Citrus Sinensis ID: 016199

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MPNSMPESVSADTSSSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARAII
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccEEEEcccccEEEEEccccEEEEEEccccccccEEEEEEcccccccEEEEcccccccccEEEEEEEcccEEEEEEcccEEEEEccccccEEcccccEEEcccccEEEEcccccccccccEEcccccccccEEEEEccccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEcccccccEEEEEEccccccccEEEcccccEEEEEcccccHHHHHHHcccHHHHHHHHHHHHccccccccccEEEEEEcccccEEEEEEccccccEEEEEEEccEEEEEEccccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccccccEEEcccccEEEEEccccEEEEEEcccccccccEEEEccccccccEEEEcccccccccccEEEEEccccEEEEccccEEEEEcccccccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEcccEccccEEEcccccEEEEEEccHHHEEEEEEcccccccEHHHHcccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHcHHHHcccccccccEEEEEEcccccEEEEEEcccccEEEEEEEEccEEEEEccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
mpnsmpesvsadtsssssssrLWLVTVFLTGGPVFLAMLVYKldsfdpapipvhefthppltaALRNERMlqgsekvgygvlkgpedllyDAHSKLIYTgcedgwikrvtlndspadslvhnwintggrplgiafansdpdadRITMIVADAYKGLLKisgnstvlltdeaegqkfkltdgvdvaddgmiyftdasnkYYLREYILDIfegkpngrllsfdpvtkETKVLVSDLYFangvvlspdqthlVYCETSMRRCRKFYIKGKNAGRVEKFIEtlpglpdnirydgeGHYLIALATEFSTywdlayrypfirKVSGMVVRYlgmppmgksssgvfivdldgkpiahyydpemslISSAIKigdhlycgsvhhrgilhldvnqhparaii
Flexible Loop (DISEMBL)
mpnsmpesvsadtsssssssrLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLltdeaegqkfkltdgvdvaddgMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAngvvlspdqtHLVYCETSMRRCRKFYikgknagrvekFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRgilhldvnqhparaii
Low Complexity Region (SEG)
MPNSMPESVSADTsssssssRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARAII
Disordered region (IsUnstruct)
*********************LWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVN********
Disordered Region (DISOPRED)
***********************LVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA*A**
Disordered Region (DISEMBL)
********************RLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARAII
Disordered Region (DISPRO)
*****************SSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNSMPESVSADTSSSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARAII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.918	0.869	0.311	8e-38
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.900	0.859	0.319	5e-37
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.854	0.893	0.311	2e-35
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.908	0.860	0.303	2e-35
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.681	0.644	0.347	4e-35
Q803F5	415	Adipocyte plasma membrane	yes	no	0.921	0.872	0.297	2e-34
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.921	0.870	0.297	5e-34
P94111	335	Strictosidine synthase 1	no	no	0.529	0.620	0.304	8e-19
P92976	329	Strictosidine synthase 3	no	no	0.529	0.632	0.283	9e-16
P68175	344	Strictosidine synthase OS	N/A	no	0.539	0.616	0.256	9e-12

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 206/421 (48%), Gaps = 60/421 (14%)

Query: 6   PESVSADTSS------SSSSSRLWLVTVFLTGGPVFLAML--VYKLDS-FDPAPIPVHEF 56
           P+ ++ D+ +      S+ SS+++ VT       + + +L     LD   DP PI + E 
Sbjct: 15  PQVITEDSPAQEAKEGSAYSSKVFRVTFLTLAASLAVPLLGATVLLDCPIDPQPISLKE- 73

Query: 57  THPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLND--- 113
             P LT  L     LQ +E++    L GPE ++      +++TG  DG I ++   +   
Sbjct: 74  -PPLLTGVLEPNNKLQKAERLWENQLVGPESIVNIGD--VLFTGTADGKILKIEDGEVQT 130

Query: 114 ----------SPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI---S 160
                     +P D        T GRPLGI    ++      T+ VADAY GL ++   +
Sbjct: 131 VARIGHGPCGTPEDE------PTCGRPLGIRVGPNN------TLFVADAYYGLYEVNPGT 178

Query: 161 GNSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRL 217
           G + +L++ +   EGQK    + + V  DG  IYFTD+S+K+  R+++  + EG  +GRL
Sbjct: 179 GETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRL 238

Query: 218 LSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE 277
           L +D VTKE KVL+  L F NGV LSP +  ++  ET+M R R++Y+ G   G  + F+E
Sbjct: 239 LEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVE 298

Query: 278 TLPGLPDNIRYDGEGHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMG 332
            +PGLPDNIR    G Y +A+        FS   D     P+I++   M+ + L    + 
Sbjct: 299 NMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSML-DFLSEKPWIKR---MIFKLLSQETVT 354

Query: 333 K---SSSGVFIVDLDGKPIAHYYDP---EMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 386
           K     S V  +   G     ++DP    +  +S A +   +LY GS     I  L++ Q
Sbjct: 355 KLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL-Q 413

Query: 387 H 387
           H
Sbjct: 414 H 414

Gallus gallus (taxid: 9031)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  155 bits (392), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 195/401 (48%), Gaps = 47/401 (11%)

Query: 3   NSMPESVSADTSSSSSSSRLWLVTVFLTGGPVFLAML--VYKLDS-FDPAPIPVHEFTHP 59
           N  PE+       SS S R++  T  +    + + +L  +  LDS  DP P+    F  P
Sbjct: 22  NRTPEA----KGGSSFSGRVFRATFLMLAAFLTIPLLGALVLLDSPIDPEPL---SFKEP 74

Query: 60  PL-TAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS 118
           PL    L+    LQ +E++    L GPE +       +++TG  DG +  V L +   ++
Sbjct: 75  PLFLGVLQPNTKLQQAERLFENQLVGPESIANIGD--VMFTGTADGRV--VKLENGEVET 130

Query: 119 LVHNWINTG-----------GRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNST 164
           +      +G           GRPLGI    + P+    T+ V DAYKGL +++       
Sbjct: 131 IAR--FGSGPCKTRDDEPACGRPLGI---RAGPNG---TLFVVDAYKGLFEVNPWKREVK 182

Query: 165 VLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFD 221
           +LL+ E   EG+K    + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D
Sbjct: 183 LLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYD 242

Query: 222 PVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG 281
             TKE KVL+  L F NGV LSP +  ++  E +M R R+FY+ G   G  + F+E LPG
Sbjct: 243 TQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPG 302

Query: 282 LPDNIRYDGEGHYLIALATEFS----TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSG 337
            PDNIR    G Y +++A   +    +  D     PF++KV   +     +       S 
Sbjct: 303 FPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSL 362

Query: 338 VFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVH 375
           V  +   G  +   +DPE   ++ +S A +   HLY GS  
Sbjct: 363 VLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFR 403

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 184/379 (48%), Gaps = 43/379 (11%)

Query: 33  PVFLAMLVYKLDSFDPAPIPVHEFTHPP-LTAALRNERMLQGSEKVGYGVLKGPEDLLYD 91
           P+  AM++ +    DP       F  PP +   L+    L+ +E++    L GPE ++  
Sbjct: 13  PLLGAMMLLE-SPIDPQSF---SFKEPPFMFGVLQPNTKLRQAERLFENQLNGPESIV-- 66

Query: 92  AHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN---------TGGRPLGIAFANSDPDA 142
               +++TG  DG +  V L +   +++               T GRPLGI      P+ 
Sbjct: 67  NIGDVLFTGTADGRV--VKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVG---PNG 121

Query: 143 DRITMIVADAYKGLLKISGNS---TVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDAS 196
              T+ V DAYKGL +++       +LL+ E   EG+K    + + +  DG  IYFTD+S
Sbjct: 122 ---TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSS 178

Query: 197 NKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM 256
           +K+  R+Y+L + EG  +GRLL +D VTKE KVL+  L F NGV LSP++  ++  ET+M
Sbjct: 179 SKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAM 238

Query: 257 RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS----TYWDLAYRY 312
            R R+ Y+ G   G  + F+E +PG PDNIR    G Y +A AT  +    +  D     
Sbjct: 239 ARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDK 298

Query: 313 PFIRKVSGMVVRYLGMPPMGK---SSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDH- 368
           PFI++   M+ +      + K     S V  V   G      +DP+  +++   +  +H 
Sbjct: 299 PFIKR---MIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHD 355

Query: 369 --LYCGSVHHRGILHLDVN 385
             LY GS     I  L + 
Sbjct: 356 GYLYLGSFRSPFICRLSLQ 374

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 189/396 (47%), Gaps = 39/396 (9%)

Query: 16  SSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPP-LTAALRNERMLQGS 74
           SS S R++ +T  +    + + +L   +    P       F  PP +   L     L+ +
Sbjct: 31  SSFSGRVFRMTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLHPNTKLRQA 90

Query: 75  EKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--------- 125
           E++    L GPE ++      +++TG  DG +  V L +   +++               
Sbjct: 91  ERLFENQLSGPESIVNIGD--VLFTGTADGRV--VKLENGEIETIARFGSGPCKTRDDEP 146

Query: 126 TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS---TVLLTDEA--EGQKFKLTD 180
           T GRPLGI    + P+    T+ V DAYKGL +++       +LL+ E   EG+K    +
Sbjct: 147 TCGRPLGI---RAGPNG---TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVN 200

Query: 181 GVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG 239
            + V  DG  IYFTD+S+K+  R+Y+L + E   +GRLL +D VTKE KVL+  L F NG
Sbjct: 201 DLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNG 260

Query: 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299
           V LSP++  ++  ET+M R R+ Y+ G   G  + F+E +PG PDNIR    G Y +A A
Sbjct: 261 VQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAA 320

Query: 300 TEFS----TYWDLAYRYPFIRKVSGMVVRYLGMPPMGK---SSSGVFIVDLDGKPIAHYY 352
           T  +    +  D     PFI++   M+ +      + K     S V  V   G      +
Sbjct: 321 TIRANPGFSMLDFLSDKPFIKR---MIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLH 377

Query: 353 DPEMSLISSAIKIGDH---LYCGSVHHRGILHLDVN 385
           DP+  +++   +  +H   LY GS     I  L + 
Sbjct: 378 DPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQ 413

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 162/308 (52%), Gaps = 40/308 (12%)

Query: 16  SSSSSRLWLVTVFLTGG----PVFLAMLVYKLDSFDPAPIPVHEFTHPPLT-AALRNERM 70
           SS S R++ VT  +       P+  AM++ +    DP P+    F  PPL    L     
Sbjct: 32  SSFSGRVFRVTFLMLAVSLTVPLLGAMMLLE-SPIDPQPL---SFKEPPLLLGVLHPNTK 87

Query: 71  LQGSEKVGYGVLKGPEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG-- 127
           L+ +E++    L GPE +   AH   +++TG  DG +  V L +   +++      +G  
Sbjct: 88  LRQAERLFENQLVGPESI---AHIGDVMFTGTADGRV--VKLENGEIETIAR--FGSGPC 140

Query: 128 ---------GRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNSTVLLTDEA--EG 173
                    GRPLGI    + P+    T+ VADAYKGL +++       +LL+ E   EG
Sbjct: 141 KTRDDEPVCGRPLGI---RAGPNG---TLFVADAYKGLFEVNPWKREVKLLLSSETPIEG 194

Query: 174 QKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232
           +     + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D VT+E KVL+ 
Sbjct: 195 KNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLD 254

Query: 233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG 292
            L F NGV LSP +  ++  ET+M R R+ Y+ G   G  + F+E +PG PDNIR    G
Sbjct: 255 QLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSG 314

Query: 293 HYLIALAT 300
            Y + ++T
Sbjct: 315 GYWVGMST 322

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 193/397 (48%), Gaps = 35/397 (8%)

Query: 14  SSSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPL-TAALRNERMLQ 72
           ++S+ S +++ VT+      + L +LV       P    V     PPL T        L+
Sbjct: 29  ATSTYSGKVFRVTLLTMVAFLLLPLLVVVFVLESPIQPEVFSLNEPPLMTGCYEPNLKLR 88

Query: 73  GSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRV---------TLNDSPADSLVHNW 123
            +E++    L GPE L       + YTG  DG I ++         T+   P  S  H  
Sbjct: 89  QAERLFEERLVGPESLANIG--DVFYTGTADGKIVKIEGRNIHVLATIGKPPCGSREHE- 145

Query: 124 INTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI---SGNSTVLLTDEAE--GQKFKL 178
            +T GRPLGI      P+    T+ VADAY GL ++   +G    L++ E    G++   
Sbjct: 146 -HTCGRPLGIRVG---PNG---TLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGF 198

Query: 179 TDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237
            + +DV  DG  +YFTD+S+++  R+++  I E   +GR+L +D  TKE  V++ +L F 
Sbjct: 199 VNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFP 258

Query: 238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA 297
           NG+ L PD+  ++  ET+M R ++ ++ G N G ++ FIE LPG PDNIR    G Y +A
Sbjct: 259 NGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVA 318

Query: 298 LAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYY 352
           ++       FS   D   + P+++K+   +     +       S V  +  DG  +  ++
Sbjct: 319 MSAVRPNPGFSM-LDFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQSDGTCVRSFH 377

Query: 353 DPE---MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 386
           DP+    +  S A +   HLY GS     +  LD+++
Sbjct: 378 DPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLSK 414

Danio rerio (taxid: 7955)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 192/396 (48%), Gaps = 34/396 (8%)

Query: 15  SSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERM-LQG 73
           +S+ S +++ V +   GG + L +LV       P    +   + PPL +        L+ 
Sbjct: 30  TSTYSGKVFRVILVTLGGCLILPLLVVFFLLESPIHPELLSLSEPPLMSGCYEPNFKLRE 89

Query: 74  SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVT---------LNDSPADSLVHNWI 124
           ++++    L GPE +       LIYTG  DG I ++          L   P D       
Sbjct: 90  AQRLFEDQLVGPESIA--NFGDLIYTGTADGKIVKIEGKSITVIARLGKPPCDG-SREQE 146

Query: 125 NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI---SGNSTVLLT--DEAEGQKFKLT 179
            + GRPLGI      P+    T+ VADAY GL K+   +G  T L++      G++    
Sbjct: 147 PSCGRPLGIRVG---PNG---TLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFV 200

Query: 180 DGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN 238
           + +DV  DG  +YFTD+S+++  R+Y+  I E   +GR+L +D  TKE  VL+ +L FAN
Sbjct: 201 NDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFAN 260

Query: 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIAL 298
           G+ L PD+  ++  ET+M R R+ ++ G N G ++ F++ LPG PDNIR    G Y +A+
Sbjct: 261 GIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAM 320

Query: 299 AT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD 353
           +       FS   D   + P+I+K+   +     +       S V  +   G  +  ++D
Sbjct: 321 SAVRPNPGFSML-DFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACMRSFHD 379

Query: 354 PE---MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 386
           P     + +S A +   HLY GS     +  LD+++
Sbjct: 380 PHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLSK 415

Salmo salar (taxid: 8030)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 25/233 (10%)

Query: 84  GPEDLLYDAHSKLIYTGC----------EDGWIKRVTLNDSPADSLVHNWINTG-----G 128
           GPE   +D+  K  YTG           E G++    + +S   S     I T      G
Sbjct: 38  GPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCDGTIGTALAGRCG 97

Query: 129 RPLGIAFANSDPDADRITMIVADAYKGLLKIS--GNSTVLLTDEAEGQKFKLTDGVDV-A 185
           RP GIAF     D     + VADA  GL  IS  G     +TD  +G+ FK  DG+DV  
Sbjct: 98  RPAGIAFNEKTGD-----LYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDP 152

Query: 186 DDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPD 245
             G++YFT  S+++   + ++ +      G+L  +DP TK   VL+  L  + G  +S D
Sbjct: 153 TTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSD 212

Query: 246 QTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE-GHYLIA 297
            + ++  + +    ++++IKG  AG  E F  ++   PDNI+  G  G++ +A
Sbjct: 213 GSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSN-PDNIKRIGSTGNFWVA 264

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 25/233 (10%)

Query: 84  GPEDLLYDAHSKLIYTGC----------EDGWIKRVTLNDSPADSLVHNWINTG-----G 128
           GPE   +D+  K  YTG           + G++    + +S   SL    + T      G
Sbjct: 40  GPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCDGALGTTNVEKCG 99

Query: 129 RPLGIAFANSDPDADRITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFKLTDGVDV-A 185
           RP GIAF     D     + VADA  GL  I   G     + D   G+ F   DG+DV  
Sbjct: 100 RPAGIAFNTKTGD-----LYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDP 154

Query: 186 DDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPD 245
             G++YFT  S+ +  R+ +  +      G+   +DP  K   VL+  L  + G  +S D
Sbjct: 155 TTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSD 214

Query: 246 QTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE-GHYLIA 297
            + ++  + +    ++++IKG  AG  E F  ++   PDNI+  G  G++ +A
Sbjct: 215 GSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSN-PDNIKRIGSTGNFWVA 266

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 26/238 (10%)

Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV--------------HNWINTGGR 129
            P    +D+ +K  YT  +DG   RV   + P    V               N  +   R
Sbjct: 42  APNSFTFDSTNKGFYTSVQDG---RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKR 98

Query: 130 PLGIAFANSDPDADRITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFKLTDGVDVAD- 186
           PL     +   +     + + D Y  L  +   G     L    +G  FK    V V   
Sbjct: 99  PLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 158

Query: 187 DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244
            G++YFTD S  Y  R  + I+D       GRL+ +DP TKET +L+ +L+   G  +S 
Sbjct: 159 TGIVYFTDVSTLYDDRGVQQIMDT--SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 216

Query: 245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302
           D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E 
Sbjct: 217 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 272

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
359476906	383	PREDICTED: adipocyte plasma membrane-ass	0.916	0.939	0.6	1e-122
297744900	820	unnamed protein product [Vitis vinifera]	0.916	0.439	0.6	1e-122
297744903	417	unnamed protein product [Vitis vinifera]	0.949	0.894	0.577	1e-121
225468656	383	PREDICTED: adipocyte plasma membrane-ass	0.949	0.973	0.577	1e-121
147838242	383	hypothetical protein VITISV_018383 [Viti	0.916	0.939	0.597	1e-121
224081469	357	predicted protein [Populus trichocarpa]	0.900	0.991	0.594	1e-120
359476892	383	PREDICTED: adipocyte plasma membrane-ass	0.949	0.973	0.556	1e-119
297744909	457	unnamed protein product [Vitis vinifera]	0.961	0.827	0.563	1e-118
147808646	383	hypothetical protein VITISV_037416 [Viti	0.916	0.939	0.583	1e-117
297744905	539	unnamed protein product [Vitis vinifera]	0.961	0.701	0.558	1e-117

>gi|359476906|ref|XP_002264366.2| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/370 (60%), Positives = 277/370 (74%), Gaps = 10/370 (2%)

Query: 24  LVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLK 83
           L+ + LT  PV  A+ +Y+LDSFDPA +P HEF+  P+     N RMLQGSE +G G L 
Sbjct: 22  LLVLILT--PVAAAIFLYQLDSFDPASLPTHEFSQEPMPVPKLNPRMLQGSEMIGQGNLL 79

Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDAD 143
           GPED+ YDA+S LIYTGC DGW+KRVTLN+S A+S+VHNW  TGGRPLG+A   +     
Sbjct: 80  GPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNWAFTGGRPLGVALGRAG---- 135

Query: 144 RITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLR 202
              ++VADA KGLL+ISG+  + LLTDEAEG KFK T+ VDVA DGMIYFTDAS KY L 
Sbjct: 136 --EVLVADAEKGLLEISGDGVMKLLTDEAEGLKFKQTNAVDVAVDGMIYFTDASYKYGLI 193

Query: 203 EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKF 262
           E+I +I EG+P+GRLLSFDP T+ET VL+ DLY ANGVV+SPDQT +V+CET M+RC K+
Sbjct: 194 EFIWEILEGRPHGRLLSFDPSTQETIVLLRDLYLANGVVVSPDQTSVVFCETLMKRCIKY 253

Query: 263 YIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMV 322
           YI+G+  G +EKFI+ L G+PDNI YDGEGHY IALAT     WDLA +YP IRKV  ++
Sbjct: 254 YIQGERKGSMEKFIDNLSGMPDNILYDGEGHYWIALATGTKGLWDLALKYPSIRKVMAIL 313

Query: 323 VRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHL 382
            RY+G P + K + G+  VDL+GKPIAHYYDPE+S++SS IK+G +LYCGS     I+ L
Sbjct: 314 ERYIGRPHIEK-NGGILAVDLEGKPIAHYYDPELSMVSSGIKVGKYLYCGSFVKPYIIRL 372

Query: 383 DVNQHPARAI 392
           D++QH A  I
Sbjct: 373 DLDQHAAHTI 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744900|emb|CBI38397.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/370 (60%), Positives = 277/370 (74%), Gaps = 10/370 (2%)

Query: 24  LVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLK 83
           L+ + LT  PV  A+ +Y+LDSFDPA +P HEF+  P+     N RMLQGSE +G G L 
Sbjct: 22  LLVLILT--PVAAAIFLYQLDSFDPASLPTHEFSQEPMPVPKLNPRMLQGSEMIGQGNLL 79

Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDAD 143
           GPED+ YDA+S LIYTGC DGW+KRVTLN+S A+S+VHNW  TGGRPLG+A   +     
Sbjct: 80  GPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNWAFTGGRPLGVALGRAG---- 135

Query: 144 RITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLR 202
              ++VADA KGLL+ISG+  + LLTDEAEG KFK T+ VDVA DGMIYFTDAS KY L 
Sbjct: 136 --EVLVADAEKGLLEISGDGVMKLLTDEAEGLKFKQTNAVDVAVDGMIYFTDASYKYGLI 193

Query: 203 EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKF 262
           E+I +I EG+P+GRLLSFDP T+ET VL+ DLY ANGVV+SPDQT +V+CET M+RC K+
Sbjct: 194 EFIWEILEGRPHGRLLSFDPSTQETIVLLRDLYLANGVVVSPDQTSVVFCETLMKRCIKY 253

Query: 263 YIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMV 322
           YI+G+  G +EKFI+ L G+PDNI YDGEGHY IALAT     WDLA +YP IRKV  ++
Sbjct: 254 YIQGERKGSMEKFIDNLSGMPDNILYDGEGHYWIALATGTKGLWDLALKYPSIRKVMAIL 313

Query: 323 VRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHL 382
            RY+G P + K + G+  VDL+GKPIAHYYDPE+S++SS IK+G +LYCGS     I+ L
Sbjct: 314 ERYIGRPHIEK-NGGILAVDLEGKPIAHYYDPELSMVSSGIKVGKYLYCGSFVKPYIIRL 372

Query: 383 DVNQHPARAI 392
           D++QH A  I
Sbjct: 373 DLDQHAAHTI 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744903|emb|CBI38400.3| unnamed protein product [Vitis vinifera]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/383 (57%), Positives = 281/383 (73%), Gaps = 10/383 (2%)

Query: 12  DTSSSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERML 71
           +T+  SSS  L L+   LT  PV  A+ +Y+LDSFDPA +P H F+  P++    N R+L
Sbjct: 44  NTTRKSSSWSLALLISILT--PVAAAIFLYQLDSFDPASLPTHVFSQEPMSVPRINSRLL 101

Query: 72  QGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL 131
             SE +G G L GPED+ YD +S LIYTGC DGWIK+VTLNDS  +S+VH+W  TGGRPL
Sbjct: 102 HESEMIGLGKLLGPEDIAYDTNSHLIYTGCADGWIKKVTLNDSAVNSVVHDWAFTGGRPL 161

Query: 132 GIAFANSDPDADRITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMI 190
           G+    +        ++VADA KGLL+IS +  V LLTDEAEG  FKLTD VDVA DGMI
Sbjct: 162 GVVLGRAG------EVLVADADKGLLEISEDGVVKLLTDEAEGIGFKLTDAVDVAVDGMI 215

Query: 191 YFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLV 250
           YFTDAS KY L+++I DI EG+P+GRLLSFDP T+ETKVLV DLYFANGVV+SPDQT L+
Sbjct: 216 YFTDASYKYSLKDFIWDILEGRPHGRLLSFDPSTQETKVLVRDLYFANGVVVSPDQTFLI 275

Query: 251 YCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAY 310
           +CET M+RC K+YI+G+  G V+KFI+ LPG+PDNI YDGEGHY I LAT ++  WDLA 
Sbjct: 276 FCETFMKRCSKYYIQGERKGSVDKFIDNLPGMPDNILYDGEGHYWIGLATGYNDLWDLAL 335

Query: 311 RYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLY 370
           +YP IRK+  ++ R++G P   K + GV  +DL+GKPIAHYYDP++SL+SS IKI  +LY
Sbjct: 336 KYPSIRKIMAIMERFIGRPEFEK-NGGVLAIDLEGKPIAHYYDPKLSLMSSGIKIDKYLY 394

Query: 371 CGSVHHRGILHLDVNQHPARAII 393
           CG V    ++ LD++QH AR  +
Sbjct: 395 CGFVVKPYMIRLDLDQHAARTTL 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468656|ref|XP_002268467.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/383 (57%), Positives = 281/383 (73%), Gaps = 10/383 (2%)

Query: 12  DTSSSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERML 71
           +T+  SSS  L L+   LT  PV  A+ +Y+LDSFDPA +P H F+  P++    N R+L
Sbjct: 10  NTTRKSSSWSLALLISILT--PVAAAIFLYQLDSFDPASLPTHVFSQEPMSVPRINSRLL 67

Query: 72  QGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL 131
             SE +G G L GPED+ YD +S LIYTGC DGWIK+VTLNDS  +S+VH+W  TGGRPL
Sbjct: 68  HESEMIGLGKLLGPEDIAYDTNSHLIYTGCADGWIKKVTLNDSAVNSVVHDWAFTGGRPL 127

Query: 132 GIAFANSDPDADRITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMI 190
           G+    +        ++VADA KGLL+IS +  V LLTDEAEG  FKLTD VDVA DGMI
Sbjct: 128 GVVLGRAG------EVLVADADKGLLEISEDGVVKLLTDEAEGIGFKLTDAVDVAVDGMI 181

Query: 191 YFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLV 250
           YFTDAS KY L+++I DI EG+P+GRLLSFDP T+ETKVLV DLYFANGVV+SPDQT L+
Sbjct: 182 YFTDASYKYSLKDFIWDILEGRPHGRLLSFDPSTQETKVLVRDLYFANGVVVSPDQTFLI 241

