Citrus Sinensis ID: 016166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRLTKECGMHLAKQGQMSEGV
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccHHHHHHHccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccEHHHHHccccEEEEEHHHHHHHHHHccHHHccccHHHHccccEEEEcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHHHHcccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccHHHcccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgymcdfcgdqrsivycrsdaaclclscdRNVHLANALSKRHSRTLLcercnsqpalVRCAEERVSLCqncdwighgtstsasshkrqtincysgcpsaselSSIWSFvldfpsggesacEQELGLmsitdnsiknswgpnedsisqnaagggveandvcdadksnvrvgatsvpginsttqnrdqihgsannpplpklccsatkdlafcedddlyedfnmdemdlnFENYEELFGVTLNHSeellenggieslfgtkdmsaadsnCQGAVAAegssaglvnamqpacsnaasadsimstktepilcftakqghsslsfsgltgdsnagdyqecdassmllmgeppwcppcpetsftsasRSKAVLRYKEKKKTRLTKECGMHLakqgqmsegv
Flexible Loop (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGtstsasshkrqTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVgatsvpginsttqnrDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPEtsftsasrskavlrykekkktrltkecgmhlakqgqmsegv
Low Complexity Region (SEG)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRLTKECGMHLAKQGQMSEGV
Disordered region (IsUnstruct)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGT*********QTINCYSGCPSASELSSIWSFVLDFPSGG***C***LGL***********************************************************************KLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLF************************************************PILCFTA************************************W***********************************************
Disordered Region (DISOPRED)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDW***********************************************************************ISQNAAGGGVEANDVCDADKSNVRVGAT**P*******************************LAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHS***L***************************************************************************************CDASSM************************AVLRYKEKKKTRLTKECGMHLAKQG*M****
Disordered Region (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHG***********TINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRLTKECGMH***********
Disordered Region (DISPRO)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD*********************************************N********N**************************NPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKD**************************************************************LTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRLTKECGMHLA*Q*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRLTKECGMHLAKQGQMSEGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
Q9SSE5	372	Zinc finger protein CONST	yes	no	0.802	0.849	0.530	1e-102
Q9LUA9	373	Zinc finger protein CONST	no	no	0.814	0.860	0.526	2e-95
Q9LJ44	364	Zinc finger protein CONST	no	no	0.799	0.865	0.314	7e-36
O23379	330	Putative zinc finger prot	no	no	0.276	0.330	0.504	9e-28
O22800	402	Zinc finger protein CONST	no	no	0.269	0.263	0.443	2e-26
Q9C7E8	433	Zinc finger protein CONST	no	no	0.319	0.290	0.414	2e-26
Q9C9F4	356	Putative zinc finger prot	no	no	0.276	0.306	0.455	2e-24
O82256	332	Zinc finger protein CONST	no	no	0.253	0.301	0.470	1e-22
Q940T9	362	Zinc finger protein CONST	no	no	0.228	0.248	0.422	5e-15
Q9SK53	294	Zinc finger protein CONST	no	no	0.269	0.360	0.383	4e-13

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/388 (53%), Positives = 252/388 (64%), Gaps = 72/388 (18%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query: 61  AEERVSLCQNCDWIGH---------GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
            EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct: 61  VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query: 112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
               G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct: 121 L--AGQSICEQELGMMNIDDD------GPTD--------------KKTCNEDKKDVLVGS 158

Query: 172 TSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENY 231
           +S+P  +S  Q +                 S+ KD+  CE DD Y +  MDE+D+  ENY
Sbjct: 159 SSIPETSSVPQGKS----------------SSAKDVGMCE-DDFYGNLGMDEVDMALENY 201

Query: 232 EELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNA 291
           EELFG   N SEEL  +GGI+SLF            +   A EG      N++QPA SN 
Sbjct: 202 EELFGTAFNPSEELFGHGGIDSLFH-----------KHQTAPEGG-----NSVQPAGSN- 244

Query: 292 ASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSML-LMGEPPWCPP 350
              DS MS+KTEPI+CF +K  HS++SFSG+TG+S+AGD+QEC ASS + L GEPPW PP
Sbjct: 245 ---DSFMSSKTEPIICFASKPAHSNISFSGVTGESSAGDFQECGASSSIQLSGEPPWYPP 301

Query: 351 CPETSFT---SASRSKAVLRYKEKKKTR 375
             + +     S +R+ AV+RYKEKKK R
Sbjct: 302 TLQDNNACSHSVTRNNAVMRYKEKKKAR 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/384 (52%), Positives = 242/384 (63%), Gaps = 63/384 (16%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query: 61  AEERVSLCQNCDWIGH--GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
           ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct: 61  SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query: 117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPG 176
           ESACEQ +GLM+I ++                  G G         +KS V+      P 
Sbjct: 121 ESACEQGMGLMTIDED------------------GTG---------EKSGVQKINVEQPE 153

Query: 177 INSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFG 236
            +S  Q  D      N+        S  K+L  CEDD    +   DE+DL  ENYEELFG
Sbjct: 154 TSSAAQGMDHSSVPENS--------SMAKELGVCEDD-FNGNLISDEVDLALENYEELFG 204

Query: 237 VTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADS 296
              N S  L E+GGI SLF   +            A EGS        QPA SN ASADS
Sbjct: 205 SAFNSSRYLFEHGGIGSLFEKDE------------AHEGS------MQQPALSNNASADS 246

Query: 297 IMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSM-LLMGEP-PWCPPCPET 354
            M+ +TEPI+C+++K  HS++SFSG+TG+SNAGD+Q+C ASSM  L  EP PWC P  + 
Sbjct: 247 FMTCRTEPIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSREPQPWCHPTAQD 306

