Citrus Sinensis ID: 016196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSREPSSDMNRPVEA
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEccHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcEEEEEEccccccccccHHcccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEcHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEcccccccccccEEEEEccccccccccEEEccccEEHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEEcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mvcsendtalnisipvlmipksrgdalnkSIADKQRVELLlyapnrpdvdFAVIFLWMMAVGTIIAAALWSLLTseqtderynelspkessnleavkddsekEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKcrncgrktvhlplldevSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVArgdnsggesipmllriprlfdpwggydmigfgdilfPGLLICFAFrydkenkkgvVKGYFLWLIIGYGFGLFLTYLGLYLmnghgqpallyLVPCTLGLTVILGLARGELKHlwdysrepssdmnrpvea
Flexible Loop (DISEMBL)
mvcsendtalnisipvlmipksRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERynelspkessnleavkddsekEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGdnsggesiPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKhlwdysrepssdmnrpvea
Low Complexity Region (SEG)
MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHlplldevsvlslvvllfcvvfavvwavRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIgygfglfltylglylMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSREPSSDMNRPVEA
Disordered region (IsUnstruct)
*********LNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLT*****************************VLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDY**************
Disordered Region (DISOPRED)
******DTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSE*****************************DITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLW****************
Disordered Region (DISEMBL)
MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSE**************************EVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSR************
Disordered Region (DISPRO)
*****NDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDER*********************EVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYS*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSREPSSDMNRPVEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q9MA44	536	Signal peptide peptidase-	yes	no	1.0	0.733	0.676	1e-161
Q53P98	534	Signal peptide peptidase-	yes	no	0.979	0.720	0.644	1e-153
Q4V3B8	540	Signal peptide peptidase-	no	no	0.974	0.709	0.690	1e-149
Q5Z413	542	Signal peptide peptidase-	no	no	0.959	0.695	0.527	1e-112
Q0DWA9	545	Signal peptide peptidase-	no	no	0.949	0.684	0.523	1e-112
Q0WMJ8	540	Signal peptide peptidase-	no	no	0.974	0.709	0.525	1e-111
Q8W469	540	Signal peptide peptidase-	no	no	0.956	0.696	0.522	1e-110
Q5N808	523	Signal peptide peptidase-	no	no	0.933	0.701	0.510	1e-109
Q5F383	596	Signal peptide peptidase-	yes	no	0.900	0.593	0.359	7e-53
Q5PQL3	577	Signal peptide peptidase-	yes	no	0.900	0.613	0.349	2e-50

>sp|Q9MA44|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1

 Score =  568 bits (1464), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/396 (67%), Positives = 329/396 (83%), Gaps = 3/396 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVC E DT+LN+SIP+LMI  S GDAL KSI   ++VELLLYAP  P VD+AV+FLW+M+
Sbjct: 141 MVCGEKDTSLNVSIPILMITTSSGDALKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMS 200

Query: 61  VGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT+  A++WS +TS ++ DE+Y+ELSPK+SSN++A K  +E+E LDI+A GA++FVI A
Sbjct: 201 VGTVFVASVWSHVTSPKKNDEQYDELSPKKSSNVDATKGGAEEETLDISAMGAVIFVISA 260

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           STFLVLL+FFMSSWF+ +L + F IGG++GMHNI VTL+  +C  CG+K + LPLL   S
Sbjct: 261 STFLVLLFFFMSSWFILILTIFFVIGGMQGMHNINVTLITRRCSKCGQKNLKLPLLGNTS 320

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           +LSLVVLLFC V A++W + R+ S++W GQDI GIC+MI VLQ+ARLPNI+VA++LLCCA
Sbjct: 321 ILSLVVLLFCFVVAILWFMNRKTSHAWAGQDIFGICMMINVLQVARLPNIRVATILLCCA 380

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           F YDIFWVF+SPLIF +SVMIAVARG    GESIPMLLRIPRL DPWGGY+MIGFGDILF
Sbjct: 381 FFYDIFWVFISPLIFKQSVMIAVARGSKDTGESIPMLLRIPRLSDPWGGYNMIGFGDILF 440

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLLICF FR+DKEN KGV  GYF WL+ GYG GLFLTYLGLY+MNGHGQPALLYLVPCT
Sbjct: 441 PGLLICFIFRFDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYVMNGHGQPALLYLVPCT 500

Query: 360 LGLTVILGLARGELKHLWDY-SREPS-SDMNRPVEA 393
           LG+TVILGL R EL+ LW+Y +++PS +D+N   EA
Sbjct: 501 LGITVILGLVRKELRDLWNYGTQQPSAADVNPSPEA 536

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|Q53P98|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1

 Score =  541 bits (1394), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 250/388 (64%), Positives = 318/388 (81%), Gaps = 3/388 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVCS+NDT++N++IPV+MIP+S G  +   +    R+E+ LY+PNRP VD +  FLW+MA
Sbjct: 145 MVCSDNDTSINVTIPVVMIPQSAGKKMKGLLDQGARLEVQLYSPNRPVVDLSACFLWIMA 204

Query: 61  VGTIIAAALWS-LLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           +GTI+ A+LW+  +  EQ DERYN+L+ K+  N     +  +KE+ +I+AKGAIVF++VA
Sbjct: 205 IGTIVCASLWTEFVACEQVDERYNQLTRKDGPN-SGTTNREDKEIFEISAKGAIVFILVA 263

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           S FL+LL++FMSSWFVWLL+VLFCIGGIEGMH  +VTL+   C++CG+KTV LP   EV 
Sbjct: 264 SVFLLLLFYFMSSWFVWLLIVLFCIGGIEGMHVCLVTLLTRICKDCGQKTVQLPFFGEVL 323

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
            LS++++ FC +FA++WAV R AS++W+GQDILGICLMITVLQMARLPNI+VAS LL  A
Sbjct: 324 TLSVLIVPFCTIFAILWAVYRHASFAWIGQDILGICLMITVLQMARLPNIRVASALLSAA 383

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYD+FWVF+SPLIFHESVMIAVARGDNS GE+IPMLLRIPR FDPWGGYDMIGFGDI+F
Sbjct: 384 FVYDVFWVFISPLIFHESVMIAVARGDNS-GEAIPMLLRIPRFFDPWGGYDMIGFGDIIF 442

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLL+ F++R+D+ +K+G+  GYFLWL +GY  GLFLTYL L+LM+GHGQPALLYLVPCT
Sbjct: 443 PGLLVAFSYRFDRASKRGLFNGYFLWLTVGYAVGLFLTYLALFLMDGHGQPALLYLVPCT 502

Query: 360 LGLTVILGLARGELKHLWDYSREPSSDM 387
           LGL VILG  RGEL  LW+Y R  + ++
Sbjct: 503 LGLIVILGWFRGELHDLWNYGRSQTENL 530

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q4V3B8|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/385 (69%), Positives = 313/385 (81%), Gaps = 2/385 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           M C E DT+LN+SIPVLMI KS GDALNKS+ D + VELLLYAP RP VD     L +MA
Sbjct: 145 MGCMEKDTSLNVSIPVLMISKSSGDALNKSMVDNKNVELLLYAPKRPAVDLTAGLLLLMA 204

Query: 61  VGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT++ A+LWS LT  +Q +E Y+ L+ K+ S+    KDD EKE+LDI+  GA+ F++ A
Sbjct: 205 VGTVVVASLWSELTDPDQANESYSILA-KDVSSAGTRKDDPEKEILDISVTGAVFFIVTA 263

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           S FL+LL++FMSSWFVW+L + FCIGG++GMHNII+ ++L KCR+  RK+V LPLL  +S
Sbjct: 264 SIFLLLLFYFMSSWFVWVLTIFFCIGGMQGMHNIIMAVILRKCRHLARKSVKLPLLGTMS 323

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           VLSL+V + C+ FAV W ++R  SYSWVGQDILGICLMIT LQ+ RLPNIKVA+VLLCCA
Sbjct: 324 VLSLLVNIVCLAFAVFWFIKRHTSYSWVGQDILGICLMITALQVVRLPNIKVATVLLCCA 383

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYDIFWVF+SPLIFHESVMI VA+GD+S GESIPMLLRIPR FDPWGGYDMIGFGDILF
Sbjct: 384 FVYDIFWVFISPLIFHESVMIVVAQGDSSTGESIPMLLRIPRFFDPWGGYDMIGFGDILF 443

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLLI FA RYDK  K+ +  GYFLWL IGYG GL LTYLGLYLM+GHGQPALLY+VPCT
Sbjct: 444 PGLLISFASRYDKIKKRVISNGYFLWLTIGYGIGLLLTYLGLYLMDGHGQPALLYIVPCT 503

Query: 360 LGLTVILGLARGELKHLWDYSREPS 384
           LGL VILGL RGELK LW+Y  E S
Sbjct: 504 LGLAVILGLVRGELKELWNYGIEES 528

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5Z413|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/377 (52%), Positives = 263/377 (69%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVC +N+T L+I+IP +++P+  G AL+  +     V +  Y+P+RP VD A +FLW+MA
Sbjct: 140 MVCEKNETDLDINIPAVLLPRDAGFALHTVLTSGNSVSVQQYSPDRPVVDTAEVFLWLMA 199

Query: 61  VGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVAS 120
           VGT++ A+ WS  ++ +      +L       L  V++ S   ++DI    AI+FV+VAS
Sbjct: 200 VGTVLCASYWSAWSAREALCEQEKLLKDGREVLLNVENGSSSGMIDINVASAIMFVVVAS 259

Query: 121 TFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSV 180
            FL++LY  MSSWFV LLVV+FC+GG+EG+   +V L+    R        +P    VS 
Sbjct: 260 CFLIMLYKMMSSWFVELLVVIFCVGGVEGLQTCLVALLSRWFRAASESFFKVPFFGAVSY 319

Query: 181 LSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAF 240
           L+L V  FC+VFAV+WAV R  +Y+W+GQDILGI L+ITV+Q+ R+PN+KV SVLL CAF
Sbjct: 320 LTLAVSPFCIVFAVLWAVHRHFTYAWIGQDILGIALIITVIQIVRVPNLKVGSVLLSCAF 379

Query: 241 VYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFP 300
            YDIFWVFVS   FHESVMI VARGD +  + +PMLL+IPR+FDPWGGY +IGFGDIL P
Sbjct: 380 FYDIFWVFVSKRWFHESVMIVVARGDKTDEDGVPMLLKIPRMFDPWGGYSIIGFGDILLP 439

Query: 301 GLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTL 360
           GLL+ FA RYD   KK +  GYFLW ++ YG GL +TY+ L LM+GHGQPALLY+VP TL
Sbjct: 440 GLLVAFALRYDWAAKKSLQTGYFLWSMVAYGSGLLITYVALNLMDGHGQPALLYIVPFTL 499

Query: 361 GLTVILGLARGELKHLW 377
           G  + LG  RGEL +LW
Sbjct: 500 GALISLGWKRGELWNLW 516

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q0DWA9|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1

 Score =  406 bits (1043), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/380 (52%), Positives = 271/380 (71%), Gaps = 7/380 (1%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVC  N+T L+I+IP +++PK  G+ L K +  + +V + LY+P+RP VD A +FLW+MA
Sbjct: 142 MVCDRNETDLDINIPAVLLPKDAGNDLQKLLT-RGKVSVQLYSPDRPLVDTAEVFLWLMA 200

Query: 61  VGTIIAAALWSLLTSEQT---DERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVI 117
           VGTI+ A+ WS  ++ +     E+  +   + S NLEA        ++DI    AI+FV+
Sbjct: 201 VGTILCASYWSAWSAREAVIEQEKLLKDGHESSLNLEA---GGSSGMVDINMTSAILFVV 257

Query: 118 VASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDE 177
           +AS FL++LY  MS WFV LLVV+FCIGG+EG+   +V L+    +      V +P    
Sbjct: 258 IASCFLIMLYKLMSHWFVELLVVIFCIGGVEGLQTCLVALLSRWFKPAAESFVKVPFFGA 317

Query: 178 VSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLC 237
           VS L++ V  FC+VFAV+WAV R+ +Y+W+GQDILGI L++TV+Q+ R+PN+KV SVLL 
Sbjct: 318 VSYLTIAVCPFCIVFAVIWAVYRRMTYAWIGQDILGIALIVTVIQIVRIPNLKVGSVLLS 377

Query: 238 CAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDI 297
           C+F+YDIFWVF+S + FHESVMI VARGD +  + +PMLL+IPR+FDPWGG+ +IGFGDI
Sbjct: 378 CSFLYDIFWVFISKMWFHESVMIVVARGDKTDEDGVPMLLKIPRMFDPWGGFSIIGFGDI 437

