTTSSEEEEEESSHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            3588999999987 57999999998 5889999999997654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.62  E-value=0.057  Score=42.73  Aligned_cols=66  Identities=17%  Similarity=0.158  Sum_probs=40.9

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhc-ccCEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLHP  244 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~l  244 (394)
                      ++.|+|+|++|+.+++.+...-|++++++ |..+...-.             ...+..+.....++++.. ..++.++++
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~-------------~I~Gi~V~~~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR-------------PVRGGVIEHVDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC-------------EETTEEEEEGGGHHHHSTTTCCEEEECS
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC-------------EECCEEEecHHHHHHHHhhcccEEEEeC
Confidence            79999999999999986533557787754 655543100             012223333456666653 456667777


Q ss_pred             C
Q 016162          245 V  245 (394)
Q Consensus       245 P  245 (394)
                      |
T Consensus        72 ~   72 (126)
T d2dt5a2          72 P   72 (126)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.62  E-value=0.14  Score=42.70  Aligned_cols=69  Identities=14%  Similarity=0.096  Sum_probs=42.6

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCc--cccccCCHHHHhcccCEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV  240 (394)
                      +||.|.| .|.||+.+++.|. .-|  ..|+...|++......          ..+....  ......++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll-~~g~~v~v~~~~R~~~~~~~~----------~~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGKEKI----------GGEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHH-HTTTTCEEEEEESCHHHHHHT----------TCCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHH-HCCCcEEEEEEcCCHHHHHhc----------cCCcEEEEeeeccccccccccccceee
Confidence            6899998 7999999999984 445  5677777766542110          0011000  011123456678899999


Q ss_pred             EEcCC
Q 016162          241 SLHPV  245 (394)
Q Consensus       241 ~l~lP  245 (394)
                      +.+..
T Consensus        73 i~~a~   77 (252)
T d2q46a1          73 VILTS   77 (252)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            87754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.58  E-value=0.12  Score=39.82  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .+++.|||-|.+|-++|..+ ..+|.+|+.+++..
T Consensus        21 p~~vvIiGgG~~G~E~A~~l-~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAY-RKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHH-hhcccceEEEeeec
Confidence            47999999999999999998 68999999998754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=90.53  E-value=0.31  Score=42.72  Aligned_cols=38  Identities=16%  Similarity=-0.014  Sum_probs=31.4

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      +|+||++.|.|-+ .||.++|+.| ...|++|++.+++..
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~l-a~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSREL-VKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEEECCcc
Confidence            5899999999877 5999999998 588998877765543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.39  E-value=1.4  Score=35.39  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             cCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      -.|.+|.|+|.|.+|...+..++...+.+|++.|++..+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            357899999999999999988643444589999988765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.33  E-value=0.36  Score=39.22  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~  201 (394)
                      .|.+|.|+|.|-+|...++.+ +.+|+ +|++.|++..+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~a-k~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHH-HHHhcCceEEEcccHHH
Confidence            578999999999999999985 78886 67778877654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.26  E-value=0.44  Score=41.69  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=32.9

Q ss_pred             cCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhhHH
Q 016162          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRL  203 (394)
Q Consensus       163 l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~~~  203 (394)
                      |+||++.|.|.+. ||+++|++| ..-|++|++.+++.....
T Consensus         2 L~gK~alITGas~GIG~aiA~~l-a~~Ga~V~~~~r~~~~~~   42 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATAL-AAQGADIVLNGFGDAAEI   42 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEECCSCHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCcHHHH
Confidence            6899998887655 999999998 488999999998754433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.21  E-value=0.17  Score=40.06  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .++++.|||-|.+|-++|..+ ...|.+|..+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l-~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATA-IKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHH-HhhCcceeeeeeccc
Confidence            368999999999999999997 688999999987654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.23  Score=43.49  Aligned_cols=38  Identities=24%  Similarity=0.256  Sum_probs=32.6

Q ss_pred             cCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +.||++.|.|. +.||+++|+.| ...|++|+..|++.+.
T Consensus         1 i~GKvalITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEAL-LLKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            46999999987 55999999998 4789999999998764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.24  Score=41.42  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ....+|+|.|||-|..|-+.|..| ...|++|..|++..
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~l-a~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINA-AARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHH-HhhccceEEEeccC
Confidence            456789999999999999999997 68899999999865

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=89.86  E-value=0.36  Score=40.20  Aligned_cols=104  Identities=16%  Similarity=0.133  Sum_probs=64.1

Q ss_pred             ccCCCeEEEEecC--hHHHHHHHHHHhcCCcEEEEEcCchhh---HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcc
Q 016162          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~~G~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (394)
                      .+.|.+|+++|=|  ++..+++..+ ..||+++.+..|..-.   ......+.+   ....|   .......++++.+..
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~-~~~g~~l~~~~P~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~   74 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRAL---AQQNG---GNITLTEDVAKGVEG   74 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHH---HHHTT---CEEEEESCHHHHHTT
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEEechHhhhhHHHHHHHHHH---HHhcC---CceEEEechhhcccc
Confidence            5789999999955  7889999886 6899999999875321   111111111   11111   222345789999999


Q ss_pred             cCEEEEcCCCC----hh---h-------hhcccHHHHhcCCCCcEEEEcC
Q 016162          237 ADVISLHPVLD----KT---T-------YHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       237 aDiV~l~lPlt----~~---t-------~~li~~~~l~~mk~gailIN~a  272 (394)
                      +|+|....=..    .+   .       ...++.......+++++|.-+.
T Consensus        75 aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          75 ADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             CCEEEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            99996543211    11   0       1223444556678888888773

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.70  E-value=0.97  Score=37.44  Aligned_cols=92  Identities=17%  Similarity=0.278  Sum_probs=53.4