Query: 355 SFTSA---SRSKAVLRYKEKKKTR 375
              S+   +R+ AV+RYKEKKK R
Sbjct: 307 IIASSHATTRNNAVMRYKEKKKAR 330

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score =  151 bits (382), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 120/381 (31%), Positives = 180/381 (47%), Gaps = 66/381 (17%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC
Sbjct: 1   MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            +E+VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P       
Sbjct: 61  LDEKVSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVS----- 113

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
               GL+S                       G    ND+   + +      + VP   S 
Sbjct: 114 ----GLLS--------------------PFVGSFPLNDL---NNTMFDTAYSMVPHNISY 146

Query: 181 TQN-RDQI-HGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVT 238
           TQN  D +   S  +   P +     +      ++DL E  N+D+  LNF+  +++ G +
Sbjct: 147 TQNFSDNLSFFSTESKGYPDMVLKLEEG-----EEDLCEGLNLDDAPLNFDVGDDIIGCS 201

Query: 239 LN-HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSI 297
              H E          +  T   S   SN     A E S  G             + ++ 
Sbjct: 202 SEVHIEPDHTVPNCLLIDKTNTSSFTGSNFTVDKALEASPPG----------QQMNINTG 251

Query: 298 MSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFT 357
           +     P+L     Q H SL+   +TG++NA DYQ+C  S   +M E PW     ET+F 
Sbjct: 252 LQLPLSPVL---FGQIHPSLN---ITGENNAADYQDCGMSPGFIMSEAPW-----ETNFE 300

Query: 358 SA---SRSKAVLRYKEKKKTR 375
            +   +R++A LRYKEKK  R
Sbjct: 301 VSCPQARNEAKLRYKEKKLKR 321

Arabidopsis thaliana (taxid: 3702)

>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=3 SV=2

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 2/111 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C
Sbjct: 1   MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
             E VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+
Sbjct: 61  MNENVSLCQGCQWT--ASNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE 109

Arabidopsis thaliana (taxid: 3702)

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 77/106 (72%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct: 12  CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVL 110
           + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   L
Sbjct: 72  LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDL 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 82/128 (64%), Gaps = 2/128 (1%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct: 9   CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
           + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +    Q  
Sbjct: 69  LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDEENQVP 126

Query: 125 GLMSITDN 132
            +  + DN
Sbjct: 127 MMAMMMDN 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct: 10  MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
            + ++ LC  C+   HG  +  S H+R+ + CY+GCP A + + +W F V+D
Sbjct: 70  FDHKMFLCHGCNDKFHGGGS--SEHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct: 12  LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
           R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct: 72  RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 50/90 (55%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
          +CD C    + +YCR DAA LCLSCD  VH AN L+ RH+R  +CE C   PA V C  +
Sbjct: 5  LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKAD 64

Query: 64 RVSLCQNCDWIGHGTSTSASSHKRQTINCY 93
            +LC  CD   H  +  A  H+R  +  +
Sbjct: 65 AAALCVTCDRDIHSANPLARRHERVPVTPF 94

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD C    + ++CR+DAA LC  CD  +H AN L+ RH R  LCE C   PA V C  +
Sbjct: 7   LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFV 109
             +LC  CD   H  +  +  H+R  I   Y     A   SS  +FV
Sbjct: 67  AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV 113

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
255567234	414	transcription factor, putative [Ricinus	0.921	0.876	0.753	1e-148
356547575	409	PREDICTED: zinc finger protein CONSTANS-	0.931	0.897	0.715	1e-148
359485854	415	PREDICTED: zinc finger protein CONSTANS-	0.944	0.896	0.701	1e-147
356577552	446	PREDICTED: zinc finger protein CONSTANS-	0.931	0.822	0.718	1e-147
449444452	415	PREDICTED: zinc finger protein CONSTANS-	0.939	0.891	0.663	1e-139
224068779	379	predicted protein [Populus trichocarpa]	0.840	0.873	0.683	1e-135
302398767	409	COL domain class transcription factor [M	0.923	0.889	0.661	1e-131
224131908	379	predicted protein [Populus trichocarpa]	0.888	0.923	0.686	1e-130
356553042	411	PREDICTED: zinc finger protein CONSTANS-	0.911	0.873	0.702	1e-129
357462477	465	Zinc finger protein CONSTANS-LIKE protei	0.926	0.784	0.671	1e-128

>gi|255567234|ref|XP_002524598.1| transcription factor, putative [Ricinus communis] gi|223536151|gb|EEF37806.1| transcription factor, putative [Ricinus communis]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/369 (75%), Positives = 315/369 (85%), Gaps = 6/369 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTLLCERCNSQPAL+RC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS-GGESA 119
           A+ER+SLCQ CDW+ HG S S+S+HKRQTINCY+GCPSASELSS+WSFVLDFPS  GES 
Sbjct: 61  ADERLSLCQKCDWMVHGNSNSSSTHKRQTINCYTGCPSASELSSLWSFVLDFPSVDGEST 120

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CEQELGLMSI ++S  N+WGP + +ISQN +G     N+ C+  KS+  VG +S P +  
Sbjct: 121 CEQELGLMSIAEDSSTNTWGPPDKTISQNVSGAAA-VNNACEIPKSSGCVGNSSAPQL-- 177

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
              N D   GSA N PLPKLCC  TK  A CE DDLYEDFNMDE+DLN ENYEELFG+ L
Sbjct: 178 MPNNLDHPAGSA-NAPLPKLCCPGTKGPALCE-DDLYEDFNMDEVDLNLENYEELFGIAL 235

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMS 299
           N SEEL ENGGI+SLFG KDMSAADSNCQGAVAAEGSSAGLVNA+QPACSNAASADS+MS
Sbjct: 236 NDSEELFENGGIDSLFGMKDMSAADSNCQGAVAAEGSSAGLVNAVQPACSNAASADSMMS 295

Query: 300 TKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSA 359
            KTEPILCFTA+ GHS+LSFSGLTG+S+AGDYQ+C ASSM LMGEPPWCPPCPE+SF+SA
Sbjct: 296 AKTEPILCFTARPGHSNLSFSGLTGESSAGDYQDCGASSMFLMGEPPWCPPCPESSFSSA 355