Query: 298 LFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVP 357
           L PGLLI FA RYD   KK +  GYFLW ++ YG GL +TY+ L LM+GHGQPALLY+VP
Sbjct: 438 LLPGLLIAFALRYDWAAKKTLQSGYFLWSMVAYGSGLMITYVALNLMDGHGQPALLYIVP 497

Query: 358 CTLGLTVILGLARGELKHLW 377
            TLG  + LG  RGEL++LW
Sbjct: 498 FTLGTFIALGRKRGELRNLW 517

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q0WMJ8|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/394 (52%), Positives = 267/394 (67%), Gaps = 11/394 (2%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVC + +  L+I+IPV+M+P   G +L   +     V L LY+P RP VD A +FLW+MA
Sbjct: 143 MVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAVDVAEVFLWLMA 202

Query: 61  VGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVAS 120
           VGTI+ A+ WS  T  +     ++L    S  L  +   S + V+++T   AI+FV+VAS
Sbjct: 203 VGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTVISAILFVVVAS 262

Query: 121 TFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKC----RNCGRKTVHLPLLD 176
            FL++LY  MS WF+ +LVVLFCIGG+EG+   +V+L+   C    R  G   V +P L 
Sbjct: 263 CFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLL--SCFRWFRRFGESYVKVPFLG 320

Query: 177 EVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLL 236
            VS L+L +  FC+ FAV WAV+RQ SY+W+GQDILGI L+ITVLQ+ R+PN+KV  VLL
Sbjct: 321 AVSYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVPNLKVGFVLL 380

Query: 237 CCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGD 296
            CAF+YDIFWVFVS   F ESVMI VARGD SG + IPMLL+IPR+FDPWGGY +IGFGD
Sbjct: 381 SCAFMYDIFWVFVSKWWFRESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSIIGFGD 440

Query: 297 ILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLV 356
           I+ PGLL+ FA RYD    K +  GYFL  +  YG GL +TY+ L LM+GHGQPALLY+V
Sbjct: 441 IILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGHGQPALLYIV 500

Query: 357 PCTLGLTVILGLARGELKHLWDYSREPSSDMNRP 390
           P  LG   +LG  RG+LK LW  + EP    +RP
Sbjct: 501 PFILGTLFVLGHKRGDLKTLWT-TGEP----DRP 529

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1

 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/377 (52%), Positives = 265/377 (70%), Gaps = 1/377 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVC  ++T L+I IP +M+P+  G +L K +A+  +V   LY+P RP VD A +FLW+MA
Sbjct: 144 MVCEPDETDLDIQIPAVMLPQDAGASLQKMLANSSKVSAQLYSPRRPAVDVAEVFLWLMA 203

Query: 61  VGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVAS 120
           +GTI+ A+ WS  ++ +    +++L  K++ +     +D    V++I +  AI FV++AS
Sbjct: 204 IGTILCASYWSAWSAREAAIEHDKLL-KDAIDEIPNTNDGGSGVVEINSISAIFFVVLAS 262

Query: 121 TFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSV 180
            FLV+LY  MS WFV LLVV+FCIGG+EG+   +V L+    +      V +P L  +S 
Sbjct: 263 GFLVILYKLMSYWFVELLVVVFCIGGVEGLQTCLVALLSRWFQRAADTYVKVPFLGPISY 322

Query: 181 LSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAF 240
           L+L V  FC+VFAV+WAV R  S++W+GQD+LGI L+ITVLQ+  +PN+KV +VLL CAF
Sbjct: 323 LTLAVSPFCIVFAVLWAVYRVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAF 382

Query: 241 VYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFP 300
           +YDIFWVFVS  +FHESVMI VARGD SG + IPMLL+IPR+FDPWGGY +IGFGDIL P
Sbjct: 383 LYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP 442

Query: 301 GLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTL 360
           GLLI FA RYD    K +  GYF+W ++ YG GL +TY+ L LM+GHGQPALLY+VP TL
Sbjct: 443 GLLIAFALRYDWLANKTLRTGYFIWAMVAYGLGLLITYVALNLMDGHGQPALLYIVPFTL 502

Query: 361 GLTVILGLARGELKHLW 377
           G  + L   R +L  LW
Sbjct: 503 GTMLTLARKRDDLWILW 519

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/378 (51%), Positives = 266/378 (70%), Gaps = 11/378 (2%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVC++NDT  NI IPV+M+ +S G  +   +    +V++L+YAP +P  D A+ FLW+MA
Sbjct: 154 MVCTQNDTVPNIGIPVVMVSQSAGRKILSGMDGGAKVDILMYAPEKPSFDGAIPFLWLMA 213

Query: 61  VGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVAS 120
           VG++  A++WS +     D+    L  +E++         + E++++  K A+VF++ AS
Sbjct: 214 VGSVACASVWSFVVVGDEDKNAPTLGGEEAA---------DSEIVELQTKTALVFIVTAS 264

Query: 121 TFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSV 180
             L+ L+FF S+W  WLLVVLFC+ G++G+H +  TL++  C  C    V LP+L  V+V
Sbjct: 265 LVLLFLFFFKSTWSAWLLVVLFCLSGLQGLHYVASTLIVRTCDRCREAKVALPVLGNVTV 324

Query: 181 LSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAF 240
           ++LV+L   ++F VVWAV + + ++WVGQD++GIC+MI VLQ+  LPNIKVA+ LL  AF
Sbjct: 325 VTLVILPLALIFVVVWAVHQNSPFAWVGQDLMGICMMILVLQVVHLPNIKVATALLVSAF 384

Query: 241 VYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFP 300
           +YDIFWVF+SP IF +SVMI VARG +  G S+PM+L++P+ FD W GYDMIGFGDILFP
Sbjct: 385 MYDIFWVFISPFIFKKSVMITVARGSDE-GPSLPMVLKMPKEFDTWNGYDMIGFGDILFP 443

Query: 301 GLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTL 360
           GLL+ F+FRYD+ N K +  GYFL L+IGY FGL  TY+GLYLM   GQPALLYLVP TL
Sbjct: 444 GLLVAFSFRYDRANGKDLTDGYFLCLMIGYAFGLSCTYVGLYLMK-SGQPALLYLVPSTL 502

Query: 361 GLTVILGLARGELKHLWD 378
           G  V LG  RGEL  LW+
Sbjct: 503 GTIVTLGAKRGELSQLWN 520

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5F383|SPP2B_CHICK Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1

 Score =  208 bits (529), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 138/384 (35%), Positives = 213/384 (55%), Gaps = 30/384 (7%)

Query: 11  NISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALW 70
            I IPV ++  S  D L+   +  + V+  +YAPN P +D+ ++ +++MAVGT+     W
Sbjct: 131 EIDIPVALL--SYSDMLDIVKSFGRSVKGAMYAPNEPVLDYNMVIIFVMAVGTVAIGGYW 188

Query: 71  SLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFFM 130
           +   S    ERY +    + +      +  E E +D+T     VFV++  + LVLLYFF 
Sbjct: 189 A--GSRDVKERYMKHKRDDGA------EKHEDETVDVTPIMICVFVVMCCSMLVLLYFFY 240

Query: 131 SSWFVWLLVVLFCIGGIEGMHNIIVTLV----LSKCRNCGRKTVHLPLLDEVSVLSLVVL 186
               V++++ +FC+    G+++ +   V    L KCR       +     +V +L L V 
Sbjct: 241 DH-LVYVIIGIFCLAASIGLYSCLSPFVRRFPLGKCRIPDNNLPYFHKRPQVRILLLAV- 298

Query: 187 LFCVVFAVVWAV-RRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIF 245
            FC+  +VVW V R +  ++WV QD LGI   + +L+  RLP  K  ++LL   FVYD+F
Sbjct: 299 -FCISVSVVWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKGCTLLLLVLFVYDVF 357

Query: 246 WVFVSPLIFH--ESVMIAVARG--DNSGGESIPMLLRIPRL-FDPWG----GYDMIGFGD 296
           +VF++P +    ES+M+ VA G  D++  E +PM+L++PRL   P       + ++GFGD
Sbjct: 358 FVFITPFLTKTGESIMVEVAAGPSDSATHEKLPMVLKVPRLNSSPLALCDRPFSLLGFGD 417

Query: 297 ILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLV 356
           IL PGLL+ +  R+D + +   V  YF+   I YG GL +T++ L LM   GQPALLYLV
Sbjct: 418 ILVPGLLVAYCHRFDIQVQSSRV--YFVACTIAYGIGLLVTFVALALMQ-MGQPALLYLV 474

Query: 357 PCTLGLTVILGLARGELKHLWDYS 380
           PCTL  +  + L R EL   W  S
Sbjct: 475 PCTLITSFSVALWRKELAMFWTGS 498

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5PQL3|SPP2B_RAT Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 210/383 (54%), Gaps = 29/383 (7%)

Query: 11  NISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALW 70
            ISIPV ++  S  D  +        V + LYAP+ P +D+ ++ +++MAVGT+     W
Sbjct: 129 EISIPVALL--SHRDLQDIFRRFGHEVMVALYAPSEPVMDYNMVIIFIMAVGTVALGGYW 186

Query: 71  SLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFFM 130
           +        ++Y +         + V +  E E +D+T     VFV++    LVLLY+F 
Sbjct: 187 A---GSHDVKKYMK------HKRDDVPEKQEDEAVDVTPVMICVFVVMCCFMLVLLYYFY 237

Query: 131 SSWFVWLLVVLFCIGGIEGMHNIIVTLV--LSKCRNCGRKTVHLPLLDEVSVLSLVVL-L 187
               V++++ +FC+    G+++ +   V  L  C  C     +LP   +     +++L L
Sbjct: 238 DR-LVYVIIGIFCLASSTGLYSCLAPCVRKLPFC-TCRVPDNNLPYFHKRPQARMLLLAL 295

Query: 188 FCVVFAVVWAV-RRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFW 246
           FCV  +VVW V R +  ++WV QD LGI   + +L+  RLP  K  ++LL   FVYDIF+
Sbjct: 296 FCVTVSVVWGVFRNEDQWAWVLQDTLGIAFCLYMLRTIRLPTFKACTLLLLVLFVYDIFF 355

Query: 247 VFVSPLIFH--ESVMIAVARG--DNSGGESIPMLLRIPRL-FDPWG----GYDMIGFGDI 297
           VF++P +     S+M+ VA G  ++S  E +PM+L++PRL   P       + ++GFGDI
Sbjct: 356 VFITPYLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDI 415

Query: 298 LFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVP 357
           L PGLL+ +  R+D + +   +  YF+   I YG GL +T++ L LM  HGQPALLYLVP
Sbjct: 416 LVPGLLVAYCHRFDIQVQSSRI--YFVACTIAYGLGLLVTFVALVLMR-HGQPALLYLVP 472

Query: 358 CTLGLTVILGLARGELKHLWDYS 380
           CTL  +  + L R E+   W  S
Sbjct: 473 CTLLTSCTVALWRREMGAFWTGS 495

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. Functions in ITM2B and TNF processing. Catalyzes the intramembrane cleavage of the anchored fragment of shed TNF-alpha (TNF), which promotes the release of the intracellular domain (ICD) for signaling to the nucleus. May play a role in the regulation of innate and adaptive immunity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
225433716	533	PREDICTED: signal peptide peptidase-like	0.997	0.735	0.756	1e-173
224065040	540	predicted protein [Populus trichocarpa]	0.982	0.714	0.749	1e-173
118481059	540	unknown [Populus trichocarpa]	0.982	0.714	0.749	1e-173
356527443	530	PREDICTED: signal peptide peptidase-like	0.974	0.722	0.740	1e-170
449441173	541	PREDICTED: signal peptide peptidase-like	0.982	0.713	0.727	1e-168
356569121	530	PREDICTED: signal peptide peptidase-like	0.989	0.733	0.726	1e-168
297843376	536	hypothetical protein ARALYDRAFT_887775 [	1.0	0.733	0.686	1e-162
356534514	520	PREDICTED: signal peptide peptidase-like	0.969	0.732	0.715	1e-161
356575036	516	PREDICTED: signal peptide peptidase-like	0.966	0.736	0.723	1e-159
186478174	536	signal peptide peptidase-like 5 [Arabido	1.0	0.733	0.676	1e-159

>gi|225433716|ref|XP_002268575.1| PREDICTED: signal peptide peptidase-like 2B [Vitis vinifera] gi|296089635|emb|CBI39454.3| unnamed protein product [Vitis vinifera]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/395 (75%), Positives = 340/395 (86%), Gaps = 3/395 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVCSENDT +NI+IPV+MIPKS GD L+KSIAD ++VELLLYAP RP VD AV+FLWMMA
Sbjct: 140 MVCSENDTIVNITIPVVMIPKSGGDTLSKSIADGKKVELLLYAPTRPVVDSAVVFLWMMA 199