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEc-Cchh-hHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYD-LYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .+|||+| .|-.|+++.+.|++-=..++...- ++.. +....   .+.. +  .+..   .....+.+++..++|+|++
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~---~~p~-~--~~~~---~~~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEE---IFPS-T--LENS---ILSEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHH---HCGG-G--CCCC---BCBCCCHHHHHHHCSEEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccc---cCch-h--hccc---cccccCHhHhccccceEEE
Confidence            3799997 599999999998432245655542 2221 11111   1100 0  0111   1123467788889999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++|.... ..+     .... .+..+||.|-
T Consensus        73 a~p~~~s-~~~-----~~~~-~~~~VIDlSa   96 (176)
T d1vkna1          73 ALPAGAS-YDL-----VREL-KGVKIIDLGA   96 (176)
T ss_dssp             CCSTTHH-HHH-----HTTC-CSCEEEESSS
T ss_pred             ccccHHH-HHH-----HHhh-ccceEEecCc
Confidence            9995433 222     2233 5789999985

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.61  E-value=0.75  Score=38.07  Aligned_cols=113  Identities=19%  Similarity=0.125  Sum_probs=65.2

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhc--CCc----EEEEEcCchhhH-HHHHHHhhhhhhhhcCC-CCccccccCCHHHHhc
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLR  235 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~--~G~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~  235 (394)
                      -.+|.|+|. |.||+.++-+|+.+  ||.    .+..+|...... .+...-+    +.+... .........+..+.+.
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~md----l~d~a~~~~~~~~~~~~~~~~~~   99 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----LEDSLYPLLREVSIGIDPYEVFE   99 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCTTEEEEEEESCHHHHTT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhh----hcccccccccCccccccchhhcc
Confidence            458999996 99999999887543  453    677778665432 1211101    111111 1112223467889999


Q ss_pred             ccCEEEEcC--CCChh-hh-hcc--c-------HHHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 016162          236 EADVISLHP--VLDKT-TY-HLI--N-------KERLAT-MKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       236 ~aDiV~l~l--Plt~~-t~-~li--~-------~~~l~~-mk~gailIN~aRG~~vde~aL~  283 (394)
                      .+|+|++.-  |..+. ++ .++  |       .+.+.. .+++++++=++.  ++|.-+++
T Consensus       100 ~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~i  159 (175)
T d7mdha1         100 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALI  159 (175)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred             CCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHH
Confidence            999999885  22221 11 111  1       123333 566887777754  68887776

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.2  Score=47.72  Aligned_cols=100  Identities=19%  Similarity=0.180  Sum_probs=58.6

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCchhh--HHH-H-----------HHHhhhhhhhhcC-CCCcccc
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RLE-K-----------FVTAYGQFLKANG-EQPVTWK  225 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~~~--~~~-~-----------~~~~~~~~~~~~~-~~~~~~~  225 (394)
                      .|++++|.|||+|.+|.++++.|+ ..|. ++..+|...-.  .+. +           ..+...+.+.... ...+...
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~-~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~  112 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLA-LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  112 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHH-TTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence            368899999999999999999985 4555 67888764311  000 0           0000001111111 0111000


Q ss_pred             --c-cCCHHHHhcccCEEEEcCCCChhhhhcccHHHHhcCC
Q 016162          226 --R-ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (394)
Q Consensus       226 --~-~~~l~ell~~aDiV~l~lPlt~~t~~li~~~~l~~mk  263 (394)
                        . ....++.+.+.|+|+.++. +.+++.++|..-+...+
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             eccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence              0 1123578899999999886 67888888877665443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.49  E-value=0.39  Score=41.92  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|- +.||+++|++| ...|++|+..+++.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKF-VEEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999984 56999999998 5789999999997654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.48  E-value=0.15  Score=45.34  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEecC---hHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       161 ~~l~gktvGIIGlG---~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .+|+||++.|.|.+   .||+++|+.| ...|++|+..++...
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~l-a~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSL-AAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHH-HHTTCEEEEEEEHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEeCchh
Confidence            47999999999986   5999999998 588999999887654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.43  E-value=0.18  Score=44.24  Aligned_cols=82  Identities=13%  Similarity=0.105  Sum_probs=47.9

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcc--ccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDiV~l  242 (394)
                      +||.|+| .|.||+.+++.| ...|.+|++.+|............. ..+...+..-+.  .....++.+.+..+|.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            5699999 599999999997 5779999999886532111000000 001111111000  1112345677889999988


Q ss_pred             cCCCChh
Q 016162          243 HPVLDKT  249 (394)
Q Consensus       243 ~lPlt~~  249 (394)
                      +.+....
T Consensus        82 ~~~~~~~   88 (312)
T d1qyda_          82 ALAGGVL   88 (312)
T ss_dssp             CCCCSSS
T ss_pred             hhhhccc
Confidence            8765433

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.40  E-value=0.27  Score=43.55  Aligned_cols=39  Identities=18%  Similarity=0.156  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|. +.||+++|+.| ...|++|+..+++...
T Consensus         2 rL~gK~alVTGas~GIG~aia~~l-a~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILF-AQEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999975 56999999998 5889999999998654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.33  E-value=0.43  Score=38.55  Aligned_cols=76  Identities=20%  Similarity=0.141  Sum_probs=45.2

Q ss_pred             CeEEEEe-cChHHHHHHHHHHhc--CC----cEEEEEcCchhhHHHHHHHhhhhhhhhcCC-CCccccccCCHHHHhccc
Q 016162          166 QTVGVIG-AGRIGSAYARMMVEG--FK----MNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREA  237 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~--~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~a  237 (394)
                      .+|.||| .|.+|+.+|-.|+.+  |+    ..+..+|........+..+   ..+..... .........+.++.+.+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVL---MELQDCALPLLKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH---HHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhh---hhhcccccccccccccCcccccccCCc
Confidence            3899999 599999999877431  23    2577888765432211111   00111111 111222345788999999


Q ss_pred             CEEEEcC
Q 016162          238 DVISLHP  244 (394)
Q Consensus       238 DiV~l~l  244 (394)
                      |+|+++.
T Consensus        81 dvVVita   87 (154)
T d5mdha1          81 DVAILVG   87 (154)
T ss_dssp             SEEEECC
T ss_pred             eEEEEec
Confidence            9999885