Query: 360 SRSKAVLRY 368
           +R+ AV+RY
Sbjct: 356 NRNDAVMRY 364

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547575|ref|XP_003542186.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/376 (71%), Positives = 304/376 (80%), Gaps = 9/376 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVLD  +  ES C
Sbjct: 61  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLDIAAISESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K+   P E    QN +G   E  D    DKS   VG +S+P  +S 
Sbjct: 121 EQELGLMSINEN--KSVGVPPE---GQNVSGSD-EVTDQPALDKS--LVGTSSMPESSSK 172

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ    AN   L KL C ATK  A CE+D+LY+DFNMDE+DLN ENYEELFG+ L+
Sbjct: 173 PRILDQPARPANEC-LSKLYCPATKFPALCENDNLYDDFNMDEVDLNLENYEELFGMALS 231

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL ENGGI+SLFGTKDMSA D +C+ A+AAEGSS G VN MQPACSNAASADSI+ST
Sbjct: 232 HSEELFENGGIDSLFGTKDMSAGDFSCEDAIAAEGSSVGQVNVMQPACSNAASADSILST 291

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT +Q  S+LSFSG+TGDS+AGDYQ+C ASSMLLMGEPPW  PCPE S  SA+
Sbjct: 292 KTEPILCFTGRQAQSNLSFSGVTGDSSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSAN 351

Query: 361 RSKAVLRYKEKKKTRL 376
           RS AV+RYKEKKKTR+
Sbjct: 352 RSNAVMRYKEKKKTRM 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485854|ref|XP_002264506.2| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Vitis vinifera] gi|296085061|emb|CBI28476.3| unnamed protein product [Vitis vinifera]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/375 (70%), Positives = 302/375 (80%), Gaps = 3/375 (0%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRSIVYCRSDAA LCLSCDR+VH ANALS+RHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGEQRSIVYCRSDAASLCLSCDRHVHSANALSRRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW GHG ST+ SSHK++TINCYSGCPS+  LS++W FVLD PS G S C
Sbjct: 61  IEEKISLCQNCDWTGHGGSTTTSSHKKETINCYSGCPSSEGLSTMWPFVLDLPSTGNSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQ L LM + + S  NSWGP  +S  Q+A+   VE ND  + DKS++ +G++SVP +NS 
Sbjct: 121 EQGLSLMCLNETSEMNSWGPPGNSSRQDAS-LTVEVNDANNVDKSSILIGSSSVPELNSP 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
           +Q  DQ  GSA +  LPKL C  T DL FCEDD LYEDFNMDE+DLN ENYEELFGV L+
Sbjct: 180 SQKLDQPSGSA-DLTLPKLLCPGTDDLGFCEDDSLYEDFNMDEVDLNLENYEELFGVALS 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSE+L ENGGI+SLFG  D S ADS+CQGAV AEG S GL NA+QP  SNAASADSIMS+
Sbjct: 239 HSEQLFENGGIDSLFGKMDTSGADSHCQGAVIAEG-SVGLANAVQPTYSNAASADSIMSS 297

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT KQ HSSLSFSGLTG+S+AGDYQ+C AS   LMGEPPWCPP PE+S  S S
Sbjct: 298 KTEPILCFTGKQAHSSLSFSGLTGESSAGDYQDCGASPTFLMGEPPWCPPGPESSLPSTS 357

Query: 361 RSKAVLRYKEKKKTR 375
           RS AV+RY+EKKK R
Sbjct: 358 RSSAVMRYREKKKNR 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577552|ref|XP_003556888.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/376 (71%), Positives = 305/376 (81%), Gaps = 9/376 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 38  MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 97

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVL+  +  ES C
Sbjct: 98  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTC 157

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K    P ED   QN +G   E  D+   +KS   VGA+ +P  +S 
Sbjct: 158 EQELGLMSINEN--KCVGVPPED---QNVSGSD-EVTDLPALNKS--LVGASLMPESSSE 209

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
               DQ  G  N   LPKL C ATK  A  EDD+LY+DFNMDE+DL+ ENYEELFG+ L+
Sbjct: 210 PCILDQPAGPTNEC-LPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALS 268

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL ENGGI+SLFGTK MSA DSNCQ A+AAEGSS G VNAMQPACSNAASADSI+ST
Sbjct: 269 HSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAEGSSVGQVNAMQPACSNAASADSILST 328

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT +Q  S+LSFSG+TG+S+AGDYQ+C ASSMLLMGEPPW  PCPE S  SA+
Sbjct: 329 KTEPILCFTGRQTQSNLSFSGVTGESSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSAN 388

Query: 361 RSKAVLRYKEKKKTRL 376
           RS AV+RYKEKKKTR+
Sbjct: 389 RSNAVMRYKEKKKTRM 404

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444452|ref|XP_004139988.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus] gi|449475645|ref|XP_004154511.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/377 (66%), Positives = 293/377 (77%), Gaps = 7/377 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MG+MCDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RH+RTLLCERC+ QP+ VRC
Sbjct: 1   MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASS-HKRQTINCYSGCPSASELSSIWSFVLDFPSGGESA 119
            EERVSLCQNCDW GHG+ST ASS HKRQTINCYSGCPSA+ELS IWSFVLD PS  + A
Sbjct: 61  IEERVSLCQNCDWTGHGSSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVND-A 119

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CE+ELGLMSI +  +  +W P+E++  Q   G   EA+DVC  +KSNV VG++S+ G   
Sbjct: 120 CEKELGLMSIAETDLTGAWSPSENNAGQRMPGS-TEASDVCSREKSNVLVGSSSLIGSRP 178

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFC-EDDDLYEDFNMDEMDLNFENYEELFGVT 238
            T ++       +N  LPK CC  TK   FC EDDDLY++F+MDEMDLN ENYE+LF ++
Sbjct: 179 HTSDQPV---ELDNVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEDLFSMS 235