Query: 61  VGTIIAAALWS-LLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT++ A+LWS  +  EQ DERYNELSPK +S   A KDD EKEVLDI+AKGA+ FVI A
Sbjct: 200 VGTVVCASLWSEYIACEQNDERYNELSPK-ASEAGATKDDPEKEVLDISAKGAVGFVITA 258

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           STFLVLLYFFMSSWFVW+L+VLFCIGG+EGMH  IVTL+L  C+N  RKTV+LPL  EV+
Sbjct: 259 STFLVLLYFFMSSWFVWVLIVLFCIGGVEGMHACIVTLILRGCKNSERKTVNLPLFGEVT 318

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           VLSL VLLFC+ FA+ WA+ R+AS+SW+GQD+LGI LMITVLQ+ARLPNIKVASVLLCCA
Sbjct: 319 VLSLGVLLFCLSFAIAWAITRKASFSWIGQDVLGISLMITVLQIARLPNIKVASVLLCCA 378

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYDIFWVF+SP+IF +SVMIAVARGDNSGGESIPMLLR+PR FDPWGGYDMIGFGDILF
Sbjct: 379 FVYDIFWVFISPVIFKDSVMIAVARGDNSGGESIPMLLRVPRFFDPWGGYDMIGFGDILF 438

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLLI FAFR+DK NK+G+  GYFLWL IGYG GL  TYLGLYLMNGHGQPALLYLVPCT
Sbjct: 439 PGLLISFAFRFDKTNKRGMTNGYFLWLAIGYGCGLLFTYLGLYLMNGHGQPALLYLVPCT 498

Query: 360 LGLTVILGLARGELKHLWDYSRE-PSSDMNRPVEA 393
           LG+T+ILGL RGEL HLW++    P   + RP EA
Sbjct: 499 LGVTIILGLMRGELGHLWEHGTSVPIPILGRPGEA 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065040|ref|XP_002301641.1| predicted protein [Populus trichocarpa] gi|222843367|gb|EEE80914.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/387 (74%), Positives = 334/387 (86%), Gaps = 1/387 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           M C +  +A +ISIPV++IPKS G +LNKSI + Q+VELL YAP RP VD +VIFLW+MA
Sbjct: 147 MGCEKGTSAQDISIPVVLIPKSGGQSLNKSIVNGQKVELLFYAPVRPPVDLSVIFLWIMA 206

Query: 61  VGTIIAAALWS-LLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT++ A++WS +  SE+T+ERYNELSPKE+SN  A KDD+EKEV+DI  K AIVFVI A
Sbjct: 207 VGTVVCASVWSEIAASEETNERYNELSPKETSNASAFKDDTEKEVIDINVKSAIVFVITA 266

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           S FL+LLYFFMSSWFVWLL+VLFCIGGIEGMHN I T++L  CRNCGRK ++LPL  E S
Sbjct: 267 SAFLLLLYFFMSSWFVWLLIVLFCIGGIEGMHNCITTVILRICRNCGRKKLNLPLFGETS 326

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           + SL+VL+ CVVF+ VWA+ RQASYSW GQDILGICLMITVLQ+ARLPNIKVA+VLLCCA
Sbjct: 327 LFSLLVLICCVVFSTVWAINRQASYSWAGQDILGICLMITVLQVARLPNIKVATVLLCCA 386

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYDIFWVF+SP+IFH+SVMIAVARGDNSGGE+IPMLLRIPR  D WGGYDMIGFGDILF
Sbjct: 387 FVYDIFWVFLSPIIFHQSVMIAVARGDNSGGETIPMLLRIPRFADEWGGYDMIGFGDILF 446

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLL+ FAFRYDK NKKG+  GYFLWL IGYG GLFLTYLGLYLM+GHGQPALLYLVPCT
Sbjct: 447 PGLLVSFAFRYDKANKKGIANGYFLWLTIGYGVGLFLTYLGLYLMDGHGQPALLYLVPCT 506

Query: 360 LGLTVILGLARGELKHLWDYSREPSSD 386
           LGL ++LGL RGELK LW+YS E +S 
Sbjct: 507 LGLCILLGLVRGELKDLWNYSSEDASS 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481059|gb|ABK92483.1| unknown [Populus trichocarpa]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/387 (74%), Positives = 334/387 (86%), Gaps = 1/387 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           M C +  +A +ISIPV++IPKS G +LNKSI + Q+VELL YAP RP VD +VIFLW+MA
Sbjct: 147 MGCEKGTSAQDISIPVVLIPKSGGQSLNKSIVNGQKVELLFYAPVRPPVDLSVIFLWIMA 206

Query: 61  VGTIIAAALWS-LLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT++ A++WS +  SE+T+ERYNELSPKE+SN  A KDD+EKEV+DI  K AIVFVI A
Sbjct: 207 VGTVVCASVWSEIAASEETNERYNELSPKETSNASAFKDDTEKEVIDINVKSAIVFVITA 266

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           S FL+LLYFFMSSWFVWLL+VLFCIGGIEGMHN I T++L  CRNCGRK ++LPL  E S
Sbjct: 267 SAFLLLLYFFMSSWFVWLLIVLFCIGGIEGMHNCITTVILRICRNCGRKKLNLPLFGETS 326

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           + SL+VL+ CVVF+ VWA+ RQASYSW GQDILGICLMITVLQ+ARLPNIKVA+VLLCCA
Sbjct: 327 LFSLLVLICCVVFSTVWAINRQASYSWAGQDILGICLMITVLQVARLPNIKVATVLLCCA 386

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYDIFWVF+SP+IFH+SVMIAVARGDNSGGE+IPMLLRIPR  D WGGYDMIGFGDILF
Sbjct: 387 FVYDIFWVFLSPIIFHQSVMIAVARGDNSGGETIPMLLRIPRFADEWGGYDMIGFGDILF 446

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLL+ FAFRYDK NKKG+  GYFLWL IGYG GLFLTYLGLYLM+GHGQPALLYLVPCT
Sbjct: 447 PGLLVSFAFRYDKANKKGIANGYFLWLTIGYGVGLFLTYLGLYLMDGHGQPALLYLVPCT 506

Query: 360 LGLTVILGLARGELKHLWDYSREPSSD 386
           LGL ++LGL RGELK LW+YS E +S 
Sbjct: 507 LGLCILLGLVRGELKDLWNYSSEDASS 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527443|ref|XP_003532320.1| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/385 (74%), Positives = 332/385 (86%), Gaps = 2/385 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVCS N T  NISIPV+MI KS G +LNKS+    +VE+LLYAP RP VDF+V FLW+M+
Sbjct: 137 MVCS-NSTEANISIPVVMITKSAGQSLNKSLTSGSKVEILLYAPPRPLVDFSVAFLWLMS 195

Query: 61  VGTIIAAALWS-LLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           +GTI+ A+LWS L T E++DERYNEL PKESSN E  KDD +KE+++I +KGA++FVI A
Sbjct: 196 IGTIVCASLWSDLTTPEKSDERYNELCPKESSNAETAKDDLDKEIVNIDSKGAVIFVIAA 255

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           STFLVLL+FFMSSWFVW+L+VLFCIGGIEGMHN IV+L L KC+NCG+KTV LPL  E+S
Sbjct: 256 STFLVLLFFFMSSWFVWVLIVLFCIGGIEGMHNCIVSLTLRKCQNCGQKTVSLPLFGEIS 315

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           + SL VLLFCV FA+ WA  RQ SYSW+GQDILGICLMITVLQ+ARLPNIKVA+VLLCCA
Sbjct: 316 IFSLAVLLFCVAFAIFWAATRQESYSWIGQDILGICLMITVLQLARLPNIKVATVLLCCA 375

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYDIFWVF+SP+IFHESVMIAVARGD +GGE+IPMLLR PRLFDPWGGYDMIGFGDILF
Sbjct: 376 FVYDIFWVFISPVIFHESVMIAVARGDKAGGEAIPMLLRFPRLFDPWGGYDMIGFGDILF 435

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLLI FA R+DK+N++G   GYFLWL++GYG GL LTY+GLYLMNG+GQPALLYLVPCT
Sbjct: 436 PGLLISFAHRFDKDNRRGASNGYFLWLVVGYGIGLVLTYMGLYLMNGNGQPALLYLVPCT 495

Query: 360 LGLTVILGLARGELKHLWDYSREPS 384
           LG+TVILG  RGELK LW+Y  + S
Sbjct: 496 LGVTVILGCIRGELKSLWNYGTDSS 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441173|ref|XP_004138358.1| PREDICTED: signal peptide peptidase-like 5-like [Cucumis sativus]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/392 (72%), Positives = 329/392 (83%), Gaps = 6/392 (1%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVCSE DTALNISIPV+M+PKS GDAL+K I D + V+LLLYAP RP VDF+V+FLWMM+
Sbjct: 149 MVCSEKDTALNISIPVVMLPKSSGDALSKLITDGKSVKLLLYAPKRPVVDFSVVFLWMMS 208

Query: 61  VGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVAS 120
           VGT+  A LWS +T+EQT+ERYNELSPKESSN  A KDDSE E LDI  K AIVFVI AS
Sbjct: 209 VGTVACATLWSEITAEQTEERYNELSPKESSNPGAAKDDSENETLDINVKSAIVFVITAS 268

Query: 121 TFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSV 180
           +FLVLLYFFMSSWF+W+    F +GG+ GMH+ I+ L+L K ++CG+KT+ LP+L EVS+
Sbjct: 269 SFLVLLYFFMSSWFLWMDNRFFAVGGVGGMHSCILGLILRKGQSCGKKTLDLPVLGEVSI 328

Query: 181 LSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAF 240
           LSLVVLL C+ FAVVWA+ R ASYSW+GQ+ILGICLMITVLQM RLPNIKVA+VLLCCAF
Sbjct: 329 LSLVVLLCCITFAVVWALNRHASYSWIGQNILGICLMITVLQMTRLPNIKVATVLLCCAF 388

Query: 241 VYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFP 300
           +YDIFWVF+SP+IFHESVMIAVARGDNSGGESIPMLLR+PR FDPWGG+DMIGFGDILFP
Sbjct: 389 IYDIFWVFISPVIFHESVMIAVARGDNSGGESIPMLLRVPRTFDPWGGFDMIGFGDILFP 448

Query: 301 GLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTL 360
           GLL+ F  R+DK  KK     YF WL++GYG GLFLTYLGLY MNGHGQPALLYLVPCTL
Sbjct: 449 GLLVSFTRRFDKAQKKSKCNAYFPWLLVGYGTGLFLTYLGLYFMNGHGQPALLYLVPCTL 508

Query: 361 GLTVILGLARGELKHLWDYS------REPSSD 386
           G+TV+LG  RGELK LW+Y       REPS +
Sbjct: 509 GVTVVLGFIRGELKQLWNYGTENPVHREPSGE 540

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569121|ref|XP_003552754.1| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 284/391 (72%), Positives = 330/391 (84%), Gaps = 2/391 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVCS N +  NISIPV+MI KS G +LNKS     +VE+LLYAP RP VDF+V FLW+M+
Sbjct: 137 MVCS-NSSEANISIPVVMIAKSAGQSLNKSFTSGSKVEILLYAPPRPLVDFSVAFLWLMS 195

Query: 61  VGTIIAAALWS-LLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGTI+ A+LWS L T E++DERYN+L PKESSN E  KDD +KE+++I +KGA++FVI A
Sbjct: 196 VGTIVCASLWSDLTTPEKSDERYNKLCPKESSNAETEKDDLDKEIVNIDSKGAVIFVIAA 255

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           STFLVLL+FFMS+WFVW+L+VLFCIGGIEGMHN IV+L L KC+NCG+KTV LPL  E+S
Sbjct: 256 STFLVLLFFFMSTWFVWVLIVLFCIGGIEGMHNCIVSLTLRKCQNCGQKTVSLPLFGEIS 315

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           + SL VLLFCV FA+ WA  RQ SYSW GQDILGICLMITVLQ+ARLPNIKVA+VLLCCA
Sbjct: 316 IFSLAVLLFCVAFAIFWAATRQESYSWTGQDILGICLMITVLQLARLPNIKVATVLLCCA 375

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYDIFWVF+SP+IFHESVMIAVARGD +GGE+IPMLLR PRLFDPWGGYDMIGFGDILF
Sbjct: 376 FVYDIFWVFISPVIFHESVMIAVARGDKAGGEAIPMLLRFPRLFDPWGGYDMIGFGDILF 435

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLLI FA R+DK+N +G   GYFLWL++GYG GL LTYLGLYLMNG+GQPALLYLVPCT
Sbjct: 436 PGLLISFAHRFDKDNGRGASNGYFLWLVVGYGIGLVLTYLGLYLMNGNGQPALLYLVPCT 495

Query: 360 LGLTVILGLARGELKHLWDYSREPSSDMNRP 390
           LG+TVILG  RGEL+ LW+Y  + S     P
Sbjct: 496 LGVTVILGCIRGELESLWNYGTDSSLSTEPP 526