Query: 251 YCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAY 310
           +CET M+RC K+YI+G+  G V+KFI+ LPG+PDNI YDGEGHY I LAT ++  WDLA 
Sbjct: 242 FCETFMKRCSKYYIQGERKGSVDKFIDNLPGMPDNILYDGEGHYWIGLATGYNDLWDLAL 301

Query: 311 RYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLY 370
           +YP IRK+  ++ R++G P   K + GV  +DL+GKPIAHYYDP++SL+SS IKI  +LY
Sbjct: 302 KYPSIRKIMAIMERFIGRPEFEK-NGGVLAIDLEGKPIAHYYDPKLSLMSSGIKIDKYLY 360

Query: 371 CGSVHHRGILHLDVNQHPARAII 393
           CG V    ++ LD++QH AR  +
Sbjct: 361 CGFVVKPYMIRLDLDQHAARTTL 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838242|emb|CAN69510.1| hypothetical protein VITISV_018383 [Vitis vinifera]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/370 (59%), Positives = 276/370 (74%), Gaps = 10/370 (2%)

Query: 24  LVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLK 83
           L+ + LT  PV  A+ +Y+LDSFDPA +P HEF+  P+     N RMLQGSE +G G L 
Sbjct: 22  LLVLILT--PVAAAIFLYQLDSFDPASLPTHEFSQEPMPVPKLNPRMLQGSEMIGQGNLL 79

Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDAD 143
           GPED+ YDA+S LIYTGC DGW+KRVTLN+S A+S+VHNW  TGGRPLG+A   +     
Sbjct: 80  GPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNWAFTGGRPLGVALGRAG---- 135

Query: 144 RITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLR 202
              ++VADA KGLL+ISG+  + LLTDEAEG KFK T+ VDVA DGMIYFTDAS KY L 
Sbjct: 136 --EVLVADAEKGLLEISGDGVMKLLTDEAEGLKFKQTNAVDVAVDGMIYFTDASYKYGLI 193

Query: 203 EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKF 262
           E+I +I EG+P+GRLLSFDP T+ET VL+ DLY ANGVV+SPDQT +V+CET M+RC K+
Sbjct: 194 EFIWEILEGRPHGRLLSFDPSTQETIVLLRDLYLANGVVVSPDQTSVVFCETLMKRCIKY 253

Query: 263 YIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMV 322
           YI+G+  G +EKFI+ L G+PDNI YDGEGHY IALAT     WDLA +YP IRKV  ++
Sbjct: 254 YIQGERKGSMEKFIDNLSGMPDNILYDGEGHYWIALATGTKGLWDLALKYPSIRKVMAIL 313

Query: 323 VRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHL 382
            RY+G P + K + G+  VDL+GKPIAHYYD E+S++SS IK+G +LYCGS     I+ L
Sbjct: 314 ERYIGRPHIEK-NGGILAVDLEGKPIAHYYDHELSMVSSGIKVGKYLYCGSFVKPYIIRL 372

Query: 383 DVNQHPARAI 392
           D++QH A  I
Sbjct: 373 DLDQHAACTI 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081469|ref|XP_002306422.1| predicted protein [Populus trichocarpa] gi|222855871|gb|EEE93418.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/367 (59%), Positives = 275/367 (74%), Gaps = 13/367 (3%)

Query: 26  TVFLT-GGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKG 84
           TV LT   PV +A LV++LDSF+PAP+P+HE T PPL A  +N+ MLQGSE VG+  L G
Sbjct: 2   TVLLTILSPVLVATLVFQLDSFEPAPLPIHELTQPPLKALKKNDHMLQGSELVGFKQLIG 61

Query: 85  PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADR 144
           PED+ YD+ S +IYT C DGW+KRVT+NDS AD++V +W+NTGGRPLG+A  + +     
Sbjct: 62  PEDIAYDSSSGVIYTSCADGWVKRVTINDSVADTIVESWVNTGGRPLGLALGHDN----- 116

Query: 145 ITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE 203
             +IVADA+KGLLKISG   V LL DEAEG K KLTD VD+A+DG IYFTDAS KY L E
Sbjct: 117 -EVIVADAFKGLLKISGEGKVELLADEAEGVKLKLTDAVDIAEDGTIYFTDASYKYNLLE 175

Query: 204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFY 263
           +  D  EGKP GR +S+DPVTKETKVL  DLYFANGV +SPDQ ++V+CET +    K+Y
Sbjct: 176 FFWDFLEGKPYGRAISYDPVTKETKVLAHDLYFANGVAVSPDQQYVVFCETFI----KYY 231

Query: 264 IKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVV 323
           I+GK  G +E FI+ LPGLPDNI +DG GHY IALA+  +   DLA ++PF+RK+ G+  
Sbjct: 232 IQGKKKGSLETFIDNLPGLPDNIHHDGHGHYYIALASGITVALDLALKHPFLRKLMGIYT 291

Query: 324 RYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLD 383
           +Y+G   + K +SGVFIVDL+GKP  HYYDP ++LISS I+IG+H+YCGSV    I+ LD
Sbjct: 292 KYIGEINVVK-NSGVFIVDLEGKPTEHYYDPGLALISSGIRIGNHIYCGSVVSPYIVRLD 350

Query: 384 VNQHPAR 390
           V +HPAR
Sbjct: 351 VTKHPAR 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476892|ref|XP_002268316.2| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/383 (55%), Positives = 282/383 (73%), Gaps = 10/383 (2%)

Query: 12  DTSSSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERML 71
           +T+  SSS  L L+   LT  PV  A+ +Y+ DSFDPA +P H F+  P++    N R+L
Sbjct: 10  NTTRKSSSWSLALLVSILT--PVAAAIFLYQFDSFDPASLPTHVFSQEPMSVPRINSRLL 67

Query: 72  QGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL 131
             SE +G G L GPED+ YD +S LIYTGC DGWIK+VTLNDS  +S+VH+W  TGGRPL
Sbjct: 68  HESEMIGLGKLLGPEDIAYDTNSHLIYTGCADGWIKKVTLNDSAVNSVVHDWAFTGGRPL 127

Query: 132 GIAFANSDPDADRITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMI 190
           G+    +        ++VADA KGLL+IS +  V LLT+EAEG +FKLTD VDVA DGMI
Sbjct: 128 GVVLGRAG------EVLVADADKGLLEISEDGVVKLLTNEAEGIRFKLTDAVDVAVDGMI 181

Query: 191 YFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLV 250
           YFTDAS KY  +++I D+ E +P+GRLLSFDP T+ETKVLV DLYFANGVV+SPDQT L+
Sbjct: 182 YFTDASYKYSFKDFIWDMLELRPHGRLLSFDPSTQETKVLVRDLYFANGVVVSPDQTFLI 241

Query: 251 YCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAY 310
           +CE+ M+RC K+Y++G+  G ++KFI+ LPG+PDNI YDGEGHY I LAT ++  WDLA+
Sbjct: 242 FCESFMKRCSKYYLQGERKGSMDKFIDNLPGMPDNILYDGEGHYWIGLATGYNDLWDLAF 301

Query: 311 RYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLY 370
           +YP IRKV  ++ +++GMP + K + GV  +DL+GKPIAHYYDP++SL+SS IKI  +LY
Sbjct: 302 KYPSIRKVMAIMEKFIGMPEIEK-NGGVLAIDLEGKPIAHYYDPKLSLVSSGIKIDKYLY 360

Query: 371 CGSVHHRGILHLDVNQHPARAII 393
           CG +    ++ LD++QH AR  +
Sbjct: 361 CGFIVKPYMIRLDLDQHAARTTL 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744909|emb|CBI38406.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/394 (56%), Positives = 281/394 (71%), Gaps = 16/394 (4%)

Query: 1   MPNSMPESVSADTSSSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPP 60
           M +S P   S D  SSS    L L+T+ L   PV  AML+Y+LD +DPAP+P+HEF+  P
Sbjct: 79  MADSTPSQSSMDRRSSSWP--LGLLTLIL--APVAAAMLLYQLDPYDPAPVPIHEFSQQP 134

Query: 61  LTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV 120
           +     N RMLQGSE +G G L  PED+ Y   S LIYTGC+DGW+KR+TLNDS    +V
Sbjct: 135 MVVPKLNPRMLQGSEMIGVGKLLSPEDIAYHPDSHLIYTGCDDGWVKRITLNDS----MV 190

Query: 121 HNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLT 179
            NW  TGGRPLG+A            ++VADA KGLL+++ +  V  LTDEAEG KFKLT
Sbjct: 191 QNWAFTGGRPLGVALGRHG------QLVVADAEKGLLEVTADGMVKTLTDEAEGLKFKLT 244

Query: 180 DGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG 239
           DGVDVA DGMIYFTDAS KY L+E+I DI EG+P+GRL+SFDP TKETKVLV DL+FANG
Sbjct: 245 DGVDVAVDGMIYFTDASYKYGLKEHIRDILEGRPHGRLMSFDPSTKETKVLVRDLFFANG 304

Query: 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299
           VV+SPDQ  ++ CE+ MRRC K++I+G+  G V+KFI+ LPG PDNI YDGEGHY IAL 
Sbjct: 305 VVVSPDQNSVIVCESVMRRCLKYHIQGERKGSVDKFIDNLPGPPDNILYDGEGHYWIALP 364

Query: 300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLI 359
              S  WDLA +YP+IRKV  ++ RY   P + K + GV  VDL+GKP A+YYDP +S +
Sbjct: 365 MGNSLAWDLALKYPWIRKVVAIMERYKVRPHIEK-NGGVLAVDLEGKPTAYYYDPSLSEV 423

Query: 360 SSAIKIGDHLYCGSVHHRGILHLDVNQHPARAII 393
           +S +KIG++LYCGS+    ++ LD++QH ARA +
Sbjct: 424 TSGVKIGNYLYCGSITKPYMIRLDLHQHAARATM 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147808646|emb|CAN68853.1| hypothetical protein VITISV_037416 [Vitis vinifera]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/370 (58%), Positives = 271/370 (73%), Gaps = 10/370 (2%)

Query: 24  LVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLK 83
           L+ + LT  PV  A+ +Y+LDSFDPA +P HEF+  P+     N  MLQGSE +G G L 
Sbjct: 22  LLVLILT--PVAAAIFLYQLDSFDPASLPTHEFSQEPMPVPKLNPCMLQGSEMIGQGNLL 79

Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDAD 143
           GPED+ YDA+S LIYTGC DGW+KRVTLN+S A+S+VHNW  TGGRPLG+A   +     
Sbjct: 80  GPEDIAYDANSHLIYTGCADGWVKRVTLNESAANSVVHNWAFTGGRPLGVALGRAG---- 135

Query: 144 RITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLR 202
              ++VADA KGLL+ISG+  + LLTDEAEG KFK T+ VDVA DGMIYFTDAS KY L 
Sbjct: 136 --KVLVADAEKGLLEISGDGVMKLLTDEAEGLKFKQTNAVDVAVDGMIYFTDASYKYGLI 193

Query: 203 EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKF 262
           E+I +I EG+P+ RLLSFDP T+ET VL+ DLY ANGVV+SPDQT +V CET M+RC K+
Sbjct: 194 EFIWEILEGRPHDRLLSFDPSTEETIVLLRDLYLANGVVVSPDQTSVVLCETLMKRCTKY 253

Query: 263 YIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMV 322
           YI+GK  G  EKFI+ L G+PDNI YD +GHY IALAT     WDLA +YP IRKV  ++
Sbjct: 254 YIQGKRKGSXEKFIDNLFGMPDNILYDEKGHYWIALATGTKGLWDLALKYPSIRKVVAIL 313

Query: 323 VRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHL 382
            RY+G P   K + G+  VDL+GK +AHY+DPE+S++SS +K+G +LYCGS     I+ L
Sbjct: 314 ERYIGRPHXEK-NGGILAVDLEGKLVAHYHDPELSMVSSGVKVGKYLYCGSFVKSYIIXL 372

Query: 383 DVNQHPARAI 392
           D++QH AR I
Sbjct: 373 DLDQHAARTI 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744905|emb|CBI38402.3| unnamed protein product [Vitis vinifera]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/394 (55%), Positives = 280/394 (71%), Gaps = 16/394 (4%)

Query: 1   MPNSMPESVSADTSSSSSSSRLWLVTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPP 60
           M +S P   S   +  SSS  L L+T+ L   PV  AML+Y+LD +DPAP+P+HEF+  P
Sbjct: 161 MADSTPSQSS--MARRSSSWPLGLLTLIL--APVAAAMLLYQLDPYDPAPVPIHEFSQQP 216

Query: 61  LTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV 120
           +     N RMLQGSE +G G L  PED+ Y   S LIYTGC+DGW+KR+TLNDS    +V
Sbjct: 217 MVVPKLNPRMLQGSEMIGVGKLLSPEDIAYHPDSHLIYTGCDDGWVKRITLNDS----MV 272

Query: 121 HNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTV-LLTDEAEGQKFKLT 179
            NW  TGGRPLG+A            ++VADA KGLL+++ +  V  LTDEAEG KFKLT
Sbjct: 273 QNWAFTGGRPLGVALGRHG------QLVVADAEKGLLEVTADGMVKTLTDEAEGLKFKLT 326

Query: 180 DGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG 239
           DGVDVA DGMIYFTDAS KY L+E+I DI EG+P+GRL+SFDP TKETKVLV DL+FANG
Sbjct: 327 DGVDVAVDGMIYFTDASYKYGLKEHIQDILEGRPHGRLMSFDPSTKETKVLVRDLFFANG 386

Query: 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299
           VV+SPDQ  ++ CE+ MRRC K++I+G+  G V+KFI+ LPG PDNI YDGE HY IAL 
Sbjct: 387 VVVSPDQNSVIVCESVMRRCLKYHIQGERKGSVDKFIDNLPGPPDNILYDGEEHYWIALP 446

Query: 300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLI 359
              S  WDLA +YP+IRKV  ++ RY   P + K + GV  VDL+GKP A+YYDP +S +
Sbjct: 447 MGNSLAWDLALKYPWIRKVVAIMERYKVRPHIEK-NGGVLAVDLEGKPTAYYYDPSLSEV 505

Query: 360 SSAIKIGDHLYCGSVHHRGILHLDVNQHPARAII 393
           +S +KIG++LYCGS+    ++ LD++QH ARA +
Sbjct: 506 TSGVKIGNYLYCGSITKPYMIRLDLHQHAARATM 539

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.898	0.951	0.540	7.7e-103
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.885	0.938	0.545	6.9e-102
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.885	0.938	0.545	3e-101
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.885	0.940	0.534	6.4e-99
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.826	0.783	0.330	5.5e-38
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.895	0.854	0.328	1.9e-37
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.837	0.792	0.332	1e-36
UNIPROTKB|G1K318	414	C3H20orf3 "Uncharacterized pro	0.824	0.782	0.327	1.7e-36
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.618	0.615	0.370	5.7e-36
ZFIN|ZDB-GENE-020919-1	415	apmap "adipocyte plasma membra	0.852	0.807	0.314	5.7e-36

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 198/366 (54%), Positives = 266/366 (72%)

Query:    28 FLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAA-LRNERMLQGSEKVGYGVLKGPE 86
             F T  P+ +++ +Y+LD+FDPAP+P   +     +   L +++ L G+E +G G+L  PE
Sbjct:    12 FFTIVPLLVSIALYQLDTFDPAPVPSEAYASSTTSIPPLISDKYLTGAEFIGVGLLDKPE 71

Query:    87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT 146
             D+ Y   S LIYTGC DGW+KRV+++DS  DS+V +W+NTGGRPLGIAF           
Sbjct:    72 DIAYHQDSNLIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPLGIAFGVHGE------ 125

Query:   147 MIVADAYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREY 204
             +IVADAYKGLL ISG+   T LLTD+AEG KFKLTD V VAD+G++YFTDAS KY L + 
Sbjct:   126 VIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYKYTLHQV 185

Query:   205 ILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI 264
               DI EGKP+GRL+SFDP T+ T+VL+ DLYFANGV +SPDQTHL++CET MRRC K+YI
Sbjct:   186 KFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMRRCSKYYI 245

Query:   265 KGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVR 324
                N  RVE FI+ LPG PDNIRYDG+GHY IA+ +  ST W L+ +YPF+RK++ +  +
Sbjct:   246 ---NEERVEVFIQGLPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKITAIAAK 302

Query:   325 YLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDV 384
             Y G+  M   ++GV  VDLDG PIA+Y+D  +S I++ IKIG++LYCG++ H  I+ LD+
Sbjct:   303 Y-GVELMFMKNAGVLQVDLDGNPIAYYHDQRLSHITTGIKIGNYLYCGNILHSYIIRLDL 361

Query:   385 NQHPAR 390
              ++PA+
Sbjct:   362 LKYPAQ 367

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 197/361 (54%), Positives = 261/361 (72%)

Query:    33 PVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAA-LRNERMLQGSEKVGYGVLKGPEDLLYD 91
             P+ +++ +YKLD+FDPA +P   FT    +   L N+  L G+E +G G+L  PED+ Y 
Sbjct:    17 PLLISIALYKLDTFDPAIVPSDAFTSSATSLPPLINDEFLTGAEFIGVGLLNIPEDIAYH 76

Query:    92 AHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD 151
               S LIYTGC DGW+KRV + DS  DS+V +W+NTGGRPLGIAF           +IVAD
Sbjct:    77 KESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPLGIAFGIHGE------VIVAD 130

Query:   152 AYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIF 209
              +KGLL ISG+   T LLTDEA+G KFKLTD V VAD+G++YFTDAS KY L +  LD+ 
Sbjct:   131 VHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYKYTLNQLSLDML 190

Query:   210 EGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA 269
             EGKP GRLLSFDP T+ TKVL+ DLYFANG+ +SPDQTHL++CET M+RC K+YI  +  
Sbjct:   191 EGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCETPMKRCSKYYISEE-- 248

Query:   270 GRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMP 329
              RVE F ++LPG PDNIRYDG+GHY IAL +  +T W+++ +YPF+RK++ MV +Y G+ 
Sbjct:   249 -RVEVFTQSLPGYPDNIRYDGDGHYWIALPSGVTTLWNISLKYPFLRKLTAMVAKY-GVD 306

Query:   330 PMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA 389
              M   ++GV  VDLDG PIA+Y+DP++S I++  KIG +LYCGS+    IL LD+ ++PA
Sbjct:   307 LMFMENAGVLQVDLDGNPIAYYHDPKLSHIATCDKIGKYLYCGSLSQSHILRLDLLKYPA 366

Query:   390 R 390
             +
Sbjct:   367 Q 367

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 197/361 (54%), Positives = 257/361 (71%)

Query:    33 PVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAA-LRNERMLQGSEKVGYGVLKGPEDLLYD 91
             P+ +++ +Y+LD+FDPA  P         +   L NER L G+E +G G+L  PED+ Y 
Sbjct:    17 PLLISITLYQLDTFDPAHHPADSLISSTASIPPLINERFLTGAEFIGVGLLNSPEDIAYH 76

Query:    92 AHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD 151
               S  IYTGC DGW+KRV + +S  DSLV + +NTGGRPLGIAF           +IVAD
Sbjct:    77 EDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFGIHGE------VIVAD 130

Query:   152 AYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIF 209
             AYKGLL ISG+   T LLT+EA+G +FKL D V VAD+G++YFTD S KY L ++  DI 
Sbjct:   131 AYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYKYNLHQFSFDIL 190

Query:   210 EGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA 269
             EGKP+GRL+SFDP TK T+VL+ DLYFANGV LSPDQTHLV+CET +RRC K+YI G   
Sbjct:   191 EGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCETPIRRCSKYYING--- 247

Query:   270 GRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMP 329
             GRVE FI+ LPG PDNIRYDG+GHY IA+ +  +T W L+ +YPF+RK++ M  +Y G  
Sbjct:   248 GRVELFIQGLPGYPDNIRYDGDGHYWIAMPSGVTTLWKLSMKYPFLRKITAMAAKY-GYE 306

Query:   330 PMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA 389
             PM   ++GV  VDLDG PIA+Y+D  +S I++ +KIG++LYCGS+ H  IL LD+ ++PA
Sbjct:   307 PMFMENAGVLQVDLDGNPIAYYHDQALSHITTGVKIGNYLYCGSLWHSHILRLDLLKYPA 366

Query:   390 R 390
             +
Sbjct:   367 Q 367

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 193/361 (53%), Positives = 254/361 (70%)

Query:    33 PVFLAMLVYKLDSFDPAPIPVHEF-THPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYD 91
             P  +++ +Y+LDSF+PA +P     T P     L N+R L G+E +G G+L  PED+ Y 
Sbjct:    17 PCLISITLYQLDSFEPASLPADSLITSPTSIPPLLNDRFLTGAEFIGVGLLNNPEDIAYH 76

Query:    92 AHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD 151
               S LIYTGC DGW+KRV+++DS  DS+V +W+NTGGRPLGIAF           +IVAD
Sbjct:    77 KDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPLGIAFGLHGE------VIVAD 130

Query:   152 AYKGLLKIS--GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIF 209
             A KGLL IS  G  T LLTDEA+G +FKLTD V VAD+G++YFTDAS+KY   ++I D  
Sbjct:   131 ANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSKYDFYQFIFDFL 190

Query:   210 EGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA 269
             EGKP+GR++SFDP T+ T+VL+ DLYFANG+ +SPDQTH V+CET MRRC K+YI  +  
Sbjct:   191 EGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMRRCSKYYISEE-- 248

Query:   270 GRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMP 329
              RVE FI+ LPG PDNIRYDG+GHY IAL +E +T W L+ +Y F+RK+  M  +Y G+ 
Sbjct:   249 -RVEVFIQGLPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYLFLRKLIYMAAKY-GVE 306

Query:   330 PMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA 389
              +   ++ V  VDLDG PIA Y+D   S I+S +KIG+HLY GS+ H  I  LD+ ++PA
Sbjct:   307 LLSIKNAAVLQVDLDGNPIAMYHDHPFSHITSGVKIGNHLYFGSLLHSYITRLDLLKYPA 366

Query:   390 R 390
             +
Sbjct:   367 Q 367

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 121/366 (33%), Positives = 186/366 (50%)

Query:    47 DPAPIPVHEFTHPPL-TAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGW 105
             DP PI + E   PPL T  L     LQ +E++    L GPE ++      +++TG  DG 
Sbjct:    65 DPQPISLKE---PPLLTGVLEPNNKLQKAERLWENQLVGPESIVNIGD--VLFTGTADGK 119

Query:   106 IKRVTLNDSPADSLV-HNWINTG------GRPLGIAFANSDPDADRITMIVADAYKGLLK 158
             I ++   +    + + H    T       GRPLGI    ++      T+ VADAY GL +
Sbjct:   120 ILKIEDGEVQTVARIGHGPCGTPEDEPTCGRPLGIRVGPNN------TLFVADAYYGLYE 173

Query:   159 IS---GNSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGK 212
             ++   G + +L++ +   EGQK    + + V  DG  IYFTD+S+K+  R+++  + EG 
Sbjct:   174 VNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGT 233

Query:   213 PNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRV 272
              +GRLL +D VTKE KVL+  L F NGV LSP +  ++  ET+M R R++Y+ G   G  
Sbjct:   234 DDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGA 293

Query:   273 EKFIETLPGLPDNIRYDGEGHYLIALATE-----FSTYWDLAYRYPFIRKVSGMVVRYLG 327
             + F+E +PGLPDNIR    G Y +A+        FS   D     P+I++   M+ + L 
Sbjct:   294 DMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSML-DFLSEKPWIKR---MIFKLLS 349

Query:   328 MPPMGKS-SSGVFIVDLD--GKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILH 381
                + K       +V+L   G     ++DP    +  +S A +   +LY GS     I  
Sbjct:   350 QETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICR 409

Query:   382 LDVNQH 387
             L++ QH
Sbjct:   410 LNL-QH 414

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 131/399 (32%), Positives = 197/399 (49%)

Query:     3 NSMPESVSADTXXXXXXXRLWLV-TVFLTGGPVFLAMLVYKLDS-FDPAPIPVHEFTHPP 60
             N  PE+    +         +L+   FLT  P+  A+++  LDS  DP P+    F  PP
Sbjct:    22 NRTPEAKGGSSFSGRVFRATFLMLAAFLTI-PLLGALVL--LDSPIDPEPL---SFKEPP 75

Query:    61 L-TAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSL 119
             L    L+    LQ +E++    L GPE +       +++TG  DG +  V L +   +++
Sbjct:    76 LFLGVLQPNTKLQQAERLFENQLVGPESIANIGD--VMFTGTADGRV--VKLENGEVETI 131

Query:   120 VHNWINTG-----------GRPLGIAFANSDPDADRITMIVADAYKGLLKISG---NSTV 165
                   +G           GRPLGI    + P+    T+ V DAYKGL +++       +
Sbjct:   132 AR--FGSGPCKTRDDEPACGRPLGI---RAGPNG---TLFVVDAYKGLFEVNPWKREVKL 183

Query:   166 LLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDP 222
             LL+ E   EG+K    + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D 
Sbjct:   184 LLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDT 243

Query:   223 VTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGL 282
              TKE KVL+  L F NGV LSP +  ++  E +M R R+FY+ G   G  + F+E LPG 
Sbjct:   244 QTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGF 303

Query:   283 PDNIRYDGEGHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSG 337
             PDNIR    G Y +++A       FS    L+ R PF++KV   +     +       S 
Sbjct:   304 PDNIRASSSGGYWVSMAAIRANPGFSMLDFLSER-PFLKKVIFKLFSQETVMKFVPRYSL 362

Query:   338 VFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGS 373
             V  +   G  +   +DPE   ++ +S A +   HLY GS
Sbjct:   363 VLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGS 401

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 126/379 (33%), Positives = 189/379 (49%)

Query:    24 LVTVFLTGGPVFLAMLVYKLDS-FDPAPIPVHEFTHPPLT-AALRNERMLQGSEKVGYGV 81
             ++ V LT  P+  AML+  LDS  DP P+    F  PPL    L+    LQ +E++    
Sbjct:    44 MLAVSLTV-PLLGAMLL--LDSPIDPQPL---SFKEPPLLLGVLQPNTKLQQAERLFENQ 97

Query:    82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG-----------GRP 130
             L GPE +       +++TG  DG  + V L +   +++      +G           GR 
Sbjct:    98 LIGPESIANIGD--VMFTGTADG--RLVKLENGEVETIAR--FGSGPCKTRDDEPACGRL 151