Query: 239 LNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIM 298
           LNHSEE  ENGGI+S F  K +S  DS    AV AEGSS G+V  MQPA SN ASADS+M
Sbjct: 236 LNHSEEFFENGGIDSFFEAKGLSFEDSVSHSAVVAEGSSMGVVQQMQPAYSNGASADSVM 295

Query: 299 STKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTS 358
           STKTEPILCF ++Q  S +SFSGLTG+S+AGD+Q+C ASSMLLMGEPPWC P  E+SF S
Sbjct: 296 STKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPS 355

Query: 359 ASRSKAVLRYKEKKKTR 375
             R+ AV RYKEKKKTR
Sbjct: 356 TDRNSAVQRYKEKKKTR 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068779|ref|XP_002302823.1| predicted protein [Populus trichocarpa] gi|222844549|gb|EEE82096.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/370 (68%), Positives = 283/370 (76%), Gaps = 39/370 (10%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAACLCLSCD+ VH ANALSKRHSRTLLCERCNSQPALVR 
Sbjct: 1   MGYICDFCGEQRSMVYCRSDAACLCLSCDQIVHSANALSKRHSRTLLCERCNSQPALVRR 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EER+SLCQNCDW+G+G+STSAS+HKRQTINCY GCPS SELSS W F+LD PSGG S C
Sbjct: 61  VEERISLCQNCDWMGYGSSTSASTHKRQTINCYFGCPSVSELSSKWPFILDSPSGGGSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+WGP E++I  NA+G                 VGA+SVP  +S 
Sbjct: 121 EQELGLMSIAENSTKNTWGPTENTICHNASG----------------IVGASSVPESSSV 164

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +N DQ   S N+  LPK+C           D DLYEDFNM EMDLN ENYEELFGVTLN
Sbjct: 165 PKNLDQPTRSPNS-SLPKVC-----------DADLYEDFNMAEMDLNLENYEELFGVTLN 212

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           +SEEL ENGGI+SLFGTKDM   DSN            GLVN +QP CSNA S DS++S+
Sbjct: 213 NSEELFENGGIDSLFGTKDMPIVDSN-----------FGLVNTIQPTCSNAPSTDSMISS 261

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFTAKQGHSSLSFSGLTG+SNAGDYQ+C ASSMLLMGEP WCPPC E+   SA+
Sbjct: 262 KTEPILCFTAKQGHSSLSFSGLTGESNAGDYQDCGASSMLLMGEPSWCPPCLESPLPSAN 321

Query: 361 RSKAVLRYKE 370
           RS AV RY E
Sbjct: 322 RSDAVKRYME 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398767|gb|ADL36678.1| COL domain class transcription factor [Malus x domestica]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/375 (66%), Positives = 292/375 (77%), Gaps = 11/375 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCD+C  QRS+V+CRSDAACLCLSCDRNVH ANALS+RH RTL+CERCNSQPALVRC
Sbjct: 1   MGYMCDYCQVQRSMVHCRSDAACLCLSCDRNVHSANALSRRHLRTLICERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EERVSLCQNCDW+GH  STSAS HKRQT+NCYSGCPS++ELSSIWSFV D PS GESAC
Sbjct: 61  TEERVSLCQNCDWMGHQASTSASGHKRQTLNCYSGCPSSAELSSIWSFVSDLPSNGESAC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQE+GLMSI +NS ++ W   E +  Q+A+G   E N     +KS + VG++SVP  +  
Sbjct: 121 EQEMGLMSIAENSTRSEWSQTESNTRQSASGAD-EVNPAHSMEKSGILVGSSSVPERSHA 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
                Q+ GS  N  LPKL     K     EDDDLY+D +MDEM+LN ENY+ELFGV+LN
Sbjct: 180 RHVVGQLSGSV-NASLPKLYSHGGKGTGLPEDDDLYDDLDMDEMELNLENYDELFGVSLN 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL +NGGI+SLFG K++S    +CQ AVAAEGSS GL NA QPACSNAASADS+MST
Sbjct: 239 HSEELFKNGGIDSLFGAKNVS---RDCQDAVAAEGSSFGLGNAPQPACSNAASADSVMST 295

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KT+P++CF AKQ HS+LSFSG+TG+S+AGD Q+C ASS       PW PPCPE+S  SA+
Sbjct: 296 KTDPVICFPAKQAHSNLSFSGITGESSAGDCQDCGASST------PWYPPCPESSMQSAN 349

Query: 361 RSKAVLRYKEKKKTR 375
           RS AV+RYKEKKK R
Sbjct: 350 RSNAVMRYKEKKKAR 364

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131908|ref|XP_002321208.1| predicted protein [Populus trichocarpa] gi|222861981|gb|EEE99523.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/389 (68%), Positives = 305/389 (78%), Gaps = 39/389 (10%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAA LCLSCDRNVH ANALSKRHSRTLLCERCNSQPALVRC
Sbjct: 1   MGYVCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSKRHSRTLLCERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           AEER+SLCQNCDWIGHGTSTSAS+H+RQTIN YSGCPSASELSSIWSFVLDFPS GES C
Sbjct: 61  AEERISLCQNCDWIGHGTSTSASTHRRQTINSYSGCPSASELSSIWSFVLDFPSRGESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS  +SWGP E++I QNA+ G VE ND  +  KS V +G++S+P  +S 
Sbjct: 121 EQELGLMSIAENSTTDSWGPTENTIGQNAS-GVVEVNDRREIAKSGVWLGSSSIPESSSV 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
             N DQ   SAN   LPK                   DFNMDEMDL+ ENYEELFGVTLN
Sbjct: 180 PNNLDQTTRSANT-SLPK-------------------DFNMDEMDLSLENYEELFGVTLN 219