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843376|ref|XP_002889569.1| hypothetical protein ARALYDRAFT_887775 [Arabidopsis lyrata subsp. lyrata] gi|297335411|gb|EFH65828.1| hypothetical protein ARALYDRAFT_887775 [Arabidopsis lyrata subsp. lyrata]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/396 (68%), Positives = 329/396 (83%), Gaps = 3/396 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVC E DT+LNISIP+LMI  S GDAL KSI   ++VELLLYAP  P +D+AV+FLW+M+
Sbjct: 141 MVCGEKDTSLNISIPILMITTSSGDALKKSIMQNKKVELLLYAPKSPILDYAVVFLWLMS 200

Query: 61  VGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT+  A++WS  TS ++ DE+Y+ELSPK+SSN +A K  +E+E LDI+A GA++FVI A
Sbjct: 201 VGTVFVASVWSHFTSPKKNDEQYDELSPKKSSNDDATKGGAEEETLDISAMGAVIFVISA 260

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           STFLVLL+FFMSSWF+ +L + FCIGG++GMHNII TL+  +C  CG+K V LPLL   S
Sbjct: 261 STFLVLLFFFMSSWFILILTIFFCIGGMQGMHNIITTLITRRCNKCGQKNVKLPLLGNTS 320

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           +LSLVVLLFC V A++W ++R+ SY+W GQDI GIC+MI VLQ+ARLPNI+VA++LLCCA
Sbjct: 321 ILSLVVLLFCFVVAILWFMKRKTSYAWAGQDIFGICMMINVLQVARLPNIRVATILLCCA 380

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           F YDIFWVF+SPLIF +SVMIAVARG    GESIPMLLRIPRL DPWGGY+MIGFGDILF
Sbjct: 381 FFYDIFWVFLSPLIFKQSVMIAVARGSKDTGESIPMLLRIPRLSDPWGGYNMIGFGDILF 440

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLLICF FRYDKEN KGV  GYF WL+ GYG GLFLTYLGLY+MNGHGQPALLYLVPCT
Sbjct: 441 PGLLICFIFRYDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYVMNGHGQPALLYLVPCT 500

Query: 360 LGLTVILGLARGELKHLWDY-SREPS-SDMNRPVEA 393
           LG+TVILGL R EL+ LW+Y +++PS +D+N   EA
Sbjct: 501 LGITVILGLVRRELRDLWNYGTQQPSAADVNPSPEA 536

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534514|ref|XP_003535798.1| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/393 (71%), Positives = 331/393 (84%), Gaps = 12/393 (3%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           M CS NDT++NISIPV+ I KS GDALNK +  K++VE+LLYAP RP VD++V FLW+MA
Sbjct: 129 MECS-NDTSVNISIPVVEITKSTGDALNKLLTSKRKVEVLLYAPTRPVVDYSVAFLWLMA 187

Query: 61  VGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT+I A+LWS +T+ +Q DERYNELSPK SS  EA KDDSE ++++I  KGAI+FVI A
Sbjct: 188 VGTVICASLWSDITAPDQNDERYNELSPK-SSMSEAGKDDSE-DLVNIDTKGAIIFVITA 245

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           STFLVLL+FFMSSWF+W+L++LFCIGGIEGMHN IV+L L K   CG+KT++LP+  EVS
Sbjct: 246 STFLVLLFFFMSSWFIWVLIILFCIGGIEGMHNCIVSLALRKRPKCGQKTLNLPMFGEVS 305

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           + SLVVLLFCV+FAVVW   R+ S+SW GQD LGI LMITVLQ+ARLPNIKVA+VLLCCA
Sbjct: 306 IFSLVVLLFCVIFAVVWVATRRESFSWFGQDALGIGLMITVLQLARLPNIKVATVLLCCA 365

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYDIFWVF+SP+IF +SVMI VARGD +GGE+IPMLLR PRL DPWGGYDMIGFGDILF
Sbjct: 366 FVYDIFWVFISPVIFQKSVMITVARGDKAGGEAIPMLLRFPRLSDPWGGYDMIGFGDILF 425

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLL+ F  R+DK NKKGVV GYFLWL++GYGFGLF TYLGLY+MNGHGQPALLYLVPCT
Sbjct: 426 PGLLVSFTRRFDKANKKGVVSGYFLWLVVGYGFGLFFTYLGLYMMNGHGQPALLYLVPCT 485

Query: 360 LGLTVILGLARGELKHLWDYS--------REPS 384
           LG+TV+LG  RGELK+LW Y         +EPS
Sbjct: 486 LGVTVVLGCKRGELKYLWSYDADSSSSSSKEPS 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575036|ref|XP_003555648.1| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/383 (72%), Positives = 321/383 (83%), Gaps = 3/383 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           M CS N T +NISIPV+ I KS GD LNK +  K +VE+LLYAP RP VD++V FLW+MA
Sbjct: 131 MECS-NYTRINISIPVVEITKSTGDTLNKLLTSKSKVEILLYAPTRPVVDYSVAFLWLMA 189

Query: 61  VGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT+I A+LWS +T+ +QTDERYNELSPK     EA KDDSE ++++I  KGAIVFVI A
Sbjct: 190 VGTVICASLWSDITAPDQTDERYNELSPKVFPLSEAGKDDSE-DLVNIDTKGAIVFVITA 248

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           STFLVLL+FFMSSWF+W+L++LFCIGGIEGMHN IV+L L K   CG+KT +LP+  EVS
Sbjct: 249 STFLVLLFFFMSSWFIWVLIILFCIGGIEGMHNCIVSLALRKRPKCGQKTQNLPMFGEVS 308

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           + SLVVLLFCV+FAVVW   R  S+SW GQD LGI LMITVLQ+ARLPNIKVA+VLLCCA
Sbjct: 309 IFSLVVLLFCVIFAVVWVATRHESFSWFGQDTLGIGLMITVLQLARLPNIKVATVLLCCA 368

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           FVYDIFWVF+SP+IF +SVMI VARGD +GGE+IPMLLR PRL DPWGGYDMIGFGDILF
Sbjct: 369 FVYDIFWVFISPVIFQKSVMITVARGDKAGGEAIPMLLRFPRLSDPWGGYDMIGFGDILF 428

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLL+ FA R+DK NKKGV  GYFLWL+IGYGFGLF TYLGLY+MNGHGQPALLYLVPCT
Sbjct: 429 PGLLVSFARRFDKANKKGVASGYFLWLVIGYGFGLFFTYLGLYMMNGHGQPALLYLVPCT 488

Query: 360 LGLTVILGLARGELKHLWDYSRE 382
           LG+TV+LG  RGELK+LW Y  +
Sbjct: 489 LGVTVVLGCKRGELKYLWSYDAD 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478174|ref|NP_172073.2| signal peptide peptidase-like 5 [Arabidopsis thaliana] gi|75264901|sp|Q9MA44.1|SIPL5_ARATH RecName: Full=Signal peptide peptidase-like 5; Short=AtSPPL5; Flags: Precursor gi|6850311|gb|AAF29388.1|AC009999_8 Contains similarity to a vacuolar sorting receptor homolog from Arabidopsis thaliana gb|U79959 [Arabidopsis thaliana] gi|154425464|dbj|BAF74780.1| signal peptide peptidase [Arabidopsis thaliana] gi|332189777|gb|AEE27898.1| signal peptide peptidase-like 5 [Arabidopsis thaliana]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/396 (67%), Positives = 329/396 (83%), Gaps = 3/396 (0%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
           MVC E DT+LN+SIP+LMI  S GDAL KSI   ++VELLLYAP  P VD+AV+FLW+M+
Sbjct: 141 MVCGEKDTSLNVSIPILMITTSSGDALKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMS 200

Query: 61  VGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
           VGT+  A++WS +TS ++ DE+Y+ELSPK+SSN++A K  +E+E LDI+A GA++FVI A
Sbjct: 201 VGTVFVASVWSHVTSPKKNDEQYDELSPKKSSNVDATKGGAEEETLDISAMGAVIFVISA 260

Query: 120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVS 179
           STFLVLL+FFMSSWF+ +L + F IGG++GMHNI VTL+  +C  CG+K + LPLL   S
Sbjct: 261 STFLVLLFFFMSSWFILILTIFFVIGGMQGMHNINVTLITRRCSKCGQKNLKLPLLGNTS 320

Query: 180 VLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
           +LSLVVLLFC V A++W + R+ S++W GQDI GIC+MI VLQ+ARLPNI+VA++LLCCA
Sbjct: 321 ILSLVVLLFCFVVAILWFMNRKTSHAWAGQDIFGICMMINVLQVARLPNIRVATILLCCA 380

Query: 240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
           F YDIFWVF+SPLIF +SVMIAVARG    GESIPMLLRIPRL DPWGGY+MIGFGDILF
Sbjct: 381 FFYDIFWVFISPLIFKQSVMIAVARGSKDTGESIPMLLRIPRLSDPWGGYNMIGFGDILF 440

Query: 300 PGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCT 359
           PGLLICF FR+DKEN KGV  GYF WL+ GYG GLFLTYLGLY+MNGHGQPALLYLVPCT
Sbjct: 441 PGLLICFIFRFDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYVMNGHGQPALLYLVPCT 500

Query: 360 LGLTVILGLARGELKHLWDY-SREPS-SDMNRPVEA 393
           LG+TVILGL R EL+ LW+Y +++PS +D+N   EA
Sbjct: 501 LGITVILGLVRKELRDLWNYGTQQPSAADVNPSPEA 536

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
TAIR|locus:2198733	536	SPPL5 "SIGNAL PEPTIDE PEPTIDAS	1.0	0.733	0.601	7.6e-128
TAIR|locus:2040971	540	SPPL3 "SIGNAL PEPTIDE PEPTIDAS	0.974	0.709	0.618	1.6e-125
TAIR|locus:2026684	540	SPPL2 "SIGNAL PEPTIDE PEPTIDAS	0.452	0.329	0.584	1e-88
TAIR|locus:2198155	540	SPPL4 "SIGNAL PEPTIDE PEPTIDAS	0.966	0.703	0.472	1.2e-88
ZFIN|ZDB-GENE-030131-4265	564	sppl2 "signal peptide peptidas	0.447	0.312	0.393	3.5e-44
UNIPROTKB|Q5F383	596	SPPL2B "Signal peptide peptida	0.478	0.315	0.378	1.5e-43
UNIPROTKB|F1NRC1	596	SPPL2B "Signal peptide peptida	0.478	0.315	0.378	3.9e-43
UNIPROTKB|F1Q1B4	580	SPPL2B "Uncharacterized protei	0.447	0.303	0.377	5.2e-43
UNIPROTKB|F1S8G9	585	LOC100515648 "Uncharacterized	0.478	0.321	0.368	8.9e-43
UNIPROTKB|J9P0Q5	650	SPPL2B "Uncharacterized protei	0.447	0.270	0.377	1.1e-42

TAIR|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 238/396 (60%), Positives = 294/396 (74%)

Query:     1 MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
             MVC E DT+LN+SIP+LMI  S GDAL KSI   ++VELLLYAP  P VD+AV+FLW+M+
Sbjct:   141 MVCGEKDTSLNVSIPILMITTSSGDALKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMS 200

Query:    61 VGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
             VGT+  A++WS +TS ++ DE+Y+ELSPK+SSN++A K  +E+E LDI+A GA++FVI A
Sbjct:   201 VGTVFVASVWSHVTSPKKNDEQYDELSPKKSSNVDATKGGAEEETLDISAMGAVIFVISA 260

Query:   120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHXXXXXXXX 179
             STFLVLL+FFMSSWF+ +L + F IGG++GMHNI VTL+  +C  CG+K +         
Sbjct:   261 STFLVLLFFFMSSWFILILTIFFVIGGMQGMHNINVTLITRRCSKCGQKNLKLPLLGNTS 320

Query:   180 XXXXXXXXXXXXXXXXXXXRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
                                 R+ S++W GQDI GIC+MI VLQ+ARLPNI+VA++LLCCA
Sbjct:   321 ILSLVVLLFCFVVAILWFMNRKTSHAWAGQDIFGICMMINVLQVARLPNIRVATILLCCA 380

Query:   240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
             F YDIFWVF+SPLIF +SVMIAVARG    GESIPMLLRIPRL DPWGGY+MIGFGDILF
Sbjct:   381 FFYDIFWVFISPLIFKQSVMIAVARGSKDTGESIPMLLRIPRLSDPWGGYNMIGFGDILF 440

Query:   300 PGLLICFAFRYDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCT 359
             PGLLICF FR+DKEN KGV  GYF WL+                MNGHGQPALLYLVPCT
Sbjct:   441 PGLLICFIFRFDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYVMNGHGQPALLYLVPCT 500

Query:   360 LGLTVILGLARGELKHLWDY-SREPSS-DMNRPVEA 393
             LG+TVILGL R EL+ LW+Y +++PS+ D+N   EA
Sbjct:   501 LGITVILGLVRKELRDLWNYGTQQPSAADVNPSPEA 536

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
 Identities = 238/385 (61%), Positives = 280/385 (72%)

Query:     1 MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
             M C E DT+LN+SIPVLMI KS GDALNKS+ D + VELLLYAP RP VD     L +MA
Sbjct:   145 MGCMEKDTSLNVSIPVLMISKSSGDALNKSMVDNKNVELLLYAPKRPAVDLTAGLLLLMA 204

Query:    61 VGTIIAAALWSLLTS-EQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVA 119
             VGT++ A+LWS LT  +Q +E Y+ L+ K+ S+    KDD EKE+LDI+  GA+ F++ A
Sbjct:   205 VGTVVVASLWSELTDPDQANESYSILA-KDVSSAGTRKDDPEKEILDISVTGAVFFIVTA 263

Query:   120 STFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHXXXXXXXX 179
             S FL+LL++FMSSWFVW+L + FCIGG++GMHNII+ ++L KCR+  RK+V         
Sbjct:   264 SIFLLLLFYFMSSWFVWVLTIFFCIGGMQGMHNIIMAVILRKCRHLARKSVKLPLLGTMS 323

Query:   180 XXXXXXXXXXXXXXXXXXXRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA 239
                                +R  SYSWVGQDILGICLMIT LQ+ RLPNIKVA+VLLCCA
Sbjct:   324 VLSLLVNIVCLAFAVFWFIKRHTSYSWVGQDILGICLMITALQVVRLPNIKVATVLLCCA 383

Query:   240 FVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILF 299
             FVYDIFWVF+SPLIFHESVMI VA+GD+S GESIPMLLRIPR FDPWGGYDMIGFGDILF
Sbjct:   384 FVYDIFWVFISPLIFHESVMIVVAQGDSSTGESIPMLLRIPRFFDPWGGYDMIGFGDILF 443

Query:   300 PGLLICFAFRYDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCT 359
             PGLLI FA RYDK  K+ +  GYFLWL I               M+GHGQPALLY+VPCT
Sbjct:   444 PGLLISFASRYDKIKKRVISNGYFLWLTIGYGIGLLLTYLGLYLMDGHGQPALLYIVPCT 503

Query:   360 LGLTVILGLARGELKHLWDYSREPS 384
             LGL VILGL RGELK LW+Y  E S
Sbjct:   504 LGLAVILGLVRGELKELWNYGIEES 528

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005768 "endosome" evidence=TAS

TAIR|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
 Identities = 104/178 (58%), Positives = 127/178 (71%)

Query:   200 RQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVM 259
             R  S++W+GQD+LGI L+ITVLQ+  +PN+KV +VLL CAF+YDIFWVFVS  +FHESVM
Sbjct:   342 RVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVM 401

Query:   260 IAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVV 319
             I V RGD SG + IPMLL+IPR+FDPWGGY +IGFGDIL PGLLI FA RYD    K + 
Sbjct:   402 IVVTRGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLLIAFALRYDWLANKTLR 461

Query:   320 KGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCTLGLTVILGLARGELKHLW 377
              GYF+W ++               M+GHGQPALLY+VP TLG  + L   R +L  LW
Sbjct:   462 TGYFIWAMVAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTMLTLARKRDDLWILW 519

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

TAIR|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 183/387 (47%), Positives = 236/387 (60%)

Query:     1 MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMA 60
             MVC + +  L+I+IPV+M+P   G +L   +     V L LY+P RP VD A +FLW+MA
Sbjct:   143 MVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAVDVAEVFLWLMA 202

Query:    61 VGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVAS 120
             VGTI+ A+ WS  T  +     ++L    S  L  +   S + V+++T   AI+FV+VAS
Sbjct:   203 VGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTVISAILFVVVAS 262

Query:   121 TFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKC----RNCGRKTVHXXXXX 176
              FL++LY  MS WF+ +LVVLFCIGG+EG+   +V+L+   C    R  G   V      
Sbjct:   263 CFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLL--SCFRWFRRFGESYVKVPFLG 320

Query:   177 XXXXXXXXXXXXXXXXXXXXXXRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLL 236
                                   +RQ SY+W+GQDILGI L+ITVLQ+ R+PN+KV  VLL
Sbjct:   321 AVSYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVPNLKVGFVLL 380

Query:   237 CCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFDPWGGYDMIGFGD 296
              CAF+YDIFWVFVS   F ESVMI VARGD SG + IPMLL+IPR+FDPWGGY +IGFGD
Sbjct:   381 SCAFMYDIFWVFVSKWWFRESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSIIGFGD 440

Query:   297 ILFPGLLICFAFRYDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLV 356
             I+ PGLL+ FA RYD    K +  GYFL  +                M+GHGQPALLY+V
Sbjct:   441 IILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGHGQPALLYIV 500

Query:   357 PCTLGLTVILGLARGELKHLWDYSREP 383
             P  LG   +LG  RG+LK LW  + EP
Sbjct:   501 PFILGTLFVLGHKRGDLKTLWT-TGEP 526

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-4265 sppl2 "signal peptide peptidase-like 2" [Danio rerio (taxid:7955)]

 Score = 312 (114.9 bits), Expect = 3.5e-44, Sum P(2) = 3.5e-44
 Identities = 74/188 (39%), Positives = 106/188 (56%)

Query:   199 RRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFH--E 256
             R +  ++W+ QD LGI   + +L+  RLP  K  ++LL   FVYD+F+VF++PL+    E
Sbjct:   317 RNEDQWAWILQDALGIAFCLYMLKTIRLPTFKACTLLLVVLFVYDVFFVFITPLLTKSGE 376

Query:   257 SVMIAVARG--DNSGGESIPMLLRIPRL-FDPW----GGYDMIGFGDILFPGLLICFAFR 309
             S+M+ VA G  D+S  E +PM+L++PRL   P       + ++GFGDIL PGLL+ +  R
Sbjct:   377 SIMVEVAAGPSDSSTHEKLPMVLKVPRLNSSPLVLCDRPFSLLGFGDILVPGLLVAYCHR 436

Query:   310 YDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCTLGLTVILGLA 369
             +D   +   +  YFL   I               M   GQPALLYLVPCTL  ++ + L 
Sbjct:   437 FDILMQTSQI--YFLACTIGYGIGLLITFVALTLMQ-MGQPALLYLVPCTLLTSLAVALW 493

Query:   370 RGELKHLW 377
             R EL   W
Sbjct:   494 RKELPLFW 501

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0050819 "negative regulation of coagulation" evidence=IMP

UNIPROTKB|Q5F383 SPPL2B "Signal peptide peptidase-like 2B" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
 Identities = 76/201 (37%), Positives = 111/201 (55%)

Query:   199 RRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFH--E 256
             R +  ++WV QD LGI   + +L+  RLP  K  ++LL   FVYD+F+VF++P +    E
Sbjct:   311 RNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKGCTLLLLVLFVYDVFFVFITPFLTKTGE 370

Query:   257 SVMIAVARG--DNSGGESIPMLLRIPRL-FDPWG----GYDMIGFGDILFPGLLICFAFR 309
             S+M+ VA G  D++  E +PM+L++PRL   P       + ++GFGDIL PGLL+ +  R
Sbjct:   371 SIMVEVAAGPSDSATHEKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHR 430

Query:   310 YDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCTLGLTVILGLA 369
             +D + +   V  YF+   I               M   GQPALLYLVPCTL  +  + L 
Sbjct:   431 FDIQVQSSRV--YFVACTIAYGIGLLVTFVALALMQ-MGQPALLYLVPCTLITSFSVALW 487

Query:   370 RGELKHLWDYSREPSSDMNRP 390
             R EL   W  S   + D+ +P
Sbjct:   488 RKELAMFWTGSGF-AKDLPQP 507

GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISS

GO:0050776 "regulation of immune response" evidence=ISS

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISS

GO:0005765 "lysosomal membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0010008 "endosome membrane" evidence=ISS

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISS

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISS

UNIPROTKB|F1NRC1 SPPL2B "Signal peptide peptidase-like 2B" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 3.9e-43, Sum P(2) = 3.9e-43
 Identities = 76/201 (37%), Positives = 111/201 (55%)

Query:   199 RRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFH--E 256
             R +  ++WV QD LGI   + +L+  RLP  K  ++LL   FVYD+F+VF++P +    E
Sbjct:   311 RNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKGCTLLLLVLFVYDVFFVFITPFLTKTGE 370

Query:   257 SVMIAVARG--DNSGGESIPMLLRIPRL-FDPWG----GYDMIGFGDILFPGLLICFAFR 309
             S+M+ VA G  D++  E +PM+L++PRL   P       + ++GFGDIL PGLL+ +  R
Sbjct:   371 SIMVEVAAGPSDSATHEKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHR 430

Query:   310 YDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCTLGLTVILGLA 369
             +D + +   V  YF+   I               M   GQPALLYLVPCTL  +  + L 
Sbjct:   431 FDIQVQSSRV--YFVACTIAYGIGLLVTFVALALMQ-MGQPALLYLVPCTLITSFSVALW 487

Query:   370 RGELKHLWDYSREPSSDMNRP 390
             R EL   W  S   + D+ +P
Sbjct:   488 RKELAMFWTGSGF-AKDLPQP 507

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1Q1B4 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 71/188 (37%), Positives = 104/188 (55%)

Query:   199 RRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHE-- 256
             R +  ++WV QD LG+   + +L+  RLP  K  ++LL   FVYD+F+VF++P +     
Sbjct:   309 RNEDQWAWVLQDALGVAFCLYMLKTIRLPTFKACTLLLLVLFVYDVFFVFITPFLTKSGN 368

Query:   257 SVMIAVARG--DNSGGESIPMLLRIPRL-FDPWG----GYDMIGFGDILFPGLLICFAFR 309
             S+M+ VA G  D++  E +PM+L++PRL   P       + ++GFGDIL PGLL+ +  R
Sbjct:   369 SIMVEVATGPSDSATHEKLPMVLKVPRLNASPLALCDRPFSLLGFGDILVPGLLVAYCHR 428

Query:   310 YDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCTLGLTVILGLA 369
             +D + +   V  YF+   +               M   GQPALLYLVPCTL  +  L L 
Sbjct:   429 FDIQVQSSRV--YFVACTVAYGIGLLVTFMALALMQ-RGQPALLYLVPCTLITSCALALW 485

Query:   370 RGELKHLW 377
             R EL   W
Sbjct:   486 RRELGMFW 493

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1S8G9 LOC100515648 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 308 (113.5 bits), Expect = 8.9e-43, Sum P(2) = 8.9e-43
 Identities = 74/201 (36%), Positives = 109/201 (54%)

Query:   199 RRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHE-- 256
             R +  ++W+ QD LGI   +  L+  RLP  K  ++LL   F+YD+F+VF++P +     
Sbjct:   314 RNEDQWAWILQDALGIAFCLYTLKTIRLPTFKACTLLLLVLFIYDVFFVFITPFLTKSGN 373

Query:   257 SVMIAVARG--DNSGGESIPMLLRIPRL-FDPWG----GYDMIGFGDILFPGLLICFAFR 309
             S+M+ VA G  D++  E +PM+L++PRL   P       + ++GFGDIL PGLL+ +  R
Sbjct:   374 SIMVEVATGPSDSATHEKLPMVLKVPRLNASPLALCDRPFSLLGFGDILVPGLLVAYCHR 433

Query:   310 YDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCTLGLTVILGLA 369
             +D + +   V  YF+   I               M   GQPALLYLVPCTL  +  L L 
Sbjct:   434 FDIQVQSSRV--YFVACTIAYGIGLLVTFMALALMQ-RGQPALLYLVPCTLVTSCALALW 490

Query:   370 RGELKHLWDYSREPSSDMNRP 390
             R EL   W  S   + D+ +P
Sbjct:   491 RRELGMFWTGSGF-AKDLPQP 510

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|J9P0Q5 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 71/188 (37%), Positives = 104/188 (55%)

Query:   199 RRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHE-- 256
             R +  ++WV QD LG+   + +L+  RLP  K  ++LL   FVYD+F+VF++P +     
Sbjct:   379 RNEDQWAWVLQDALGVAFCLYMLKTIRLPTFKACTLLLLVLFVYDVFFVFITPFLTKSGN 438

Query:   257 SVMIAVARG--DNSGGESIPMLLRIPRL-FDPWG----GYDMIGFGDILFPGLLICFAFR 309
             S+M+ VA G  D++  E +PM+L++PRL   P       + ++GFGDIL PGLL+ +  R
Sbjct:   439 SIMVEVATGPSDSATHEKLPMVLKVPRLNASPLALCDRPFSLLGFGDILVPGLLVAYCHR 498