Query:   131 LGIAFANSDPDADRITMIVADAYKGLLKISG---NSTVLLTDEA--EGQKFKLTDGVDVA 185
             LGI    + P+    T+ VADAYKGL +++       +L++ E   EG+K    + + + 
Sbjct:   152 LGI---RAGPNG---TLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTIT 205

Query:   186 DDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244
              DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D  TKE KVL+  L F NGV LSP
Sbjct:   206 QDGKKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSP 265

Query:   245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS- 303
             ++  ++  ET+M R R+FY+ G   G  + F+E LPG PDNIR    G Y + +AT  S 
Sbjct:   266 EEDFVLVAETTMARIRRFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSN 325

Query:   304 ---TYWDLAYRYPFIRKVSGMVVRYLGMPPMGK---SSSGVFIVDLDGKPIAHYYDPE-- 355
                +  D     P+I++   M+ +      + K     S V  +   G      +DP   
Sbjct:   326 PGFSMLDFLSERPYIKR---MIFKLFSQETVMKFVPRYSLVLELSNSGAFRRSLHDPTGQ 382

Query:   356 -MSLISSAIKIGDHLYCGS 373
               S +S   +   HLY GS
Sbjct:   383 VASYVSEVHEYNGHLYLGS 401

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|G1K318 C3H20orf3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 120/366 (32%), Positives = 185/366 (50%)

Query:    47 DPAPIPVHEFTHPPL-TAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGW 105
             DP PI + E   PPL T  L     LQ +E++    L GPE ++      +++TG  DG 
Sbjct:    65 DPQPISLKE---PPLLTGVLEPNNKLQKAERLWENQLVGPESIVNIGD--VLFTGTADGK 119

Query:   106 IKRVTLNDSPADSLV-HNWINTG------GRPLGIAFANSDPDADRITMIVADAYKGLLK 158
             I ++   +    + + H    T       GRPLGI    ++      T+ VADAY GL +
Sbjct:   120 ILKIEDGEVQTVARIGHGPCGTPEDEPTCGRPLGIRVGPNN------TLFVADAYYGLYE 173

Query:   159 IS---GNSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGK 212
             ++   G + +L++ +   EGQK    + + V  DG  IYFTD+S+K+  R+++  + EG 
Sbjct:   174 VNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGT 233

Query:   213 PNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRV 272
              +G LL +D VTKE KVL+  L F NGV LSP +  ++  ET+M R R++Y+ G   G  
Sbjct:   234 DDG-LLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGA 292

Query:   273 EKFIETLPGLPDNIRYDGEGHYLIALATE-----FSTYWDLAYRYPFIRKVSGMVVRYLG 327
             + F+E +PGLPDNIR    G Y +A+        FS   D     P+I++   M+ + L 
Sbjct:   293 DMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSML-DFLSEKPWIKR---MIFKLLS 348

Query:   328 MPPMGKS-SSGVFIVDLD--GKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILH 381
                + K       +V+L   G     ++DP    +  +S A +   +LY GS     I  
Sbjct:   349 QETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICR 408

Query:   382 LDVNQH 387
             L++ QH
Sbjct:   409 LNL-QH 413

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 100/270 (37%), Positives = 148/270 (54%)

Query:    67 NERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDG---------WIK--RVTLNDS- 114
             ++  LQ S+ + +  ++GPE + +D+  +  YTG  DG         WI     + N S 
Sbjct:    58 SQNSLQKSKILFFNQIQGPESVAFDSLGRGPYTGVADGRVLFWDGEKWIDFAYTSSNRSE 117

Query:   115 ---PADSLVHNWINTG--GRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNSTVL 166
                P  S +    N    GRPLG+ F     D     + +ADAY GLLK+    G +T L
Sbjct:   118 ICDPKPSALSYLRNEHICGRPLGLRFDKRTGD-----LYIADAYMGLLKVGPEGGLATPL 172

Query:   167 LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE 226
             +T EAEG     T+ +D+ADDG +YFTD+S  Y  R ++  +F G   GR+L +DPV K+
Sbjct:   173 VT-EAEGVPLGFTNDLDIADDGTVYFTDSSISYQRRNFLQLVFSGDNTGRVLKYDPVAKK 231

Query:   227 TKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNI 286
               VLVS+L F NGV +S D +  V+CE  +   R++++KG+ AG  + F   LPG PDN+
Sbjct:   232 AVVLVSNLQFPNGVSISRDGSFFVFCEGDIGSLRRYWLKGEKAGTTDVFAY-LPGHPDNV 290

Query:   287 RYDGEGHYLIALATEFSTYWDLAYRYPFIR 316
             R + +G + +AL    + Y  L  RYP +R
Sbjct:   291 RTNQKGEFWVALHCRRNYYSYLMARYPKLR 320

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

ZFIN|ZDB-GENE-020919-1 apmap "adipocyte plasma membrane associated protein" [Danio rerio (taxid:7955)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 119/378 (31%), Positives = 191/378 (50%)

Query:    36 LAMLVYKLDSFDPAPIPVHEFTHPPL-TAALRNERMLQGSEKVGYGVLKGPEDLLYDAHS 94
             L ++V+ L+S  P    V     PPL T        L+ +E++    L GPE L      
Sbjct:    53 LLVVVFVLES--PIQPEVFSLNEPPLMTGCYEPNLKLRQAERLFEERLVGPESLANIGD- 109

Query:    95 KLIYTGCEDGWIKRV---------TLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRI 145
              + YTG  DG I ++         T+   P  S  H   +T GRPLGI      P+    
Sbjct:   110 -VFYTGTADGKIVKIEGRNIHVLATIGKPPCGSREHE--HTCGRPLGIRVG---PNG--- 160

Query:   146 TMIVADAYKGLLKIS---GNSTVLLTDEAE--GQKFKLTDGVDVADDGM-IYFTDASNKY 199
             T+ VADAY GL +++   G    L++ E    G++    + +DV  DG  +YFTD+S+++
Sbjct:   161 TLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRW 220

Query:   200 YLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC 259
               R+++  I E   +GR+L +D  TKE  V++ +L F NG+ L PD+  ++  ET+M R 
Sbjct:   221 QRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARI 280

Query:   260 RKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE-----FSTYWDLAYRYPF 314
             ++ ++ G N G ++ FIE LPG PDNIR    G Y +A++       FS    L+ R P+
Sbjct:   281 KRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQR-PW 339

Query:   315 IRKVSGMVVRYLGMPPMGKSSSGV-FIVDL--DGKPIAHYYDPE--MSLISS-AIKIGDH 368
             ++K   ++ +      + K       +V+L  DG  +  ++DP+  +S  SS A +   H
Sbjct:   340 LKK---LIFKLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGH 396

Query:   369 LYCGSVHHRGILHLDVNQ 386
             LY GS     +  LD+++
Sbjct:   397 LYLGSFRSPYLCKLDLSK 414

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D7N9	APMAP_MOUSE	No assigned EC number	0.3030	0.9083	0.8602	yes	no
Q5ZIF1	APMAP_CHICK	No assigned EC number	0.3111	0.9185	0.8698	yes	no
Q7TP48	APMAP_RAT	No assigned EC number	0.3113	0.8549	0.8936	yes	no
Q3T0E5	APMAP_BOVIN	No assigned EC number	0.3192	0.9007	0.8592	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	393
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	2e-34
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-16
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	5e-08

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  122 bits (307), Expect = 2e-34
 Identities = 43/88 (48%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 180 DGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN 238
           + +DV  + G++YFTD+S++Y  R+ I  + EG   GRL+ +DP TK TKVL+ DLYF N
Sbjct: 1   NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPN 60

Query: 239 GVVLSPDQTHLVYCETSMRRCRKFYIKG 266
           G+ LSPD + +++CET M+R  K++IKG
Sbjct: 61  GIALSPDGSFVLFCETPMKRISKYWIKG 88

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 56/248 (22%), Positives = 80/248 (32%), Gaps = 50/248 (20%)

Query: 114 SPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SGNSTVLLTDEAE 172
            P       + + GG   G        DA     I  +    LL   +G    LL +  +
Sbjct: 53  DPETGKKRVFPSPGGFSSGALI-----DAGGRL-IACEHGVRLLDPDTGGKITLLAEPED 106

Query: 173 GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232
           G      +   V  DG I+F D         + L   E +P G L   DP     ++L  
Sbjct: 107 GLPLNRPNDGVVDPDGRIWFGDMGY------FDLGKSEERPTGSLYRVDPDGGVVRLLDD 160

Query: 233 DLYFANGVVLSPDQTHLVYCETSMRRCRKF---YIKGKNAGRVEKFIETL-PGLPDNIRY 288
           DL   NG+  SPD   L   +T   R  ++      G   GR         PGLPD +  
Sbjct: 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV 220

Query: 289 DGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPI 348
           D +G+  +      +  W             G VVR+                + DGK +
Sbjct: 221 DADGNLWV------AAVWG-----------GGRVVRF----------------NPDGKLL 247

Query: 349 AHYYDPEM 356
                P  
Sbjct: 248 GEIKLPVK 255

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 42/159 (26%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 146 TMIVADAY-KGLLKISGNSTVLLTDEAEGQKFK-LTDGVDVADDGMIYFTDASNKYYLRE 203
            +IVA      LL +       L D    +      DG  V  DG  +F           
Sbjct: 53  RLIVALKRGLALLDLDTGELTTLADLEPDEPLNRFNDGK-VDPDGRFWFGTMGF------ 105

Query: 204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKF- 262
              DI  G   G L   DP  K  +VL   +  +NG+  SPD   L + ++  RR   F 
Sbjct: 106 ---DIAPGGEPGALYRLDPDGKVERVL-DGITISNGLAWSPDGKTLYFADSPTRRIWAFD 161

Query: 263 Y-IKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIAL 298
           Y   G        F +     G PD +  D EG+  +A 
Sbjct: 162 YDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWVAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.96
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.85
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.81
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.74
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.6
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
PRK11028	330	6-phosphogluconolactonase; Provisional	99.57
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.54
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.49
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.47
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.43
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.43
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.38
PRK11028	330	6-phosphogluconolactonase; Provisional	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.13
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	99.1
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.01
COG3391	381	Uncharacterized conserved protein [Function unknow	98.98
COG3391	381	Uncharacterized conserved protein [Function unknow	98.98
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.98
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.97
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.9
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.86
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.84
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.76
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.75
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.74
PRK05137	435	tolB translocation protein TolB; Provisional	98.73
PRK04792	448	tolB translocation protein TolB; Provisional	98.68
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.65
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.62
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.61
PRK04922	433	tolB translocation protein TolB; Provisional	98.61
PRK02889	427	tolB translocation protein TolB; Provisional	98.61
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.6
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.59
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.59
PRK03629	429	tolB translocation protein TolB; Provisional	98.58
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.56
PRK00178	430	tolB translocation protein TolB; Provisional	98.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.55
PRK04792	448	tolB translocation protein TolB; Provisional	98.54
PRK04922	433	tolB translocation protein TolB; Provisional	98.54
PRK05137	435	tolB translocation protein TolB; Provisional	98.54
PRK03629	429	tolB translocation protein TolB; Provisional	98.52
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.52
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.5
PRK02889	427	tolB translocation protein TolB; Provisional	98.46
PRK00178	430	tolB translocation protein TolB; Provisional	98.44
PRK04043	419	tolB translocation protein TolB; Provisional	98.43
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.4
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.38
PRK01742	429	tolB translocation protein TolB; Provisional	98.38
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.3
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.26
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.26
PRK01029	428	tolB translocation protein TolB; Provisional	98.26
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.24
PRK04043	419	tolB translocation protein TolB; Provisional	98.23
PRK02888	635	nitrous-oxide reductase; Validated	98.19
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.19
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.16
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.16
PRK01742	429	tolB translocation protein TolB; Provisional	98.15
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.11
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.11
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.11
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.09
KOG0266	456	consensus WD40 repeat-containing protein [General	98.08
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.06
KOG2055	514	consensus WD40 repeat protein [General function pr	98.06
PRK01029	428	tolB translocation protein TolB; Provisional	98.01
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.01
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	98.01
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.99
KOG0266	456	consensus WD40 repeat-containing protein [General	97.99
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.9
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.9
PTZ00421	493	coronin; Provisional	97.86
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.84
PLN00181	793	protein SPA1-RELATED; Provisional	97.83
KOG0289	506	consensus mRNA splicing factor [General function p	97.82
KOG0286	343	consensus G-protein beta subunit [General function	97.8
COG4946	668	Uncharacterized protein related to the periplasmic	97.79
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.75
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.7
KOG2055	514	consensus WD40 repeat protein [General function pr	97.69
KOG1539	910	consensus WD repeat protein [General function pred	97.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.68
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.67
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.66
PRK13684	334	Ycf48-like protein; Provisional	97.65
PTZ00420	568	coronin; Provisional	97.63
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	97.6
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.59
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.59
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.57
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.53
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.49
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.47
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.44
COG4946	668	Uncharacterized protein related to the periplasmic	97.44
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.44
KOG0639	705	consensus Transducin-like enhancer of split protei	97.42
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.41
KOG0289	506	consensus mRNA splicing factor [General function p	97.39
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.36
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.36
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.36
KOG0286	343	consensus G-protein beta subunit [General function	97.35
PTZ00421	493	coronin; Provisional	97.32
KOG0296	399	consensus Angio-associated migratory cell protein	97.31
KOG1407	313	consensus WD40 repeat protein [Function unknown]	97.31
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.29
KOG1273	405	consensus WD40 repeat protein [General function pr	97.26
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.26
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.24
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.23
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.21
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.21
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.2
KOG1274	933	consensus WD40 repeat protein [General function pr	97.19
KOG2048	691	consensus WD40 repeat protein [General function pr	97.18
PRK02888	635	nitrous-oxide reductase; Validated	97.18
PTZ00420	568	coronin; Provisional	97.16
KOG1274	933	consensus WD40 repeat protein [General function pr	97.12
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.11
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.11
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.11
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.07
PLN00181	793	protein SPA1-RELATED; Provisional	97.04
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.03
KOG0301	745	consensus Phospholipase A2-activating protein (con	97.01
KOG2096	420	consensus WD40 repeat protein [General function pr	96.97
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.94
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.9
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.89
KOG0284	464	consensus Polyadenylation factor I complex, subuni	96.87
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.86
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.86
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.84
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	96.78
COG3211	616	PhoX Predicted phosphatase [General function predi	96.77
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.74
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.74
KOG0278	334	consensus Serine/threonine kinase receptor-associa	96.72
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.72
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.71
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.67
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	96.66
KOG0646	476	consensus WD40 repeat protein [General function pr	96.54
KOG0646	476	consensus WD40 repeat protein [General function pr	96.51
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.49
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.49
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.46
KOG0296	399	consensus Angio-associated migratory cell protein	96.43
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	96.41
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.38
KOG0639	705	consensus Transducin-like enhancer of split protei	96.35
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.31
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	96.3
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.29
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.25
PRK13616	591	lipoprotein LpqB; Provisional	96.18
COG3211	616	PhoX Predicted phosphatase [General function predi	96.06
KOG0771	398	consensus Prolactin regulatory element-binding pro	95.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	95.97
KOG4328	498	consensus WD40 protein [Function unknown]	95.92
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	95.85
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	95.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.81
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	95.81
KOG1539	910	consensus WD repeat protein [General function pred	95.77
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	95.77
KOG2048	691	consensus WD40 repeat protein [General function pr	95.74
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.67
KOG0641	350	consensus WD40 repeat protein [General function pr	95.66
KOG2139	445	consensus WD40 repeat protein [General function pr	95.63
KOG0645	312	consensus WD40 repeat protein [General function pr	95.63
KOG0645	312	consensus WD40 repeat protein [General function pr	95.54
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.53
PRK13684	334	Ycf48-like protein; Provisional	95.43
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	95.28
KOG0973	942	consensus Histone transcription regulator HIRA, WD	95.26
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	95.23
KOG2321	703	consensus WD40 repeat protein [General function pr	95.23
KOG0303	472	consensus Actin-binding protein Coronin, contains	95.13
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.13
KOG0288	459	consensus WD40 repeat protein TipD [General functi	95.09
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.06
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.05
KOG0643	327	consensus Translation initiation factor 3, subunit	95.01
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.01
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	94.88
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.83
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	94.82
KOG0640	430	consensus mRNA cleavage stimulating factor complex	94.8
KOG2096	420	consensus WD40 repeat protein [General function pr	94.77
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	94.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	94.64
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	94.6
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	94.58
KOG0316	307	consensus Conserved WD40 repeat-containing protein	94.57
KOG0643	327	consensus Translation initiation factor 3, subunit	94.56
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.54
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.49
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.23
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.21
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.02
KOG2321	703	consensus WD40 repeat protein [General function pr	94.02
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.0
PHA02713	557	hypothetical protein; Provisional	93.77
KOG3881	412	consensus Uncharacterized conserved protein [Funct	93.66
KOG0288	459	consensus WD40 repeat protein TipD [General functi	93.57
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	93.51
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.5
KOG0294	362	consensus WD40 repeat-containing protein [Function	93.4
smart00284	255	OLF Olfactomedin-like domains.	93.18
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	92.89
KOG2110	391	consensus Uncharacterized conserved protein, conta	92.81
KOG1963	792	consensus WD40 repeat protein [General function pr	92.79
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.77
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.59
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	92.55
KOG3881	412	consensus Uncharacterized conserved protein [Funct	92.43
PF07494	24	Reg_prop: Two component regulator propeller; Inter	92.42
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	92.41
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	92.35
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	92.33
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	92.11
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.05
KOG0649	325	consensus WD40 repeat protein [General function pr	92.03
PRK13616	591	lipoprotein LpqB; Provisional	91.79
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	91.69
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.49
COG5276	370	Uncharacterized conserved protein [Function unknow	91.3
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	91.2
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	91.19
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.19
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.18
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.16
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	91.08
KOG0295	406	consensus WD40 repeat-containing protein [Function	90.87
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	90.64
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	90.49
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	90.42
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	90.33
KOG0308	735	consensus Conserved WD40 repeat-containing protein	90.12
KOG4227	609	consensus WD40 repeat protein [General function pr	90.09
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	90.0
KOG2139	445	consensus WD40 repeat protein [General function pr	89.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	89.41
PF07494	24	Reg_prop: Two component regulator propeller; Inter	89.35
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	89.26
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	89.17
KOG2315	566	consensus Predicted translation initiation factor	89.05
KOG0284	464	consensus Polyadenylation factor I complex, subuni	88.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	88.76
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	88.68
KOG0295	406	consensus WD40 repeat-containing protein [Function	88.32
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.31
KOG2395	644	consensus Protein involved in vacuole import and d	88.11
KOG0647	347	consensus mRNA export protein (contains WD40 repea	87.79
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	87.59
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	87.39
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	86.95
KOG4547	541	consensus WD40 repeat-containing protein [General	86.65
KOG0647	347	consensus mRNA export protein (contains WD40 repea	86.37
KOG0771	398	consensus Prolactin regulatory element-binding pro	86.17
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.64
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.02
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	84.97
KOG0270	463	consensus WD40 repeat-containing protein [Function	84.92
COG5167	776	VID27 Protein involved in vacuole import and degra	84.86
KOG1188	376	consensus WD40 repeat protein [General function pr	84.82
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	84.63
KOG3621	726	consensus WD40 repeat-containing protein [General	83.84
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	83.82
KOG1273	405	consensus WD40 repeat protein [General function pr	83.42
PHA03098	534	kelch-like protein; Provisional	83.1
COG5276	370	Uncharacterized conserved protein [Function unknow	82.2
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	82.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	81.83
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	81.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	81.64
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	81.53
KOG4328	498	consensus WD40 protein [Function unknown]	81.32
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	81.28
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	80.63
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	80.55
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	80.37
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	80.19
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	80.16

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=6.9e-53  Score=392.72  Aligned_cols=342  Identities=38%  Similarity=0.631  Sum_probs=285.6

Q ss_pred             eeeeeCCCCCCCCCCCC-CCCCCccccCcccccccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc
Q 016199           39 LVYKLDSFDPAPIPVHE-FTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD  117 (393)
Q Consensus        39 ~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~  117 (393)
                      +++.++...+...+... .+.++..+.+.+++.+..+|.+.-+.+..|+.+.++.+....|.|..+|+|-+.+.......
T Consensus        20 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~   99 (376)
T KOG1520|consen   20 LLYLLSGSSIAGSPDDRLFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNR   99 (376)
T ss_pred             hhhccCcccccCCchhcccCCCCcccccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccc
Confidence            34445555555554444 44556677777888788888888877776777767655445788888998888776321111


Q ss_pred             ce-----eeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcE
Q 016199          118 SL-----VHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMI  190 (393)
Q Consensus       118 ~~-----~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l  190 (393)
                      ..     .....+.|+||+||+|+.+|     .+|||||++.||+.++++|  .+.+.++.+|.++.+.|+++++++|.+
T Consensus       100 ~~~~~~~~~~~e~~CGRPLGl~f~~~g-----gdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~v  174 (376)
T KOG1520|consen  100 SQCCDPGSFETEPLCGRPLGIRFDKKG-----GDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVV  174 (376)
T ss_pred             cccCCCcceecccccCCcceEEeccCC-----CeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeE
Confidence            11     11223568999999999876     3899999999999999988  677778899999999999999999999


Q ss_pred             EEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCc
Q 016199          191 YFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAG  270 (393)
Q Consensus       191 ~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~  270 (393)
                      ||||+|+++++++++++++|+..+||+++||+.|+..+++++++.+|||+++|+|++++++||+...||.|||++|++.+
T Consensus       175 yFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~g  254 (376)
T KOG1520|consen  175 YFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAG  254 (376)
T ss_pred             EEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCC----CCceEEEECCCCc
Q 016199          271 RVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGK----SSSGVFIVDLDGK  346 (393)
Q Consensus       271 ~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~----~~~~v~~~d~~g~  346 (393)
                      +.|+|++++||+||||+.+++|++||++...|+.++++++++||+|+++.+++..+.......    ++..|.+.|.+|+
T Consensus       255 t~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~  334 (376)
T KOG1520|consen  255 TSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGK  334 (376)
T ss_pred             chhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCc
Confidence            999999899999999999999999999999999999999999999999999876653211111    2256777789999


Q ss_pred             EEEEeeCCC---CCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199          347 PIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       347 ~~~~~~d~~---~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                      ++++|||.+   ...++.+.|.+|+||+||+..++|+++|+.
T Consensus       335 il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl~  376 (376)
T KOG1520|consen  335 ILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKLP  376 (376)
T ss_pred             EEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence            999999987   455666677789999999999999999973

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.96  E-value=1.1e-26  Score=214.80  Aligned_cols=232  Identities=25%  Similarity=0.378  Sum_probs=172.9

Q ss_pred             CceEEEec-CCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC-CCCCCCCceEEEEEeCCCceEEEeC
Q 016199           85 PEDLLYDA-HSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA-NSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        85 Pe~ia~d~-~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d-~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ||++++++ +|. ||+.+ ..++|++++++++.    ...+..  ..|.|++++ ++|      +||+++. .++..+|+
T Consensus         2 ~Egp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~----~~~~~~--~~~~G~~~~~~~g------~l~v~~~-~~~~~~d~   67 (246)
T PF08450_consen    2 GEGPVWDPRDGR-LYWVDIPGGRIYRVDPDTGE----VEVIDL--PGPNGMAFDRPDG------RLYVADS-GGIAVVDP   67 (246)
T ss_dssp             EEEEEEETTTTE-EEEEETTTTEEEEEETTTTE----EEEEES--SSEEEEEEECTTS------EEEEEET-TCEEEEET
T ss_pred             CcceEEECCCCE-EEEEEcCCCEEEEEECCCCe----EEEEec--CCCceEEEEccCC------EEEEEEc-CceEEEec
Confidence            78999998 554 65555 58899999998875    444433  239999999 788      9999974 66777786


Q ss_pred             Cc--eEEEeeccCCc-cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199          162 NS--TVLLTDEAEGQ-KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN  238 (393)
Q Consensus       162 ~g--~~~l~~~~~g~-~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n  238 (393)
                      +.  .+.+.....+. ++..+|++++|++|++||++.......         ....|+|++++++ ++.+.+..++..||
T Consensus        68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pN  137 (246)
T PF08450_consen   68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPN  137 (246)
T ss_dssp             TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEE
T ss_pred             CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCccccc
Confidence            54  55555443333 677899999999999999986542210         0011789999998 88888888899999


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCC--Ccceeeeec--cCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcc
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKN--AGRVEKFIE--TLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPF  314 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~--~~~~~~~~~--~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~  314 (393)
                      ||++++|++.||++++..++|++|+++.+.  ....+.+.+  ...+.|||+++|++|++||+.+..             
T Consensus       138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-------------  204 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-------------  204 (246)
T ss_dssp             EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-------------
T ss_pred             ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-------------
Confidence            999999999999999999999999997432  333455543  223469999999999999998855             


Q ss_pred             hhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEec
Q 016199          315 IRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSV  374 (393)
Q Consensus       315 ~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~  374 (393)
                                           +.|.++|++|+++..+..+.  ...+++..++.++||+++.
T Consensus       205 ---------------------~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  205 ---------------------GRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             ---------------------TEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             ---------------------CEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence                                 67999999999999999874  2233332335689999974

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.4e-26  Score=214.66  Aligned_cols=253  Identities=23%  Similarity=0.341  Sum_probs=190.1

Q ss_pred             cccccCceEEecCccCCCceEEEecCCCEE-EEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE
Q 016199           68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLI-YTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT  146 (393)
Q Consensus        68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L-~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~  146 (393)
                      ...+.....++||+       +++++.+.| |+....++|+++++.++.    .+.+......+.++.++..|      +
T Consensus        17 ~~~~~~~~~~gEgP-------~w~~~~~~L~w~DI~~~~i~r~~~~~g~----~~~~~~p~~~~~~~~~d~~g------~   79 (307)
T COG3386          17 VTLLDKGATLGEGP-------VWDPDRGALLWVDILGGRIHRLDPETGK----KRVFPSPGGFSSGALIDAGG------R   79 (307)
T ss_pred             eeEeecccccccCc-------cCcCCCCEEEEEeCCCCeEEEecCCcCc----eEEEECCCCcccceeecCCC------e
Confidence            34445555555554       478877745 555568899999998765    67776666778899999999      8