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           +SEELLENGGI+SLFGTKDMS                  +VNA+QPA SNAASADS+MS 
Sbjct: 220 NSEELLENGGIDSLFGTKDMS------------------VVNAVQPASSNAASADSMMSN 261

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT KQGHSSLSFSGL  +S+A DYQ+C ASSMLLMGEPPWCPPCPE+ F+SA+
Sbjct: 262 KTEPILCFTEKQGHSSLSFSGLNVESSAADYQDCGASSMLLMGEPPWCPPCPESPFSSAN 321

Query: 361 RSKAVLRYKEKKKTRLTKECGMHLAKQGQ 389
           RS AV+RYKEKKKTR+ ++   + +++ +
Sbjct: 322 RSDAVMRYKEKKKTRMFEKKVRYASRKAR 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553042|ref|XP_003544867.1| PREDICTED: zinc finger protein CONSTANS-LIKE 10-like [Glycine max]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/370 (70%), Positives = 297/370 (80%), Gaps = 11/370 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTL+CERCNSQPA VRC
Sbjct: 1   MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            +E++SLCQNCDW+GHGTS S+S+HKRQ+INCYSGCPSA+E SSIWSF LD PS GE AC
Sbjct: 61  VDEKISLCQNCDWLGHGTSPSSSTHKRQSINCYSGCPSAAEFSSIWSFFLDIPSMGE-AC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+W   E    QN +G   E  D+    KS    G +SVP  +S 
Sbjct: 120 EQELGLMSINENSNKNAWASPE---GQNVSGSA-EVTDLPSKGKS--WAGTSSVPESSSE 173

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ  G AN   +PKL C   K     EDDDLY+DF MDE+DL  ENYEELFG+ L+
Sbjct: 174 PRILDQPPGPANE-CMPKLYCPGKKVSGIYEDDDLYDDFIMDEVDLQLENYEELFGMALS 232

Query: 241 HSEELLENGGIESLFGTKDMSAA--DSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIM 298
           HSEEL ENGGI SLF TKDMSA+  DS+CQGAVAAEGSSA LVNA+QPACSNAASADS+M
Sbjct: 233 HSEELFENGGINSLFETKDMSASAGDSHCQGAVAAEGSSAELVNAIQPACSNAASADSMM 292

Query: 299 STKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTS 358
           STKTEPI+CFTA+Q  S++SFSG+T DS  GDYQ+C ASSMLLMGEPPWCPPCPE+S  S
Sbjct: 293 STKTEPIVCFTARQSLSNISFSGVTKDS-VGDYQDCGASSMLLMGEPPWCPPCPESSLHS 351

Query: 359 ASRSKAVLRY 368
           A+RS AV+RY
Sbjct: 352 ANRSNAVMRY 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462477|ref|XP_003601520.1| Zinc finger protein CONSTANS-LIKE protein [Medicago truncatula] gi|355490568|gb|AES71771.1| Zinc finger protein CONSTANS-LIKE protein [Medicago truncatula]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/378 (67%), Positives = 290/378 (76%), Gaps = 13/378 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH AN L++RHSRTLLCERC+SQPALVRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           +EE+VSLCQNCDW+GHG STS S+HKRQTINCYSGCPS++ELSSIWSFVLD PS  E+ C
Sbjct: 61  SEEKVSLCQNCDWLGHGNSTS-SNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELG MSI +N  +++W    D  +QN +    +A D+ D DKS    G +S+P  +  
Sbjct: 120 EQELGFMSINEN--RSAW---VDPKNQNVSDSD-KATDLPDLDKS--FAGTSSMPESSKE 171

Query: 181 TQNRDQIHGSANNPPLPKLCCSATK-DLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
            +  D+  GS N   +PKL C AT    A  +DDDLY DF+MDEMD+N ENY+ELFG+ L
Sbjct: 172 PRMLDRPDGSTNEC-VPKLYCPATNCREASDDDDDLYGDFDMDEMDINMENYDELFGMAL 230

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMS 299
            HSEEL ENGG  SLFG K MSA DSNCQ A AAEGSS G VNA QPACS AASADSI+S
Sbjct: 231 THSEELFENGGFNSLFGAKAMSAGDSNCQDANAAEGSSIGHVNAAQPACSTAASADSILS 290

Query: 300 TKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPET--SFT 357
           TKTEP LC TAKQ  SSLSFSG+  D  AGDYQ+C ASSMLLMGEPPW   CPE      
Sbjct: 291 TKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQ 350

Query: 358 SASRSKAVLRYKEKKKTR 375
           SA+R  AV+RYKEKKKTR
Sbjct: 351 SANRCSAVMRYKEKKKTR 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2164718	373	BBX8 "B-box domain protein 8"	0.401	0.423	0.660	8.2e-85
TAIR|locus:2091082	372	COL9 "CONSTANS-like 9" [Arabid	0.411	0.435	0.601	2e-56
TAIR|locus:2129860	330	BBX9 "B-box domain protein 9"	0.271	0.324	0.518	3.3e-47
TAIR|locus:2088748	364	BBX10 "B-box domain protein 10	0.279	0.302	0.482	7.5e-42
TAIR|locus:2199262	356	BBX27 "B-box domain protein 27	0.276	0.306	0.455	4.2e-37
TAIR|locus:2010504	433	BBX13 "B-box domain protein 13	0.342	0.311	0.412	3e-33
TAIR|locus:2051104	402	BBX12 "B-box domain protein 12	0.299	0.293	0.416	1.3e-32
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.253	0.301	0.470	5.9e-29
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.284	0.380	0.373	3.8e-17
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.355	0.394	0.375	1.3e-16

TAIR|locus:2164718 BBX8 "B-box domain protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 107/162 (66%), Positives = 125/162 (77%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query:    61 AEERVSLCQNCDWIGHG--TSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
             ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct:    61 SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query:   117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEAND 158
             ESACEQ +GLM+I ++      G  + ++ Q       +  D
Sbjct:   121 ESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMD 162

