Citrus Sinensis ID: 016169
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 394 | ||||||
| 375300672 | 682 | neutral/alkaline invertase [Manihot escu | 0.949 | 0.548 | 0.670 | 1e-143 | |
| 255542946 | 685 | beta-fructofuranosidase, putative [Ricin | 0.969 | 0.557 | 0.661 | 1e-142 | |
| 449490800 | 601 | PREDICTED: uncharacterized LOC101218389 | 0.758 | 0.497 | 0.779 | 1e-137 | |
| 359487679 | 673 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.561 | 0.682 | 1e-136 | |
| 163913886 | 674 | putative neutral invertase [Vitis vinife | 0.959 | 0.560 | 0.682 | 1e-136 | |
| 163913884 | 674 | putative neutral invertase [Vitis vinife | 0.959 | 0.560 | 0.682 | 1e-136 | |
| 449454129 | 589 | PREDICTED: uncharacterized protein LOC10 | 0.705 | 0.471 | 0.810 | 1e-134 | |
| 163913882 | 676 | putative neutral invertase [Vitis vinife | 0.974 | 0.568 | 0.644 | 1e-131 | |
| 163913880 | 676 | putative neutral invertase [Vitis vinife | 0.974 | 0.568 | 0.641 | 1e-131 | |
| 296089802 | 647 | unnamed protein product [Vitis vinifera] | 0.906 | 0.551 | 0.668 | 1e-131 |
| >gi|375300672|gb|AFA46813.1| neutral/alkaline invertase [Manihot esculenta] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/407 (67%), Positives = 305/407 (74%), Gaps = 33/407 (8%)
Query: 1 MNSINLLGNSTMKLSGRFLIPCRNASFSAFIVIKHPNHHCLSNKSSTFCFKFDQINQIQA 60
M ++ L NSTMK S RFLI R F K+ HH L+ S FD Q
Sbjct: 1 MATLIFLSNSTMKPSCRFLITRRTPGI--FGSAKY--HHTLTGDISRNEISFDHNKQFSE 56
Query: 61 HPYKISGFQRILKDTQKPLCV----FGP-------SCGQIRVNSRPFSVVSTKSRGLYLV 109
+P+ GF+ I+ TQK C+ FGP SCG R R SRG+ +V
Sbjct: 57 YPFGFFGFRSIINSTQKIFCIPIANFGPPRLVSGSSCGD-RTRRR-------ASRGVSVV 108
Query: 110 ASRVASNVSSFSTSVETRVNDGNFERIYVQNGLNVKPLVVERIDKDENIVGQEESCVEV- 168
AS VAS V +STSVETRVND NFERIYV NG+ VKPLVVE+IDKDE+++G+ S + V
Sbjct: 109 AS-VASEVKEYSTSVETRVNDKNFERIYVHNGIGVKPLVVEKIDKDEDVLGEAASRIGVV 167
Query: 169 --NDDEKVGKDNLEGVR------TKREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPG 220
++ EKV +NLEGV+ + REE+EIEKEAW+LL +A+VTYC SP+GTVAAND G
Sbjct: 168 VPDEGEKVNTENLEGVKGVEIGNSWREESEIEKEAWKLLNDAIVTYCGSPVGTVAANDQG 227
Query: 221 DKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPA 280
DKQPLNYDQVFIRDFVPSALAFLL+GEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPA
Sbjct: 228 DKQPLNYDQVFIRDFVPSALAFLLRGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPA 287
Query: 281 SFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVD 340
SFKVR VPL+ NK EEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGD LQERVD
Sbjct: 288 SFKVRTVPLDGNKSEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDNTLQERVD 347
Query: 341 VQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQV 387
VQ GIKLI+NLCL DGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQ
Sbjct: 348 VQIGIKLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQA 394
|