Q ss_pred             EEEEeCCCceEEEeCC-c-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199          147 MIVADAYKGLLKISGN-S-T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV  223 (393)
Q Consensus       147 L~v~~~~~gl~~id~~-g-~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~  223 (393)
                      |+++.  .|+.+++.+ + . +.+.....+.+.+.+|++.++++|++||++++. ..     ....+....|.||++||.
T Consensus        80 Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~  151 (307)
T COG3386          80 LIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPD  151 (307)
T ss_pred             EEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCC
Confidence            88875  455555533 3 4 666666667777889999999999999999873 10     112333567889999996


Q ss_pred             CCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec---CCCCcc-eeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          224 TKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK---GKNAGR-VEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       224 t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~---g~~~~~-~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++..+.+..++..||||++||||+.+|++++..++|++|+++   +...++ ...+.+..+|.|||+++|++|++|++..
T Consensus       152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~  231 (307)
T COG3386         152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV  231 (307)
T ss_pred             CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc
Confidence            555554555599999999999999999999999999999987   333332 2344445689999999999999997544


Q ss_pred             cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecCCC
Q 016199          300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVHHR  377 (393)
Q Consensus       300 ~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~~~  377 (393)
                      .+.                                 ++|.+|+++|+.+..+..|.  ...+++..++.+.||+++....
T Consensus       232 ~~g---------------------------------~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~  278 (307)
T COG3386         232 WGG---------------------------------GRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSG  278 (307)
T ss_pred             cCC---------------------------------ceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCC
Confidence            220                                 37999999999999999884  6677787778899999998873


Q ss_pred             e
Q 016199          378 G  378 (393)
Q Consensus       378 ~  378 (393)
                      .
T Consensus       279 ~  279 (307)
T COG3386         279 M  279 (307)
T ss_pred             C
Confidence            3

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.85  E-value=4.3e-21  Score=146.15  Aligned_cols=88  Identities=48%  Similarity=0.933  Sum_probs=74.8

Q ss_pred             ccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCe
Q 016199          180 DGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRR  258 (393)
Q Consensus       180 ~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r  258 (393)
                      |+++++++ |.+||||+|.++...+|+++++|+.++|+|++|||.|++++++++++.+||||++++|+++++|+|+...|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            58999998 89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCC
Q 016199          259 CRKFYIKGK  267 (393)
Q Consensus       259 i~~~~~~g~  267 (393)
                      |.|||++|+
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999999874

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.81  E-value=6.5e-18  Score=150.76  Aligned_cols=238  Identities=15%  Similarity=0.135  Sum_probs=178.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      .+|.+++.++||.+.|.+...+.|-++|+.+++    ++.+.- .+.+|++|..++||      ..||+|...+|.|+++
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGe----v~~ypLg~Ga~Phgiv~gpdg------~~Witd~~~aI~R~dp  131 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGE----VETYPLGSGASPHGIVVGPDG------SAWITDTGLAIGRLDP  131 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCc----eEEEecCCCCCCceEEECCCC------CeeEecCcceeEEecC
Confidence            679999999999866677778889999999988    777753 35689999999999      9999998889999998


Q ss_pred             Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-ccCCC
Q 016199          162 NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LYFAN  238 (393)
Q Consensus       162 ~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~~~n  238 (393)
                      +.  ++.+.-. ........+...+|++|+|||+..                  .|--=|+||.++.++++... -..|+
T Consensus       132 kt~evt~f~lp-~~~a~~nlet~vfD~~G~lWFt~q------------------~G~yGrLdPa~~~i~vfpaPqG~gpy  192 (353)
T COG4257         132 KTLEVTRFPLP-LEHADANLETAVFDPWGNLWFTGQ------------------IGAYGRLDPARNVISVFPAPQGGGPY  192 (353)
T ss_pred             cccceEEeecc-cccCCCcccceeeCCCccEEEeec------------------cccceecCcccCceeeeccCCCCCCc
Confidence            66  4433211 111223456778999999999942                  22223889988888877443 45699


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchh
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIR  316 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r  316 (393)
                      ||+..+|| .+|+++-..+.|-++|.   ..+..+++..-  +..-.+.|-.|+.|++|++++..               
T Consensus       193 Gi~atpdG-svwyaslagnaiaridp---~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~---------------  253 (353)
T COG4257         193 GICATPDG-SVWYASLAGNAIARIDP---FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT---------------  253 (353)
T ss_pred             ceEECCCC-cEEEEeccccceEEccc---ccCCcceecCCCcccccccccccCccCcEEEeccCC---------------
Confidence            99999999 58999888899999986   34445554311  11113456789999999998855               


Q ss_pred             hhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          317 KVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                         +.+.+||+.-+.-.++..|.  ...-+..++..|++|+.....+.|.|||..+.
T Consensus       254 -------------------g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta  307 (353)
T COG4257         254 -------------------GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA  307 (353)
T ss_pred             -------------------ceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence                               56999999887777777665  33334445666999999999999999997554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.74  E-value=3.7e-15  Score=162.33  Aligned_cols=247  Identities=18%  Similarity=0.205  Sum_probs=170.9

Q ss_pred             cCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec--------------CCCceeeeEECCCCCCCC
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN--------------TGGRPLGIAFANSDPDAD  143 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~--------------~~~~p~gl~~d~~G~~~~  143 (393)
                      ..++..|.++++|+.++.||++.. +++|.+++.++..    ...+..              ...+|.||+++++|    
T Consensus       564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~----i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g----  635 (1057)
T PLN02919        564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF----IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK----  635 (1057)
T ss_pred             cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCE----EEEEccCCCcCCCCCchhccccCCCcEEEEeCCC----
Confidence            345788999999986556888765 7799999987653    222211              12369999999876    


Q ss_pred             ceEEEEEeCCCc-eEEEeCCc--eEEEeec------cCC------ccccccccEEEcC-CCcEEEEeCCCccchhhheeh
Q 016199          144 RITMIVADAYKG-LLKISGNS--TVLLTDE------AEG------QKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILD  207 (393)
Q Consensus       144 ~~~L~v~~~~~g-l~~id~~g--~~~l~~~------~~g------~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~  207 (393)
                       +.|||+|.++. |.++|..+  .+.+...      ..+      ..++.|.++++++ +|.+|++|             
T Consensus       636 -n~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad-------------  701 (1057)
T PLN02919        636 -NLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM-------------  701 (1057)
T ss_pred             -CEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE-------------
Confidence             15999998654 77788754  4444321      111      1256788999999 67999998             


Q ss_pred             hcccCCCcEEEEEeCCCCeEEEEec---------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcce
Q 016199          208 IFEGKPNGRLLSFDPVTKETKVLVS---------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRV  272 (393)
Q Consensus       208 ~~e~~~~g~l~~~d~~t~~~~~~~~---------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~  272 (393)
                          ..+++|++||+.++.+..+..               .+..|+||++++||+.+||+++.+++|.+|++++..   .
T Consensus       702 ----~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~---~  774 (1057)
T PLN02919        702 ----AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG---S  774 (1057)
T ss_pred             ----CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc---E
Confidence                345678888887776554321               245799999999999999999999999999986421   1


Q ss_pred             eeee-------c--------------cCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCC
Q 016199          273 EKFI-------E--------------TLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPM  331 (393)
Q Consensus       273 ~~~~-------~--------------~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  331 (393)
                      ..+.       .              ..-..|.++++|++|++||+....                              
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------------------------------  824 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------------------------------  824 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------------------------------
Confidence            1110       0              011258999999999999998754                              


Q ss_pred             CCCCceEEEECCCCcEEEEee-CC------------CCCccEE-EEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          332 GKSSSGVFIVDLDGKPIAHYY-DP------------EMSLISS-AIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       332 ~~~~~~v~~~d~~g~~~~~~~-d~------------~~~~~~~-~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                          +.|.++|+++..+..+. .+            .+..... +...+|+||++...++.|.++++.+..
T Consensus       825 ----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        825 ----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             ----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence                46888888765554332 11            0222333 344568999999999999999987654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.60  E-value=5.4e-13  Score=119.53  Aligned_cols=243  Identities=11%  Similarity=0.084  Sum_probs=171.1

Q ss_pred             ccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC----CCceeeeEECCCCCCCCceE
Q 016199           71 LQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT----GGRPLGIAFANSDPDADRIT  146 (393)
Q Consensus        71 l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~----~~~p~gl~~d~~G~~~~~~~  146 (393)
                      .-+++++..|.=..|..|.+++||. .|+....-.|.|+++++..    ++.|.-.    ....+...||+.|      +
T Consensus        92 tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~aI~R~dpkt~e----vt~f~lp~~~a~~nlet~vfD~~G------~  160 (353)
T COG4257          92 TGEVETYPLGSGASPHGIVVGPDGS-AWITDTGLAIGRLDPKTLE----VTRFPLPLEHADANLETAVFDPWG------N  160 (353)
T ss_pred             CCceEEEecCCCCCCceEEECCCCC-eeEecCcceeEEecCcccc----eEEeecccccCCCcccceeeCCCc------c
Confidence            3455666666557899999999998 7776655489999998877    7777533    2345678999999      9


Q ss_pred             EEEEeCCCceE-EEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199          147 MIVADAYKGLL-KISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV  223 (393)
Q Consensus       147 L~v~~~~~gl~-~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~  223 (393)
                      ||+... .|.+ ++|+..  ++++... +|   ..+++|++.+||.+|++..                 ....|-++|+.
T Consensus       161 lWFt~q-~G~yGrLdPa~~~i~vfpaP-qG---~gpyGi~atpdGsvwyasl-----------------agnaiaridp~  218 (353)
T COG4257         161 LWFTGQ-IGAYGRLDPARNVISVFPAP-QG---GGPYGICATPDGSVWYASL-----------------AGNAIARIDPF  218 (353)
T ss_pred             EEEeec-cccceecCcccCceeeeccC-CC---CCCcceEECCCCcEEEEec-----------------cccceEEcccc
Confidence            999854 4433 778755  4444322 33   3477999999999999962                 23468899998


Q ss_pred             CCeEEEEecCcc---CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee-eccCCCCCCeEEECCCCCEEEEEe
Q 016199          224 TKETKVLVSDLY---FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF-IETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       224 t~~~~~~~~~l~---~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~-~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++..+++.....   -...|-.++.| .+|+++..++++.+|+....   +-..+ .......|..+.+|..|++|....
T Consensus       219 ~~~aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~~grVW~sea  294 (353)
T COG4257         219 AGHAEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDRHGRVWLSEA  294 (353)
T ss_pred             cCCcceecCCCcccccccccccCccC-cEEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeeccCCcEEeecc
Confidence            886555432211   12335556667 69999999999999997532   22222 112223688999999999999877


Q ss_pred             cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCC-CccEEEEEeCCEEEEEecCCCe
Q 016199          300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEM-SLISSAIKIGDHLYCGSVHHRG  378 (393)
Q Consensus       300 ~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~-~~~~~~~~~~g~Lyigs~~~~~  378 (393)
                      ..                                  +.|.+||++...+..|.-+.. ..........|.+|++.-..+.
T Consensus       295 ~a----------------------------------gai~rfdpeta~ftv~p~pr~n~gn~ql~gr~ge~W~~e~gvd~  340 (353)
T COG4257         295 DA----------------------------------GAIGRFDPETARFTVLPIPRPNSGNIQLDGRPGELWFTEAGVDA  340 (353)
T ss_pred             cc----------------------------------CceeecCcccceEEEecCCCCCCCceeccCCCCceeecccCcce
Confidence            54                                  679999999999999886652 2233334456899999877787


Q ss_pred             EEEEeC
Q 016199          379 ILHLDV  384 (393)
Q Consensus       379 i~~~~~  384 (393)
                      +.+++.
T Consensus       341 lv~~r~  346 (353)
T COG4257         341 LVTTRI  346 (353)
T ss_pred             eEEEEe
Confidence            777653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=1.6e-12  Score=126.13  Aligned_cols=261  Identities=17%  Similarity=0.213  Sum_probs=157.9

Q ss_pred             cccccCceEEecCccCCCceEEEecCCCEEEEEec----CCeEEEEEcCCCCCcc-eeeeeecCCCceeeeEECCCCCCC
Q 016199           68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE----DGWIKRVTLNDSPADS-LVHNWINTGGRPLGIAFANSDPDA  142 (393)
Q Consensus        68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~----~g~I~~~~~~~~~~~~-~~~~~~~~~~~p~gl~~d~~G~~~  142 (393)
                      +..|...+.+..  ...|..+++++++++||+...    .+.|..|..+...+.. .+......+..|..++++++|   
T Consensus        24 ~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g---   98 (345)
T PF10282_consen   24 TGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDG---   98 (345)
T ss_dssp             TTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTS---
T ss_pred             CCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCC---
Confidence            455555555444  378999999999999999877    3577776665431111 122233356789999999998   


Q ss_pred             CceEEEEEeCCCc---eEEEeCCc-eEEEee--c-------cCCccccccccEEEcCCC-cEEEEeCCCccchhhheehh
Q 016199          143 DRITMIVADAYKG---LLKISGNS-TVLLTD--E-------AEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDI  208 (393)
Q Consensus       143 ~~~~L~v~~~~~g---l~~id~~g-~~~l~~--~-------~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~  208 (393)
                        +.||+++...|   ++.++.+| ......  .       .......++|.+.++||| .+|++|.+            
T Consensus        99 --~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------  164 (345)
T PF10282_consen   99 --RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------  164 (345)
T ss_dssp             --SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------
T ss_pred             --CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------
Confidence              36888876555   45566666 222211  0       111234678999999998 58888843            


Q ss_pred             cccCCCcEEEEEeCCC--CeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee--eccCC
Q 016199          209 FEGKPNGRLLSFDPVT--KETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF--IETLP  280 (393)
Q Consensus       209 ~e~~~~g~l~~~d~~t--~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~--~~~l~  280 (393)
                           ..+|+.|+.+.  +++...    ......|..+++++|++++|+.+...+.|..|+++.+ .+..+..  +..+|
T Consensus       165 -----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~  238 (345)
T PF10282_consen  165 -----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLP  238 (345)
T ss_dssp             -----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCE
T ss_pred             -----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeecc
Confidence                 34566665543  335431    2334568899999999999999999999999998732 1222211  11121


Q ss_pred             ----C--CCCeEEECCCCCE-EEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEE--EE
Q 016199          281 ----G--LPDNIRYDGEGHY-LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPI--AH  350 (393)
Q Consensus       281 ----g--~P~~i~~d~~G~l-wva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~--~~  350 (393)
                          +  .|.+|++++||++ |++.. +.+.                               =.++.+|.+ |++.  ..
T Consensus       239 ~~~~~~~~~~~i~ispdg~~lyvsnr-~~~s-------------------------------I~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  239 EGFTGENAPAEIAISPDGRFLYVSNR-GSNS-------------------------------ISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             TTSCSSSSEEEEEE-TTSSEEEEEEC-TTTE-------------------------------EEEEEECTTTTTEEEEEE
T ss_pred             ccccccCCceeEEEecCCCEEEEEec-cCCE-------------------------------EEEEEEecCCCceEEEEE
Confidence                1  4677999999994 55544 3211                               025666554 4432  22


Q ss_pred             eeC-CCCCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199          351 YYD-PEMSLISSAIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       351 ~~d-~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                      +.. ...+....+.+++.+||+++-.++.|..|+++
T Consensus       287 ~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  287 VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            332 22222222334668899999999999998774

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.57  E-value=7.1e-12  Score=120.79  Aligned_cols=256  Identities=13%  Similarity=0.117  Sum_probs=152.9

Q ss_pred             ccccCceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCC-CCCcceeeeeecCCCceeeeEECCCCCCCCceE
Q 016199           69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLND-SPADSLVHNWINTGGRPLGIAFANSDPDADRIT  146 (393)
Q Consensus        69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~-~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~  146 (393)
                      ..+...+.+..+  .+|..++++++++.||++.. +++|..|+.+. +.  ..........+.|.+++++++|     +.
T Consensus        23 g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~--l~~~~~~~~~~~p~~i~~~~~g-----~~   93 (330)
T PRK11028         23 GALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA--LTFAAESPLPGSPTHISTDHQG-----RF   93 (330)
T ss_pred             CceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc--eEEeeeecCCCCceEEEECCCC-----CE
Confidence            344444555443  46888999999999999875 67787777652 22  0011111234679999999998     35


Q ss_pred             EEEEeCCCc-eEEEeC--Cc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199          147 MIVADAYKG-LLKISG--NS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFD  221 (393)
Q Consensus       147 L~v~~~~~g-l~~id~--~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d  221 (393)
                      +|++....+ |..++.  +| .........+  ...++.++++++| .+|+++                 ...+.|..||
T Consensus        94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~-----------------~~~~~v~v~d  154 (330)
T PRK11028         94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPC-----------------LKEDRIRLFT  154 (330)
T ss_pred             EEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEee-----------------CCCCEEEEEE
Confidence            788865443 555543  44 2111111222  2347889999998 577776                 2345677777


Q ss_pred             CCC-CeEEE------EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--ccCC------CCCCeE
Q 016199          222 PVT-KETKV------LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--ETLP------GLPDNI  286 (393)
Q Consensus       222 ~~t-~~~~~------~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~~l~------g~P~~i  286 (393)
                      .++ +.+..      -......|.++++++||+++|+++...+.|..|+++.. .+..+...  ...|      ..|..+
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i  233 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADI  233 (330)
T ss_pred             ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeE
Confidence            654 33221      11123568999999999999999998999999998632 12222211  1111      234468


Q ss_pred             EECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEE---EeeCCCCCccEEE
Q 016199          287 RYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIA---HYYDPEMSLISSA  362 (393)
Q Consensus       287 ~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~---~~~d~~~~~~~~~  362 (393)
                      +++++|+ +|++....+ .                               =.++.++.++....   .+..+.....-.+
T Consensus       234 ~~~pdg~~lyv~~~~~~-~-------------------------------I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~  281 (330)
T PRK11028        234 HITPDGRHLYACDRTAS-L-------------------------------ISVFSVSEDGSVLSFEGHQPTETQPRGFNI  281 (330)
T ss_pred             EECCCCCEEEEecCCCC-e-------------------------------EEEEEEeCCCCeEEEeEEEeccccCCceEE
Confidence            8999998 555432221 0                               12555566664333   2322222222233


Q ss_pred             EEeCCEEEEEecCCCeEEEEeCC
Q 016199          363 IKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       363 ~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                      .+++.+||+++..++.|..++++
T Consensus       282 ~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        282 DHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEc
Confidence            45667999998878888888764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.54  E-value=2.7e-12  Score=140.15  Aligned_cols=189  Identities=16%  Similarity=0.306  Sum_probs=133.3

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-----------------CCCceeeeEECC-CCCCC
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-----------------TGGRPLGIAFAN-SDPDA  142 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-----------------~~~~p~gl~~d~-~G~~~  142 (393)
                      +..|.+|+++++++.||+++. +++|.+++..++.    +..+..                 ....|.++++++ +|   
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g---  695 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE---  695 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC---
Confidence            567999999998888898775 5688889887654    443321                 123689999998 67   


Q ss_pred             CceEEEEEeCCC-ceEEEeCCc--eEEEeec-----cCC-----ccccccccEEEcCCCc-EEEEeCCCccchhhheehh
Q 016199          143 DRITMIVADAYK-GLLKISGNS--TVLLTDE-----AEG-----QKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDI  208 (393)
Q Consensus       143 ~~~~L~v~~~~~-gl~~id~~g--~~~l~~~-----~~g-----~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~  208 (393)
                         .+||++... .|.+++..+  ...+...     ..+     ..+..|++|+++++|. ||++|              
T Consensus       696 ---~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--------------  758 (1057)
T PLN02919        696 ---KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--------------  758 (1057)
T ss_pred             ---eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--------------
Confidence               899998754 477888754  3222210     011     1245789999999985 99998              


Q ss_pred             cccCCCcEEEEEeCCCCeEEEEec----------------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          209 FEGKPNGRLLSFDPVTKETKVLVS----------------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       209 ~e~~~~g~l~~~d~~t~~~~~~~~----------------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                         ..+++|.+||++++..+.+..                      .+..|.|+++++||+ +||+++.+++|.+|+.++
T Consensus       759 ---s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        759 ---SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             ---CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC
Confidence               445689999988765443321                      134689999999994 999999999999999864


Q ss_pred             CCCcceeeeec-c------------CCCCCCeEEECCCCCEEEEEecC
Q 016199          267 KNAGRVEKFIE-T------------LPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       267 ~~~~~~~~~~~-~------------l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ..   ...+.. +            .-..|.++++|++|++||+....
T Consensus       835 g~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N  879 (1057)
T PLN02919        835 KR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN  879 (1057)
T ss_pred             Ce---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence            32   111110 0            01258999999999999987644

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.51  E-value=4.6e-12  Score=111.16  Aligned_cols=234  Identities=18%  Similarity=0.230  Sum_probs=143.9

Q ss_pred             EEEecC-CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-eeeEEC-CCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           88 LLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFA-NSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        88 ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d-~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      +.|+.+ +.++|+....|.|.|+|..++.    +.... ..+.| .+..+- .+|+     ..++..-+......+.++ 
T Consensus        20 p~w~~~~~sLl~VDi~ag~v~r~D~~qn~----v~ra~-ie~p~~ag~ilpv~~~~-----q~~~v~~G~kf~i~nwd~~   89 (310)
T KOG4499|consen   20 PHWDVERQSLLYVDIEAGEVHRYDIEQNK----VYRAK-IEGPPSAGFILPVEGGP-----QEFAVGCGSKFVIVNWDGV   89 (310)
T ss_pred             CceEEecceEEEEEeccCceehhhhhhhh----eEEEE-EecCcceeEEEEecCCC-----ceEEEeecceEEEEEcccc
Confidence            345553 3467888889999999887655    33321 11221 222221 1221     344443344444444443 


Q ss_pred             ---eEEEee--ccC-CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          164 ---TVLLTD--EAE-GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       164 ---~~~l~~--~~~-g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                         ..++.+  +.+ ...-+.-|+-.+||+|+.|.+.++.       .-+.+|. -.|.|+++-+ .++++.+-..+..+
T Consensus        90 ~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-------~~~~le~-~~g~Ly~~~~-~h~v~~i~~~v~Is  160 (310)
T KOG4499|consen   90 SESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-------FGDDLEP-IGGELYSWLA-GHQVELIWNCVGIS  160 (310)
T ss_pred             cceeeeeeeccccCchHHhcccccCccCCCCceeeeeecc-------ccccccc-cccEEEEecc-CCCceeeehhccCC
Confidence               222222  111 1122334666899999999886432       1122332 2344555544 57888888888899


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEE--ecCCCCcceeeeec--c----CCCCCCeEEECCCCCEEEEEecCcchhhhhh
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFY--IKGKNAGRVEKFIE--T----LPGLPDNIRYDGEGHYLIALATEFSTYWDLA  309 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~--~~g~~~~~~~~~~~--~----l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~  309 (393)
                      ||++++.|.+..|+.++.+..|..|+  ..+......+++.+  +    .+-.|||+++|.+|++||+++.+        
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng--------  232 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG--------  232 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--------
Confidence            99999999999999999999995555  54433333333322  1    23479999999999999999976        


Q ss_pred             hcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--CCccEEEEEeCCEEEEEec
Q 016199          310 YRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--MSLISSAIKIGDHLYCGSV  374 (393)
Q Consensus       310 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~  374 (393)
                                                +.|+++|+ .|+++..+..|.  ...++++...=+.||++..
T Consensus       233 --------------------------~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  233 --------------------------GTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             --------------------------cEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence                                      56999998 689988887775  3333443333377888864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=7.6e-11  Score=109.54  Aligned_cols=261  Identities=16%  Similarity=0.186  Sum_probs=164.1

Q ss_pred             ccccCceEEecCccCCCceEEEecCCCEEEEEecC---CeEEEEEcCCCCCcceeeee---ecCCCceeeeEECCCCCCC
Q 016199           69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCED---GWIKRVTLNDSPADSLVHNW---INTGGRPLGIAFANSDPDA  142 (393)
Q Consensus        69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~---g~I~~~~~~~~~~~~~~~~~---~~~~~~p~gl~~d~~G~~~  142 (393)
                      +.+...+++.+  ...|.-|++++++++||++..+   |+|..|..+...+.  .+..   ...+..|..+++|++|   
T Consensus        28 g~l~~~~~v~~--~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~--Lt~ln~~~~~g~~p~yvsvd~~g---  100 (346)
T COG2706          28 GELSLLQLVAE--LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR--LTFLNRQTLPGSPPCYVSVDEDG---  100 (346)
T ss_pred             cccchhhhccc--cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe--EEEeeccccCCCCCeEEEECCCC---
Confidence            34444444433  4778889999999999998764   56665555432111  2222   1234456999999999   


Q ss_pred             CceEEEEEeCCCc---eEEEeCCc-eEEE---eeccC-----CccccccccEEEcCCC-cEEEEeCCCccchhhheehhc
Q 016199          143 DRITMIVADAYKG---LLKISGNS-TVLL---TDEAE-----GQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIF  209 (393)
Q Consensus       143 ~~~~L~v~~~~~g---l~~id~~g-~~~l---~~~~~-----g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~  209 (393)
                        +.+++++...|   ++.+..+| ....   ....+     .....++|...++|+| .+++.|.+             
T Consensus       101 --~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-------------  165 (346)
T COG2706         101 --RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-------------  165 (346)
T ss_pred             --CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-------------
Confidence              23566655555   44455567 2211   11111     1223457888999999 57777743             


Q ss_pred             ccCCCcEEEEEeCCCCeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--ccCC-CC
Q 016199          210 EGKPNGRLLSFDPVTKETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--ETLP-GL  282 (393)
Q Consensus       210 e~~~~g~l~~~d~~t~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~~l~-g~  282 (393)
                          ..+++.|+.+.+.++..    ...-..|..|+|.|++++.|+....+++|..|..++. .++.+.+.  ..+| .+
T Consensus       166 ----~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF  240 (346)
T COG2706         166 ----TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDF  240 (346)
T ss_pred             ----CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCcccc
Confidence                44788777766665543    2334568889999999999999999999999988753 34444332  1222 11


Q ss_pred             C-----CeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC---C
Q 016199          283 P-----DNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD---P  354 (393)
Q Consensus       283 P-----~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d---~  354 (393)
                      .     ..|.+++||++..+++.+.+.+                               .++++|++|..++...-   .
T Consensus       241 ~g~~~~aaIhis~dGrFLYasNRg~dsI-------------------------------~~f~V~~~~g~L~~~~~~~te  289 (346)
T COG2706         241 TGTNWAAAIHISPDGRFLYASNRGHDSI-------------------------------AVFSVDPDGGKLELVGITPTE  289 (346)
T ss_pred             CCCCceeEEEECCCCCEEEEecCCCCeE-------------------------------EEEEEcCCCCEEEEEEEeccC
Confidence            1     2377899999888888664321                               38889998776555432   2