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.27  E-value=0.24  Score=43.47  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|-+ .||+++|++| ..-|++|+..|++...
T Consensus         3 rL~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~   42 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLL-LGEGAKVAFSDINEAA   42 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            4899999999854 5999999998 5889999999997653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.25  Score=43.61  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             CCCeEEEE--ecChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       164 ~gktvGII--GlG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .||+|.||  |-+-||.++|+.|++..|.+|+.++|+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48999999  888999999999865569999999998765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.093  Score=45.89  Aligned_cols=38  Identities=26%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCc-EEEEEcCch
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~-~V~~~d~~~  199 (394)
                      ..|++++|.|+|+|.+|..+|..|+ ..|. +++.+|...
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCcc
Confidence            3599999999999999999999984 6676 788888543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.95  E-value=0.15  Score=41.16  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=49.1

Q ss_pred             CeEEEEec-ChHHHHHHHHHHh-cC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (394)
                      .+|||||. |-+|+++.+.|.+ .+ ..++..+..+...-         ..... ........  ..-.+.+..+|++++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G---------k~i~~-~~~~~~~~--~~~~~~~~~~d~vf~   70 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG---------QRMGF-AESSLRVG--DVDSFDFSSVGLAFF   70 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT---------CEEEE-TTEEEECE--EGGGCCGGGCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC---------cceee-ccccchhc--cchhhhhccceEEEe
Confidence            57999987 9999999999842 33 33555443221110         00000 00000011  111244788999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       243 ~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ++|... ...+. ...   .+.|.++||.|.
T Consensus        71 a~p~~~-s~~~~-~~~---~~~g~~VID~Ss   96 (144)
T d2hjsa1          71 AAAAEV-SRAHA-ERA---RAAGCSVIDLSG   96 (144)
T ss_dssp             CSCHHH-HHHHH-HHH---HHTTCEEEETTC
T ss_pred             cCCcch-hhhhc-ccc---ccCCceEEeech
Confidence            998322 22221 222   357899999864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.89  E-value=0.23  Score=43.04  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=30.2

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      -|+|.|+|. |.||+.+++.| ..-|.+|++.+|....
T Consensus         3 kkKILVtGatG~iG~~l~~~L-~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEECCCcc
Confidence            368999985 99999999998 5679999999986543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.56  E-value=0.25  Score=43.34  Aligned_cols=40  Identities=23%  Similarity=0.213  Sum_probs=31.7

Q ss_pred             cccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      +.|.||++.|.|.+. ||+++|+.| ..-|++|++.+++...
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~l-a~~G~~Vvi~~~~~~~   42 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGSSSK   42 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEcCCChH
Confidence            469999999997655 999999998 5889999875444333

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=88.55  E-value=2.1  Score=35.11  Aligned_cols=112  Identities=13%  Similarity=0.031  Sum_probs=69.2

Q ss_pred             CceEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-CCCcEEEecCCccc----cHHHHHHh
Q 016162           14 GKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALIG-DKCDGVIGQLTEDW----GETLFAAL   82 (394)
Q Consensus        14 ~~~~vlv~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~-~~~d~ii~~~~~~i----~~~~l~~l   82 (394)
                      .++|||+...-++      ......|+..|++|.....   ..+++++.+.+. .++|+|.+.+...-    -+++.+.+
T Consensus        36 r~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~---~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L  112 (168)
T d7reqa2          36 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPL---FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKEL  112 (168)
T ss_dssp             SCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCT---TBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCC---cCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHH
Confidence            4678888643322      1134567788998865432   347888886553 36999887653222    24556667


Q ss_pred             cccCC-cEEEEcccCccccchhHHhhCCceEecCCCCCchhhHHHHH
Q 016162           83 SRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA  128 (394)
Q Consensus        83 ~~l~~-k~I~~~g~G~d~id~~~a~~~gI~v~n~p~~~~~~vAE~~l  128 (394)
                      .++|. ++....|--+-.-|.+...+.|+.-+-.||.+...+|...+
T Consensus       113 ~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~~~  159 (168)
T d7reqa2         113 DKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLV  159 (168)
T ss_dssp             HHTTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHHHH
T ss_pred             HhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHHHHH
Confidence            66653 34444442246778888899999988899976444444333

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=88.49  E-value=0.3  Score=40.44  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=26.3

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      +|||=|||+||+.+.|.+...-..+|.+.+...
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            799999999999999987444468887776543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=88.46  E-value=0.21  Score=42.26  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      -|+|.|||.|-.|-+.|..| ...|.+|.++|+..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L-~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALIL-ARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            45899999999999999998 57799999999753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.31  E-value=0.49  Score=38.20  Aligned_cols=112  Identities=23%  Similarity=0.252  Sum_probs=58.0

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhc--CCc----EEEEEcCchhhH-HHHHHHhhhhhhhhcC-CCCccccccCCHHHHhcc
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~--~G~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (394)
                      .+|.|+|. |.+|+.+|-.|+.+  +|.    ....++...... .......    +.... ..........+..+.++.
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME----LEDCAFPLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh----hhccccccccccccCCchhhhccc
Confidence            48999996 99999999887432  231    223333322221 1111100    11111 111122234567889999


Q ss_pred             cCEEEEcC--CCChh-hh-hcc--cH-------HHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 016162          237 ADVISLHP--VLDKT-TY-HLI--NK-------ERLAT-MKKEAILVNCSRGPVIDEVALV  283 (394)
Q Consensus       237 aDiV~l~l--Plt~~-t~-~li--~~-------~~l~~-mk~gailIN~aRG~~vde~aL~  283 (394)
                      ||+|+++.  |..|. ++ .++  |.       +.+.. .+++++++.++.  ++|.-..+
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~~  139 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNALI  139 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHHH
Confidence            99999886  33322 21 122  11       12222 467888888864  56654433