Source: Manihot esculenta Species: Manihot esculenta Genus: Manihot Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542946|ref|XP_002512536.1| beta-fructofuranosidase, putative [Ricinus communis] gi|223548497|gb|EEF49988.1| beta-fructofuranosidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449490800|ref|XP_004158710.1| PREDICTED: uncharacterized LOC101218389 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359487679|ref|XP_002277312.2| PREDICTED: uncharacterized protein LOC100254513 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|163913886|emb|CAP59646.1| putative neutral invertase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|163913884|emb|CAP59645.1| putative neutral invertase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449454129|ref|XP_004144808.1| PREDICTED: uncharacterized protein LOC101218389 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|163913882|emb|CAP59644.1| putative neutral invertase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|163913880|emb|CAP59643.1| putative neutral invertase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|296089802|emb|CBI39621.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 394 | ||||||
| TAIR|locus:2074434 | 659 | INVH "invertase H" [Arabidopsi | 0.677 | 0.405 | 0.738 | 1.2e-108 | |
| TAIR|locus:2084329 | 664 | A/N-InvC "alkaline/neutral inv | 0.939 | 0.557 | 0.558 | 4.5e-98 | |
| TAIR|locus:2027600 | 616 | A/N-InvA "alkaline/neutral inv | 0.581 | 0.371 | 0.765 | 1.8e-94 | |
| TAIR|locus:2171112 | 617 | INV-E "alkaline/neutral invert | 0.5 | 0.319 | 0.768 | 6.4e-83 | |
| TAIR|locus:2116870 | 571 | A/N-InvB "alkaline/neutral inv | 0.477 | 0.329 | 0.609 | 1e-59 | |
| TAIR|locus:2133737 | 558 | CINV2 "cytosolic invertase 2" | 0.479 | 0.338 | 0.598 | 3.5e-59 | |
| TAIR|locus:2014676 | 551 | CINV1 "cytosolic invertase 1" | 0.479 | 0.343 | 0.604 | 2.5e-58 | |
| TAIR|locus:2016064 | 499 | A/N-InvF "alkaline/neutral inv | 0.479 | 0.378 | 0.588 | 2.8e-57 | |
| TAIR|locus:2199690 | 534 | A/N-InvD "alkaline/neutral inv | 0.479 | 0.353 | 0.578 | 7.5e-57 |
| TAIR|locus:2074434 INVH "invertase H" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1042 (371.9 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 206/279 (73%), Positives = 230/279 (82%)
Query: 109 VASRVASNVSSFSTSVETRVNDGNFERIYVQNGLNVKPLVVERIDKDENIVGQEESCVEV 168
V ++V S S S S T ND ++IY +NGLNVKPLVVER+ +DE EE+ V
Sbjct: 101 VTAQVVSEARSHSAST-TCANDTTLDQIYTKNGLNVKPLVVERLKRDEK---DEEA---V 153
Query: 169 NDDEK-VGKDNLEGVXXXXXXXXXXXXAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNY 227
N+DE+ V +D EGV AWRLL++++VTYC+SP+GTVAA DP D P NY
Sbjct: 154 NEDEEGVKRDGFEGVKCNDVEEE----AWRLLRDSIVTYCDSPVGTVAAKDPTDTTPSNY 209
Query: 228 DQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNV 287
DQVFIRDFVPSALAFLLKGE EIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVR +
Sbjct: 210 DQVFIRDFVPSALAFLLKGESEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTL 269
Query: 288 PLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKL 347