Q ss_pred             CCCccEEEE-EeCCEEEEEecCCCeEEEEeCCCC
Q 016199          355 EMSLISSAI-KIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       355 ~~~~~~~~~-~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                      ....-.+.+ ..++.|+..+-.++.|.+|..++.
T Consensus       290 g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         290 GQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            121122333 345678888888888888876654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.47  E-value=8.4e-12  Score=115.22  Aligned_cols=185  Identities=21%  Similarity=0.377  Sum_probs=127.5

Q ss_pred             eeeeEECC-CCCCCCceEEEEEeCC-CceEEEeCCc-eEEEeeccCCccccccccEEEc-CCCcEEEEeCCCccchhhhe
Q 016199          130 PLGIAFAN-SDPDADRITMIVADAY-KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVA-DDGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       130 p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d-~dG~l~~td~~~~~~~~~~~  205 (393)
                      |.|+++++ +|      .||+.|.. +.|+++++++ ...... ..+     +++++++ ++|.+|+++.          
T Consensus         2 ~Egp~~d~~~g------~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~----------   59 (246)
T PF08450_consen    2 GEGPVWDPRDG------RLYWVDIPGGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS----------   59 (246)
T ss_dssp             EEEEEEETTTT------EEEEEETTTTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------
T ss_pred             CcceEEECCCC------EEEEEEcCCCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------
Confidence            56888997 88      99999974 4599999887 322221 111     6688998 7899999962          


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEEec------CccCCCcEEEcCCCCEEEEEeCCC--------CeEEEEEecCCCCcc
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVLVS------DLYFANGVVLSPDQTHLVYCETSM--------RRCRKFYIKGKNAGR  271 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~------~l~~~ngi~~s~dg~~l~v~~~~~--------~ri~~~~~~g~~~~~  271 (393)
                               +++..+|+++++++.+..      ....||++++++||+ +|+++...        ++|++++.+    ++
T Consensus        60 ---------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~  125 (246)
T PF08450_consen   60 ---------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GK  125 (246)
T ss_dssp             ---------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SE
T ss_pred             ---------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----Ce
Confidence                     346666999998877644      356799999999995 99998765        679999875    33


Q ss_pred             eeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC--CCcEE
Q 016199          272 VEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL--DGKPI  348 (393)
Q Consensus       272 ~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g~~~  348 (393)
                      .....+.+ ..|+||+++++|+ +|++....                                  +.|++++.  ++..+
T Consensus       126 ~~~~~~~~-~~pNGi~~s~dg~~lyv~ds~~----------------------------------~~i~~~~~~~~~~~~  170 (246)
T PF08450_consen  126 VTVVADGL-GFPNGIAFSPDGKTLYVADSFN----------------------------------GRIWRFDLDADGGEL  170 (246)
T ss_dssp             EEEEEEEE-SSEEEEEEETTSSEEEEEETTT----------------------------------TEEEEEEEETTTCCE
T ss_pred             EEEEecCc-ccccceEECCcchheeeccccc----------------------------------ceeEEEeccccccce
Confidence            44454444 3799999999997 67765533                                  45777765  34412


Q ss_pred             ---EEeeC-CC-CCccEE-EEEeCCEEEEEecCCCeEEEEeCC
Q 016199          349 ---AHYYD-PE-MSLISS-AIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       349 ---~~~~d-~~-~~~~~~-~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                         +.+.+ +. ...... ....+|+||++...+..|.+++.+
T Consensus       171 ~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  171 SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence               22322 22 212333 344569999999999999999976

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.43  E-value=1.7e-10  Score=112.87  Aligned_cols=172  Identities=16%  Similarity=0.225  Sum_probs=115.6

Q ss_pred             ccCCCceEEEecCCCEEEEEec------------CC-eEEEEEcCCCCCc-ceeeeeecCCCceeeeEECCCCCCCCceE
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCE------------DG-WIKRVTLNDSPAD-SLVHNWINTGGRPLGIAFANSDPDADRIT  146 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~------------~g-~I~~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~~G~~~~~~~  146 (393)
                      .+..|..|++|++|+ ||++..            .+ +|++++..++.+. ...+.+......|.||++.++|       
T Consensus        12 ~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-------   83 (367)
T TIGR02604        12 LLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-------   83 (367)
T ss_pred             ccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-------
Confidence            478999999999997 888852            23 8998875432211 1134555445679999998877       


Q ss_pred             EEEEeCCCceEEE-eCCc-------eEEEeeccCCc---cccccccEEEcCCCcEEEEeCCCccc--hhhheehhcccCC
Q 016199          147 MIVADAYKGLLKI-SGNS-------TVLLTDEAEGQ---KFKLTDGVDVADDGMIYFTDASNKYY--LREYILDIFEGKP  213 (393)
Q Consensus       147 L~v~~~~~gl~~i-d~~g-------~~~l~~~~~g~---~~~~~~~l~~d~dG~l~~td~~~~~~--~~~~~~~~~e~~~  213 (393)
                      |||++ ...|+++ +.++       .+++.......   ....++++++++||.|||++.+....  ......+..+...
T Consensus        84 lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~  162 (367)
T TIGR02604        84 VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL  162 (367)
T ss_pred             EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence            99985 5568877 4432       23444333322   23458899999999999987643110  0000001112223


Q ss_pred             CcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199          214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKF  262 (393)
Q Consensus       214 ~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~  262 (393)
                      .|++++|+|++++.+.+..++..|+|++++++| .+|+++.......+.
T Consensus       163 ~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~~~~~~i  210 (367)
T TIGR02604       163 GGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWG-DVFFCDNDDPPLCRV  210 (367)
T ss_pred             CceEEEEecCCCeEEEEecCcCCCccceECCCC-CEEEEccCCCceeEE
Confidence            578999999999999999999999999999998 578888765544443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.43  E-value=1.8e-10  Score=111.80  Aligned_cols=209  Identities=15%  Similarity=0.215  Sum_probs=130.3

Q ss_pred             ccccCceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCC-CCcceeeeee----------cCCCceeeeEEC
Q 016199           69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDS-PADSLVHNWI----------NTGGRPLGIAFA  136 (393)
Q Consensus        69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~-~~~~~~~~~~----------~~~~~p~gl~~d  136 (393)
                      ..|.....+..+. ..|-.++++++++.||++.. +|.|..++.+.. ........+.          .....|+.+.++
T Consensus        74 g~L~~~~~~~~~g-~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~  152 (345)
T PF10282_consen   74 GTLTLLNSVPSGG-SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS  152 (345)
T ss_dssp             TEEEEEEEEEESS-SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred             ceeEEeeeeccCC-CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence            4566666665333 68999999999999999986 777877777652 2000011111          123568999999


Q ss_pred             CCCCCCCceEEEEEeCCC-ceEEEeC--Cc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcc
Q 016199          137 NSDPDADRITMIVADAYK-GLLKISG--NS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFE  210 (393)
Q Consensus       137 ~~G~~~~~~~L~v~~~~~-gl~~id~--~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e  210 (393)
                      ++|     +.+|+++.+. .|..++.  ++  +... ....-.+...|..++++++| .+|+.+               |
T Consensus       153 pdg-----~~v~v~dlG~D~v~~~~~~~~~~~l~~~-~~~~~~~G~GPRh~~f~pdg~~~Yv~~---------------e  211 (345)
T PF10282_consen  153 PDG-----RFVYVPDLGADRVYVYDIDDDTGKLTPV-DSIKVPPGSGPRHLAFSPDGKYAYVVN---------------E  211 (345)
T ss_dssp             TTS-----SEEEEEETTTTEEEEEEE-TTS-TEEEE-EEEECSTTSSEEEEEE-TTSSEEEEEE---------------T
T ss_pred             CCC-----CEEEEEecCCCEEEEEEEeCCCceEEEe-eccccccCCCCcEEEEcCCcCEEEEec---------------C
Confidence            998     3689988643 4555543  33  3221 11122223457789999998 688874               3


Q ss_pred             cCCCcEEEEEeCCCCeEEEEec------C---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee--eccC
Q 016199          211 GKPNGRLLSFDPVTKETKVLVS------D---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF--IETL  279 (393)
Q Consensus       211 ~~~~g~l~~~d~~t~~~~~~~~------~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~--~~~l  279 (393)
                      ....-.++.++..++.++....      +   ...+.+|+++|||++||++++..+.|..|+++.. .+..+..  ....
T Consensus       212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~  290 (345)
T PF10282_consen  212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTG  290 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEES
T ss_pred             CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCC
Confidence            3444456666755676654321      1   2257889999999999999999999999999643 2222221  1122


Q ss_pred             CCCCCeEEECCCCC-EEEEEec
Q 016199          280 PGLPDNIRYDGEGH-YLIALAT  300 (393)
Q Consensus       280 ~g~P~~i~~d~~G~-lwva~~~  300 (393)
                      ...|++++++++|+ +||+...
T Consensus       291 G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  291 GKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEETT
T ss_pred             CCCccEEEEeCCCCEEEEEecC
Confidence            34699999999999 4455443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.38  E-value=2e-09  Score=101.02  Aligned_cols=248  Identities=15%  Similarity=0.102  Sum_probs=150.9

Q ss_pred             CCCceEEEecCCCEEEEE-ecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTG-CEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~-~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id  160 (393)
                      ..|.+++++++|+.+|+. ..++.|..|+..++.    ..........+..++++++|     +.+|++... +.+..+|
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~g-----~~l~~~~~~~~~l~~~d  101 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE----VIGTLPSGPDPELFALHPNG-----KILYIANEDDNLVTVID  101 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc----EEEeccCCCCccEEEECCCC-----CEEEEEcCCCCeEEEEE
Confidence            457789999999878765 457889999987654    33222223457788999988     246776543 4477788


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                      .+..+.+.....+   ..+++++++++|.++++..                .....++.+|..+++.......-..+..+
T Consensus       102 ~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (300)
T TIGR03866       102 IETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTS----------------ETTNMAHFIDTKTYEIVDNVLVDQRPRFA  162 (300)
T ss_pred             CCCCeEEeEeeCC---CCcceEEECCCCCEEEEEe----------------cCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence            7652122111111   2356889999997666531                11224666788766554322222457889


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-cc---CCCCCCeEEECCCCCE-EEEEecCcchhhhhhhcCcch
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ET---LPGLPDNIRYDGEGHY-LIALATEFSTYWDLAYRYPFI  315 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~---l~g~P~~i~~d~~G~l-wva~~~~r~~~~~~~~~~~~~  315 (393)
                      ++++||+.++++....++|..|++...+.-....+. ..   ....|.+++++++|++ |++....              
T Consensus       163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--------------  228 (300)
T TIGR03866       163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--------------  228 (300)
T ss_pred             EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC--------------
Confidence            999999988888767789999998643211110111 00   1123567889999985 5554322              


Q ss_pred             hhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCCCC
Q 016199          316 RKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARAI  392 (393)
Q Consensus       316 r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~~~  392 (393)
                                          +.+..+|.+ ++++..+............+++.+||+++...+.|.++|+....++++
T Consensus       229 --------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       229 --------------------NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS  286 (300)
T ss_pred             --------------------CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence                                346677754 555554432221111223446678888876678899999887766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.33  E-value=9.9e-10  Score=105.84  Aligned_cols=192  Identities=14%  Similarity=0.169  Sum_probs=116.4

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCC-CCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLND-SPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~-~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~i  159 (393)
                      ..|..++++++|+.+|++.. ++.|..|+.+. +......... .....|++++++++|     +.+|+++...+ |..+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g-----~~l~v~~~~~~~v~v~  153 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDN-----RTLWVPCLKEDRIRLF  153 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCC-----CEEEEeeCCCCEEEEE
Confidence            36889999999999998875 67788887753 2100001111 112468999999998     36788876544 5556


Q ss_pred             eCC--c-eEEE-eeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEE--eCCCCeEEEEec
Q 016199          160 SGN--S-TVLL-TDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSF--DPVTKETKVLVS  232 (393)
Q Consensus       160 d~~--g-~~~l-~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~--d~~t~~~~~~~~  232 (393)
                      +.+  + .... ...........+++++++++| .+|+++.                 ..+.|..|  +..+++.+....
T Consensus       154 d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-----------------~~~~v~v~~~~~~~~~~~~~~~  216 (330)
T PRK11028        154 TLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-----------------LNSSVDVWQLKDPHGEIECVQT  216 (330)
T ss_pred             EECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-----------------CCCEEEEEEEeCCCCCEEEEEE
Confidence            543  3 2110 000011112457789999998 5778752                 23445544  443455433211


Q ss_pred             ---------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEe
Q 016199          233 ---------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       233 ---------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~  299 (393)
                               +-..+.++.++|||+++|+++...+.|..|+++.+. +..+ +...  ....|.+++++++|++.++..
T Consensus       217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-SVLS-FEGHQPTETQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-CeEE-EeEEEeccccCCceEECCCCCEEEEEE
Confidence                     112344688999999999999888999999985321 1111 1111  123689999999998554444

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.8e-09  Score=100.42  Aligned_cols=210  Identities=15%  Similarity=0.193  Sum_probs=133.2

Q ss_pred             ccccCceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCC-CCCcceeeeeecCCC---------ceeeeEECC
Q 016199           69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLND-SPADSLVHNWINTGG---------RPLGIAFAN  137 (393)
Q Consensus        69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~-~~~~~~~~~~~~~~~---------~p~gl~~d~  137 (393)
                      +.|+...+...- -..|-.+++|++|+.||++.. .|.|.++..+. +.-...+..+.+.+.         .++...+++
T Consensus        76 G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          76 GRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             CeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence            455444333222 256788999999999998886 45566665533 221111122223222         256788899


Q ss_pred             CCCCCCceEEEEEeCC-CceEEEeC-Cc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCC
Q 016199          138 SDPDADRITMIVADAY-KGLLKISG-NS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKP  213 (393)
Q Consensus       138 ~G~~~~~~~L~v~~~~-~gl~~id~-~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~  213 (393)
                      +|     +.|+++|-+ ..|+.++. +| ++... ...-.+...|..|++.|+| ..|+.               .|...
T Consensus       155 ~~-----~~l~v~DLG~Dri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v---------------~EL~s  213 (346)
T COG2706         155 DG-----RYLVVPDLGTDRIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLV---------------NELNS  213 (346)
T ss_pred             CC-----CEEEEeecCCceEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEE---------------eccCC
Confidence            98     246666653 34555543 55 32221 1111333457789999999 46665               45566


Q ss_pred             CcEEEEEeCCCCeEEEEecC---------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCC-
Q 016199          214 NGRLLSFDPVTKETKVLVSD---------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPG-  281 (393)
Q Consensus       214 ~g~l~~~d~~t~~~~~~~~~---------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g-  281 (393)
                      +--++.||+..++++.+..-         -.....|.+++||++||+++++.+.|..|.++.. .+. ..+...  ..| 
T Consensus       214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~-L~~~~~~~teg~  291 (346)
T COG2706         214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-GGK-LELVGITPTEGQ  291 (346)
T ss_pred             EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-CCE-EEEEEEeccCCc
Confidence            67789999887888776432         2334568899999999999999999999998743 222 223222  223 


Q ss_pred             CCCeEEECCCCCEEEEEecCc
Q 016199          282 LPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       282 ~P~~i~~d~~G~lwva~~~~r  302 (393)
                      .|+.+.+++.|++.++.+...
T Consensus       292 ~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         292 FPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             CCccceeCCCCCEEEEEccCC
Confidence            599999999999999887553

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.13  E-value=1.8e-07  Score=87.61  Aligned_cols=225  Identities=14%  Similarity=0.189  Sum_probs=129.1

Q ss_pred             EE-EEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCCceEEEeeccCCc
Q 016199           97 IY-TGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKISGNSTVLLTDEAEGQ  174 (393)
Q Consensus        97 L~-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g~~~l~~~~~g~  174 (393)
                      +| ++..++.|..|+.+++.   ....+ .....+.+++++++|     +.+|++... +.|..+|.++.+.+.....+ 
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~---~~~~~-~~~~~~~~l~~~~dg-----~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-   72 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLE---VTRTF-PVGQRPRGITLSKDG-----KLLYVCASDSDTIQVIDLATGEVIGTLPSG-   72 (300)
T ss_pred             EEEEecCCCEEEEEECCCCc---eEEEE-ECCCCCCceEECCCC-----CEEEEEECCCCeEEEEECCCCcEEEeccCC-
Confidence            44 44568889999987654   13333 334568899999998     146676544 44777887541111111111 


Q ss_pred             cccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEe
Q 016199          175 KFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCE  253 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~  253 (393)
                        ..+..++++++|+ +|++.                 ...+.|..||..+++..........++++++++||+.++++.
T Consensus        73 --~~~~~~~~~~~g~~l~~~~-----------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  133 (300)
T TIGR03866        73 --PDPELFALHPNGKILYIAN-----------------EDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS  133 (300)
T ss_pred             --CCccEEEECCCCCEEEEEc-----------------CCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe
Confidence              1244678899985 66663                 224579999987765433222234578999999998887776


Q ss_pred             CCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE-EEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCC
Q 016199          254 TSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL-IALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMG  332 (393)
Q Consensus       254 ~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw-va~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  332 (393)
                      .....+..|+..+.   ...... .....|..++++++|+++ ++....                               
T Consensus       134 ~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~-------------------------------  178 (300)
T TIGR03866       134 ETTNMAHFIDTKTY---EIVDNV-LVDQRPRFAEFTADGKELWVSSEIG-------------------------------  178 (300)
T ss_pred             cCCCeEEEEeCCCC---eEEEEE-EcCCCccEEEECCCCCEEEEEcCCC-------------------------------
Confidence            55455666675422   211111 122357788999999855 443212                               


Q ss_pred             CCCceEEEECCC-CcEEEEeeC--CC-----CCccEE-EEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          333 KSSSGVFIVDLD-GKPIAHYYD--PE-----MSLISS-AIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       333 ~~~~~v~~~d~~-g~~~~~~~d--~~-----~~~~~~-~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                         +.|..+|.+ ++.+..+..  +.     ...... +.+++..+|++....+.+..+|++...
T Consensus       179 ---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~  240 (300)
T TIGR03866       179 ---GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE  240 (300)
T ss_pred             ---CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence               346666653 444444321  11     111112 233455677776666778888876544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=99.10  E-value=4.1e-09  Score=99.68  Aligned_cols=170  Identities=22%  Similarity=0.386  Sum_probs=116.9

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY  153 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~  153 (393)
                      ...+......+||.+.+|+.+.--|++..+|++..|......    +..+....        +...      .-..++. 
T Consensus        45 ~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~G----wv~~~~~~--------~s~~------~~~~~~~-  105 (376)
T KOG1520|consen   45 GKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDG----WVKFADTK--------DSTN------RSQCCDP-  105 (376)
T ss_pred             cccccccccCChhhheecccCCCceEEEECCceEEEeccCce----EEEEEecc--------cccc------ccccCCC-
Confidence            344445557999999999988768999999999988765322    33332211        0010      1111110 


Q ss_pred             CceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          154 KGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       154 ~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                               + ..-.....|+|+    ||+++..| ++||+|+..                  +|+..++.++..+.+.+
T Consensus       106 ---------~-~~~~e~~CGRPL----Gl~f~~~ggdL~VaDAYl------------------GL~~V~p~g~~a~~l~~  153 (376)
T KOG1520|consen  106 ---------G-SFETEPLCGRPL----GIRFDKKGGDLYVADAYL------------------GLLKVGPEGGLAELLAD  153 (376)
T ss_pred             ---------c-ceecccccCCcc----eEEeccCCCeEEEEecce------------------eeEEECCCCCcceeccc
Confidence                     1 011113446665    89999987 999998643                  79999999888666544


Q ss_pred             C-----ccCCCcEEEcCCCCEEEEEeCC-----------------CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC
Q 016199          233 D-----LYFANGVVLSPDQTHLVYCETS-----------------MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG  290 (393)
Q Consensus       233 ~-----l~~~ngi~~s~dg~~l~v~~~~-----------------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~  290 (393)
                      .     ..+.|++.++++| .+||++++                 ++|+++||..   +...+++++++- +|+|++.++
T Consensus       154 ~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~---tK~~~VLld~L~-F~NGlaLS~  228 (376)
T KOG1520|consen  154 EAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS---TKVTKVLLDGLY-FPNGLALSP  228 (376)
T ss_pred             cccCeeeeecCceeEcCCC-eEEEeccccccchhheEEeeecCCCccceEEecCc---ccchhhhhhccc-ccccccCCC
Confidence            3     5689999999955 79999976                 5899999974   345667787776 899999999


Q ss_pred             CCCEEEEEe
Q 016199          291 EGHYLIALA  299 (393)
Q Consensus       291 ~G~lwva~~  299 (393)
                      |+.+.+-+-
T Consensus       229 d~sfvl~~E  237 (376)
T KOG1520|consen  229 DGSFVLVAE  237 (376)
T ss_pred             CCCEEEEEe
Confidence            999765544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=3e-07  Score=88.38  Aligned_cols=260  Identities=13%  Similarity=0.075  Sum_probs=145.7

Q ss_pred             CEEEEEecC-----CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC---------C-CceEEE
Q 016199           95 KLIYTGCED-----GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA---------Y-KGLLKI  159 (393)
Q Consensus        95 ~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~---------~-~gl~~i  159 (393)
                      +.+|+.+..     ++|+.+|.++.+    +......+.+|+++ +.+||     +.||+|..         . .-|..+
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~----v~g~i~~G~~P~~~-~spDg-----~~lyva~~~~~R~~~G~~~d~V~v~   82 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGR----VLGMTDGGFLPNPV-VASDG-----SFFAHASTVYSRIARGKRTDYVEVI   82 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCE----EEEEEEccCCCcee-ECCCC-----CEEEEEeccccccccCCCCCEEEEE
Confidence            457766553     789999988766    55555678899997 99988     37999987         2 237778


Q ss_pred             eCCceEEEee-ccCCc----cccccccEEEcCCC-cEEEEeCCCccc-------h---------hh--heehhcccC---
Q 016199          160 SGNSTVLLTD-EAEGQ----KFKLTDGVDVADDG-MIYFTDASNKYY-------L---------RE--YILDIFEGK---  212 (393)
Q Consensus       160 d~~g~~~l~~-~~~g~----~~~~~~~l~~d~dG-~l~~td~~~~~~-------~---------~~--~~~~~~e~~---  212 (393)
                      |....+.... .....    ....++.+++++|| .+|+.+..-...       -         ++  .++...|..   
T Consensus        83 D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~  162 (352)
T TIGR02658        83 DPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM  162 (352)
T ss_pred             ECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE
Confidence            8766222211 11111    12446688999999 688887541110       0         00  011111100   


Q ss_pred             --CCcEEEE--EeCCCCeEEE----EecC---ccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeee---ec
Q 016199          213 --PNGRLLS--FDPVTKETKV----LVSD---LYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKF---IE  277 (393)
Q Consensus       213 --~~g~l~~--~d~~t~~~~~----~~~~---l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~---~~  277 (393)
                        ..|+...  ++.+ ++...    +.+.   .-+.+. .+++ ||+.+|++..  +.|+..++.+......+.+   ..
T Consensus       163 ~~~Dg~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~  238 (352)
T TIGR02658       163 HCRDGSLAKVGYGTK-GNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTE  238 (352)
T ss_pred             EeecCceEEEEecCC-CceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccc
Confidence              1111111  1111 11111    1000   111222 3345 8888888765  9999999866532222222   11


Q ss_pred             cCC--C-CCCe---EEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEE
Q 016199          278 TLP--G-LPDN---IRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIA  349 (393)
Q Consensus       278 ~l~--g-~P~~---i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~  349 (393)
                      ...  + .|.|   ++++++|+ +||++.....                         +-+..+.+.|..+|. .++++.
T Consensus       239 ~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~-------------------------~thk~~~~~V~ViD~~t~kvi~  293 (352)
T TIGR02658       239 AEKADGWRPGGWQQVAYHRARDRIYLLADQRAK-------------------------WTHKTASRFLFVVDAKTGKRLR  293 (352)
T ss_pred             cccccccCCCcceeEEEcCCCCEEEEEecCCcc-------------------------ccccCCCCEEEEEECCCCeEEE
Confidence            111  1 3555   99998865 8887753310                         001112246999997 467777


Q ss_pred             EeeCCCCCccEEEEEeCC-EEEEEecCCCeEEEEeCCCCCCCCCC
Q 016199          350 HYYDPEMSLISSAIKIGD-HLYCGSVHHRGILHLDVNQHPARAII  393 (393)
Q Consensus       350 ~~~d~~~~~~~~~~~~~g-~Lyigs~~~~~i~~~~~~~~~~~~~~  393 (393)
                      .+..+....--.+..++. .||..+..++.|..+|......+++|
T Consensus       294 ~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       294 KIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            777655222223455667 89999888889999999887776553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.01  E-value=2.3e-08  Score=96.44  Aligned_cols=159  Identities=16%  Similarity=0.246  Sum_probs=85.2

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee----cCCCceeeeEECCC----CCCCCceEEEEEeCCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI----NTGGRPLGIAFANS----DPDADRITMIVADAYK  154 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~----~~~~~p~gl~~d~~----G~~~~~~~L~v~~~~~  154 (393)
                      ..|.+|++.|||+ +|++...|+|++++.++.. ...+....    ......++++++++    +      .||++....
T Consensus         2 ~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~------~lYv~~t~~   73 (331)
T PF07995_consen    2 NNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSL-KTPVADLPEVFADGERGLLGIAFHPDFASNG------YLYVYYTNA   73 (331)
T ss_dssp             SSEEEEEEETTSC-EEEEETTTEEEEEETTTEE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-------EEEEEEEEE
T ss_pred             CCceEEEEeCCCc-EEEEeCCceEEEEeCCCcC-cceecccccccccccCCcccceeccccCCCC------EEEEEEEcc
Confidence            5689999999986 8899999999999944432 11111111    11245799999984    7      899986532