Query:   310 YDKENKKGVVKGYFLWLIIXXXXXXXXXXXXXXXMNGHGQPALLYLVPCTLGLTVILGLA 369
             +D + +   V  YF+   +               M   GQPALLYLVPCTL  +  L L 
Sbjct:   499 FDIQVQSSRV--YFVACTVAYGIGLLVTFMALALMQ-RGQPALLYLVPCTLITSCALALW 555

Query:   370 RGELKHLW 377
             R EL   W
Sbjct:   556 RRELGMFW 563

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MA44	SIPL5_ARATH	3, ., 4, ., 2, 3, ., -	0.6767	1.0	0.7332	yes	no
Q53P98	SIPL2_ORYSJ	3, ., 4, ., 2, 3, ., -	0.6443	0.9796	0.7209	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	393
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	1e-104
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	6e-65
cd02132	139	cd02132, PA_GO-like, PA_GO-like: Protease-associat	3e-15

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score =  309 bits (793), Expect = e-104
 Identities = 126/294 (42%), Positives = 162/294 (55%), Gaps = 19/294 (6%)

Query: 99  DSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVW------LLVVLFCIGGIEG-MH 151
            S++E   I ++ AI+F I AS  L+ LY F  S          +L   FCI G      
Sbjct: 1   KSKEETGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAF 60

Query: 152 NIIVTLV----LSKCRNCGRKTVHLPL-LDEVSVLSLVVLLFCVVFAVVWAVRRQASYSW 206
            I+   +            +K   L L     +   LV LL C+VFAV W V R+    W
Sbjct: 61  LILPPCIRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRK--EHW 118

Query: 207 VGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGD 266
           + QDILGI L I V+++ RLPN+KV ++LL   F YDIFWVF+SP IF  SVM+ VA G 
Sbjct: 119 ILQDILGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGP 178

Query: 267 NSGGESIPMLLRIPRLFD---PWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYF 323
               E +PM L  PRL D    WG + M+G GDI+ PGLLI F  R+D   K    + YF
Sbjct: 179 FDAAEKLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDIS-KNKSSRTYF 237

Query: 324 LWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLW 377
           +  +I YG GL +T++ L L     QPALLYLVPCTLG  +++ L RGELK LW
Sbjct: 238 ISTMIAYGLGLLITFVALNLFK-AAQPALLYLVPCTLGTLLLVALWRGELKKLW 290

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score =  207 bits (528), Expect = 6e-65
 Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 29/273 (10%)

Query: 103 EVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKC 162
           E   + +  AIVF IVA+  LVLLY F     + +LV+ F   G+  +++++  L + + 
Sbjct: 1   EYSLLNSLVAIVFPIVATFVLVLLYKFFKYLVI-VLVIYFSSLGVLFLYSLLYPLEVFR- 58

Query: 163 RNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQ 222
                          V   +L++LL        W + R+   +W+ QD++GI L + +L 
Sbjct: 59  ---------------VDYPTLLILLLNFAVVGFWCIHRK--GAWIQQDLIGISLCMAILF 101

Query: 223 MARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRL 282
           + RLP+   A +LL   F+YDIF VF +P      VM+ VA G +   +  P LL +PRL
Sbjct: 102 ILRLPSEWTAWILLGALFIYDIFAVFGTP--GPLRVMVEVATGRDEPIKVFPALLYVPRL 159

Query: 283 -----FDPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLT 337
                 D    + M+G GDI+FPG+L+  A R+D          YFL   + YG GL LT
Sbjct: 160 VVSFEDDEEERFSMLGLGDIVFPGILVASAARFD--VSVRSDSNYFLACFVAYGIGLILT 217

Query: 338 YLGLYLMNGHGQPALLYLVPCTLGLTVILGLAR 370
            + L L     QPAL YLVP TL   ++  L R
Sbjct: 218 LVLLALFK-KAQPALPYLVPFTLVFYLLTALLR 249

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 28/41 (68%), Positives = 36/41 (87%)

Query: 1   MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLL 41
           MVC +NDT+LNISIPV+MIP+S GDALNKS+   ++VE+LL
Sbjct: 99  MVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
KOG2442	541	consensus Uncharacterized conserved protein, conta	100.0
KOG2443	362	consensus Uncharacterized conserved protein [Funct	100.0
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	100.0
PF06550	283	DUF1119: Protein of unknown function (DUF1119); In	99.72
COG3389	277	Uncharacterized protein conserved in archaea [Func	99.43
KOG2736	406	consensus Presenilin [Signal transduction mechanis	93.98
PF01080	403	Presenilin: Presenilin Alzheimer disease; InterPro	93.67
cd02127	118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	91.99
cd04816	122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	88.2
cd02130	122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	87.79
cd04818	118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	86.4

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=100.00  E-value=1.9e-112  Score=858.03  Aligned_cols=380  Identities=49%  Similarity=0.912  Sum_probs=355.6

Q ss_pred             CccCCCCCccccCceEEEeechhhhHHHHhhhcCCeEEEEEecCCCCCcchhHHHHHHHHHHHHHHhhhhhccc-chhhh
Q 016196            1 MVCSENDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAVIFLWMMAVGTIIAAALWSLLT-SEQTD   79 (393)
Q Consensus         1 m~c~~~~~~~~i~Ipv~~~~~~~~~~l~~~~~~g~~v~v~ly~p~~p~~d~s~v~l~lmAv~tV~~Gs~wS~~~-~~~~~   79 (393)
                      |+|.++++..|++|||+||+++||++++++.+++++|+++||||++|.+|+|+++||+||||||++|||||+++ +|+..
T Consensus       135 ~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~  214 (541)
T KOG2442|consen  135 MPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAI  214 (541)
T ss_pred             CCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999 77666


Q ss_pred             HhhhhcCCCcCCccccccccCccceeecCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016196           80 ERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVL  159 (393)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~a~~Fpv~as~~Ll~LY~f~~~~~~~vl~~~F~i~g~~~l~~~l~~~~~  159 (393)
                      |+++.++++.+ ++++++|++|||..++|+.+|+.|++++|++|+++|||++ +++|+++++||++|..|||+|+.++++
T Consensus       215 ~a~~~~~d~~s-~~~~~~~~~e~~~vd~s~i~~~~fvv~~c~~LvLlyfF~~-~~V~v~iiif~i~g~~gLy~Cl~~lv~  292 (541)
T KOG2442|consen  215 EADRLLDDDSS-SEGNTKETKEEEVVDISPITAVFFVVTACGFLVLLYFFYS-YLVYVLIIIFCIGGAQGLYNCLAALVH  292 (541)
T ss_pred             hhhhhcccccc-cccccccCCccccEEeeeeEEEEehhhhHHHHHHHHHHHH-HHHHHHhhheeecccchHHHHHHHHHh
Confidence            66666654433 2335667788999999999999999999999999999995 599999999999999999999999999


Q ss_pred             hhhccCCCceeeccccccchhHHHHHHHHHHHHHhhhhhhcccccchhhhhHHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 016196          160 SKCRNCGRKTVHLPLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCA  239 (393)
Q Consensus       160 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~i~~i~l~s~k~~~iLL~~l  239 (393)
                      |++.+..+.+...|..|+.+++.+++.++|++++++|+++|||+|+|++||++|||+|++++|.+|+||+|+|++||+++
T Consensus       293 r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~  372 (541)
T KOG2442|consen  293 RLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCL  372 (541)
T ss_pred             hhhhhcccccccccccCChhHHHHHHHHhhhheeEEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            98765444555677788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhccccc--ccceeeeecccCCCCCCCCCEEEEecccc-----CCCCccccccCCCcchhhHHHHHHHhhhc
Q 016196          240 FVYDIFWVFVSPLIF--HESVMIAVARGDNSGGESIPMLLRIPRLF-----DPWGGYDMIGFGDILFPGLLICFAFRYDK  312 (393)
Q Consensus       240 f~YDiF~VF~tp~~f--g~sVMv~VA~~~~~~~~~lP~~l~~P~~~-----~~~~~~s~LGlGDIviPGllia~~~rfD~  312 (393)
                      |+|||||||+||++|  |||||++||+|+++++|++||++++||++     +++++|||||||||++||++||||+|||.
T Consensus       373 f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~EkiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~  452 (541)
T KOG2442|consen  373 FLYDIFFVFITPFITKNGESVMIEVARGPSSTEEKIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDV  452 (541)
T ss_pred             HHHhhheeeeehhhccCCceEEEEEecCCCCCCCCcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhh
Confidence            999999999999999  79999999999999999999999999999     78999999999999999999999999999


Q ss_pred             ccccCccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHHHHHHhchhhhccccccCCC
Q 016196          313 ENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSREPS  384 (393)
Q Consensus       313 ~~~~~~~~~YF~~~~igY~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~A~~rgEl~~~W~~~~~~~  384 (393)
                      +.++. ++.||.++++||++||++||+|+++| |.|||||||||||||++.+.+|++|||++++|+|..+..
T Consensus       453 ~~~~~-~~iYfv~~tvaYgiGLlvTfvaL~LM-~~GQPALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~  522 (541)
T KOG2442|consen  453 QVNSV-SNIYFVWSTVAYGIGLLVTFVALVLM-KGGQPALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQK  522 (541)
T ss_pred             hcccc-ceeEEehhHHHHHHHHHHHHHHHHHh-cCCCceEEEEechHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            98874 68999999999999999999999999 779999999999999999999999999999999988543

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-71  Score=542.31  Aligned_cols=310  Identities=28%  Similarity=0.519  Sum_probs=263.2

Q ss_pred             CcchhHHHHHHHHHHHHHHhhhhhcccchhhhHhhhhcCCCcCCccccccccCccceeecCcccchh-hhHHHHHHHHHH
Q 016196           48 DVDFAVIFLWMMAVGTIIAAALWSLLTSEQTDERYNELSPKESSNLEAVKDDSEKEVLDITAKGAIV-FVIVASTFLVLL  126 (393)
Q Consensus        48 ~~d~s~v~l~lmAv~tV~~Gs~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~a~~-Fpv~as~~Ll~L  126 (393)
                      .+|.+++.+.+||+.+|++||+||....+     .             .||+ +|+.+++|.++|.- ||+++||+|++|
T Consensus        22 ~~~~~~~sl~l~A~l~i~~GsfRS~~~~~-----~-------------~~d~-~~~~es~t~~~a~~~fPi~~s~tLl~l   82 (362)
T KOG2443|consen   22 LLASAYVSLILIALLLIVIGSFRSLNYIK-----E-------------NEDK-KDKSESITKRDAGKMFPIIGSCTLLLL   82 (362)
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHhhhhh-----h-------------hhcc-cchhhhhhhhhhcccCCcccchHHHHH
Confidence            68899999999999999999999996511     0             0111 24556788888888 999999999999


Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccC---------CCceeeccccccchhHHHHHHHHHH
Q 016196          127 YFFMSSW---FVWLLVVLFCIGGIEGMHNIIVTLVLS----KCRNC---------GRKTVHLPLLDEVSVLSLVVLLFCV  190 (393)
Q Consensus       127 Y~f~~~~---~~~vl~~~F~i~g~~~l~~~l~~~~~~----~~~~~---------~~~~~~~p~~~~~~~~~l~~~~~~~  190 (393)
                      |++++..   ...+++.||++.|+.++.+.+.|+++.    ..|.+         ...+...-+.++++..+++....|.
T Consensus        83 yl~fk~ls~~~~~ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~  162 (362)
T KOG2443|consen   83 YLLFKPLSKELINLLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLFPRGPGEKKEFICNGKFTRAQIVALVLSS  162 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheeeeccCCcccceeecccccHHHHHHHHHHH
Confidence            9988643   233789999999999999999999982    12222         1111112234578889999999999


Q ss_pred             HHHhhhhhhcccccchhhhhHHHHHHHHHHHHhcccCchhHHHHHHHHHHHhhhhhhhhcccccccceeeeecccCCCCC
Q 016196          191 VFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNSGG  270 (393)
Q Consensus       191 ~~~~~w~~~~~~~~~Wil~nilgi~~~i~~i~~i~l~s~k~~~iLL~~lf~YDiF~VF~tp~~fg~sVMv~VA~~~~~~~  270 (393)
                      .+++.|+..+|    |++||++|+++|+++++.+||||+|+|++||.++|+|||||||      |++|||+|||+.|   
T Consensus       163 ~i~v~~ll~~H----Wl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVF------gTnVMVtVAt~~D---  229 (362)
T KOG2443|consen  163 MIVVWYLLTKH----WLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVF------GTNVMVTVATSLD---  229 (362)
T ss_pred             HHHHHHHhhhH----HHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEe------cCceEEEeecccC---
Confidence            99999988885    9999999999999999999999999999999999999999999      6779999999965   