PLE +KFEEVLDPDFGE+AIGRVAPVDSGLWWIILLRAYGKITGDY+LQER+DVQTGIK+
Sbjct: 270 PLEEDKFEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKITGDYSLQERIDVQTGIKM 329
Query: 348 IMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQ 386
I NLCLADGFDMFP+LLVTDGSCMIDRRMGIHGHPLEIQ
Sbjct: 330 IANLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQ 368
|
|
| TAIR|locus:2084329 A/N-InvC "alkaline/neutral invertase C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2027600 A/N-InvA "alkaline/neutral invertase A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2171112 INV-E "alkaline/neutral invertase E" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2116870 A/N-InvB "alkaline/neutral invertase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2133737 CINV2 "cytosolic invertase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014676 CINV1 "cytosolic invertase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2016064 A/N-InvF "alkaline/neutral invertase F" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2199690 A/N-InvD "alkaline/neutral invertase D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 394 | |||
| pfam12899 | 437 | pfam12899, Glyco_hydro_100, Alkaline and neutral i | 1e-126 | |
| PLN02703 | 618 | PLN02703, PLN02703, beta-fructofuranosidase | 1e-122 | |
| PLN03005 | 550 | PLN03005, PLN03005, beta-fructofuranosidase | 4e-81 | |
| PLN02973 | 571 | PLN02973, PLN02973, beta-fructofuranosidase | 3e-79 |
| >gnl|CDD|221840 pfam12899, Glyco_hydro_100, Alkaline and neutral invertase | Back alignment and domain information |
|---|
Score = 371 bits (954), Expect = e-126
Identities = 136/194 (70%), Positives = 155/194 (79%), Gaps = 4/194 (2%)
Query: 194 EAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRN 253
EAW LL++++V Y P+GTVAA DP + LNYDQ FIRDFVPSALAFLLKG EIVRN
Sbjct: 1 EAWELLEKSLVYYQGRPVGTVAALDPSAEDALNYDQCFIRDFVPSALAFLLKGRPEIVRN 60
Query: 254 FLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPV 313
FLL TLQLQS EKTVDC+ PG+G+MPASFKV + E EE L DFGE AIGRVAPV
Sbjct: 61 FLLETLQLQSQEKTVDCFEPGRGVMPASFKVLHDKDE----EETLIADFGERAIGRVAPV 116
Query: 314 DSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMID 373
DSGLWWIILLRAY K TGDY+ E DVQ GI+LI++LCL+D FDMFP+LLV DG+ MID
Sbjct: 117 DSGLWWIILLRAYVKATGDYSFAESPDVQRGIRLILDLCLSDRFDMFPTLLVPDGAFMID 176
Query: 374 RRMGIHGHPLEIQV 387
RRMG++GHPLEIQ
Sbjct: 177 RRMGVYGHPLEIQA 190
|
This is a family of bacterial and plant alkaline and neutral invertases, EC:3.2.1.26, previously known as Invertase_neut pfam04853. Length = 437 |
| >gnl|CDD|178306 PLN02703, PLN02703, beta-fructofuranosidase | Back alignment and domain information |
|---|
| >gnl|CDD|178582 PLN03005, PLN03005, beta-fructofuranosidase | Back alignment and domain information |
|---|
| >gnl|CDD|178556 PLN02973, PLN02973, beta-fructofuranosidase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 394 | |||