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=88.20  E-value=1.6  Score=34.98  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=48.9

Q ss_pred             CeEEEEe-cChHHHHHHHHHHh--cC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          166 QTVGVIG-AGRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~--~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      .+||||| .|-.|+++.++|..  .+ ..++..+..+.....         ...-.+. ........+ .+.+.++|+|+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk---------~~~~~~~-~~~~~~~~~-~~~~~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP---------APNFGKD-AGMLHDAFD-IESLKQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB---------CCCSSSC-CCBCEETTC-HHHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc---------ccccCCc-ceeeecccc-hhhhccccEEE
Confidence            4799996 69999999987632  12 246655443321100         0000011 111111223 24578999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       242 l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      +|+|. ..+..+. . .+..-..++++||.|.
T Consensus        70 ~alp~-~~s~~~~-~-~l~~~g~~~~VIDlSs   98 (147)
T d1mb4a1          70 TCQGG-SYTEKVY-P-ALRQAGWKGYWIDAAS   98 (147)
T ss_dssp             ECSCH-HHHHHHH-H-HHHHTTCCSEEEESSS
T ss_pred             EecCc-hHHHHHh-H-HHHHcCCceEEEeCCc
Confidence            99993 2223222 2 2222344567888763

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.11  E-value=0.37  Score=41.24  Aligned_cols=46  Identities=26%  Similarity=0.386  Sum_probs=36.8

Q ss_pred             CCCCcccccccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       153 w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      |.+..+. ..-.+++|.|||.|..|-..|..| ...|++|+++++...
T Consensus        38 ~~p~~~~-~~~~~k~VvIIGaGpAGl~aA~~l-~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          38 WHPEKFR-QTKNKDSVLIVGAGPSGSEAARVL-MESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCC-CCSSCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CCCCccC-cccCCceEEEEcccHHHHHHHHHH-HHhccceeeEeeccc
Confidence            5544332 345889999999999999999997 688999999987653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=87.45  E-value=0.22  Score=43.48  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ..|+|.|||.|..|-..|..| ...|.+|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L-~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVL-AGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            567999999999999999998 46699999998754

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.40  E-value=0.25  Score=39.07  Aligned_cols=27  Identities=22%  Similarity=0.525  Sum_probs=22.8

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEE
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI  193 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~  193 (394)
                      .+|+|.|+ |+||+.+++.+ ..-|+++.
T Consensus         1 mki~i~G~~GrMG~~i~~~~-~~~~~~l~   28 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVF-SEKGHELV   28 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-hcCCCeEE
Confidence            37999996 99999999986 67788765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.40  E-value=0.21  Score=43.24  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=29.2

Q ss_pred             CeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ++|.|+|. |-||+.+++.| ...|.+|++.|+..
T Consensus         2 MKIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEeechh
Confidence            46899996 99999999998 78899999999854

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=87.37  E-value=0.54  Score=41.37  Aligned_cols=97  Identities=14%  Similarity=0.143  Sum_probs=60.9

Q ss_pred             ccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEE
Q 016162          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (394)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (394)
                      ..+|++|++||+-    ...+++ +.-|++++++|+++..                +.     .....-++++++||+|+
T Consensus       119 ~~~g~kV~vIG~~----P~v~~l-~~~~~~~~VlE~~p~~----------------gd-----~p~~~~~~lLp~aD~vi  172 (251)
T d2h1qa1         119 EVKGKKVGVVGHF----PHLESL-LEPICDLSILEWSPEE----------------GD-----YPLPASEFILPECDYVY  172 (251)
T ss_dssp             TTTTSEEEEESCC----TTHHHH-HTTTSEEEEEESSCCT----------------TC-----EEGGGHHHHGGGCSEEE
T ss_pred             ccCCCEEEEEecc----hhHHHH-HhcCCcEEEEeCCCCC----------------CC-----CCchHHHHhhhcCCEEE
Confidence            3579999999875    344444 4678899999998642                11     11234578889999988


Q ss_pred             EcCCCChhhhhccc---HHHHhcCCCCcEEEEcC-----------C-------CcccCHHHHHHHHHcCC
Q 016162          242 LHPVLDKTTYHLIN---KERLATMKKEAILVNCS-----------R-------GPVIDEVALVEHLKQNP  290 (394)
Q Consensus       242 l~lPlt~~t~~li~---~~~l~~mk~gailIN~a-----------R-------G~~vde~aL~~aL~~g~  290 (394)
                      +.-    .  -++|   +..|++.|+...+|=++           +       -.+.|.+.+.+.+++|.
T Consensus       173 iTG----s--TlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~~Gg  236 (251)
T d2h1qa1         173 ITC----A--SVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAE  236 (251)
T ss_dssp             EET----H--HHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSS
T ss_pred             EEe----c--hhhcCCHHHHHHhCCcCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHHHcCC
Confidence            763    1  1233   45667677665443221           1       12477788888877764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.12  E-value=0.5  Score=41.22  Aligned_cols=35  Identities=31%  Similarity=0.347  Sum_probs=27.3

Q ss_pred             CeEEEE-ec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          166 QTVGVI-GA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       166 ktvGII-Gl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      |||.+| |- +.||+++|+.|+ ..|++|++.||+...
T Consensus         1 KKValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            456444 55 569999999984 779999999998754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=87.03  E-value=0.33  Score=41.46  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ..++|.|||.|..|-..|..| ...|.+|.++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L-~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALML-RDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            467999999999999999998 56799999999754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.75  E-value=0.57  Score=41.03  Aligned_cols=39  Identities=13%  Similarity=0.079  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|. +.||+++|+.| ...|++|++.+|+...
T Consensus         2 rl~gKvalVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLF-AREGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            488999999875 68999999998 5789999999998654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.65  E-value=0.64  Score=41.83  Aligned_cols=77  Identities=14%  Similarity=0.137  Sum_probs=47.5