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2091082 COL9 "CONSTANS-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 116/193 (60%), Positives = 137/193 (70%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query:    61 AEERVSLCQNCDWIGHG---------TSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
              EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct:    61 VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query:   112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
                 G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct:   121 L--AGQSICEQELGMMNIDDD------GPTDKK--------------TCNEDKKDVLVGS 158

Query:   172 TSVPGINSTTQNR 184
             +S+P  +S  Q +
Sbjct:   159 SSIPETSSVPQGK 171

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP;RCA

TAIR|locus:2129860 BBX9 "B-box domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 3.3e-47, Sum P(3) = 3.3e-47
 Identities = 57/110 (51%), Positives = 78/110 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C  E 
Sbjct:     5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS 114
             VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+ PS
Sbjct:    65 VSLCQGCQWTA--SNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE-PS 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2088748 BBX10 "B-box domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 54/112 (48%), Positives = 79/112 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC +E+
Sbjct:     5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGG 116
             VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P  G
Sbjct:    65 VSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG 114

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2199262 BBX27 "B-box domain protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 4.2e-37, Sum P(3) = 4.2e-37
 Identities = 51/112 (45%), Positives = 75/112 (66%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct:    10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query:    61 AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
              + ++ LC  C+   HG  +S   H+R+ + CY+GCP A + + +W F V+D
Sbjct:    70 FDHKMFLCHGCNDKFHGGGSS--EHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2010504 BBX13 "B-box domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 59/143 (41%), Positives = 94/143 (65%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct:     9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +   E ++
Sbjct:    69 LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDE-ENQV 125

Query:   125 GLMSIT-DN-SIK-NSW--GPNE 142
              +M++  DN  ++ +SW  G NE
Sbjct:   126 PMMAMMMDNFGMQLDSWVLGSNE 148

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2051104 BBX12 "B-box domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 50/120 (41%), Positives = 82/120 (68%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct:    12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   +D     +   E EL
Sbjct:    72 LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWG--IDLKGKKKEDDEDEL 129

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 48/102 (47%), Positives = 69/102 (67%)

Query:     4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
             +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct:    12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query:    64 RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
             R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct:    72 RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
 Identities = 43/115 (37%), Positives = 58/115 (50%)

Query:     4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
             +CD C    + ++CR+DAA LC  CD  +H AN L+ RH R  LCE C   PA V C  +
Sbjct:     7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query:    64 RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFVLDFPSGGE 117
               +LC  CD   H  +  +  H+R  I   Y     A   SS  +FV +   GG+
Sbjct:    67 AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDE--DGGD 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 56/149 (37%), Positives = 70/149 (46%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C      VYCR+D+A LC SCD  VH AN L+ RH R  +C+ C   PA   C  + 
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTI---NCYSGCPSASELSSIWSFVLDFPS----GGE 117
              SLC  CD   H  +  A  H+R  I   + YS   +A+   S  + V D  +    G E
Sbjct:    72 ASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATN-HSCETTVTDPENRLVLGQE 130

Query:   118 SACEQELGLMS-ITDNSIKNSWGPNEDSI 145
                E E    S +  NS KNS   N  SI
Sbjct:   131 EEDEDEAEAASWLLPNSGKNSGNNNGFSI 159

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SSE5	COL9_ARATH	No assigned EC number	0.5309	0.8020	0.8494	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	3e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	3e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	6e-04

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
           CD  GD+ +  +C    A LC +CD   H      + H+  LL
Sbjct: 5  KCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
          +CD  G++   ++C +D A LC+ CD +VH        H R  L
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI 90
          LC+    +P  + C  +R  LC +CD   H      S H+R  +
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	97.53
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.3
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.07
smart00336	42	BBOX B-Box-type zinc finger.	96.79
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.78
smart00336	42	BBOX B-Box-type zinc finger.	96.13
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.9
KOG4367	699	consensus Predicted Zn-finger protein [Function un	94.68

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=97.53  E-value=4.1e-05  Score=56.68  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=21.8

Q ss_pred             hhHHHHHhHhhhhhccccccccee
Q 016166          361 RSKAVLRYKEKKKTRLTKECGMHL  384 (394)
Q Consensus       361 r~~a~~RYkeKkk~R~~~k~~~~~  384 (394)
                      |..+++||+|||++|+|+|++.|-
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~   24 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYE   24 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcc
Confidence            678999999999999999998764

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.30  E-value=0.00015  Score=49.99  Aligned_cols=38  Identities=32%  Similarity=0.768  Sum_probs=33.5

Q ss_pred             cccccCCCCceeeccCCccccccccccCCcCCCCCCCCCccccc
Q 016166           47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (394)
Q Consensus        47 LCd~C~s~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRvpl   90 (394)
                      +|+.|..+++.+||..|.+.+|..|++.+|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6888888899999999999999999988764      7888775

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.07  E-value=0.00038  Score=47.88  Aligned_cols=39  Identities=38%  Similarity=0.809  Sum_probs=33.7

Q ss_pred             CCCCccCCCCeeEEecCCccccccccccccccccchhhccccccc
Q 016166            3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (394)
Q Consensus         3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv~L   47 (394)
                      .+|+.++.+++.+||..|.+.+|..|+...|.      .|.+++|
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36999998899999999999999999988774      7777664

>smart00336 BBOX B-Box-type zinc finger

Probab=96.79  E-value=0.0011  Score=46.21  Aligned_cols=41  Identities=29%  Similarity=0.545  Sum_probs=34.8

Q ss_pred             ccccccccCCCCceeeccCCccccccccccCCcCCCCCCCCCccccc
Q 016166           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (394)
Q Consensus        44 Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRvpl   90 (394)
                      |..+|..|...++.+||..|...+|..|....|      +.|.++||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            567899999899999999999999999997755      46777664