| PF12899 | 436 | Glyco_hydro_100: Alkaline and neutral invertase; I | 100.0 | |
| PLN03005 | 550 | beta-fructofuranosidase | 100.0 | |
| PLN02973 | 571 | beta-fructofuranosidase | 100.0 | |
| PLN02703 | 618 | beta-fructofuranosidase | 100.0 | |
| TIGR01561 | 575 | gde_arch glycogen debranching enzyme, archaeal typ | 99.16 | |
| PF06202 | 370 | GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR | 99.1 | |
| COG3408 | 641 | GDB1 Glycogen debranching enzyme [Carbohydrate tra | 98.9 | |
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 98.31 | |
| TIGR01577 | 616 | oligosac_amyl oligosaccharide amylase. The name of | 98.15 | |
| PF00723 | 448 | Glyco_hydro_15: Glycosyl hydrolases family 15; Int | 93.0 | |
| PF05592 | 509 | Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int | 92.1 | |
| PF04685 | 365 | DUF608: Protein of unknown function, DUF608; Inter | 92.06 | |
| TIGR01535 | 648 | glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc | 91.69 | |
| COG3387 | 612 | SGA1 Glucoamylase and related glycosyl hydrolases | 83.14 |
| >PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-100 Score=757.70 Aligned_cols=195 Identities=71% Similarity=1.191 Sum_probs=191.0
Q ss_pred HHHHHHHHhhccccCccceEEecCCCCCCCCCCCcceeeccchHHHHHHHhcCcHHHHHHHHHHhhccccccccccccCC
Q 016169 194 EAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSP 273 (394)
Q Consensus 194 eAwelL~~s~V~y~g~PvGTVAA~D~~~~~aLNYdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~ 273 (394)
||||+||+|+|+|+|+|||||||.||+.+++|||||||+||||||||||||+||+|||||||++||+||||||+||||++
T Consensus 1 ~a~~~l~~s~v~~~g~pvGtvAa~d~~~~~~lNY~qvF~RDfvps~l~fL~~g~~eIVrnFL~~tl~Lq~~~~~~d~~~~ 80 (436)
T PF12899_consen 1 EAWELLERSIVYYQGQPVGTVAALDPSAEEALNYDQVFVRDFVPSALAFLMKGEPEIVRNFLLETLQLQSWEKQVDCFKP 80 (436)
T ss_pred ChHHHHhhheEeeCCceeeeeeecCCcccccccccceEeecChHHHHHHHHcCCHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 69999999999999999999999999877899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceeEEeeccCCCCCcccccccCCCCcccccccccCCccHHHHHHHHHhhccCCcccccchhhHHHHHHHHHhhh
Q 016169 274 GQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCL 353 (394)
Q Consensus 274 g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl~~~pevQrGIrlIL~LcL 353 (394)
|+|+|||||||++++ ++|+|+|||||+|||||||||||||||||||||+|+|||++|+++||||+||||||+|||
T Consensus 81 g~G~mPaSFkv~~~~-----~~e~l~aDfGe~AIgRv~pVDs~~WWiillraY~k~tgD~s~~~~~~~Q~gi~liL~lcL 155 (436)
T PF12899_consen 81 GRGVMPASFKVLHEN-----EEETLIADFGERAIGRVAPVDSGLWWIILLRAYVKATGDYSLAESPEVQRGIRLILDLCL 155 (436)
T ss_pred CCCcccceEEEecCC-----CCceEecCcchhhhccccCcccccHHHHHHHHHHHHhcchhhhhcHHHHHHHHHHHHHHc
Confidence 999999999999754 679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeeecCCccccccccccCCCchhhhhhhhhcc
Q 016169 354 ADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 354 ~~~Fd~fPtLlVpDgs~MIDRrMgV~GyPLEIQaLfy~A~ 393 (394)
+++||||||||||||||||||||||||||||||||||+|.