Q ss_pred             CCCCEEEEeccccCCC----CccccccCCCcchhhHHHHHHHhhhccccc-CccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 016196          271 ESIPMLLRIPRLFDPW----GGYDMIGFGDILFPGLLICFAFRYDKENKK-GVVKGYFLWLIIGYGFGLFLTYLGLYLMN  345 (393)
Q Consensus       271 ~~lP~~l~~P~~~~~~----~~~s~LGlGDIviPGllia~~~rfD~~~~~-~~~~~YF~~~~igY~~GL~~t~~~l~~~~  345 (393)
                        +|+|+++|+.....    .+|||||+||||+||+|+|+++|||.++++ +..+.||+.+++||.+||+.|+++|+.+ 
T Consensus       230 --~PikL~fP~~l~~~~~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~t~i~Y~~gL~~ti~~~~~F-  306 (362)
T KOG2443|consen  230 --APIKLVFPQKLLFPGLTASNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHNTFIAYFLGLLTTIVVLHIF-  306 (362)
T ss_pred             --CceEEecchhhccCCCccccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEEeHHHHHhhhHHHhhhhhhh-
Confidence              79999999976432    359999999999999999999999987653 2457899999999999999999999999 


Q ss_pred             CCCcceehhhchhhhHHHHHHHHHhchhhhccccccCCCCCCCCCCC
Q 016196          346 GHGQPALLYLVPCTLGLTVILGLARGELKHLWDYSREPSSDMNRPVE  392 (393)
Q Consensus       346 ~~~QPALLYLvP~~L~~~~~~A~~rgEl~~~W~~~~~~~~~~~~~~~  392 (393)
                      |++||||||+||+|+++.+++|++|||++.+|+++++..+|.++..|
T Consensus       307 kaAQPALLYlVP~~l~~~ll~A~~~gdlk~l~s~~~~~~~~~~~~~e  353 (362)
T KOG2443|consen  307 KAAQPALLYLVPACLGPLLLMAYWRGDLKVLWSFDESTKEESAEQDE  353 (362)
T ss_pred             hccchhhhhhhHHHHhHHHHHHHHccchHhhhCccccCCCCcHHHHh
Confidence            99999999999999999999999999999999999987777665544

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.2e-72  Score=552.19  Aligned_cols=274  Identities=43%  Similarity=0.825  Sum_probs=1.0

Q ss_pred             ccceeecCcccchhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCce
Q 016196          101 EKEVLDITAKGAIVFVIVASTFLVLLYFFMSSWF------VWLLVVLFCIGGIEGMHNIIVTLVLSKCRN-----CGRKT  169 (393)
Q Consensus       101 ~~~~~~it~~~a~~Fpv~as~~Ll~LY~f~~~~~------~~vl~~~F~i~g~~~l~~~l~~~~~~~~~~-----~~~~~  169 (393)
                      ||+.+++|++||++||++||++|++||+++|.+.      +++++.+|+++|+.++..++.+.+.+.++.     ..+.+
T Consensus         2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~~~~~~~~~~   81 (298)
T PF04258_consen    2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLTYIFPFFPCRSFPWKK   81 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccce
Confidence            4556789999999999999999999999987554      468999999999999888877776654331     11222


Q ss_pred             eec--------cccccchhHHHHHHHHHHHHHhhhhhhcccccchhhhhHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 016196          170 VHL--------PLLDEVSVLSLVVLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFV  241 (393)
Q Consensus       170 ~~~--------p~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~i~~i~l~s~k~~~iLL~~lf~  241 (393)
                      .++        +..++++..++++.++|+++++.|+++||+  +|++||++|+|+|+++++.+|+||+|++++||+++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~--~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~  159 (298)
T PF04258_consen   82 WKLSFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNE--HWILQNILGICFCINIISLIRLPSFKTATILLIGLFL  159 (298)
T ss_dssp             ---------------------------------S----------------------------------------------
T ss_pred             EEEEEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccc--hHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHH
Confidence            222        345567888899999999999999998876  6999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccccccceeeeecccCCCCCCCCCEEEEeccccC----CCCccccccCCCcchhhHHHHHHHhhhcccccC
Q 016196          242 YDIFWVFVSPLIFHESVMIAVARGDNSGGESIPMLLRIPRLFD----PWGGYDMIGFGDILFPGLLICFAFRYDKENKKG  317 (393)
Q Consensus       242 YDiF~VF~tp~~fg~sVMv~VA~~~~~~~~~lP~~l~~P~~~~----~~~~~s~LGlGDIviPGllia~~~rfD~~~~~~  317 (393)
                      |||||||+||++||+|||++||++..++++++|+|+++|+..+    ..+++||||+||||+||+|+++|+|||++++++
T Consensus       160 YDif~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~  239 (298)
T PF04258_consen  160 YDIFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRNKS  239 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhccc
Confidence            9999999999999999999999995445678999999999863    457899999999999999999999999988432


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHHHHHHhchhhhccc
Q 016196          318 VVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELKHLWD  378 (393)
Q Consensus       318 ~~~~YF~~~~igY~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~A~~rgEl~~~W~  378 (393)
                       +++||.++++||++||++|+++++++ |+||||||||||+|+++++++|++|||++++||
T Consensus       240 -~~~Yf~~~~~~Y~~Gl~~t~~~~~~~-~~~QPALlylvP~~l~~~~~~a~~r~el~~~w~  298 (298)
T PF04258_consen  240 -RKPYFIASLIGYALGLLLTFVALHLF-KHGQPALLYLVPCTLGSVLLVAWIRGELKDFWN  298 (298)
T ss_dssp             -------------------------------------------------------------
T ss_pred             -cchHHHHHHHHHHHHHHHHHHHHHHh-CCCCCeehHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence             36799999999999999999999999 999999999999999999999999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=100.00  E-value=1.7e-53  Score=409.15  Aligned_cols=242  Identities=39%  Similarity=0.634  Sum_probs=216.0

Q ss_pred             eecCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeeccccccchhHHHH
Q 016196          105 LDITAKGAIVFVIVASTFLVLLYFFMSSWFVWLLVVLFCIGGIEGMHNIIVTLVLSKCRNCGRKTVHLPLLDEVSVLSLV  184 (393)
Q Consensus       105 ~~it~~~a~~Fpv~as~~Ll~LY~f~~~~~~~vl~~~F~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  184 (393)
                      +.+|+++++.||+++|++|+++|++++.+ ++.+.++||++|+.+++.++.+.....                .+..+.+
T Consensus         3 ~~~n~~~~i~fii~~s~~Ll~Ly~~~~~~-~i~~~~~f~~~~~~~~~~~~~~~~~~~----------------~~~~~~~   65 (249)
T smart00730        3 SLLNSLVAIVFPIVATFVLVLLYKFFKYL-VIVLVIYFSSLGVLFLYSLLYPLEVFR----------------VDYPTLL   65 (249)
T ss_pred             ccccHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHHH
Confidence            46899999999999999999999999765 888899999999999999988765432                2334556


Q ss_pred             HHHHHHHHHhhhhhhcccccchhhhhHHHHHHHHHHHHhcccCchhHHHHHHHHHHHhhhhhhhhcccccccceeeeecc
Q 016196          185 VLLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLPNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVAR  264 (393)
Q Consensus       185 ~~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~i~~i~l~s~k~~~iLL~~lf~YDiF~VF~tp~~fg~sVMv~VA~  264 (393)
                      ...+++++..+|.+++|  ++|+.||++|+++|+++++.+|+||+|++++||+++++||+||||+||.  |++||++||+
T Consensus        66 ~~~~~~~v~~~~~~~~~--~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~--~~~vMv~vA~  141 (249)
T smart00730       66 ILLLNFAVVGFWCIHRK--GAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEVAT  141 (249)
T ss_pred             HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCC--CchHHhhHhc
Confidence            77788899999998886  7899999999999999999999999999999999999999999999997  9999999999


Q ss_pred             cCCCCCCCCCEEEEecccc-----CCCCccccccCCCcchhhHHHHHHHhhhcccccCccchhHHHHHHHHHHHHHHHHH
Q 016196          265 GDNSGGESIPMLLRIPRLF-----DPWGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYL  339 (393)
Q Consensus       265 ~~~~~~~~lP~~l~~P~~~-----~~~~~~s~LGlGDIviPGllia~~~rfD~~~~~~~~~~YF~~~~igY~~GL~~t~~  339 (393)
                      +.+++.|++|+++..||..     +..+++++||+||||+||+++++|+|||...++  ++.||..|++||++||+.|++
T Consensus       142 ~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~--~~~yf~~~~~ay~~GL~~t~~  219 (249)
T smart00730      142 GRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRS--DSNYFLACFVAYGIGLILTLV  219 (249)
T ss_pred             cCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccC--CcccHHHHHHHHHHHHHHHHH
Confidence            9764335789999999842     234689999999999999999999999987543  368999999999999999999


Q ss_pred             HHHHhcCCCcceehhhchhhhHHHHHHHHHh
Q 016196          340 GLYLMNGHGQPALLYLVPCTLGLTVILGLAR  370 (393)
Q Consensus       340 ~l~~~~~~~QPALLYLvP~~L~~~~~~A~~r  370 (393)
                      +++.+ |+|||||+|+||+++++.++.|+.|
T Consensus       220 ~l~~~-~~aqPALlylvp~~l~~~~~~~~~r  249 (249)
T smart00730      220 LLALF-KKAQPALPYLVPFTLVFYLLTALLR  249 (249)
T ss_pred             HHHHh-CCCCccHHHHHHHHHHHHHHHHHhC
Confidence            99999 8999999999999999999999976

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function

Probab=99.72  E-value=3.8e-16  Score=151.36  Aligned_cols=172  Identities=24%  Similarity=0.300  Sum_probs=130.4

Q ss_pred             HHHHHHHHhhhhhhcccccchhhhhHHHHHHHHHHHHhcccC-chhHHHHHHHHHHHhhhhhhhhcccccccceeeeecc
Q 016196          186 LLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLP-NIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVAR  264 (393)
Q Consensus       186 ~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~i~~i~l~-s~k~~~iLL~~lf~YDiF~VF~tp~~fg~sVMv~VA~  264 (393)
                      ...++++.+..+ .++   .|+..|+.|+.++..+...+.+. ++-.+.+||..+-+||..-||.|+      +|++.|+
T Consensus        96 ~~~ai~~~~~L~-~yp---EWYviD~~Gil~~aG~aaiFGISl~~lpaiiLL~iLAVYDaISVYkTk------HMltLAe  165 (283)
T PF06550_consen   96 LILAIALTALLY-KYP---EWYVIDIAGILMGAGAAAIFGISLGILPAIILLAILAVYDAISVYKTK------HMLTLAE  165 (283)
T ss_pred             HHHHHHHHHHHH-hcc---hHHHHHHHHHHHHhHHHHHHhhhccHHHHHHHHHHHHHhhhhheecch------HHHHHHH
Confidence            334444444433 444   49999999999998877766655 666799999999999999999555      9999999


Q ss_pred             cCCCCCCCCCEEEEeccccCC--------------CCccccccCCCcchhhHHHHHHHhhhcccccCccchhHHHHHHHH
Q 016196          265 GDNSGGESIPMLLRIPRLFDP--------------WGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGY  330 (393)
Q Consensus       265 ~~~~~~~~lP~~l~~P~~~~~--------------~~~~s~LGlGDIviPGllia~~~rfD~~~~~~~~~~YF~~~~igY  330 (393)
                      |.-  +.|+|+.+++|+..+.              +|+-.++|+||.++|.++++-+..|.....-...+-.-+.+++|-
T Consensus       166 gv~--d~klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~~~~~~~~lpalga~~Gt  243 (283)
T PF06550_consen  166 GVM--DLKLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSAPILGGLNLPALGAMLGT  243 (283)
T ss_pred             HHh--ccCCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccccchhhhhHHHHHHHHHH
Confidence            975  4689999999997532              134579999999999999999999975532111122335667777


Q ss_pred             HHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHHHHHHhc
Q 016196          331 GFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARG  371 (393)
Q Consensus       331 ~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~A~~rg  371 (393)
                      .+|+.+-...  ++++++||+|.||.-..+++.++-++..|
T Consensus       244 l~gl~vL~~~--v~kgrp~aGLP~LN~GaI~Gflig~l~sg  282 (283)
T PF06550_consen  244 LAGLAVLLRF--VMKGRPQAGLPFLNGGAIAGFLIGALASG  282 (283)
T ss_pred             HHHHHHHHHH--HHcCCCCCCCCccchhHHHHHHHHHHHcC
Confidence            7777766542  34689999999999999999988877654

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.43  E-value=1.1e-12  Score=123.80  Aligned_cols=161  Identities=25%  Similarity=0.373  Sum_probs=123.1