Q ss_pred             ---------ceEEEeC--Cc-----eEEEeeccCC--ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE
Q 016199          155 ---------GLLKISG--NS-----TVLLTDEAEG--QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR  216 (393)
Q Consensus       155 ---------gl~~id~--~g-----~~~l~~~~~g--~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~  216 (393)
                               .|.++..  ..     .+.+......  ........|++++||.||++......  .+...+.  ....|.
T Consensus        74 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~--~~~~G~  149 (331)
T PF07995_consen   74 DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDP--NSLRGK  149 (331)
T ss_dssp             -TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCST--TSSTTE
T ss_pred             cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccccc--ccccce
Confidence                     3666532  21     2223221111  12233457999999999998654322  0111111  123466


Q ss_pred             EEEEeCCCC-------------eEEEEecCccCCCcEEEcCCCCEEEEEe
Q 016199          217 LLSFDPVTK-------------ETKVLVSDLYFANGVVLSPDQTHLVYCE  253 (393)
Q Consensus       217 l~~~d~~t~-------------~~~~~~~~l~~~ngi~~s~dg~~l~v~~  253 (393)
                      |+|+++++.             ..+.++.++..|.++++++....||++|
T Consensus       150 ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d  199 (331)
T PF07995_consen  150 ILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAAD  199 (331)
T ss_dssp             EEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEE
T ss_pred             EEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEc
Confidence            777776543             2234455555555555555522455555

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=2.4e-07  Score=91.17  Aligned_cols=186  Identities=17%  Similarity=0.194  Sum_probs=132.2

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~  158 (393)
                      ..|.++++.+.++.+|+.+. ++.|..++.....    .......+..|.+++++++|     +.+||++..   .-+..
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~----~~~~~~vG~~P~~~~~~~~~-----~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT----VLGSIPVGLGPVGLAVDPDG-----KYVYVANAGNGNNTVSV  144 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccc----eeeEeeeccCCceEEECCCC-----CEEEEEecccCCceEEE
Confidence            67889999999998998876 4688888866544    44444555689999999988     489999884   34778


Q ss_pred             EeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-----Eec
Q 016199          159 ISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-----LVS  232 (393)
Q Consensus       159 id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-----~~~  232 (393)
                      +|.++..+......|.   .+.+++++++|. +|+++                 ...++|..+|..+.....     ...
T Consensus       145 id~~t~~~~~~~~vG~---~P~~~a~~p~g~~vyv~~-----------------~~~~~v~vi~~~~~~v~~~~~~~~~~  204 (381)
T COG3391         145 IDAATNKVTATIPVGN---TPTGVAVDPDGNKVYVTN-----------------SDDNTVSVIDTSGNSVVRGSVGSLVG  204 (381)
T ss_pred             EeCCCCeEEEEEecCC---CcceEEECCCCCeEEEEe-----------------cCCCeEEEEeCCCcceeccccccccc
Confidence            8877622222222221   246999999995 99997                 345789999987665553     123


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ....|.++.+++||..+|+.+..+  +++.+++...........-. ... .|.++.++++|.++....
T Consensus       205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~  271 (381)
T COG3391         205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVAN  271 (381)
T ss_pred             cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEe
Confidence            356799999999999999999887  69999987543211111111 222 588999999999665553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=7.8e-07  Score=87.50  Aligned_cols=245  Identities=16%  Similarity=0.203  Sum_probs=158.1

Q ss_pred             CCceEEEecCCCEEEEEecCC-eEEEEEcCCCCCcceeeeeecCC-CceeeeEECCCCCCCCceEEEEEeCC-CceEEEe
Q 016199           84 GPEDLLYDAHSKLIYTGCEDG-WIKRVTLNDSPADSLVHNWINTG-GRPLGIAFANSDPDADRITMIVADAY-KGLLKIS  160 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g-~I~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id  160 (393)
                      +|-.+++.+++..+|+..... .+..++.....    ++.....+ ..|.++++.+.|     .++|+.+.. ..+..+|
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~----~~~~~~~g~~~p~~i~v~~~~-----~~vyv~~~~~~~v~vid  102 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT----VTQSLSVGGVYPAGVAVNPAG-----NKVYVTTGDSNTVSVID  102 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccce----eeeeccCCCccccceeeCCCC-----CeEEEecCCCCeEEEEc
Confidence            788899999997788776433 45555444222    33333333 678999999888     259999764 5688888


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG  239 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng  239 (393)
                      .+..+.+....-|   ..+.+++++++| .+|+++...               .++.+..+|..+++..........|.+
T Consensus       103 ~~~~~~~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~  164 (381)
T COG3391         103 TATNTVLGSIPVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTG  164 (381)
T ss_pred             CcccceeeEeeec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcce
Confidence            5442222211112   257899999988 899998421               356899999998876655333346799


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc-e-eeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR-V-EKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIR  316 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~-~-~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r  316 (393)
                      ++++++|..+|+++...++|..++.++....+ . .... .....|.+++++++|. +|++.....              
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~--------------  229 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSG--------------  229 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCC--------------
Confidence            99999999999999999999999976543211 0 0011 2234689999999999 777665431              


Q ss_pred             hhhhhhhhhhCCCCCCCCCceEEEECCCC-cEEEE-eeCCC-CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          317 KVSGMVVRYLGMPPMGKSSSGVFIVDLDG-KPIAH-YYDPE-MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~-~~d~~-~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                                        .+.+.++|... .++.. +.-.. ........+++..+|+.....+.+..+|.....
T Consensus       230 ------------------~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         230 ------------------SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             ------------------CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence                              13577777643 34333 12111 122233445567788877667777777765543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.98  E-value=2e-07  Score=87.83  Aligned_cols=188  Identities=16%  Similarity=0.161  Sum_probs=117.9

Q ss_pred             eeeeEECCCCCCCCceEEEEEeCCC-------------ceEEEeCCc---eEEEe-eccCCccccccccEEEcCC-----
Q 016199          130 PLGIAFANSDPDADRITMIVADAYK-------------GLLKISGNS---TVLLT-DEAEGQKFKLTDGVDVADD-----  187 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~~~-------------gl~~id~~g---~~~l~-~~~~g~~~~~~~~l~~d~d-----  187 (393)
                      ..++..|+.|      +|||-|.+.             .|+.+|...   .+.+. ....-.+..+.+++++|..     
T Consensus         3 V~~v~iD~~~------rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~   76 (287)
T PF03022_consen    3 VQRVQIDECG------RLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCD   76 (287)
T ss_dssp             EEEEEE-TTS------EEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-
T ss_pred             ccEEEEcCCC------CEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCc
Confidence            5678999999      999999752             388888765   22221 1111112356789999862     


Q ss_pred             -CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc--------------------CCCcEEEcC--
Q 016199          188 -GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY--------------------FANGVVLSP--  244 (393)
Q Consensus       188 -G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~--------------------~~ngi~~s~--  244 (393)
                       +.+|++|++                 .++|..||..+++...+..+..                    ...|+++++  
T Consensus        77 ~~~aYItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~  139 (287)
T PF03022_consen   77 DGFAYITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS  139 (287)
T ss_dssp             SEEEEEEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred             ceEEEEeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence             579999943                 3579999998887766644311                    134677765  


Q ss_pred             -CCCEEEEEeCCCCeEEEEEec---CCCCc-------ceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCc
Q 016199          245 -DQTHLVYCETSMRRCRKFYIK---GKNAG-------RVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYP  313 (393)
Q Consensus       245 -dg~~l~v~~~~~~ri~~~~~~---g~~~~-------~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~  313 (393)
                       ||+.||+.--...++++...+   .+...       ..+.+- ..++..+|++.|++|++|++....            
T Consensus       140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~------------  206 (287)
T PF03022_consen  140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ------------  206 (287)
T ss_dssp             TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC------------
T ss_pred             CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC------------
Confidence             889999999888889998753   11111       112221 222356899999999999998854            


Q ss_pred             chhhhhhhhhhhhCCCCCCCCCceEEEECCCC-----cEEEEeeCCC-CCccEEEEEe---CCEEEEEecC
Q 016199          314 FIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDG-----KPIAHYYDPE-MSLISSAIKI---GDHLYCGSVH  375 (393)
Q Consensus       314 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-----~~~~~~~d~~-~~~~~~~~~~---~g~Lyigs~~  375 (393)
                                            +.|.+.++++     +.....+|+. ......+..+   +|+||+-+..
T Consensus       207 ----------------------~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  207 ----------------------NAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             ----------------------TEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             ----------------------CeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence                                  5799999988     4444556776 5555555444   5999998643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.97  E-value=5.1e-08  Score=92.37  Aligned_cols=149  Identities=22%  Similarity=0.278  Sum_probs=101.7

Q ss_pred             ccCCCceEEEecCCCEEEEEecC------------CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEE
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCED------------GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMI  148 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~------------g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~  148 (393)
                      ....|.+..++++|+ +|+++..            |.|||+++.+..    .+.+......|+||++++||     +.+|
T Consensus       109 ~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~----~~l~~~~~~~~NGla~SpDg-----~tly  178 (307)
T COG3386         109 PLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGV----VRLLDDDLTIPNGLAFSPDG-----KTLY  178 (307)
T ss_pred             CcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCE----EEeecCcEEecCceEECCCC-----CEEE
Confidence            447788999999997 9988766            469999986543    33333324579999999999     3799


Q ss_pred             EEeCC-CceEEEeCC---c----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199          149 VADAY-KGLLKISGN---S----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF  220 (393)
Q Consensus       149 v~~~~-~gl~~id~~---g----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~  220 (393)
                      ++|+. ..|++++.+   +    ...... ... .-..|+++++|.+|++|++..                ...++|.+|
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~-~~G~PDG~~vDadG~lw~~a~----------------~~g~~v~~~  240 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIGGRRGFVD-FDE-EPGLPDGMAVDADGNLWVAAV----------------WGGGRVVRF  240 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccCCcceEEE-ccC-CCCCCCceEEeCCCCEEEecc----------------cCCceEEEE
Confidence            99986 457887644   3    111111 111 123588999999999997421                122489999


Q ss_pred             eCCCCeEEEEecCccCCCcEEEc-CCCCEEEEEeCCCC
Q 016199          221 DPVTKETKVLVSDLYFANGVVLS-PDQTHLVYCETSMR  257 (393)
Q Consensus       221 d~~t~~~~~~~~~l~~~ngi~~s-~dg~~l~v~~~~~~  257 (393)
                      +|+++.+..+.-....+...+|- ++.+.|||+....+
T Consensus       241 ~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~  278 (307)
T COG3386         241 NPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSG  278 (307)
T ss_pred             CCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCC
Confidence            99966666555444556666654 66789999887653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.90  E-value=1e-07  Score=93.27  Aligned_cols=182  Identities=10%  Similarity=0.162  Sum_probs=110.9

Q ss_pred             ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCC-cEEEEEeCCC--C---eEEEEecCccCCCcEEEcCCCCEE
Q 016199          176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPN-GRLLSFDPVT--K---ETKVLVSDLYFANGVVLSPDQTHL  249 (393)
Q Consensus       176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~-g~l~~~d~~t--~---~~~~~~~~l~~~ngi~~s~dg~~l  249 (393)
                      +..|.+|++|++|+||+++...      |.....+.... ++|++++...  +   +.+.+++++..|+|+++.++|  +
T Consensus        13 ~~~P~~ia~d~~G~l~V~e~~~------y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--l   84 (367)
T TIGR02604        13 LRNPIAVCFDERGRLWVAEGIT------YSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--V   84 (367)
T ss_pred             cCCCceeeECCCCCEEEEeCCc------CCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--E
Confidence            4567799999999999997421      11111111122 3898886532  2   356788899999999999888  8


Q ss_pred             EEEeCCCCeEEEEE-ecCCC--CcceeeeeccCCC-------CCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          250 VYCETSMRRCRKFY-IKGKN--AGRVEKFIETLPG-------LPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       250 ~v~~~~~~ri~~~~-~~g~~--~~~~~~~~~~l~g-------~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      ||++.  .+|++|. .+++.  .++.+++++.++.       .++++++++||+||++.....+....    .|..    
T Consensus        85 yV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~----~~~~----  154 (367)
T TIGR02604        85 YVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT----RPGT----  154 (367)
T ss_pred             EEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec----cCCC----
Confidence            89864  5799884 43331  2255666654432       27789999999999987643211000    0000    


Q ss_pred             hhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEE
Q 016199          320 GMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHL  382 (393)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~  382 (393)
                         +    ........+.+++++++|..++.+...-.+..-.....+|.||++........++
T Consensus       155 ---~----~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i  210 (367)
T TIGR02604       155 ---S----DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDPPLCRV  210 (367)
T ss_pred             ---c----cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCCceeEE
Confidence               0    0000112367999999998888877653222223344568999886544444443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.86  E-value=9.1e-08  Score=94.04  Aligned_cols=143  Identities=11%  Similarity=0.089  Sum_probs=93.0

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC--CCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT--GGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST  164 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~--~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~  164 (393)
                      .+++|.+|. ||+|+.+| +++|+..+++    .-.....  ......+..|..|      +|||+ ++.|++..++.|-
T Consensus       169 aLv~D~~g~-lWvgT~dG-L~~fd~~~gk----alql~s~~~dk~I~al~~d~qg------~LWVG-TdqGv~~~e~~G~  235 (671)
T COG3292         169 ALVFDANGR-LWVGTPDG-LSYFDAGRGK----ALQLASPPLDKAINALIADVQG------RLWVG-TDQGVYLQEAEGW  235 (671)
T ss_pred             eeeeeccCc-EEEecCCc-ceEEccccce----EEEcCCCcchhhHHHHHHHhcC------cEEEE-eccceEEEchhhc
Confidence            378898885 99999887 8999887655    3333221  1234677888899      99999 5799999998881


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec----CccCCCcE
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS----DLYFANGV  240 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~----~l~~~ngi  240 (393)
                       .+.......+...+.-+..|.+|.+||++                  .+ ++.|+......+.....    +....|++
T Consensus       236 -~~sn~~~~lp~~~I~ll~qD~qG~lWiGT------------------en-Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL  295 (671)
T COG3292         236 -RASNWGPMLPSGNILLLVQDAQGELWIGT------------------EN-GLWRTRLPRQGLQIPLSKMHLGVSTVNSL  295 (671)
T ss_pred             -cccccCCCCcchheeeeecccCCCEEEee------------------cc-cceeEecCCCCccccccccCCccccccce
Confidence             11122223333445667788899999994                  23 46766654444333222    23445778


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      ..+.|| .+|+...  +++.+|...
T Consensus       296 ~~D~dG-sLWv~t~--~giv~~~~a  317 (671)
T COG3292         296 WLDTDG-SLWVGTY--GGIVRYLTA  317 (671)
T ss_pred             eeccCC-CEeeecc--CceEEEecc
Confidence            888888 5777543  567777643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.85  E-value=6.5e-06  Score=75.02  Aligned_cols=179  Identities=15%  Similarity=0.187  Sum_probs=116.0

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc-
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS-  163 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g-  163 (393)
                      ..+.+.++++.+++++.+|.|..|+.+.+.   ....+......+..+.+.+++      +++++.. .+.+..++... 
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~  125 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGE---CVRTLTGHTSYVSSVAFSPDG------RILSSSSRDKTIKVWDVETG  125 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCccc---ceEEEeccCCcEEEEEEcCCC------CEEEEecCCCeEEEEECCCc
Confidence            368899988888898889999999987642   133443334467889999888      7777765 55577778653 


Q ss_pred             --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcE
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGV  240 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi  240 (393)
                        ...+.    .. ...+..+.+++++.++++.                 ...+.+..||..+++... +.........+
T Consensus       126 ~~~~~~~----~~-~~~i~~~~~~~~~~~l~~~-----------------~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~  183 (289)
T cd00200         126 KCLTTLR----GH-TDWVNSVAFSPDGTFVASS-----------------SQDGTIKLWDLRTGKCVATLTGHTGEVNSV  183 (289)
T ss_pred             EEEEEec----cC-CCcEEEEEEcCcCCEEEEE-----------------cCCCcEEEEEccccccceeEecCccccceE
Confidence              22221    11 1235678899988776663                 224678889887554332 33233357889


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      +++++++.++++.. .+.+..|++...+  ....+. ........+++++++.++++..
T Consensus       184 ~~~~~~~~l~~~~~-~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         184 AFSPDGEKLLSSSS-DGTIKLWDLSTGK--CLGTLR-GHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EECCCcCEEEEecC-CCcEEEEECCCCc--eecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence            99999977777665 7889999985321  111121 1222356688888877777655

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.84  E-value=7.2e-06  Score=74.70  Aligned_cols=182  Identities=18%  Similarity=0.238  Sum_probs=111.3

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ...+++++++++.+++++.+|.|..|+.+++.   ..............+.+.+++     +.++++...+.+..++.+.
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADG-----TYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCC-----CEEEEEcCCCeEEEEEcCc
Confidence            34568899998888888889999999887653   122222222334588888887     1455554455577777654


Q ss_pred             ---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCc
Q 016199          164 ---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANG  239 (393)
Q Consensus       164 ---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ng  239 (393)
                         ...+.    .. ...+..+.+.+++.++++.                 ...+.+..||..+++...... .......
T Consensus        83 ~~~~~~~~----~~-~~~i~~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~  140 (289)
T cd00200          83 GECVRTLT----GH-TSYVSSVAFSPDGRILSSS-----------------SRDKTIKVWDVETGKCLTTLRGHTDWVNS  140 (289)
T ss_pred             ccceEEEe----cc-CCcEEEEEEcCCCCEEEEe-----------------cCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence               22221    11 1235578888888777764                 235679999987555443332 2334678


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEe
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALA  299 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~  299 (393)
                      ++++++++.++ +....+.|..|++...+  ....+. ...+....+.++++|+ ++++..
T Consensus       141 ~~~~~~~~~l~-~~~~~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         141 VAFSPDGTFVA-SSSQDGTIKLWDLRTGK--CVATLT-GHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             EEEcCcCCEEE-EEcCCCcEEEEEccccc--cceeEe-cCccccceEEECCCcCEEEEecC
Confidence            89999876554 44457889999985322  112222 2222456788899885 444443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.76  E-value=1.1e-06  Score=85.82  Aligned_cols=254  Identities=13%  Similarity=0.107  Sum_probs=137.9

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g  163 (393)
                      +..+++++||+.+|+.+.+|.|..+|+.+.+    +......+..|.++++++||     +.+++++. ...+..+|.++
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----~v~~i~~G~~~~~i~~s~DG-----~~~~v~n~~~~~v~v~D~~t  109 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGK----VVATIKVGGNPRGIAVSPDG-----KYVYVANYEPGTVSVIDAET  109 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSS----EEEEEE-SSEEEEEEE--TT-----TEEEEEEEETTEEEEEETTT
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCccc----EEEEEecCCCcceEEEcCCC-----CEEEEEecCCCceeEecccc
Confidence            4557889999999999999999999998876    44334567889999999999     25777765 45678889776


Q ss_pred             eEEE---eec-cCC-ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-E-EEEecCccC
Q 016199          164 TVLL---TDE-AEG-QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-T-KVLVSDLYF  236 (393)
Q Consensus       164 ~~~l---~~~-~~g-~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~-~~~~~~l~~  236 (393)
                      .+.+   ... ... .+...+.+|..++....|+.+.                ...+.++..|....+ . .....--.+
T Consensus       110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l----------------kd~~~I~vVdy~d~~~~~~~~i~~g~~  173 (369)
T PF02239_consen  110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL----------------KDTGEIWVVDYSDPKNLKVTTIKVGRF  173 (369)
T ss_dssp             --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE----------------TTTTEEEEEETTTSSCEEEEEEE--TT
T ss_pred             ccceeecccccccccccCCCceeEEecCCCCEEEEEE----------------ccCCeEEEEEeccccccceeeeccccc
Confidence            3222   211 111 0112244666667766565431                335688888854332 2 122333467


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCC-CCCeEEECCC-CCEEEEEecCcchhhhhhhcC
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPG-LPDNIRYDGE-GHYLIALATEFSTYWDLAYRY  312 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g-~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~  312 (393)
                      +++..+++|+++++++....+.|..++.+..   .....++.  .|. .|..-..++. |-+|......... ...+.. 
T Consensus       174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~-~~~ig~-  248 (369)
T PF02239_consen  174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA-IPLIGT-  248 (369)
T ss_dssp             EEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE-EEEEE--
T ss_pred             ccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccccCCCcceEEeecccccee-cccccC-
Confidence            8999999999999998888889999997532   22222221  110 1111113444 4467655422100 000000 


Q ss_pred             cchhhhhhhhhhhhCCCCCCCCCceEEEEC-CCCcEEEEeeCCCCCccEEEEEeCCEEEEE---ecCCCeEEEEeCCCCC
Q 016199          313 PFIRKVSGMVVRYLGMPPMGKSSSGVFIVD-LDGKPIAHYYDPEMSLISSAIKIGDHLYCG---SVHHRGILHLDVNQHP  388 (393)
Q Consensus       313 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~d~~~~~~~~~~~~~g~Lyig---s~~~~~i~~~~~~~~~  388 (393)
                                             .-+..++ .+-++++.+.........-..++..+||+.   +-..+.|..+|.+...
T Consensus       249 -----------------------~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~  305 (369)
T PF02239_consen  249 -----------------------DPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK  305 (369)
T ss_dssp             ------------------------TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred             -----------------------CccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence                                   0011123 235677776654433333345666899999   5556899999987765


Q ss_pred             CCC
Q 016199          389 ARA  391 (393)
Q Consensus       389 ~~~  391 (393)
                      .++
T Consensus       306 ~~~  308 (369)
T PF02239_consen  306 VVK  308 (369)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            443

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.75  E-value=2.9e-06  Score=77.92  Aligned_cols=194  Identities=15%  Similarity=0.185  Sum_probs=107.5

Q ss_pred             cCccCCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeC-CCc
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADA-YKG  155 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~-~~g  155 (393)
                      .|....+.+|+++++.+.||+-+ ..+.|+.++.++..    ...+.-. .+.+.||+.-.+|      .+.+.+- .+.
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v----lr~i~l~g~~D~EgI~y~g~~------~~vl~~Er~~~   87 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV----LRRIPLDGFGDYEGITYLGNG------RYVLSEERDQR   87 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E----EEEEE-SS-SSEEEEEE-STT------EEEEEETTTTE
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE----EEEEeCCCCCCceeEEEECCC------EEEEEEcCCCc
Confidence            44445578899999877888665 47789999987553    4444322 3579999999899      8888864 344


Q ss_pred             eEEEeC--Cc--e-----EEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeC--C
Q 016199          156 LLKISG--NS--T-----VLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP--V  223 (393)
Q Consensus       156 l~~id~--~g--~-----~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~--~  223 (393)
                      |+.++.  ++  .     +.+.-...........+|+.|+.+ ++|++-               |.. -.+|+.++.  .
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---------------E~~-P~~l~~~~~~~~  151 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---------------ERK-PKRLYEVNGFPG  151 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---------------ESS-SEEEEEEESTT-
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---------------CCC-ChhhEEEccccC
Confidence            666643  22  1     111111111112235699999964 788773               222 346888775  2


Q ss_pred             CCeEEEEec--------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC------CCCCeEEEC
Q 016199          224 TKETKVLVS--------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP------GLPDNIRYD  289 (393)
Q Consensus       224 t~~~~~~~~--------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~------g~P~~i~~d  289 (393)
                      .........        ...-+.+++++|....+|+-.....+|..++.+|.-... ..+.....      ..|.||++|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~-~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSS-LSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEE-EE-STTGGG-SS---SEEEEEE-
T ss_pred             ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEE-EEeCCcccCcccccCCccEEEEC
Confidence            222222111        134578999999988899998888999999976642111 11111110      258999999


Q ss_pred             CCCCEEEEEe
Q 016199          290 GEGHYLIALA  299 (393)
Q Consensus       290 ~~G~lwva~~  299 (393)
                      ++|++||+.-
T Consensus       231 ~~G~LYIvsE  240 (248)
T PF06977_consen  231 PDGNLYIVSE  240 (248)
T ss_dssp             TT--EEEEET
T ss_pred             CCCCEEEEcC
Confidence            9999999864

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.74  E-value=2.2e-07  Score=91.39  Aligned_cols=194  Identities=13%  Similarity=0.114  Sum_probs=103.4

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC--Cc
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG--NS  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~--~g  163 (393)
                      ++.|-.|+ ||+|+..| +++.++.+..    +..+..  ..+...-+..|.+|      .+||+ +.+|+.+...  .+
T Consensus       211 l~~d~qg~-LWVGTdqG-v~~~e~~G~~----~sn~~~~lp~~~I~ll~qD~qG------~lWiG-TenGl~r~~l~rq~  277 (671)
T COG3292         211 LIADVQGR-LWVGTDQG-VYLQEAEGWR----ASNWGPMLPSGNILLLVQDAQG------ELWIG-TENGLWRTRLPRQG  277 (671)
T ss_pred             HHHHhcCc-EEEEeccc-eEEEchhhcc----ccccCCCCcchheeeeecccCC------CEEEe-ecccceeEecCCCC
Confidence            55666775 99999876 7877776632    222211  12455677788999      99999 4777776643  23


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccc--hhhhee------------------------hhcccCCCcEE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYY--LREYIL------------------------DIFEGKPNGRL  217 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~--~~~~~~------------------------~~~e~~~~g~l  217 (393)
                      .... ..........++++..|.+|.+|+++......  ..+|+.                        .+......|-+
T Consensus       278 Lq~~-~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L  356 (671)
T COG3292         278 LQIP-LSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGEL  356 (671)
T ss_pred             cccc-ccccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceE
Confidence            2111 11122334557889999999999998654322  111111                        00011112223


Q ss_pred             EEEeCCCCeEEEEecCcc--CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-CeEEECCCCCE
Q 016199          218 LSFDPVTKETKVLVSDLY--FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-DNIRYDGEGHY  294 (393)
Q Consensus       218 ~~~d~~t~~~~~~~~~l~--~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-~~i~~d~~G~l  294 (393)
                      ...+..++..-.......  ...-.+++.+| .+|+.. .+++|.+++.+..  +-...-..++|..+ ..|..|+++++
T Consensus       357 ~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs-~q~GLsrl~n~n~--~avlde~agl~ss~V~aived~dnsL  432 (671)
T COG3292         357 MVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS-MQNGLSRLDNKNE--WAVLDEDAGLPSSEVSAIVEDPDNSL  432 (671)
T ss_pred             EEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe-cccchhhhccCCc--ccccccccCCcccceeeeeecCCCCE
Confidence            333444443322111111  12233445555 466654 4668989886431  11111112333211 33667999999