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCcccccc---CCHHHHhcccCEE
Q 016162          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLREADVI  240 (394)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aDiV  240 (394)
                      -|||.|+| .|.||+.+++.| ..-|.+|++..|+...........      ..+.........   ..++.++..+|.+
T Consensus         3 kktIlVtGatG~iG~~lv~~L-l~~G~~V~~l~R~~~~~~~~~~~~------~~~v~~~~gD~~d~~~~~~~a~~~~~~~   75 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEELQA------IPNVTLFQGPLLNNVPLMDTLFEGAHLA   75 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHHHHT------STTEEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHH-HhCCCeEEEEECCcchhhhhhhcc------cCCCEEEEeeCCCcHHHHHHHhcCCceE
Confidence            57999998 699999999998 577999999987654422211110      011100000011   1256678899999


Q ss_pred             EEcCCCCh
Q 016162          241 SLHPVLDK  248 (394)
Q Consensus       241 ~l~lPlt~  248 (394)
                      ++..+...
T Consensus        76 ~~~~~~~~   83 (350)
T d1xgka_          76 FINTTSQA   83 (350)
T ss_dssp             EECCCSTT
T ss_pred             Eeeccccc
Confidence            87766443

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=86.63  E-value=0.31  Score=40.58  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=23.4

Q ss_pred             eEEEEecChHHHHHHHHHHh--cCCcEEEEE-cCc
Q 016162          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYY-DLY  198 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~--~~G~~V~~~-d~~  198 (394)
                      +|||=|||+||+.+.|.+..  ....+|.+. |+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~   36 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG   36 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC
Confidence            79999999999999997532  223666655 443

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=86.63  E-value=0.32  Score=40.41  Aligned_cols=34  Identities=32%  Similarity=0.489  Sum_probs=25.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchh
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQA  200 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~  200 (394)
                      +|||=|||+||+.+.|.+...-..+|.+. |+...
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~   37 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFID   37 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            79999999999999997644445677766 44443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=0.3  Score=42.53  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=32.7

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      |+||++.|.| -+.||+++|+.| ...|++|++.|++...
T Consensus         4 l~gK~alITGas~GIG~aia~~l-a~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAF-AREGAKVIATDINESK   42 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            8999988885 578999999998 5779999999998654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=85.95  E-value=0.21  Score=41.60  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=26.2

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEE-cCchhh
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQAT  201 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~-d~~~~~  201 (394)
                      +|||=|||+||+.+.|.+ ...+.+|.+. |+....
T Consensus         2 kIgINGfGRIGR~~~R~~-~~~~~~ivaINd~~~~~   36 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAA-LEMGAQVVAVNDPFIAL   36 (169)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHHTCCEEEEECTTSCH
T ss_pred             eEEEECCcHHHHHHHHHH-HhCCCcEEEECCCCcCH
Confidence            799999999999999986 5557777666 444443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.93  E-value=0.26  Score=42.82  Aligned_cols=38  Identities=18%  Similarity=0.109  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      .|.||++.|.|.+ .||+++|++| ...|++|++.+|+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRL-AADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCcc
Confidence            5899999999877 4999999998 588999999998754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=85.92  E-value=0.34  Score=43.62  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .+||+|.|.| .|-||+.+++.| ...|.+|+++||....
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCCc
Confidence            4689999998 889999999998 6789999999987653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.90  E-value=0.71  Score=40.19  Aligned_cols=36  Identities=19%  Similarity=0.141  Sum_probs=28.6

Q ss_pred             CCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          165 GQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       165 gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      ||.+.|.|.+ .||+++|+.| ..-|++|++.+|+.+.
T Consensus         2 gKValITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   38 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRL-GKEGLRVFVCARGEEG   38 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            5666666654 5999999998 4789999999998654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.86  E-value=0.38  Score=40.73  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             eEEEEecChHHHHHHHHHHh-cCCcEEEEEcCch
Q 016162          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~-~~G~~V~~~d~~~  199 (394)
                      +|.|||-|..|-+.|+.|++ ++|.+|++||+.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999999999987644 5899999999875

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.84  E-value=0.39  Score=39.81  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=24.3

Q ss_pred             eEEEEecChHHHHHHHHHHh--cCCcEEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDL  197 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~--~~G~~V~~~d~  197 (394)
                      +|||=|||+||+.+.|.+..  ..+.+|.+.+-
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            79999999999999998633  33578776654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=85.80  E-value=0.24  Score=41.08  Aligned_cols=113  Identities=18%  Similarity=0.209  Sum_probs=57.6

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCC
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP  245 (394)
                      .+|||=|||+||+.+.|.+ ..-+.+|.+.+.......-.+.-.|.+.   .|...         .++-...|.+++   
T Consensus         1 ikigINGfGRIGR~~~R~l-~~~~i~iv~INd~~~~~~~ayLl~yDS~---hG~~~---------~~v~~~~~~l~i---   64 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRIL-HSRGVEVALINDLTDNKTLAHLLKYDSI---YHRFP---------GEVAYDDQYLYV---   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSCHHHHHHHHHCCTT---TCSCS---------SCEEECSSEEEE---
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEECCCcchhhhhheeecccc---cCccc---------cccccccceeEe---
Confidence            3799999999999999886 5556777666543322222233333210   11111         111223354443   


Q ss_pred             CChhhhhcccHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016162          246 LDKTTYHLINKE---RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (394)
Q Consensus       246 lt~~t~~li~~~---~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaal  296 (394)
                       +.....+....   .+.--+-|.-+|=-++|.-.+.+.+..-|+.| .....+
T Consensus        65 -~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkVii  116 (168)
T d2g82a1          65 -DGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVII  116 (168)
T ss_dssp             -TTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             -cceeEEEEecCChHHCcccccCCceeEeccccccchHHhhhhhccc-cceeee
Confidence             11222233222   22222234444444578888888887777755 444444