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.78  E-value=0.00057  Score=48.30  Aligned_cols=41  Identities=27%  Similarity=0.525  Sum_probs=34.6

Q ss_pred             ccccccccCCCCceeeccCCccccccccccCCcCCCCCCCCCccccc
Q 016166           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (394)
Q Consensus        44 Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRvpl   90 (394)
                      +.++|..|...++.+||..|...||..|....|..      |..+||
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            34689999998899999999999999999998763      887775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.13  E-value=0.0044  Score=43.14  Aligned_cols=39  Identities=36%  Similarity=0.718  Sum_probs=33.0

Q ss_pred             CCCCccCCCCeeEEecCCccccccccccccccccchhhccccccc
Q 016166            3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (394)
Q Consensus         3 ~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv~L   47 (394)
                      ..|..++..++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5799999889999999999999999998766      46666553

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.90  E-value=0.0051  Score=43.41  Aligned_cols=40  Identities=18%  Similarity=0.337  Sum_probs=33.5

Q ss_pred             CCCCCccCCCCeeEEecCCccccccccccccccccchhhccccccc
Q 016166            2 GYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (394)
Q Consensus         2 ~~lCd~C~~a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv~L   47 (394)
                      ...|..+...++.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4679999998999999999999999999998854      766553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=94.68  E-value=0.0092  Score=62.58  Aligned_cols=76  Identities=18%  Similarity=0.433  Sum_probs=60.5

Q ss_pred             CCCccCCC--CeeEEecCCccccccccccccccccchhhccccccc----------------ccccCCCCceeeccCCcc
Q 016166            4 MCDFCGDQ--RSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL----------------CERCNSQPALVRCAEERV   65 (394)
Q Consensus         4 lCd~C~~a--~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv~L----------------Cd~C~s~PA~v~C~~D~a   65 (394)
                      .|.+|+++  .|.|+|..+..+.|.-|..+.|-+-.-..+|.-++-                |.-++-..-..||..|++
T Consensus       164 kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck~  243 (699)
T KOG4367|consen  164 KCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKM  243 (699)
T ss_pred             hhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecCC
Confidence            58999987  489999999999999999999988666667765442                444444446799999999


Q ss_pred             ccccccccCCcCCC
Q 016166           66 SLCQNCDWIGHGTS   79 (394)
Q Consensus        66 sLC~~CD~~~HsAN   79 (394)
                      ++|-.|-..+.++|
T Consensus       244 pvc~~clee~khs~  257 (699)
T KOG4367|consen  244 PVCYQCLEEGKHSS  257 (699)
T ss_pred             hHHHHHHHhhcccc
Confidence            99999998764444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.33
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.52
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	91.68
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	90.91
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	90.31
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	87.63
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	87.45
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	86.99
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	83.83
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	80.64

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.33  E-value=2.2e-07  Score=75.46  Aligned_cols=84  Identities=18%  Similarity=0.445  Sum_probs=67.1

Q ss_pred             CCCCCccCC---CCeeEEecCCccccccccccccccccchhhccccc-c---------cccccCCCCceeeccCCccccc
Q 016166            2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT-L---------LCERCNSQPALVRCAEERVSLC   68 (394)
Q Consensus         2 ~~lCd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsaN~La~RH~Rv-~---------LCd~C~s~PA~v~C~~D~asLC   68 (394)
                      +..|++|..   .+|+.+|..+.+.||..|...+|..+...++|.++ +         +|+.+...+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            357999984   68999999999999999999999877766788765 2         3666555568899999999999


Q ss_pred             ccccc-CCcCCCCCCCCCcccccc
Q 016166           69 QNCDW-IGHGTSTSASSHKRQTIN   91 (394)
Q Consensus        69 ~~CD~-~~HsAN~la~rHqRvpl~   91 (394)
                      ..|.. ..|.      .|..+||.
T Consensus        83 ~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             HHHHHHTTTS------SSCBCCCC
T ss_pred             hhcCCCCCcC------CCCeecCC
Confidence            99986 4554      46666653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.52  E-value=0.011  Score=47.41  Aligned_cols=43  Identities=28%  Similarity=0.571  Sum_probs=36.9

Q ss_pred             ccccccCC---CCceeeccCCccccccccccCCcCCCCCCCCCccc
Q 016166           46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (394)
Q Consensus        46 ~LCd~C~s---~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRv   88 (394)
                      ..|++|..   .+|+.+|..|..+||..|....|..+....+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            57999984   57999999999999999998888777667788876

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=91.68  E-value=0.066  Score=37.95  Aligned_cols=44  Identities=23%  Similarity=0.538  Sum_probs=34.7

Q ss_pred             ccccccccccCCCCceeeccCCccccccccccCCcCCCCCCCCCcccccc
Q 016166           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (394)
Q Consensus        42 H~Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRvpl~   91 (394)
                      ..|...|..+...+-.+||..|...+|..|....|.      .|..+||.
T Consensus         3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~   46 (50)
T 2yvr_A            3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE   46 (50)
T ss_dssp             CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred             CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence            455667888877788999999999999999875553      67776665

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=90.91  E-value=0.096  Score=38.74  Aligned_cols=45  Identities=16%  Similarity=0.333  Sum_probs=34.2

Q ss_pred             cccccccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166           41 RHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (394)
Q Consensus        41 RH~Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~   91 (394)
                      +..+..+|..+...+..+||..|...+|..|... .|.      .|..+||.
T Consensus         4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   49 (64)
T 2d8u_A            4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   49 (64)
T ss_dssp             CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred             CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHH
Confidence            4455667888877788999999999999999864 453      46655554

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=90.31  E-value=0.09  Score=41.29  Aligned_cols=44  Identities=27%  Similarity=0.559  Sum_probs=36.1

Q ss_pred             cccccccCC---CCceeeccCCccccccccccCCcCCCCCCCCCccc
Q 016166           45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (394)
Q Consensus        45 v~LCd~C~s---~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRv   88 (394)
                      ...|+.|..   .+|+.+|..|.+++|..|-...|.......+|+.+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            367999975   56899999999999999998768766667788764