Q ss_pred             EEEEe
Q 016199          295 LIALA  299 (393)
Q Consensus       295 wva~~  299 (393)
                      ||++.
T Consensus       433 WIGTs  437 (671)
T COG3292         433 WIGTS  437 (671)
T ss_pred             EEecc
Confidence            99998

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.73  E-value=2.5e-05  Score=78.28  Aligned_cols=159  Identities=13%  Similarity=0.127  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc--eEEEeeccCCcccccc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS--TVLLTDEAEGQKFKLT  179 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g--~~~l~~~~~g~~~~~~  179 (393)
                      .|+.++.++..    .+.+..........++.+||     +.|......   ..|+.++.++  .+.+. ...+    ..
T Consensus       183 ~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG-----~~lay~s~~~g~~~i~~~dl~~g~~~~l~-~~~g----~~  248 (435)
T PRK05137        183 RLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNR-----QEITYMSYANGRPRVYLLDLETGQRELVG-NFPG----MT  248 (435)
T ss_pred             EEEEECCCCCC----cEEEecCCCCeEeeEECCCC-----CEEEEEEecCCCCEEEEEECCCCcEEEee-cCCC----cc
Confidence            46666655443    33333323345677888998     244443222   3488888765  33332 2222    12


Q ss_pred             ccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--C
Q 016199          180 DGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--M  256 (393)
Q Consensus       180 ~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~  256 (393)
                      ....++|||. |+++...               .+...||.+|.++++.+.+..........+++|||+.++++...  .
T Consensus       249 ~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~  313 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGS  313 (435)
T ss_pred             cCcEECCCCCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCC
Confidence            3567899994 5555211               22356999999988877765544445568899999988776533  3


Q ss_pred             CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          257 RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       257 ~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      ..|+++++++..   .+.+... .+.-.....+++|+..+
T Consensus       314 ~~Iy~~d~~g~~---~~~lt~~-~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        314 PQLYVMNADGSN---PRRISFG-GGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             CeEEEEECCCCC---eEEeecC-CCcccCeEECCCCCEEE
Confidence            478888876532   2222211 22233467888888544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.68  E-value=1.5e-05  Score=80.20  Aligned_cols=174  Identities=10%  Similarity=0.082  Sum_probs=104.0

Q ss_pred             eEEEecCCCEEEEE-ecCC--eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc---eEEEe
Q 016199           87 DLLYDAHSKLIYTG-CEDG--WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG---LLKIS  160 (393)
Q Consensus        87 ~ia~d~~g~~L~~~-~~~g--~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g---l~~id  160 (393)
                      +..++|||+.|+.. ..++  .|+.++..++.    .+.+....+.....++.+||     +.|+++....|   |+.++
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~----~~~lt~~~g~~~~~~wSPDG-----~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV----REKVTSFPGINGAPRFSPDG-----KKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCC----eEEecCCCCCcCCeeECCCC-----CEEEEEEeCCCCeEEEEEE
Confidence            46899999866544 3333  69999988765    44443322333467889998     24655433333   88888


Q ss_pred             CCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          161 GNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      .++  .+.+... .    .......+++|| .|+++...               .+...||++|.++++.+.+.......
T Consensus       293 l~tg~~~~lt~~-~----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~  352 (448)
T PRK04792        293 IATKALTRITRH-R----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQN  352 (448)
T ss_pred             CCCCCeEECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCC
Confidence            765  3333221 1    122356788998 46665311               22347999999888877664333334


Q ss_pred             CcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCE
Q 016199          238 NGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHY  294 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~l  294 (393)
                      .+.+++|||+.++++....+  +|+++++++.   ....+...  .......++++|+.
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g---~~~~lt~~--~~d~~ps~spdG~~  406 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG---AMQVLTST--RLDESPSVAPNGTM  406 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCC---CeEEccCC--CCCCCceECCCCCE
Confidence            45789999999988765443  6788887543   22222211  11223467888873

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.65  E-value=1.6e-05  Score=80.52  Aligned_cols=192  Identities=17%  Similarity=0.205  Sum_probs=132.7

Q ss_pred             cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199           82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS  160 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id  160 (393)
                      ...-.+++++|||+++-+|..||+|..|+...+.   .+.+|........++.|...|      +..++..-.| +..+|
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---C~vTFteHts~Vt~v~f~~~g------~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---CFVTFTEHTSGVTAVQFTARG------NVLLSSSLDGTVRAWD  420 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEEEeccCce---EEEEeccCCCceEEEEEEecC------CEEEEeecCCeEEeee
Confidence            3445679999999989899999999999988654   355666666778999999999      7777766555 55567


Q ss_pred             CCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC-
Q 016199          161 GNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF-  236 (393)
Q Consensus       161 ~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~-  236 (393)
                      ...   .+.+. ...  + .....+++|+.|.+.++-+                ...-.|+.++.+||++--.+.+-.. 
T Consensus       421 lkRYrNfRTft-~P~--p-~QfscvavD~sGelV~AG~----------------~d~F~IfvWS~qTGqllDiLsGHEgP  480 (893)
T KOG0291|consen  421 LKRYRNFRTFT-SPE--P-IQFSCVAVDPSGELVCAGA----------------QDSFEIFVWSVQTGQLLDILSGHEGP  480 (893)
T ss_pred             ecccceeeeec-CCC--c-eeeeEEEEcCCCCEEEeec----------------cceEEEEEEEeecCeeeehhcCCCCc
Confidence            543   22221 111  1 1234789999998877632                1233589999999987766665444 


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhh
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYW  306 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~  306 (393)
                      ..++++++++. ++++.++..+|.+|++-.. .++.|.+.  ...-.-++++.|+|. +-|++..+.-.++
T Consensus       481 Vs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~  547 (893)
T KOG0291|consen  481 VSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFF  547 (893)
T ss_pred             ceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEE
Confidence            47899999996 7788999999999998542 34555543  222234577888887 7788776543333

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.62  E-value=1.1e-05  Score=85.64  Aligned_cols=223  Identities=17%  Similarity=0.214  Sum_probs=133.2

Q ss_pred             ceEEEecCCCEEEEEec-CCeEEEEEcCCCCC-cceeeeee----------cCCC-----------ceeeeEECCCCCCC
Q 016199           86 EDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPA-DSLVHNWI----------NTGG-----------RPLGIAFANSDPDA  142 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~-~~~~~~~~----------~~~~-----------~p~gl~~d~~G~~~  142 (393)
                      ..||++|=...||++.. ..+|+|+.--..+. ..-.+.+.          ..|+           .|.||++|++|   
T Consensus       410 Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g---  486 (1899)
T KOG4659|consen  410 YYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMG---  486 (1899)
T ss_pred             eEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCC---
Confidence            44899995456999876 55788874311110 00022221          1122           38999999999   


Q ss_pred             CceEEEEEeCCCceEEEeCCc-eEEEe-ec--------------cCCccccccccEEEcC-CCcEEEEeCCCccchhhhe
Q 016199          143 DRITMIVADAYKGLLKISGNS-TVLLT-DE--------------AEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       143 ~~~~L~v~~~~~gl~~id~~g-~~~l~-~~--------------~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~  205 (393)
                         .||++| ...|..+|.+| ...+. ..              .....+.+|.+++++| |+.+|+-|           
T Consensus       487 ---~lYfaD-~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld-----------  551 (1899)
T KOG4659|consen  487 ---NLYFAD-GTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD-----------  551 (1899)
T ss_pred             ---cEEEec-ccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee-----------
Confidence               999997 45688889888 43332 11              1123467899999999 78999986           


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEEec---------------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVLVS---------------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~---------------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                              +.-|+++++. ++++..+.                     .+..+..|+++++| .|||+|+...||.|...
T Consensus       552 --------~nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaEsD~rriNrvr~  621 (1899)
T KOG4659|consen  552 --------TNVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAESDGRRINRVRK  621 (1899)
T ss_pred             --------cceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEeccchhhhheEE
Confidence                    3457777765 34433211                     13456789999999 79999998877766543


Q ss_pred             cCCCCcceeeeecc-------------------------CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          265 KGKNAGRVEKFIET-------------------------LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       265 ~g~~~~~~~~~~~~-------------------------l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      -+. .++.-.++..                         .-.-|..+|+.+||.++||..+.           -.+|++.
T Consensus       622 ~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN-----------~rIr~Vs  689 (1899)
T KOG4659|consen  622 LST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN-----------SRIRKVS  689 (1899)
T ss_pred             ecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc-----------hhhhhhh
Confidence            211 1111111100                         00136779999999999997644           2345665


Q ss_pred             hhhhhhhCCCCC---CCCCceEEEECCCCcEE
Q 016199          320 GMVVRYLGMPPM---GKSSSGVFIVDLDGKPI  348 (393)
Q Consensus       320 ~~~~~~~~~~~~---~~~~~~v~~~d~~g~~~  348 (393)
                      ++.|.+-...-+   .....-++.||..|+-.
T Consensus       690 ~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~  721 (1899)
T KOG4659|consen  690 ARMAKYDGSRTYEITDPERQEKYTFNRHGQHS  721 (1899)
T ss_pred             hcccccCCCceeeccCcccceeEEEeccceee
Confidence            555544321111   11223467777776544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.61  E-value=5.2e-05  Score=74.08  Aligned_cols=191  Identities=19%  Similarity=0.196  Sum_probs=125.0

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeC
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADA  152 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~  152 (393)
                      ..+..|..+.-.++++.++++.||.++++|.|..|+...+..    ..+.  .......+|+.+..|      .++.+.+
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~----~~~~g~~h~nqI~~~~~~~~~------~~~t~g~  382 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS----DRLAGKGHTNQIKGMAASESG------ELFTIGW  382 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc----cccccccccceEEEEeecCCC------cEEEEec
Confidence            344466667788899999999999999999999999876652    2221  123456788888878      8888878


Q ss_pred             CCceEEEeCCc---eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          153 YKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       153 ~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      +.-|.+++..+   ...-......    .|-++++.++| .+.++.                   ...|..+.-.++ ..
T Consensus       383 Dd~l~~~~~~~~~~t~~~~~~lg~----QP~~lav~~d~~~avv~~-------------------~~~iv~l~~~~~-~~  438 (603)
T KOG0318|consen  383 DDTLRVISLKDNGYTKSEVVKLGS----QPKGLAVLSDGGTAVVAC-------------------ISDIVLLQDQTK-VS  438 (603)
T ss_pred             CCeEEEEecccCcccccceeecCC----CceeEEEcCCCCEEEEEe-------------------cCcEEEEecCCc-ce
Confidence            88787776532   1111111222    24588999987 444443                   223555543222 22


Q ss_pred             EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199          229 VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       229 ~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r  302 (393)
                      ... -...+.+++++||+..+.|.. ..+.|..|.+.|....+..... ...+-+..++.++||.++.++-..|
T Consensus       439 ~~~-~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~r  509 (603)
T KOG0318|consen  439 SIP-IGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDASR  509 (603)
T ss_pred             eec-cccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccCC
Confidence            221 224578999999998776665 4677999999875322211222 3455577899999999998887653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=2.7e-05  Score=77.98  Aligned_cols=176  Identities=14%  Similarity=0.120  Sum_probs=105.3

Q ss_pred             eEEEecCCCEEEEEec---CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEe
Q 016199           87 DLLYDAHSKLIYTGCE---DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKIS  160 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~---~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id  160 (393)
                      +++++|||+.|+..+.   ...|++++.+++.    ...+....+.....++.++|     +.|++.....   .|+.++
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~----~~~l~~~~g~~~~~~~SpDG-----~~l~~~~s~~g~~~Iy~~d  278 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ----RELVASFRGINGAPSFSPDG-----RRLALTLSRDGNPEIYVMD  278 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCC----EEEeccCCCCccCceECCCC-----CEEEEEEeCCCCceEEEEE
Confidence            4678999986665443   2369999988765    44443323333467889998     2455443322   388888


Q ss_pred             CCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      .++  .+.+... .+    ......+++||. |+++...               .+...||.+|..+++.+.+.......
T Consensus       279 ~~~g~~~~lt~~-~~----~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~  338 (433)
T PRK04922        279 LGSRQLTRLTNH-FG----IDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYN  338 (433)
T ss_pred             CCCCCeEECccC-CC----CccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCc
Confidence            765  3333211 11    123568899995 6665310               12236999998877776654333344


Q ss_pred             CcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          238 NGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      ...+++|||+.++++....  .+|+.+++++.   +...+... . ......+++||+..+
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~-~-~~~~p~~spdG~~i~  394 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPG-S-LDESPSFAPNGSMVL  394 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCC-C-CCCCceECCCCCEEE
Confidence            5689999999998875433  36888887543   22223211 1 233467889998443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=3.9e-05  Score=76.71  Aligned_cols=177  Identities=14%  Similarity=0.137  Sum_probs=105.4

Q ss_pred             eEEEecCCCEEEEEec-C--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEe
Q 016199           87 DLLYDAHSKLIYTGCE-D--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKIS  160 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~-~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id  160 (393)
                      +++|+|||+.|+..+. +  ..|+.++.+++.    ...+....+.....++.+||     +.|+++....   .|+.++
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~----~~~l~~~~g~~~~~~~SPDG-----~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGR----RRVVANFKGSNSAPAWSPDG-----RTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCC----EEEeecCCCCccceEECCCC-----CEEEEEEccCCCceEEEEE
Confidence            4689999987755443 3  359999988765    44443333444578899998     2455543332   388888


Q ss_pred             CCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      .++  .+.+... .+    ......+++||+ |+++...               .+.-.||.++..+++.+.+.......
T Consensus       271 ~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~  330 (427)
T PRK02889        271 ADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYN  330 (427)
T ss_pred             CCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCc
Confidence            765  3333221 11    123567899994 6665310               12346899988777665554322333


Q ss_pred             CcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          238 NGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                      ...+++|||+.++++....  ..|+.+++++.   +...+...  .......+++||+..+.
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~~--~~~~~p~~spdg~~l~~  387 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTDT--TRDESPSFAPNGRYILY  387 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccCC--CCccCceECCCCCEEEE
Confidence            4578999999887765433  36888887543   22222211  12345678899984443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.60  E-value=3.8e-05  Score=70.54  Aligned_cols=189  Identities=14%  Similarity=0.230  Sum_probs=114.6

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCCC-ce--E
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAYK-GL--L  157 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl--~  157 (393)
                      ..-.+++|+|+.+.||+.+. ...|+.++.++.-    +..+.-. ...|.+|..-.+|      .+.+++-.. .+  +
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl----irtiPL~g~~DpE~Ieyig~n------~fvi~dER~~~l~~~  155 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL----IRTIPLTGFSDPETIEYIGGN------QFVIVDERDRALYLF  155 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCce----EEEecccccCChhHeEEecCC------EEEEEehhcceEEEE
Confidence            44567999999999997665 4479999887654    4444322 2468888888777      666666533 34  4


Q ss_pred             EEeCCc-eEEEee---ccC--CccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          158 KISGNS-TVLLTD---EAE--GQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       158 ~id~~g-~~~l~~---~~~--g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                      .+++++ ......   ..+  ......-.|++.|+. +++||+-               |..+ -+||.++........-
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---------------Er~P-~~I~~~~~~~~~l~~~  219 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---------------ERNP-IGIFEVTQSPSSLSVH  219 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---------------ccCC-cEEEEEecCCcccccc
Confidence            456665 211111   111  111223468999995 4899983               3333 3588887543222221


Q ss_pred             ec-----C----ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-------cCCCCCCeEEECCCCCE
Q 016199          231 VS-----D----LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE-------TLPGLPDNIRYDGEGHY  294 (393)
Q Consensus       231 ~~-----~----l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-------~l~g~P~~i~~d~~G~l  294 (393)
                      ..     .    +.-..|+.+++....++|-.-...++..++.+|+-.+.. .+.+       ..| .+.||+.|.+|++
T Consensus       220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l-sL~~g~~gL~~dip-qaEGiamDd~g~l  297 (316)
T COG3204         220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL-SLTKGNHGLSSDIP-QAEGIAMDDDGNL  297 (316)
T ss_pred             cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeE-EeccCCCCCcccCC-CcceeEECCCCCE
Confidence            11     0    122456777766667777766678888999877631111 1111       233 4789999999999


Q ss_pred             EEEEe
Q 016199          295 LIALA  299 (393)
Q Consensus       295 wva~~  299 (393)
                      ||..-
T Consensus       298 YIvSE  302 (316)
T COG3204         298 YIVSE  302 (316)
T ss_pred             EEEec
Confidence            99765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=0.00027  Score=65.17  Aligned_cols=243  Identities=13%  Similarity=0.134  Sum_probs=145.4

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC--CCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA--YKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~--~~gl~~id  160 (393)
                      .-++++.++++|..|.+++.+..+..|+...+.   .+..+....-++.-++|....     +.+.-+..  ..-|..++
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~-----~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHS-----NTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCc---eeeEeecccccccEEEEecCC-----ceEEEccCCCCCceEEEE
Confidence            446789999999988888888888888876554   134443332345555555433     03333322  12244444


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                      ....+.+ ..+.|.. ..++.|.+.|-+..+++.                 +....|.-||....+...+.. +..+...
T Consensus        87 l~dNkyl-RYF~GH~-~~V~sL~~sP~~d~FlS~-----------------S~D~tvrLWDlR~~~cqg~l~-~~~~pi~  146 (311)
T KOG1446|consen   87 LHDNKYL-RYFPGHK-KRVNSLSVSPKDDTFLSS-----------------SLDKTVRLWDLRVKKCQGLLN-LSGRPIA  146 (311)
T ss_pred             eecCceE-EEcCCCC-ceEEEEEecCCCCeEEec-----------------ccCCeEEeeEecCCCCceEEe-cCCCcce
Confidence            3221111 1234443 347889999988888874                 334567788877665554443 3445668


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCC--CCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhh
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGL--PDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRK  317 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~--P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~  317 (393)
                      |++|+| .++.....+..|..||+..-..+....|.-+.+..  -.++.++++|+ +.+++..                 
T Consensus       147 AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-----------------  208 (311)
T KOG1446|consen  147 AFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-----------------  208 (311)
T ss_pred             eECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-----------------
Confidence            899999 56666666669999998643345555554221212  24588999999 4566553                 


Q ss_pred             hhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC----CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCC
Q 016199          318 VSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE----MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPAR  390 (393)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~----~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~  390 (393)
                                        +-+..+|. +|.+...+....    .. .......++...+++.....|...+++....+
T Consensus       209 ------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  209 ------------------SFIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             ------------------CcEEEEEccCCcEeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence                              23666775 888888877533    22 23333355666666666677777777554443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.59  E-value=1.5e-05  Score=84.72  Aligned_cols=185  Identities=19%  Similarity=0.324  Sum_probs=121.7

Q ss_pred             ccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCC----CceeeeEECC-CCCCCCceEEEEEeCC-C
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG----GRPLGIAFAN-SDPDADRITMIVADAY-K  154 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~----~~p~gl~~d~-~G~~~~~~~L~v~~~~-~  154 (393)
                      .+..|-.+|..+||. ||+|+.+- |.|+.+++.     +..+...+    ..-..|+++| +|      .|||.+.. .
T Consensus       363 ~L~aPvala~a~DGS-l~VGDfNy-IRRI~~dg~-----v~tIl~L~~t~~sh~Yy~AvsPvdg------tlyvSdp~s~  429 (1899)
T KOG4659|consen  363 SLFAPVALAYAPDGS-LIVGDFNY-IRRISQDGQ-----VSTILTLGLTDTSHSYYIAVSPVDG------TLYVSDPLSK  429 (1899)
T ss_pred             eeeceeeEEEcCCCc-EEEccchh-eeeecCCCc-----eEEEEEecCCCccceeEEEecCcCc------eEEecCCCcc
Confidence            457799999999997 99998774 888887765     34333322    2346899998 88      99999874 4


Q ss_pred             ceEEEe---C---Cc-eEEEe---------eccC-------CccccccccEEEcCCCcEEEEeCCCccchhhheehhccc
Q 016199          155 GLLKIS---G---NS-TVLLT---------DEAE-------GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEG  211 (393)
Q Consensus       155 gl~~id---~---~g-~~~l~---------~~~~-------g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~  211 (393)
                      .|+++.   +   .+ .++++         ++..       ...+.+|.||++|++|.|||+|..               
T Consensus       430 qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t---------------  494 (1899)
T KOG4659|consen  430 QVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT---------------  494 (1899)
T ss_pred             eEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc---------------
Confidence            588873   1   11 23332         1111       123678999999999999999843               


Q ss_pred             CCCcEEEEEeCCCCeEEEEec--------------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC---
Q 016199          212 KPNGRLLSFDPVTKETKVLVS--------------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN---  268 (393)
Q Consensus       212 ~~~g~l~~~d~~t~~~~~~~~--------------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~---  268 (393)
                          +|..+|.. +-++.+..                    .+.+|..++++|=...|||.++  +-|++++..+.-   
T Consensus       495 ----~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii  567 (1899)
T KOG4659|consen  495 ----RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRII  567 (1899)
T ss_pred             ----EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEE
Confidence                34555543 33333211                    2678999999997668999886  667777754320   


Q ss_pred             CcceeeeeccCC---------------CCCCeEEECCCCCEEEEEecCc
Q 016199          269 AGRVEKFIETLP---------------GLPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       269 ~~~~~~~~~~l~---------------g~P~~i~~d~~G~lwva~~~~r  302 (393)
                      .|... .. .++               -.+..|++..+|-+||+...+|
T Consensus       568 ~GrP~-hC-~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r  614 (1899)
T KOG4659|consen  568 LGRPT-HC-DLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR  614 (1899)
T ss_pred             cCCcc-cc-ccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence            11110 00 111               1367899999999999988764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=0.00016  Score=72.36  Aligned_cols=140  Identities=11%  Similarity=0.122  Sum_probs=82.9

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchh
Q 016199          129 RPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLR  202 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~  202 (393)
                      .....++.+||     +.|.+....   ..|+.++.++  .+.+. ...+    ....+.++||| .|+++...      
T Consensus       200 ~~~~p~wSPDG-----~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~----~~~~~~~SPDG~~La~~~~~------  263 (429)
T PRK03629        200 PLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAVRQVA-SFPR----HNGAPAFSPDGSKLAFALSK------  263 (429)
T ss_pred             ceeeeEEcCCC-----CEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCC----CcCCeEECCCCCEEEEEEcC------
Confidence            34578889998     234333222   2477777654  33332 2222    12357899999 46665311      


Q ss_pred             hheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCC
Q 016199          203 EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLP  280 (393)
Q Consensus       203 ~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~  280 (393)
                               .+...|+.+|.++++.+.+...-......+++|||+.|+++...  ...|+++++++.   ..+.+. ...
T Consensus       264 ---------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~~~~lt-~~~  330 (429)
T PRK03629        264 ---------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---APQRIT-WEG  330 (429)
T ss_pred             ---------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---CeEEee-cCC
Confidence                     22336999999988887776554455678999999977655432  237888887543   222232 112


Q ss_pred             CCCCeEEECCCCCEEEE
Q 016199          281 GLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       281 g~P~~i~~d~~G~lwva  297 (393)
                      +.....++++||+..+.
T Consensus       331 ~~~~~~~~SpDG~~Ia~  347 (429)
T PRK03629        331 SQNQDADVSSDGKFMVM  347 (429)
T ss_pred             CCccCEEECCCCCEEEE
Confidence            22345778899985543

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.56  E-value=2.6e-06  Score=86.79  Aligned_cols=186  Identities=18%  Similarity=0.210  Sum_probs=125.7

Q ss_pred             CCCceEEEecCCCEEEEEecCC-eEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCC-CceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDG-WIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAY-KGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g-~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~i  159 (393)
                      .-|-+|.||-..+.+|+.+..| .|.+-.+++.+    .+.+.+. -..|.||++|.-+     +++|.+|+- ..|-.-
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~E----p~ti~n~~L~SPEGiAVDh~~-----Rn~ywtDS~lD~IevA 1095 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAE----PETIVNSGLISPEGIAVDHIR-----RNMYWTDSVLDKIEVA 1095 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCC----CceeecccCCCccceeeeecc-----ceeeeeccccchhhee
Confidence            3466688888777777766544 67777777655    4555442 3579999999877     378888763 334444


Q ss_pred             eCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCcc
Q 016199          160 SGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLY  235 (393)
Q Consensus       160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~  235 (393)
                      ..+|  .++|...  +  +-.+.+|++|+ .|+||.+|.-.               .+-.|-+-+++++.-+.+ .+++.
T Consensus      1096 ~LdG~~rkvLf~t--d--LVNPR~iv~D~~rgnLYwtDWnR---------------enPkIets~mDG~NrRilin~Dig 1156 (1289)
T KOG1214|consen 1096 LLDGSERKVLFYT--D--LVNPRAIVVDPIRGNLYWTDWNR---------------ENPKIETSSMDGENRRILINTDIG 1156 (1289)
T ss_pred             ecCCceeeEEEee--c--ccCcceEEeecccCceeeccccc---------------cCCcceeeccCCccceEEeecccC
Confidence            4556  3444321  1  23467899998 67999997322               122355666665544444 56799


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      .|||+.|+|..+.|-|.+.++.|+.....+|.  ++..++ .+|. +|-+|.-+.+. +|...|..
T Consensus      1157 LPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~-~~Lq-YPF~itsy~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1157 LPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQ-NNLQ-YPFSITSYADH-FYHTDWKR 1217 (1289)
T ss_pred             CCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhh-hccc-Cceeeeecccc-ceeecccc
Confidence            99999999999999999999999999887653  444333 3554 78888877666 77766643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=7.5e-05  Score=74.68  Aligned_cols=177  Identities=15%  Similarity=0.121  Sum_probs=106.4

Q ss_pred             ceEEEecCCCEE-EEEecC--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEE
Q 016199           86 EDLLYDAHSKLI-YTGCED--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKI  159 (393)
Q Consensus        86 e~ia~d~~g~~L-~~~~~~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~i  159 (393)
                      .+..++|||+.| |++..+  ..|+.++.+++.    .+.+....+.....++.++|     +.|++.....   .|+.+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~----~~~l~~~~g~~~~~~~SpDG-----~~la~~~~~~g~~~Iy~~  272 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR----REQITNFEGLNGAPAWSPDG-----SKLAFVLSKDGNPEIYVM  272 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC----EEEccCCCCCcCCeEECCCC-----CEEEEEEccCCCceEEEE
Confidence            456899999866 454443  369999988765    44443333334467889998     2455443332   38888