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.62  E-value=0.34  Score=42.89  Aligned_cols=39  Identities=15%  Similarity=0.190  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEecC-hHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      .|+||++.|.|.+ .||+++|+.| ...|++|++.|++...
T Consensus         1 rL~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   40 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIF-AKEGAQVTITGRNEDR   40 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            3789999999764 5999999998 4789999999998654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.59  E-value=0.41  Score=43.21  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=31.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      +.|+|.|||.|..|-.+|..| ...|.+|++++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L-~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQL-AEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HhCCCCEEEEECCCC
Confidence            368999999999999999998 466999999987653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.47  E-value=0.38  Score=38.33  Aligned_cols=31  Identities=29%  Similarity=0.552  Sum_probs=24.3

Q ss_pred             eEEEEe-cChHHHHHHHHHHhcCCcEEE-EEcC
Q 016162          167 TVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDL  197 (394)
Q Consensus       167 tvGIIG-lG~IG~~vA~~la~~~G~~V~-~~d~  197 (394)
                      ||+|+| .|+||+.+++.+.+.-++++. ++|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            689999 699999999986556788765 4443

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=85.09  E-value=1.1  Score=40.31  Aligned_cols=74  Identities=19%  Similarity=0.375  Sum_probs=48.5

Q ss_pred             ccCCCeEEEEec---ChHHHHHHHHHHhcC-CcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhccc
Q 016162          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (394)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (394)
                      .+.|++|.++|-   +++-.+.+..+ ..| |+++++..|..-...+...+    .++..   +..+....++++.++.+
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~-~~~~~~~~~i~~P~~~~~~~~~~~----~~~~~---~~~~~~~~d~~~a~~~a  222 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEK---GIAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHH----HHHTT---TCCEEEESCGGGTTTTC
T ss_pred             CcccceEEEEeccccCcchHHHHHHH-HhccCceEEEeCCcccccchhccc----ccccc---cceeeeeechhhhccCC
Confidence            488999999997   77888888776 577 57888887754321111111    11111   22334457899999999


Q ss_pred             CEEEEc
Q 016162          238 DVISLH  243 (394)
Q Consensus       238 DiV~l~  243 (394)
                      |+|...
T Consensus       223 Dvvy~~  228 (310)
T d1tuga1         223 DILYMT  228 (310)
T ss_dssp             SEEEEC
T ss_pred             ceeeec
Confidence            999754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.99  E-value=0.65  Score=41.74  Aligned_cols=38  Identities=32%  Similarity=0.349  Sum_probs=32.4

Q ss_pred             cccCCCeEEEEecCh-HHHHHHHHHHhcCCcEEEEEcCch
Q 016162          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ..|+||++.|.|.+. ||+++|+.| ...|++|++.|+..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~l-a~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAF-AERGALVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCc
Confidence            368999999997654 999999998 58899999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.88  E-value=0.28  Score=41.96  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=47.4

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCC--cEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCE
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (394)
                      ..+|+|.|.| .|.||+.+++.|. .-|  .+|++++|++.........       .............++.+.+..+|+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll-~~g~~~~v~~~~R~~~~~~~~~~~-------~i~~~~~D~~~~~~~~~~~~~~d~   83 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEEAYK-------NVNQEVVDFEKLDDYASAFQGHDV   83 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSGGGG-------GCEEEECCGGGGGGGGGGGSSCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-hCCCCCEEEEEecChhhhcccccc-------eeeeeeeccccccccccccccccc
Confidence            5678999996 7999999999874 445  3899999865432111000       000000011123456677899999


Q ss_pred             EEEcCCCC
Q 016162          240 ISLHPVLD  247 (394)
Q Consensus       240 V~l~lPlt  247 (394)
                      |+.|+..+
T Consensus        84 vi~~~~~~   91 (232)
T d2bkaa1          84 GFCCLGTT   91 (232)
T ss_dssp             EEECCCCC
T ss_pred             cccccccc
Confidence            98887543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.88  E-value=0.47  Score=41.41  Aligned_cols=38  Identities=29%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhh
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~  201 (394)
                      |+||++.|.| -+.||+++|+.| ..-|++|++.|++.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~l-a~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAF-AREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSTTH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            7899999998 678999999998 5889999999988654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.49  E-value=0.32  Score=36.75  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=29.7

Q ss_pred             cccCCCeEEEEecChHHHHHHHHHHhcCCcEEEEEcCc
Q 016162          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (394)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~  198 (394)
                      .+.+||+|.|||.|+-|..+|.-| ...+.+|+...++
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l-~~~ak~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHL-TPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHH-TTTSCSSEEEECT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHH-HHhcCEEEEEEec
Confidence            578999999999999999999987 4666666554443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.38  E-value=0.31  Score=40.54  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=30.6

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhH
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~  202 (394)
                      ..+.+|.|.| .|.+|....+. ++.+|++|++..++.++.
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQl-Ak~~Ga~Via~~~~~~k~   69 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVAL-LHKLGYQVVAVSGRESTH   69 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCGGGH
T ss_pred             CCCCcEEEEEccccchHHHHHH-HHHcCCCeEEEecchhHH
Confidence            3455777765 59999999998 589999999998877653

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.06  E-value=0.46  Score=39.22  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=26.1

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEc-Cchh
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQA  200 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d-~~~~  200 (394)
                      +|||=|||+||+.+.|.+...-..+|.+.+ +...
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d   36 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMD   36 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCC
Confidence            799999999999999986434467877764 5443

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=83.83  E-value=0.41  Score=39.75  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=24.6

Q ss_pred             eEEEEecChHHHHHHHHHHhcCCcEEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~~G~~V~~~d~  197 (394)
                      +|||=|||+||+.+.|.+...-..+|.+.+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            7999999999999999864344677776654

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=83.60  E-value=0.77  Score=38.02  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=23.7

Q ss_pred             eEEEEecChHHHHHHHHHHh---cCCcEEEEEcC
Q 016162          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  197 (394)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~---~~G~~V~~~d~  197 (394)
                      +|||=|||+||+.+.|.+..   .-..+|.+.+.
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd   36 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcC
Confidence            79999999999999998632   22567776654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=83.46  E-value=0.51  Score=35.91  Aligned_cols=35  Identities=11%  Similarity=0.038  Sum_probs=28.2