T Consensus 156 ~~~Fd~~PtLlvpDg~~MiDRrMgv~G~PlEiQ~Lf~~aL 195 (436)
T PF12899_consen 156 ADGFDMFPTLLVPDGACMIDRRMGVYGHPLEIQALFYMAL 195 (436)
T ss_pred ccccCCCceEEecCCceeecccccccCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999984
|
This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity |
| >PLN03005 beta-fructofuranosidase | Back alignment and domain information |
|---|
| >PLN02973 beta-fructofuranosidase | Back alignment and domain information |
|---|
| >PLN02703 beta-fructofuranosidase | Back alignment and domain information |
|---|
| >TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative | Back alignment and domain information |
|---|
| >PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT | Back alignment and domain information |
|---|
| >COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
| >TIGR01577 oligosac_amyl oligosaccharide amylase | Back alignment and domain information |
|---|
| >PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes | Back alignment and domain information |
|---|
| >PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide [] | Back alignment and domain information |
|---|
| >TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase | Back alignment and domain information |
|---|
| >COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 394 | |||
| 1v7w_A | 807 | Chitobiose phosphorylase; beta-sandwich, (alpha/al | 1e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 |
| >1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* Length = 807 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 5/108 (4%)
Query: 233 RDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESN 292
RD A++ E+ R ++ L+ Q P +V +
Sbjct: 349 RDTAQDAISVPH-ANPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEK---EDVAPSKS 404
Query: 293 KFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYA-LQERV 339
D + + D LW I + Y TG+ + + +
Sbjct: 405 PTVVPTPSDEDKIHGIKDTCSDDHLWLIPTICKYVMETGETSFFDQMI 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 394 | |||
| 1v7w_A | 807 | Chitobiose phosphorylase; beta-sandwich, (alpha/al | 98.8 | |
| 3qde_A | 811 | Cellobiose phosphorylase; cellulase, phosphate, tr | 98.1 | |
| 3rrs_A | 822 | Cellobiose phosphorylase; GH94, alpha barrel, disa | 98.08 | |
| 2okx_A | 956 | Rhamnosidase B; alpha barrel, glycoside hydrolase | 97.3 | |
| 1ulv_A | 1020 | Glucodextranase; GH family 15, (alpha-alpha)6-barr | 96.62 | |
| 3cih_A | 739 | Putative alpha-rhamnosidase; structural genomics, | 96.21 | |
| 2z07_A | 420 | Putative uncharacterized protein TTHA0978; unchara | 95.57 | |
| 1lf6_A | 684 | Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica | 95.49 | |
| 3c68_A | 761 | Uncharacterized protein YGJK; GH63, processing alp | 94.77 | |
| 2jg0_A | 535 | Periplasmic trehalase; family 37, hydrolase, inhib | 92.34 | |
| 2fba_A | 492 | Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy | 85.51 | |
| 2vn4_A | 599 | Glucoamylase; hydrolase, carbohydrate binding, gly | 85.09 | |
| 1gai_A | 472 | Glucoamylase-471; hydrolase, glycosidase, polysacc | 81.41 |
| >1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-09 Score=108.75 Aligned_cols=146 Identities=15% Similarity=0.118 Sum_probs=94.1
Q ss_pred eee-ccchHHHHHHHhcCcHHHHHHHHHHhhccccccccccccCCCCC-cccceeEEeeccCCCCC---cccccccCCCC
Q 016169 230 VFI-RDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQG-LMPASFKVRNVPLESNK---FEEVLDPDFGE 304 (394)
Q Consensus 230 vFi-RDfVPsaLafLl~Ge~EIVrnFL~~tL~LQs~ek~vd~~~~g~G-vmPASFkV~~~p~~~~~---~eE~L~ADFGe 304 (394)
-|. ||....+++++ .|++|++|++|..+...| ...| ++|..|...++|..++. ...+++.+.|+
T Consensus 345 ~~G~RD~~~~~~~l~-~~~p~~ar~~l~~~~~~Q----------~~~G~~~p~~~p~~~~~~~g~~~~~~~~~~~g~~~~ 413 (807)
T 1v7w_A 345 GLGYRDTAQDAISVP-HANPEMTRKRIVDLLRGQ----------VKAGYGLHLFDPDWFDPEKEDVAPSKSPTVVPTPSD 413 (807)
T ss_dssp SEEHHHHHHHTTSCT-TTCHHHHHHHHHHHHHTB----------CTTSCBCSEECGGGGCC-------------------
T ss_pred ccCchHHhHHHHHHh-hcCHHHHHHHHHHHHhcc----------ccCCCcceeeeeccccccccccCCccccccccCCCc
Confidence 466 99999999976 999999999999998888 2445 56666522222100000 00112233454
Q ss_pred cc--cc-cccccCCccHHHHHHHHHhhccCCcccccc--h-----------hhHHHHHHHHHhhhccCCCCcceeeecCC
Q 016169 305 SA--IG-RVAPVDSGLWWIILLRAYGKITGDYALQER--V-----------DVQTGIKLIMNLCLADGFDMFPSLLVTDG 368 (394)
Q Consensus 305 ~A--IG-RVapVDS~LWWiILlraY~k~TGD~sl~~~--p-----------evQrGIrlIL~LcL~~~Fd~fPtLlVpDg 368 (394)
.+ +| +..-.|..+||+++++.|.+.|||.++-+. | .+++++.+++..+-. +..|....