Q ss_pred             HHHHhhhhhhcccccchhhhhHHHHHHHHHHHHhcccC-chhHHHHHHHHHHHhhhhhhhhcccccccceeeeecccCCC
Q 016196          190 VVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARLP-NIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVARGDNS  268 (393)
Q Consensus       190 ~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~i~~i~l~-s~k~~~iLL~~lf~YDiF~VF~tp~~fg~sVMv~VA~~~~~  268 (393)
                      .+++.++..+++.  .|+..|..|.+++...-..+.+. ..-.+..||..+-+||..-|+      +|.+|++.|++.- 
T Consensus        98 ~aI~~~~lL~~~p--eWyVid~ag~~la~Giaai~GIsfgv~pavvlL~~lavYDaIsVY------kT~HMIslA~~v~-  168 (277)
T COG3389          98 LAIGLVYLLYKYP--EWYVIDLAGFFLAVGIAAIFGISFGVLPAVVLLIALAVYDAISVY------KTRHMISLAEGVM-  168 (277)
T ss_pred             HHHHHHHhhhhcc--ceEEeehHHHHHHhhHHHhheeecchHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHH-
Confidence            3444444444332  59999999999998877665554 444588999999999999999      5559999999964 


Q ss_pred             CCCCCCEEEEeccccCC-----------CCccccccCCCcchhhHHHHHHHhhhcccccCccchhHH--HHHHHHHHHHH
Q 016196          269 GGESIPMLLRIPRLFDP-----------WGGYDMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFL--WLIIGYGFGLF  335 (393)
Q Consensus       269 ~~~~lP~~l~~P~~~~~-----------~~~~s~LGlGDIviPGllia~~~rfD~~~~~~~~~~YF~--~~~igY~~GL~  335 (393)
                       +.++||++++|...+.           +++--|+|+||+++|-++++-+.-|-.+..     .+|.  .++.|-.+|+.
T Consensus       169 -d~~lPmlfviP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~s~~-----l~f~~Lpal~GglvGl~  242 (277)
T COG3389         169 -DLDLPMLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLISPI-----LAFIVLPALAGGLVGLA  242 (277)
T ss_pred             -hcCCceEEEeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhccCCc-----hhhhhHHHHhccHHHHH
Confidence             3589999999965321           467789999999999999999988865442     3333  36888899988


Q ss_pred             HHHHHHHHhcCCCcceehhhchhhhHHHHHHHH
Q 016196          336 LTYLGLYLMNGHGQPALLYLVPCTLGLTVILGL  368 (393)
Q Consensus       336 ~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~A~  368 (393)
                      +-..   ++.+++||.|.|+.-.++.+.++-+.
T Consensus       243 vL~~---v~r~Rp~pGLP~lN~GaIaGflig~V  272 (277)
T COG3389         243 VLYF---VNRGRPHPGLPFLNTGAIAGFLIGFV  272 (277)
T ss_pred             HHHH---HhcCCCCCCCceeccchHHHHHHHHH
Confidence            7744   34489999999999999888776544

>KOG2736 consensus Presenilin [Signal transduction mechanisms]

Probab=93.98  E-value=0.048  Score=55.81  Aligned_cols=68  Identities=29%  Similarity=0.391  Sum_probs=54.3

Q ss_pred             ccccCCCcchhhHHHHHHHhhhcccccCccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHHHH
Q 016196          290 DMIGFGDILFPGLLICFAFRYDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILG  367 (393)
Q Consensus       290 s~LGlGDIviPGllia~~~rfD~~~~~~~~~~YF~~~~igY~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~A  367 (393)
                      --||+||.|+=-+++.=+.-+|...     .+  ++|.+|-.+||.+|...+.++ |++-|||..  |.+++.++-.+
T Consensus       320 ikLGlGDFIFYSvLvGkAa~~~d~~-----Tv--iAC~vaIL~GL~~TL~llsv~-~kALPALPi--sI~~G~iFYF~  387 (406)
T KOG2736|consen  320 IKLGLGDFIFYSVLVGKAAAYGDLN-----TV--IACFVAILIGLCLTLLLLSVF-KKALPALPI--SITFGLIFYFS  387 (406)
T ss_pred             eeeccCceEEEEeeccchhhcCChH-----HH--HHHHHHHHHHHHHHHHHHHHH-hhcCcCCch--HHHHHHHHHHH
Confidence            3599999998887777776666221     12  589999999999999999999 899999987  77777776544

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.67  E-value=0.17  Score=52.67  Aligned_cols=64  Identities=31%  Similarity=0.424  Sum_probs=47.2

Q ss_pred             cccCCCcchhhHHHHHHHhh-hcccccCccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHH
Q 016196          291 MIGFGDILFPGLLICFAFRY-DKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVI  365 (393)
Q Consensus       291 ~LGlGDIviPGllia~~~rf-D~~~~~~~~~~YF~~~~igY~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~  365 (393)
                      -||+||.|+=+++++-+.++ |.        .-..+|++|-.+||.+|...+..+ +++-|||.-  +.+++.++-
T Consensus       327 klGlGDFiFYs~Lvg~aa~~~~~--------~~~~~~~~ail~Gl~~Tl~~l~~~-~~alPALPi--si~~g~~~y  391 (403)
T PF01080_consen  327 KLGLGDFIFYSVLVGRAAMYGDW--------NTVVACFVAILIGLCLTLLLLAIF-RKALPALPI--SIALGLIFY  391 (403)
T ss_dssp             SS-TTTHHHHHHHHHHHHHH-TT--------TTHHHHHHHHHHHHHHHHHHHHHH-T-S-SSSSS------HHHHH
T ss_pred             eecchhHHHHHHHHhHHHhcCCH--------HHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcH--HHHHHHHHH
Confidence            59999999999999988876 43        224689999999999999999998 899999975  555555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)

Probab=91.99  E-value=0.18  Score=43.62  Aligned_cols=31  Identities=13%  Similarity=0.144  Sum_probs=27.6

Q ss_pred             ccccCceEEEeechhhhHHHHhhhcCCeEEE
Q 016196            9 ALNISIPVLMIPKSRGDALNKSIADKQRVEL   39 (393)
Q Consensus         9 ~~~i~Ipv~~~~~~~~~~l~~~~~~g~~v~v   39 (393)
                      ..+++||+++|+++||..|++.+..|..+..
T Consensus        84 ~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~  114 (118)
T cd02127          84 SRRADIPAAFLLGKNGYMIRKTLERLGLPYA  114 (118)
T ss_pred             CCCceEEEEEecHHHHHHHHHHHHcCCceEE
Confidence            3578999999999999999999998988754

This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)

Probab=88.20  E-value=0.55  Score=40.28  Aligned_cols=31  Identities=29%  Similarity=0.552  Sum_probs=28.2

Q ss_pred             cccCceEEEeechhhhHHHHhhhcCCeEEEE
Q 016196           10 LNISIPVLMIPKSRGDALNKSIADKQRVELL   40 (393)
Q Consensus        10 ~~i~Ipv~~~~~~~~~~l~~~~~~g~~v~v~   40 (393)
                      .+.+||+++|+++||+.|.+.+..|.+|++.
T Consensus        91 ~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~  121 (122)
T cd04816          91 IDLKVPVGVITKAAGAALRRRLGAGETLELD  121 (122)
T ss_pred             CCCeeeEEEEcHHHHHHHHHHHcCCCEEEEe
Confidence            4678999999999999999999999998875

This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)

Probab=87.79  E-value=0.48  Score=40.62  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             cccCceEEEeechhhhHHHHhhhcCCeEEEEE
Q 016196           10 LNISIPVLMIPKSRGDALNKSIADKQRVELLL   41 (393)
Q Consensus        10 ~~i~Ipv~~~~~~~~~~l~~~~~~g~~v~v~l   41 (393)
                      .+..||++.|+++||+.|.+.++.|++|++.|
T Consensus        91 ~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~  122 (122)
T cd02130          91 SGPYVPTVGISQEDGKALVAALANGGEVSANL  122 (122)
T ss_pred             CCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence            46789999999999999999999999998864

This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1

Probab=86.40  E-value=0.75  Score=39.06  Aligned_cols=32  Identities=38%  Similarity=0.620  Sum_probs=28.6

Q ss_pred             cccCceEEEeechhhhHHHHhhhcCCeEEEEE
Q 016196           10 LNISIPVLMIPKSRGDALNKSIADKQRVELLL   41 (393)
Q Consensus        10 ~~i~Ipv~~~~~~~~~~l~~~~~~g~~v~v~l   41 (393)
                      .+..||+++++++|+++|.+.++.|++|++.|
T Consensus        87 ~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~  118 (118)
T cd04818          87 PDITIPAVMISQADGDALKAALAAGGTVTVTL  118 (118)
T ss_pred             CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence            35689999999999999999999899998864

A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
4hyg_A	301	Putative uncharacterized protein; protease, membra	99.94
2kr6_A	176	Presenilin-1; protease, alternative splicing, alzh	96.55

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A

Probab=99.94  E-value=1.5e-27  Score=229.50  Aligned_cols=174  Identities=21%  Similarity=0.279  Sum_probs=122.2

Q ss_pred             HHHHHHHHhhhhhhcccccchhhhhHHHHHHHHHHHHhccc--CchhHHHHHHHHHHHhhhhhhhhcccccccceeeeec
Q 016196          186 LLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARL--PNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVA  263 (393)
Q Consensus       186 ~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~i~~i~l--~s~k~~~iLL~~lf~YDiF~VF~tp~~fg~sVMv~VA  263 (393)
                      ...++++++..+.+.    +|+..|+.|+++|..+...+.+  ..+ .+.+||+++.+||.+|||.|+      +|+++|
T Consensus       108 ~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtLA  176 (301)
T 4hyg_A          108 LIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITLA  176 (301)
T ss_dssp             HHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHT
T ss_pred             HHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHHH
Confidence            344555655555555    4999999999999998886555  666 899999999999999999555      999999


Q ss_pred             ccCCCCCCCCCEEEEeccccC-------------CCCccccccCCCcchhhHHHHHHHhhhccccc-CccchhHHHHHHH
Q 016196          264 RGDNSGGESIPMLLRIPRLFD-------------PWGGYDMIGFGDILFPGLLICFAFRYDKENKK-GVVKGYFLWLIIG  329 (393)
Q Consensus       264 ~~~~~~~~~lP~~l~~P~~~~-------------~~~~~s~LGlGDIviPGllia~~~rfD~~~~~-~~~~~YF~~~~ig  329 (393)
                      +|.-  +.|+|+++++|+..+             .+++..++|+||+++|+++++.+.|||..... ...+.-+..+++|
T Consensus       177 egvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lPalgA~~G  254 (301)
T 4hyg_A          177 EGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAPTLGAMVG  254 (301)
T ss_dssp             TTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCSCHHHHHH
T ss_pred             Hhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccchHHHHHHH
Confidence            9964  358999999998432             14678899999999999999999999964431 1011238899999


Q ss_pred             HHHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHHHHHHhchhh
Q 016196          330 YGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELK  374 (393)
Q Consensus       330 Y~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~A~~rgEl~  374 (393)
                      |.+||.++...  ++++++||.|.||++.++++.++.++.+||+.
T Consensus       255 t~~Gl~vLl~~--V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          255 SLVGLAVLLYF--VNKGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             HHHHHHHHHHH--HTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHH--HHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence            99999999762  33599999999999999999999999999987

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=96.55  E-value=0.0035  Score=56.51  Aligned_cols=66  Identities=29%  Similarity=0.348  Sum_probs=53.7

Q ss_pred             ccccCCCcchhhHHHHHHH--h-hhcccccCccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHHH
Q 016196          290 DMIGFGDILFPGLLICFAF--R-YDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVIL  366 (393)
Q Consensus       290 s~LGlGDIviPGllia~~~--r-fD~~~~~~~~~~YF~~~~igY~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~  366 (393)
                      --|||||.|+=+++++-+.  + .|..        -..+|++|..+||.+|.+.+.++ +++-|||..  |..++.++-.
T Consensus        88 ikLGLGDFIFYSvLVgkAa~~~~~d~~--------t~~ac~vaIL~GL~~TL~lLa~~-~~aLPALPi--SI~lG~~fyf  156 (176)
T 2kr6_A           88 VKLGLGDFIFYSVLVGKASATASGDWN--------TTIACFVAILIGLCLTLLLLAIF-KKALPALPI--SITFGLVFYF  156 (176)
T ss_dssp             CSSCTTTHHHHHHHHHHHHHHSCCTTT--------THHHHHHHHHHHHHHHHHHHHHH-TCSCSSSSS--CCCCHHHHHH
T ss_pred             ccccccCeeehHHHHHHHHHhhccCHH--------HHHHHHHHHHHHHHHHHHHHhhh-cccCCCCcH--HHHHHHHHHH
Confidence            4599999999999999887  5 3542        35789999999999999999998 899999986  5566655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00