Q ss_pred             CCeEEEEecChHHHHHHHHHH--hcCCcEEEEEcCch
Q 016162          165 GQTVGVIGAGRIGSAYARMMV--EGFKMNLIYYDLYQ  199 (394)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la--~~~G~~V~~~d~~~  199 (394)
                      .+++.|||-|.+|-++|..++  ...|.+|..+.+..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            479999999999999997652  24588999887654

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=82.74  E-value=3  Score=34.87  Aligned_cols=98  Identities=11%  Similarity=0.067  Sum_probs=62.8

Q ss_pred             HHHHHHhcCCcEEEEEcCchhh---HHHHHHHhhhhhhhhcCCCCccccccCCHHHHhcccCEEEEcCCCChhhhhcccH
Q 016162          180 YARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (394)
Q Consensus       180 vA~~la~~~G~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lPlt~~t~~li~~  256 (394)
                      .+++| ...|.+|++=.-....   ..++|.        ..|     .....+.+++. ++|+|+-.-|.++        
T Consensus        22 ~vkkl-~~~G~~V~VE~gaG~~a~fsD~~Y~--------~aG-----a~i~~~~~~~~-~~diilkv~~p~~--------   78 (193)
T d1pjca2          22 SVRTL-VEAGHTVFIETQAGIGAGFADQDYV--------QAG-----AQVVPSAKDAW-SREMVVKVKEPLP--------   78 (193)
T ss_dssp             HHHHH-HTTTCEEEEETTTTGGGTCCHHHHH--------HHT-----CEEESSHHHHH-TSSEEECSSCCCG--------
T ss_pred             HHHHH-HHCCCEEEEEcCcccccCCCHHHHH--------hhc-----ceeeecccccc-ccceEEEeccCCH--------
Confidence            44555 5789999865332211   112221        112     22234666766 5899876655333        


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC
Q 016162          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (394)
Q Consensus       257 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~l~gaalDV~~~E  302 (394)
                      +.++.||+|+++|-.-..  ....+++++|.+.++...++|.....
T Consensus        79 ~e~~~lk~~~~li~~l~p--~~~~ell~~l~~~~it~~s~E~ipr~  122 (193)
T d1pjca2          79 AEYDLMQKDQLLFTYLHL--AAARELTEQLMRVGLTAIAYETVELP  122 (193)
T ss_dssp             GGGGGCCTTCEEEECCCG--GGCHHHHHHHHHHTCEEEEGGGCCCT
T ss_pred             HHHHhhhcCceEEEecCc--ccchHHHHHHHHcCCEEEEeeecccc
Confidence            457889999999988653  34568999999999999999877553

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=82.16  E-value=0.48  Score=40.16  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      .+|.|||-|..|-..|..| ...|.+|+++++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L-~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHL-RSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHH-HTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCCEEEEecCC
Confidence            3799999999999999998 57799999998753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.58  E-value=0.88  Score=36.12  Aligned_cols=37  Identities=8%  Similarity=0.007  Sum_probs=31.5

Q ss_pred             ccCCCeEEEE--ecChHHHHHHHHHHhcCCcEEEEEcCch
Q 016162          162 LLKGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (394)
Q Consensus       162 ~l~gktvGII--GlG~IG~~vA~~la~~~G~~V~~~d~~~  199 (394)
                      ..-++.+.|+  |-|.||-++|..| ..+|++|.+..+..
T Consensus        36 ~~~~~~vvi~d~ggg~ig~e~A~~l-a~~G~~Vtlv~~~~   74 (156)
T d1djqa2          36 KKIGKRVVILNADTYFMAPSLAEKL-ATAGHEVTIVSGVH   74 (156)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             cccCCceEEEecCCChHHHHHHHHH-HHcCCeEEEEecCC
Confidence            4457778887  8899999999998 69999999998765

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=81.56  E-value=1.1  Score=40.23  Aligned_cols=79  Identities=13%  Similarity=0.053  Sum_probs=46.7

Q ss_pred             cCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCC---CCccccccCCHHHHhcccC
Q 016162          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE---QPVTWKRASSMDEVLREAD  238 (394)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ell~~aD  238 (394)
                      -.||+|.|.| .|-||+.+++.| ...|.+|++..|+..+. ......+ +.......   .........++++++..+|
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~L-l~~G~~V~~~vR~~~~~-~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   85 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQL-LEHGYKVRGTARSASKL-ANLQKRW-DAKYPGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHH-HHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCcCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEeCCchhH-HHHHHhh-hccccccccEEEeccccchhhhhhhcccch
Confidence            4699999996 577999999987 57799999987765432 1111111 00000000   0000112345677889999


Q ss_pred             EEEEcC
Q 016162          239 VISLHP  244 (394)
Q Consensus       239 iV~l~l  244 (394)
                      +|+.+.
T Consensus        86 ~v~~~a   91 (342)
T d1y1pa1          86 GVAHIA   91 (342)
T ss_dssp             EEEECC
T ss_pred             hhhhhc
Confidence            887553

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.40  E-value=0.8  Score=37.84  Aligned_cols=95  Identities=17%  Similarity=0.061  Sum_probs=56.6

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHHh-----c
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----R  235 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~  235 (394)
                      .-.|.+|.|.| -|.+|....+. ++.+|++|++..++..+..  +       ++..|...... .....++..     .
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQl-ak~~Ga~Viat~~s~~k~~--~-------~~~lGa~~vi~-~~~~~~~~~~~~~~~   97 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSM-LAKRGYTVEASTGKAAEHD--Y-------LRVLGAKEVLA-REDVMAERIRPLDKQ   97 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCTTCHH--H-------HHHTTCSEEEE-CC---------CCSC
T ss_pred             CCCCCEEEEEeccchHHHHHHHH-HHHcCCceEEecCchHHHH--H-------HHhcccceeee-cchhHHHHHHHhhcc
Confidence            45688999999 69999999997 5899999999987765421  1       22223322211 111122221     2