T Consensus 414 ~~~~~g~~~~~~D~~lw~~~~~~~y~~~tGD~~~L~e~~p~~~~~~~~v~e~~~~~~~~~~~~~~~---~GL~~~~~--- 487 (807)
T 1v7w_A 414 EDKIHGIKDTCSDDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQ---TGICKGLR--- 487 (807)
T ss_dssp ---CCCGGGCBSSGGGGHHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHHHHHHHHHHHSBCT---TSCBEEET---
T ss_pred chhhcCCCCCccchhhHHHHHHHHHHHHhCCHHHHhcccccccCCcchHHHHHHHHHHHHHhcCCC---CCCcccCC---
Confidence 33 33 233349999999999999999999999654 4 499999999875433 55565433
Q ss_pred ccccc-cccccCCCchhhhhhhhhcc
Q 016169 369 SCMID-RRMGIHGHPLEIQVSLICFF 393 (394)
Q Consensus 369 s~MID-RrMgV~GyPLEIQaLfy~A~ 393 (394)
.+|-| -.+| .|.++++|+++|.|.
T Consensus 488 ~DW~D~~~~~-~g~~v~~~a~~y~al 512 (807)
T 1v7w_A 488 ADWNDCLNLG-GGESSMVSFLHFWAL 512 (807)
T ss_dssp CSSSTTCCCE-EEEEHHHHHHHHHHH
T ss_pred CCCCCcCCCC-CCeehhHHHHHHHHH
Confidence 34433 0235 899999999999874
|
| >3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum} | Back alignment and structure |
|---|
| >3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A* | Back alignment and structure |
|---|
| >2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} | Back alignment and structure |
|---|
| >1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* | Back alignment and structure |
|---|
| >3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* | Back alignment and structure |
|---|
| >2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A* | Back alignment and structure |
|---|
| >2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A | Back alignment and structure |
|---|
| >2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* | Back alignment and structure |
|---|
| >1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 394 | ||||
| d1v7wa1 | 531 | a.102.1.4 (A:271-801) Chitobiose phosphorylase Chb | 3e-06 |
| >d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Length = 531 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glycosyltransferase family 36 C-terminal domain domain: Chitobiose phosphorylase ChbP species: Vibrio proteolyticus [TaxId: 671]
Score = 46.8 bits (110), Expect = 3e-06
Identities = 24/186 (12%), Positives = 47/186 (25%), Gaps = 11/186 (5%)
Query: 211 IGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDC 270
V + + + RD A++ E+ R ++ L+ Q
Sbjct: 57 TCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH-ANPEMTRKRIVDLLRGQVKAGYGLH 115
Query: 271 YSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKIT 330
P +V + D + + D LW I + Y T
Sbjct: 116 LFDPDWFDPEK---EDVAPSKSPTVVPTPSDEDKIHGIKDTCSDDHLWLIPTICKYVMET 172
Query: 331 GDYA-LQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMI------DRRMGIHGHPL 383
G+ + + + G + + + D + G C D G
Sbjct: 173 GETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQTGICKGLRADWNDCLNLGGGESS 232
Query: 384 EIQVSL 389
+
Sbjct: 233 MVSFLH 238
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 394 | |||
| d1lf6a1 | 397 | Bacterial glucoamylase, C-terminal domain {Thermoa | 98.32 | |
| d1v7wa1 | 531 | Chitobiose phosphorylase ChbP {Vibrio proteolyticu | 98.01 | |
| d1ulva1 | 413 | Glucodextranase, domain A {Arthrobacter globiformi | 97.81 |
| >d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Bacterial glucoamylase, C-terminal domain species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
Probab=98.32 E-value=1.6e-07 Score=84.80 Aligned_cols=153 Identities=15% Similarity=0.081 Sum_probs=104.9
Q ss_pred cHHHHHHHHHHHHhhccccCc-cceEEecCCCCCC------CCCCCcceeeccchHHHHHHHhcCcHHHHHHHHHHhhcc
Q 016169 189 TEIEKEAWRLLQEAVVTYCES-PIGTVAANDPGDK------QPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQL 261 (394)
Q Consensus 189 ~~~~~eAwelL~~s~V~y~g~-PvGTVAA~D~~~~------~aLNYdqvFiRDfVPsaLafLl~Ge~EIVrnFL~~tL~L 261 (394)
..+.....-.|+. ..+-+ +-++|||.+.+-. ..=+|.-||+||.+.++++|+..|..|..+.||..+++.