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=87.63  E-value=0.25  Score=35.40  Aligned_cols=40  Identities=20%  Similarity=0.465  Sum_probs=31.0

Q ss_pred             cccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166           45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (394)
Q Consensus        45 v~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~   91 (394)
                      ..+|..+. .+..+||..|...+|..|... .|.      .|..+||.
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   48 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLS   48 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECC
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHH
Confidence            34677776 678899999999999999873 443      67777765

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=87.45  E-value=0.23  Score=34.95  Aligned_cols=41  Identities=15%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             cccccccCCCCceeeccCCcccccccccc-CCcCCCCCCCCCcccccc
Q 016166           45 TLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN   91 (394)
Q Consensus        45 v~LCd~C~s~PA~v~C~~D~asLC~~CD~-~~HsAN~la~rHqRvpl~   91 (394)
                      ..+|......+..+||..|...+|..|.. ..|.      .|..+||.
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence            34677766567889999999999999974 3454      56666654

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=86.99  E-value=0.45  Score=32.29  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=22.4

Q ss_pred             cccccCCCCceeeccCCccccccccccC
Q 016166           47 LCERCNSQPALVRCAEERVSLCQNCDWI   74 (394)
Q Consensus        47 LCd~C~s~PA~v~C~~D~asLC~~CD~~   74 (394)
                      +|.... .+..+||..|...+|..|...
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~   31 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDS   31 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence            566665 567899999999999999873

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=83.83  E-value=0.45  Score=36.91  Aligned_cols=43  Identities=19%  Similarity=0.496  Sum_probs=31.4

Q ss_pred             cccccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166           43 SRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (394)
Q Consensus        43 ~Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~   91 (394)
                      .+..+|..+...+-.+||..|...+|..|... .|.      .|..+||.
T Consensus        16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   59 (84)
T 2dja_A           16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN   59 (84)
T ss_dssp             SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred             CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHH
Confidence            44456777766678999999999999999873 443      46555544

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.64  E-value=0.71  Score=34.04  Aligned_cols=41  Identities=22%  Similarity=0.462  Sum_probs=30.7

Q ss_pred             ccccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (394)
Q Consensus        44 Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~   91 (394)
                      +..+|..+. .+..+||..|...+|..|... .|.      .|..+||.
T Consensus        13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~   54 (59)
T 2yrg_A           13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTS   54 (59)
T ss_dssp             CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECC
T ss_pred             cCccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHH
Confidence            335677775 578899999999999999874 343      57776765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	93.88
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	93.58
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	90.75
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	87.87
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	87.29

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.011  Score=43.40  Aligned_cols=50  Identities=18%  Similarity=0.496  Sum_probs=38.9

Q ss_pred             chhhcccccccccccCCCCceeeccCCccccccccccCCcCCCCCCCCCcccccc
Q 016166           37 ALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (394)
Q Consensus        37 ~La~RH~Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~~HsAN~la~rHqRvpl~   91 (394)
                      ++...+.|...|..+...+..+||..|...+|..|...+++     ..|...+|.
T Consensus         3 P~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H-----k~H~~~~i~   52 (71)
T d2djaa1           3 PVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH-----RDHQVASLN   52 (71)
T ss_dssp             CCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT-----TTCCBCCCC
T ss_pred             CCCccccCCCcCcccCCccceeEcCCCCceeccccccCCCC-----CCCcCcCHH
Confidence            34556788888999988899999999999999999765422     247666655

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.013  Score=40.47  Aligned_cols=44  Identities=20%  Similarity=0.544  Sum_probs=35.9

Q ss_pred             ccccccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (394)
Q Consensus        42 H~Rv~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~   91 (394)
                      |.|..+|......+..+||..|..++|..|... .|.      .|.-.+|.
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~------~H~~~~l~   46 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAALS   46 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT------SSCCCCSC
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCcC------CCeEeeCC
Confidence            678889999988899999999999999999765 353      57665553

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.048  Score=37.92  Aligned_cols=40  Identities=15%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             ccccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCcccccc
Q 016166           46 LLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (394)
Q Consensus        46 ~LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl~   91 (394)
                      |+|......+..+||..|...+|..|... .|.      .|.-.+|.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk------~H~v~~l~   42 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   42 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCcC------cCcCcCHH
Confidence            57888888889999999999999999765 342      47665554

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=87.87  E-value=0.17  Score=33.44  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=26.1

Q ss_pred             ccccCCCCceeeccCCccccccccccCC-cCCCCCCCCCccccc
Q 016166           48 CERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTI   90 (394)
Q Consensus        48 Cd~C~s~PA~v~C~~D~asLC~~CD~~~-HsAN~la~rHqRvpl   90 (394)
                      |...+ .+-.+||..|...+|..|...+ |.      .|.-+||
T Consensus         3 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~v~pi   39 (39)
T d1frea_           3 CSEHD-ERLKLYCKDDGTLSCVICRDSLKHA------SHNFLPI   39 (39)
T ss_dssp             CCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT------TCCCCCC
T ss_pred             CcccC-cceeEEcccCCcEeeccCcCCCCcC------CCcEeeC
Confidence            44443 4678999999999999997643 43      5766664

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.29  E-value=0.11  Score=34.44  Aligned_cols=37  Identities=22%  Similarity=0.521  Sum_probs=28.0

Q ss_pred             cccccCCCCceeeccCCccccccccccC-CcCCCCCCCCCccccc
Q 016166           47 LCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTI   90 (394)
Q Consensus        47 LCd~C~s~PA~v~C~~D~asLC~~CD~~-~HsAN~la~rHqRvpl   90 (394)
                      +|...+ .+-.+||..|...+|..|... .|      ..|.-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            566663 567899999999999999765 34      35776665