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  273 (394)
                      ..|+|+-++..  +    .-...+..|+++..++.++-
T Consensus        98 gvD~vid~vgg--~----~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          98 RWAAAVDPVGG--R----TLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             CEEEEEECSTT--T----THHHHHHTEEEEEEEEECSC
T ss_pred             CcCEEEEcCCc--h----hHHHHHHHhCCCceEEEeec
Confidence            46677666541  1    12566777788888877753

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.35  E-value=0.65  Score=39.85  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHhcCCcEEEEEcCchh
Q 016162          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (394)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~~G~~V~~~d~~~~  200 (394)
                      +||++.|.|. |.||+++|+.| ...|++|...|+...
T Consensus         1 egK~vlITGas~GIG~a~a~~l-~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAF-RARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            4899999987 56999999998 588999999887654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=80.75  E-value=0.37  Score=39.62  Aligned_cols=94  Identities=13%  Similarity=0.063  Sum_probs=55.7

Q ss_pred             ccCCCeEEEEe-cChHHHHHHHHHHhcCCcEEEEEcCchhhHHHHHHHhhhhhhhhcCCCCccccccCCHHHH-----hc
Q 016162          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LR  235 (394)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~  235 (394)
                      ...|.+|.|-| .|.+|....+. |+.+|++|++..++.++..  +       ++..|......+. +...+.     -.
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQl-Ak~~Ga~Viat~~s~~k~~--~-------~~~lGad~vi~~~-~~~~~~~~~~~~~   89 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSM-LNKRGYDVVASTGNREAAD--Y-------LKQLGASEVISRE-DVYDGTLKALSKQ   89 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHH-HHHHTCCEEEEESSSSTHH--H-------HHHHTCSEEEEHH-HHCSSCCCSSCCC
T ss_pred             CCCCCEEEEeCCcchHHHHHHHH-HHHcCCceEEEecCHHHHH--H-------HHhhcccceEecc-chhchhhhcccCC
Confidence            34577899998 59999999998 5899999999988765421  1       2222322211100 000001     12


Q ss_pred             ccCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016162          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (394)
Q Consensus       236 ~aDiV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a  272 (394)
                      ..|+|+-++-  .++    -.+.+..++++..++.++
T Consensus        90 gvd~vid~vg--g~~----~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          90 QWQGAVDPVG--GKQ----LASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             CEEEEEESCC--THH----HHHHHTTEEEEEEEEECC
T ss_pred             CceEEEecCc--HHH----HHHHHHHhccCceEEEee
Confidence            3666666653  111    145677778888887775

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.47  E-value=2  Score=38.42  Aligned_cols=164  Identities=13%  Similarity=0.208  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChHHHHHHHHHHhc---CCc-------EE
Q 016162          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG---FKM-------NL  192 (394)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~---~G~-------~V  192 (394)
                      +|=-+++-+++.+|-                     .|+.|.+.++.|.|.|.-|-.+|+.+..+   .|+       ++
T Consensus         4 Ta~V~lAglinAlki---------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i   62 (294)
T d1pj3a1           4 TAAVALAGLLAAQKV---------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKI   62 (294)
T ss_dssp             HHHHHHHHHHHHHHH---------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTE
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccE
Confidence            455677777777762                     34578999999999999999999986322   122       48


Q ss_pred             EEEcCchhh---H---HHHHHHhhhhhhhhcCCCCccccccCCHHHHhc--ccCEEEEcCCCChhhhhcccHHHHh---c
Q 016162          193 IYYDLYQAT---R---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLA---T  261 (394)
Q Consensus       193 ~~~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~lPlt~~t~~li~~~~l~---~  261 (394)
                      +.+|+..--   +   ...+...|.    +..    ......+|+|+++  ..|+++-+.-    .-+++.++.++   .
T Consensus        63 ~lvD~~Glv~~~r~~~~~~~k~~~a----~~~----~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~  130 (294)
T d1pj3a1          63 WMFDKYGLLVKGRKAKIDSYQEPFT----HSA----PESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMAS  130 (294)
T ss_dssp             EEEETTEECBTTCSSCCCTTTGGGC----BCC----CSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHH
T ss_pred             EEEeCCCCccCCCCcccHHHHHHhh----ccc----cccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHh
Confidence            888874311   1   000111110    000    0011247888876  6787766542    24677887775   4


Q ss_pred             CCCCcEEEEcCCCcc---cCHHHHHHHHHcCCcceEEeeccCCCCC--CCC---ccccCCceEEcCCCC
Q 016162          262 MKKEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPY--MKP---GLSEMKNAIVVPHIA  322 (394)
Q Consensus       262 mk~gailIN~aRG~~---vde~aL~~aL~~g~l~gaalDV~~~EP~--~~~---~L~~~~nvilTPHia  322 (394)
                      |.+..++.=.|....   ...++.+++ .+|+...|.=-=|  .|.  .+-   .--+..|+++-|-|+
T Consensus       131 ~~~~PIIFaLSNPt~~~e~~~~~a~~~-t~grai~asGspf--~~v~~~~Gr~~~pnQ~NN~~iFPGig  196 (294)
T d1pj3a1         131 INERPVIFALSNPTAQAECTAEEAYTL-TEGRCLFASGSPF--GPVKLTDGRVFTPGQGNNVYIFPGVA  196 (294)
T ss_dssp             HCSSCEEEECCSSGGGCSCCHHHHHHH-TTTCCEEEESSCC--CCEECTTSCEECCEECCGGGTHHHHH
T ss_pred             cCCCcEEEEccCCCCcCCcCHHHHHhh-ccCceEeecCCcc--CCeEeCCCcEecCCCCceeccccchh
Confidence            569999999998654   234555543 4465444331111  111  010   112456888888554