T Consensus 8 ~~~~~~s~~~lk~---~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~~~~a~~~l~~l~~~ 84 (397)
T d1lf6a1 8 NSLYYNSMMILKA---SEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDVDSANRSLDYLAKV 84 (397)
T ss_dssp CHHHHHHHHHHHT---TBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---ccCCCCCceEEEeCCCCcccccCCCCCCCCeeEcHhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666663 11223 4678888865321 123599999999999999999999999999999998888
Q ss_pred ccccccccccCCCCCcccceeEEeeccCCCCCcccccccCCCCcccccccccCCccHHHHHHHHHhhccCCcccccchhh
Q 016169 262 QSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDV 341 (394)
Q Consensus 262 Qs~ek~vd~~~~g~GvmPASFkV~~~p~~~~~~eE~L~ADFGe~AIGRVapVDS~LWWiILlraY~k~TGD~sl~~~pev 341 (394)
|. ..|-+|.-+ .+ + |...-+++ ..|+..|+++++..|.+.+. ..+-+
T Consensus 85 ~~----------~~G~~~~~~----~~-~------------G~~~~~~~-q~D~~g~~i~a~~~~~~~~~-----~~~~i 131 (397)
T d1lf6a1 85 VK----------DNGMIPQNT----WI-S------------GKPYWTGI-QLDEQADPIILSYRLKRYDL-----YDSLV 131 (397)
T ss_dssp HH----------HHSSCCSCB----CT-T------------SCBCCCCC-CHHHHHHHHHHHHHTTCGGG-----TTTTH
T ss_pred hc----------ccCCCCCCC----Cc-C------------CCccccCC-CCchHHHHHHHHHHHHhcch-----hHHHH
Confidence 73 346667665 21 1 11222332 47999999999999977654 35667
Q ss_pred HHHHHHHHHhhhccCCCCcceeeecCCccccccccccCCCchhhhhhhhhc
Q 016169 342 QTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQVSLICF 392 (394)
Q Consensus 342 QrGIrlIL~LcL~~~Fd~fPtLlVpDgs~MIDRrMgV~GyPLEIQaLfy~A 392 (394)
++.+..|+..=-. ||...|-. ..|+..+.+++.|.|
T Consensus 132 ~~~~~~l~~~~~~-----------~~~~lWEe----~~g~~~~t~~~~~~a 167 (397)
T d1lf6a1 132 KPLADFIIKIGPK-----------TGQERWEE----IGGYSPATMAAEVAG 167 (397)
T ss_dssp HHHHHHHHHHCSS-----------BSSCTTSS----CCBBCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-----------Cccccccc----cCCcccchhHHHHHH
Confidence 7888887754333 44444544 467888888887765
|
| >d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} | Back information, alignment and structure |
|---|
| >d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|