Q ss_pred             eCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199          160 SGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF  236 (393)
Q Consensus       160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~  236 (393)
                      |.++  .+.+... .+    ......+++|| .|+++...               .+...||++|..+++.+.+......
T Consensus       273 d~~~~~~~~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~  332 (430)
T PRK00178        273 DLASRQLSRVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNY  332 (430)
T ss_pred             ECCCCCeEEcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCC
Confidence            8766  3334321 11    12345788898 47776311               2234799999888877665433233


Q ss_pred             CCcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          237 ANGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      .....++|||+.++++....+  .|+.+++++.   +.+.+.+.  +......++++|+..+
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~~--~~~~~p~~spdg~~i~  389 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTDT--SLDESPSVAPNGTMLI  389 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCCC---CEEEccCC--CCCCCceECCCCCEEE
Confidence            345689999999988875433  5888887543   23333211  1223457888988443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.55  E-value=8.1e-05  Score=72.83  Aligned_cols=174  Identities=20%  Similarity=0.267  Sum_probs=101.3

Q ss_pred             CEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCce-eeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccC
Q 016199           95 KLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAE  172 (393)
Q Consensus        95 ~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~  172 (393)
                      +.+|+... ++.|..+|.++.+    +......++.+ .++++.+||     +.+|+++..+.|..+|....+.+..-..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~----~~~~i~~~~~~h~~~~~s~Dg-----r~~yv~~rdg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNK----VVARIPTGGAPHAGLKFSPDG-----RYLYVANRDGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-S----EEEEEE-STTEEEEEE-TT-S-----SEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred             cEEEEEecCCCEEEEEECCCCe----EEEEEcCCCCceeEEEecCCC-----CEEEEEcCCCeEEEEECCcccEEEEEec
Confidence            45556554 7889999987755    33333334454 457889998     3699997767788999866223322222


Q ss_pred             CccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecC-------ccCCCcEEEc
Q 016199          173 GQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSD-------LYFANGVVLS  243 (393)
Q Consensus       173 g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~-------l~~~ngi~~s  243 (393)
                      |   ..+.++++++||+ +|+++                 ...+.+-.+|.++.+... +...       -....+|..+
T Consensus        77 G---~~~~~i~~s~DG~~~~v~n-----------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   77 G---GNPRGIAVSPDGKYVYVAN-----------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             S---SEEEEEEE--TTTEEEEEE-----------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             C---CCcceEEEcCCCCEEEEEe-----------------cCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence            2   2356899999995 66675                 234578899987765432 2111       1233567677


Q ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      +.+...+++-...++|+..+....+.-.. ... ....+|.+..+|++|+++++..
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccce-eee-cccccccccccCcccceeeecc
Confidence            88776777777789999999764321111 122 2334788899999999775543

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=0.00017  Score=72.65  Aligned_cols=139  Identities=10%  Similarity=0.087  Sum_probs=82.0

Q ss_pred             eeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhh
Q 016199          130 PLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLRE  203 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~  203 (393)
                      .....+++||     +.|++.....   .|+.+|.++  .+.+. ...+.    .....++|||+ |+++...       
T Consensus       220 ~~~p~wSPDG-----~~La~~s~~~g~~~L~~~dl~tg~~~~lt-~~~g~----~~~~~wSPDG~~La~~~~~-------  282 (448)
T PRK04792        220 LMSPAWSPDG-----RKLAYVSFENRKAEIFVQDIYTQVREKVT-SFPGI----NGAPRFSPDGKKLALVLSK-------  282 (448)
T ss_pred             ccCceECCCC-----CEEEEEEecCCCcEEEEEECCCCCeEEec-CCCCC----cCCeeECCCCCEEEEEEeC-------
Confidence            3567888888     2454432222   388888765  33332 22221    23568899995 6665211       


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCC
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPG  281 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g  281 (393)
                              .+...||.+|.++++.+.+..........++++||+.++++...  ...|+++++++.   +.+.+... ..
T Consensus       283 --------~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---~~~~Lt~~-g~  350 (448)
T PRK04792        283 --------DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---KVSRLTFE-GE  350 (448)
T ss_pred             --------CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEEecC-CC
Confidence                    22346999999988877765544445667899999988776543  346888887543   22222211 11


Q ss_pred             CCCeEEECCCCCEEEE
Q 016199          282 LPDNIRYDGEGHYLIA  297 (393)
Q Consensus       282 ~P~~i~~d~~G~lwva  297 (393)
                      ...+.++++||+..+-
T Consensus       351 ~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        351 QNLGGSITPDGRSMIM  366 (448)
T ss_pred             CCcCeeECCCCCEEEE
Confidence            2234578889985443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=0.00013  Score=73.18  Aligned_cols=138  Identities=11%  Similarity=0.132  Sum_probs=82.0

Q ss_pred             eeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhh
Q 016199          130 PLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLRE  203 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~  203 (393)
                      ....++.++|     +.|+.+....   .|+.++.++  .+.+. ...+.    .....+++||. |+++...       
T Consensus       206 v~~p~wSpDg-----~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~g~----~~~~~~SpDG~~l~~~~s~-------  268 (433)
T PRK04922        206 ILSPAWSPDG-----KKLAYVSFERGRSAIYVQDLATGQRELVA-SFRGI----NGAPSFSPDGRRLALTLSR-------  268 (433)
T ss_pred             cccccCCCCC-----CEEEEEecCCCCcEEEEEECCCCCEEEec-cCCCC----ccCceECCCCCEEEEEEeC-------
Confidence            4566778888     2455543322   388888765  33332 22221    23568999994 6665211       


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCC
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPG  281 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g  281 (393)
                              .+...||.+|..+++.+.+..........++++||+.++++....  ..|+.+++++.   +.+.+. ....
T Consensus       269 --------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~~~~lt-~~g~  336 (433)
T PRK04922        269 --------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---SAERLT-FQGN  336 (433)
T ss_pred             --------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEee-cCCC
Confidence                    223469999999888776655433445688999999887765333  35888887543   222222 1122


Q ss_pred             CCCeEEECCCCCEEE
Q 016199          282 LPDNIRYDGEGHYLI  296 (393)
Q Consensus       282 ~P~~i~~d~~G~lwv  296 (393)
                      .....+++++|+..+
T Consensus       337 ~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        337 YNARASVSPDGKKIA  351 (433)
T ss_pred             CccCEEECCCCCEEE
Confidence            334578899998543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=8.2e-05  Score=74.59  Aligned_cols=176  Identities=12%  Similarity=0.090  Sum_probs=108.0

Q ss_pred             ceEEEecCCCEEE-EEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEE
Q 016199           86 EDLLYDAHSKLIY-TGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKI  159 (393)
Q Consensus        86 e~ia~d~~g~~L~-~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~i  159 (393)
                      .+++|+|||+.|. ++..  +..|+.++..++.    ...+....+.....++.+||     +.|++....   ..|+.+
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~~SPDG-----~~la~~~~~~g~~~Iy~~  275 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPRFSPDG-----RKVVMSLSQGGNTDIYTM  275 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcEECCCC-----CEEEEEEecCCCceEEEE
Confidence            3477999998654 4433  3479999988765    44444333444677889999     245444332   238888


Q ss_pred             eCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199          160 SGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF  236 (393)
Q Consensus       160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~  236 (393)
                      |.++  ...+... .+    ......+++||+ |+|+...               .+...||.+|..+++.+.+......
T Consensus       276 d~~~~~~~~Lt~~-~~----~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~  335 (435)
T PRK05137        276 DLRSGTTTRLTDS-PA----IDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGR  335 (435)
T ss_pred             ECCCCceEEccCC-CC----ccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCc
Confidence            8765  3334221 11    123467889994 6665311               2234699999988877766544333


Q ss_pred             CCcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE
Q 016199          237 ANGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL  295 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw  295 (393)
                      .....++|||+.++++....  .+|+.+++++..   ...+. . ........+++||+..
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt-~-~~~~~~p~~spDG~~i  391 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILT-S-GFLVEGPTWAPNGRVI  391 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEecc-C-CCCCCCCeECCCCCEE
Confidence            45578999999988876433  478888875432   22222 1 1124567889999844

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=9e-05  Score=74.15  Aligned_cols=179  Identities=12%  Similarity=0.053  Sum_probs=107.6

Q ss_pred             eEEEecCCCEEE-EEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEe
Q 016199           87 DLLYDAHSKLIY-TGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKIS  160 (393)
Q Consensus        87 ~ia~d~~g~~L~-~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id  160 (393)
                      +++++|||+.|. +...  ...|+.++.++++    .+.+....+.....++.+||     +.|++.....   .|+.+|
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~----~~~l~~~~~~~~~~~~SPDG-----~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDG-----SKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCC----eEEccCCCCCcCCeEECCCC-----CEEEEEEcCCCCcEEEEEE
Confidence            578999998654 4333  3368888887765    44433323334467899999     2455543322   388888


Q ss_pred             CCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      .++  .+.+...   .  .......++|||+ |+++...               ...-.||.+|.++++.+.+.......
T Consensus       274 ~~tg~~~~lt~~---~--~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~  333 (429)
T PRK03629        274 LASGQIRQVTDG---R--SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQN  333 (429)
T ss_pred             CCCCCEEEccCC---C--CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCc
Confidence            765  4444221   1  1234678899995 6555311               12236999999888777665443445


Q ss_pred             CcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          238 NGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ...+++|||+.++++....  ..|+.+++++.   ..+.+.+.  ..-....+++||+..+...
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g---~~~~Lt~~--~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLTDT--FLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCC---CeEEeCCC--CCCCCceECCCCCEEEEEE
Confidence            5688999999887765433  45788887543   23333211  1123467889998554433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.52  E-value=7.7e-05  Score=66.70  Aligned_cols=188  Identities=16%  Similarity=0.197  Sum_probs=119.2

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      +|....-..+.|..+|+.+|+|+.||.+..|+.....   ....+.. ....+.+...++.     -.|+++|..+.|..
T Consensus        80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~---~qR~~~~-~spVn~vvlhpnQ-----teLis~dqsg~irv  150 (311)
T KOG0315|consen   80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS---CQRNYQH-NSPVNTVVLHPNQ-----TELISGDQSGNIRV  150 (311)
T ss_pred             eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc---cchhccC-CCCcceEEecCCc-----ceEEeecCCCcEEE
Confidence            3433455668899999999999999988888877533   1222222 2445778888753     17999988788888


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe----
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV----  231 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~----  231 (393)
                      .|...   .+.+..+.+    .++..+.+++||.+.++-                 ...|+.|.++.-++......    
T Consensus       151 WDl~~~~c~~~liPe~~----~~i~sl~v~~dgsml~a~-----------------nnkG~cyvW~l~~~~~~s~l~P~~  209 (311)
T KOG0315|consen  151 WDLGENSCTHELIPEDD----TSIQSLTVMPDGSMLAAA-----------------NNKGNCYVWRLLNHQTASELEPVH  209 (311)
T ss_pred             EEccCCccccccCCCCC----cceeeEEEcCCCcEEEEe-----------------cCCccEEEEEccCCCccccceEhh
Confidence            88643   334432222    456789999999888774                 45678888887554322111    


Q ss_pred             ---cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          232 ---SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       232 ---~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                         ....+.--..+|||+++| .+.+....+..|+.++.  -..|...+...+.--+-+++.||.|.|...
T Consensus       210 k~~ah~~~il~C~lSPd~k~l-at~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTas  277 (311)
T KOG0315|consen  210 KFQAHNGHILRCLLSPDVKYL-ATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTAS  277 (311)
T ss_pred             heecccceEEEEEECCCCcEE-EeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecC
Confidence               112233345689999765 55556778888887653  122333322222333467889999888655

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.50  E-value=1.8e-05  Score=78.64  Aligned_cols=179  Identities=16%  Similarity=0.180  Sum_probs=107.2

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceee---eeec--CCCceeeeEECCCCC-CCCceE
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVH---NWIN--TGGRPLGIAFANSDP-DADRIT  146 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~---~~~~--~~~~p~gl~~d~~G~-~~~~~~  146 (393)
                      .+.+.+| +..|.+|++.+||+ +|+..+ .|+|++++.+++... .+.   .+..  ..+.+++|+++++=- ....+.
T Consensus        22 ~~~va~G-L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~   98 (454)
T TIGR03606        22 KKVLLSG-LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY   98 (454)
T ss_pred             EEEEECC-CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence            4556565 79999999999995 888888 599999987654310 011   1111  235689999985410 011126


Q ss_pred             EEEEeC----------CCceEEEeCC--c-----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccch------hh
Q 016199          147 MIVADA----------YKGLLKISGN--S-----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYL------RE  203 (393)
Q Consensus       147 L~v~~~----------~~gl~~id~~--g-----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~------~~  203 (393)
                      ||++-+          ...|.++..+  +     .+.+..........+-..|++++||.|||+........      ..
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence            888842          2346666432  1     12222222211123345689999999999754332100      00


Q ss_pred             hee------hh---cccCCCcEEEEEeCCCC-----------eEEEEecCccCCCcEEEcCCCCEEEEEeCCC
Q 016199          204 YIL------DI---FEGKPNGRLLSFDPVTK-----------ETKVLVSDLYFANGVVLSPDQTHLVYCETSM  256 (393)
Q Consensus       204 ~~~------~~---~e~~~~g~l~~~d~~t~-----------~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~  256 (393)
                      -..      ..   ......|.|+|+|+++.           ..+.++.++..|.|++++|+| .||++|-+.
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G-~Lw~~e~Gp  250 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDG-TLYASEQGP  250 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCC-CEEEEecCC
Confidence            000      00   01134678999998753           135677788999999999977 699998664

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=0.00029  Score=70.48  Aligned_cols=138  Identities=9%  Similarity=0.115  Sum_probs=79.3

Q ss_pred             eeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhh
Q 016199          130 PLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLRE  203 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~  203 (393)
                      ....++.+||     +.|+++....   .|+.+|.++  ...+. ...+.    ....+++||| .|+++..        
T Consensus       198 v~~p~wSPDG-----~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~~g~----~~~~~~SPDG~~la~~~~--------  259 (427)
T PRK02889        198 IISPAWSPDG-----TKLAYVSFESKKPVVYVHDLATGRRRVVA-NFKGS----NSAPAWSPDGRTLAVALS--------  259 (427)
T ss_pred             cccceEcCCC-----CEEEEEEccCCCcEEEEEECCCCCEEEee-cCCCC----ccceEECCCCCEEEEEEc--------
Confidence            4567888888     2454443322   388888765  33332 22221    2367899999 4666521        


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCC
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPG  281 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g  281 (393)
                             ..+.-.||.+|.+++..+.+..........++++||+.++++...  ...|+.+++++.   ..+.+. ...+
T Consensus       260 -------~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---~~~~lt-~~g~  328 (427)
T PRK02889        260 -------RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---AAQRVT-FTGS  328 (427)
T ss_pred             -------cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---ceEEEe-cCCC
Confidence                   123346999998877766665433334567899999988765432  336777776542   222222 1112


Q ss_pred             CCCeEEECCCCCEEE
Q 016199          282 LPDNIRYDGEGHYLI  296 (393)
Q Consensus       282 ~P~~i~~d~~G~lwv  296 (393)
                      ......++++|++.+
T Consensus       329 ~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        329 YNTSPRISPDGKLLA  343 (427)
T ss_pred             CcCceEECCCCCEEE
Confidence            223467888998443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=0.00047  Score=68.95  Aligned_cols=138  Identities=13%  Similarity=0.157  Sum_probs=80.5

Q ss_pred             eeeeEECCCCCCCCceEE-EEEeCC--CceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhh
Q 016199          130 PLGIAFANSDPDADRITM-IVADAY--KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLRE  203 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L-~v~~~~--~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~  203 (393)
                      .....+.++|     +.| |+....  ..|+.++.++  .+.+. ...+.    .....++||| .|+++...       
T Consensus       201 ~~~p~wSpDG-----~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g~----~~~~~~SpDG~~la~~~~~-------  263 (430)
T PRK00178        201 ILSPRWSPDG-----KRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEGL----NGAPAWSPDGSKLAFVLSK-------  263 (430)
T ss_pred             eeeeeECCCC-----CEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCCC----cCCeEECCCCCEEEEEEcc-------
Confidence            4667888888     245 333222  2388888765  33332 22221    2356889999 46665311       


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCC
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPG  281 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g  281 (393)
                              .+...||.+|.++++.+.+...........+++||+.++++...  ...|+++++++.+   .+.+... ..
T Consensus       264 --------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt~~-~~  331 (430)
T PRK00178        264 --------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVTFV-GN  331 (430)
T ss_pred             --------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecC-CC
Confidence                    12346999999988877665543344567899999988776533  3478888875432   2222211 11


Q ss_pred             CCCeEEECCCCCEEE
Q 016199          282 LPDNIRYDGEGHYLI  296 (393)
Q Consensus       282 ~P~~i~~d~~G~lwv  296 (393)
                      ......++++|+..+
T Consensus       332 ~~~~~~~Spdg~~i~  346 (430)
T PRK00178        332 YNARPRLSADGKTLV  346 (430)
T ss_pred             CccceEECCCCCEEE
Confidence            223456788888433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=0.00025  Score=70.68  Aligned_cols=198  Identities=11%  Similarity=0.072  Sum_probs=119.8

Q ss_pred             eEEEecCCCE-EEEEec---CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEE
Q 016199           87 DLLYDAHSKL-IYTGCE---DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKI  159 (393)
Q Consensus        87 ~ia~d~~g~~-L~~~~~---~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~i  159 (393)
                      ...|+|||+. +|..+.   ...|+.++..++.    .+.+....+......+.+||     ++|.+....   ..|+.+
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~----~~~lt~~~g~~~~~~~SPDG-----~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK----KEKIASSQGMLVVSDVSKDG-----SKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCc----EEEEecCCCcEEeeEECCCC-----CEEEEEEccCCCcEEEEE
Confidence            3678999984 664433   2469999998776    55554433434456688888     245544332   348888


Q ss_pred             eCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199          160 SGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF  236 (393)
Q Consensus       160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~  236 (393)
                      +.++  .+.+... .+.    ...-.++||| .|+|+...               .+.-.||++|.++++.+.+......
T Consensus       263 dl~~g~~~~LT~~-~~~----d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~~  322 (419)
T PRK04043        263 DTNTKTLTQITNY-PGI----DVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGKN  322 (419)
T ss_pred             ECCCCcEEEcccC-CCc----cCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCCc
Confidence            8765  4444321 111    1133688999 68887421               2234799999998888665432211


Q ss_pred             CCcEEEcCCCCEEEEEeCCC--------CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhh
Q 016199          237 ANGVVLSPDQTHLVYCETSM--------RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWD  307 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~--------~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~  307 (393)
                       + ..++|||+.+.++....        ..|+.+++++.   ..+.+...  +.-....+++||+ +.++.....     
T Consensus       323 -~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~-----  390 (419)
T PRK04043        323 -N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN-----  390 (419)
T ss_pred             -C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCCC--CCcCCeEECCCCCEEEEEEccCC-----
Confidence             2 48999999887776543        47888887643   23333221  1222367889998 444443221     


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEee
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYY  352 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  352 (393)
                                                 ...+..++.+|+....+.
T Consensus       391 ---------------------------~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        391 ---------------------------QSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             ---------------------------cEEEEEEecCCCeeEEee
Confidence                                       135888898998766664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.41  E-value=0.00026  Score=70.24  Aligned_cols=175  Identities=14%  Similarity=0.127  Sum_probs=105.5

Q ss_pred             eEEEecCCCEEEEEec-C--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEe
Q 016199           87 DLLYDAHSKLIYTGCE-D--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKIS  160 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~-~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id  160 (393)
                      ++++++||+.|++... +  ..|+.++..++.    ........+.....++.++|     +.|++.....   .|+.++
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~----~~~~~~~~~~~~~~~~spDg-----~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ----REKVASFPGMNGAPAFSPDG-----SKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEeecCCCCccceEECCCC-----CEEEEEECCCCCccEEEEE
Confidence            3568899987765543 2  369999987764    44443333445568899988     2466553322   388888


Q ss_pred             CCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      .++  .+.+... .+    ......+.+||. |+++...               .+...||.+|..+++.+.+.......
T Consensus       265 ~~~~~~~~l~~~-~~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~  324 (417)
T TIGR02800       265 LDGKQLTRLTNG-PG----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYN  324 (417)
T ss_pred             CCCCCEEECCCC-CC----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCc
Confidence            765  3333211 11    112446778884 6555311               12347999999888776665444556


Q ss_pred             CcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE
Q 016199          238 NGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL  295 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw  295 (393)
                      ...++++||+.++++....  .+|+.+++.+.   ..+.+..  ........+.++|+..
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l  379 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMI  379 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEE
Confidence            6788999999888877543  37888887542   2222221  1123345678888733

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.40  E-value=0.0004  Score=67.01  Aligned_cols=199  Identities=16%  Similarity=0.135  Sum_probs=114.2

Q ss_pred             CCCceEEEecCCCEEEEEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE--E
Q 016199           83 KGPEDLLYDAHSKLIYTGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL--K  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~--~  158 (393)
                      ..|+.+++++||+.||+...  +..|-.+|...++    +..-...++.+......+++      +...| .++...  .
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k----vv~ei~vp~~~~vy~t~e~~------~~~~~-~Dg~~~~v~  173 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA----FVRMMDVPDCYHIFPTANDT------FFMHC-RDGSLAKVG  173 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCc----EEEEEeCCCCcEEEEecCCc------cEEEe-ecCceEEEE
Confidence            44558999999999999874  5689999988776    44433444444555554444      44333 223333  3


Q ss_pred             EeCCc-eEEEeecc-CC--cc-ccccccEEEcC-CCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE--
Q 016199          159 ISGNS-TVLLTDEA-EG--QK-FKLTDGVDVAD-DGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV--  229 (393)
Q Consensus       159 id~~g-~~~l~~~~-~g--~~-~~~~~~l~~d~-dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~--  229 (393)
                      ++.+| ...-.... .+  .+ +..+   .+.+ +|. +|++.                   .|.|+.+|..+.....  
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~-------------------eG~V~~id~~~~~~~~~~  231 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTY-------------------TGKIFQIDLSSGDAKFLP  231 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEec-------------------CCeEEEEecCCCcceecc
Confidence            34444 11111111 11  11 1222   2233 664 55552                   3789999954332221  


Q ss_pred             ----Eec----CccCCCc---EEEcCCCCEEEEEe---------CCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC
Q 016199          230 ----LVS----DLYFANG---VVLSPDQTHLVYCE---------TSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD  289 (393)
Q Consensus       230 ----~~~----~l~~~ng---i~~s~dg~~l~v~~---------~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d  289 (393)
                          +..    .-..|-|   +++++|++.+||..         ...+.|+.+|...   ++....+ .....|.+++++
T Consensus       232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---~kvi~~i-~vG~~~~~iavS  307 (352)
T TIGR02658       232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---GKRLRKI-ELGHEIDSINVS  307 (352)
T ss_pred             eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC---CeEEEEE-eCCCceeeEEEC
Confidence                111    1234555   99999999999953         2236899999743   2222222 123358899999


Q ss_pred             CCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEe
Q 016199          290 GEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHY  351 (393)
Q Consensus       290 ~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~  351 (393)
                      +||+ +.+++....                                 +.|..+|. .++.+..+
T Consensus       308 ~Dgkp~lyvtn~~s---------------------------------~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       308 QDAKPLLYALSTGD---------------------------------KTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCCCeEEEEeCCCC---------------------------------CcEEEEECcCCeEEeee
Confidence            9999 555555331                                 45888886 57788777

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.38  E-value=0.00042  Score=62.95  Aligned_cols=198  Identities=13%  Similarity=0.131  Sum_probs=125.9

Q ss_pred             cCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe
Q 016199           72 QGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        72 ~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      -.+++...|.-..-++++..+||+..+.++.|+.+..||..+++   ....+........++++++|.      +-+|..
T Consensus        53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~---~t~~f~GH~~dVlsva~s~dn------~qivSG  123 (315)
T KOG0279|consen   53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE---STRRFVGHTKDVLSVAFSTDN------RQIVSG  123 (315)
T ss_pred             CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc---EEEEEEecCCceEEEEecCCC------ceeecC
Confidence            33444445544556668899999988888999999999998754   144555455678999999998      666654


Q ss_pred             C-CCceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          152 A-YKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       152 ~-~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                      . +.-|..++.-|...+. ..++..-..+..+.+.|+. +.++..++.                .+.|-.+|..+-++..
T Consensus       124 SrDkTiklwnt~g~ck~t-~~~~~~~~WVscvrfsP~~~~p~Ivs~s~----------------DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  124 SRDKTIKLWNTLGVCKYT-IHEDSHREWVSCVRFSPNESNPIIVSASW----------------DKTVKVWNLRNCQLRT  186 (315)
T ss_pred             CCcceeeeeeecccEEEE-EecCCCcCcEEEEEEcCCCCCcEEEEccC----------------CceEEEEccCCcchhh
Confidence            4 4456677765511111 1111113567788999975 666655433                4567778876655433


Q ss_pred             -EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          230 -LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       230 -~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                       +.......|.++++|||. +..+.-..+.++.++++..+.  ...+- . ...-+.+++.++ ++|++....
T Consensus       187 ~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl~-a-~~~v~sl~fspn-rywL~~at~  253 (315)
T KOG0279|consen  187 TFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSLE-A-FDIVNSLCFSPN-RYWLCAATA  253 (315)
T ss_pred             ccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce--eEecc-C-CCeEeeEEecCC-ceeEeeccC
Confidence             233456678999999994 666666778999999864321  11111 1 112356788764 688876544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=0.00018  Score=71.93  Aligned_cols=175  Identities=14%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             ceEEEecCCCEEEEEec-C--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc---eEEE
Q 016199           86 EDLLYDAHSKLIYTGCE-D--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG---LLKI  159 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~-~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g---l~~i  159 (393)
                      .+++++|||+.|...+. +  ..|+.++..++.    .+.+....+.-...++.+||     +.|+++....|   |+.+
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~----~~~l~~~~g~~~~~~wSPDG-----~~La~~~~~~g~~~Iy~~  277 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA----RKVVASFRGHNGAPAFSPDG-----SRLAFASSKDGVLNIYVM  277 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc----eEEEecCCCccCceeECCCC-----CEEEEEEecCCcEEEEEE
Confidence            45789999986654433 2  369999987664    33333222333467899999     24555433333   7778


Q ss_pred             eCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199          160 SGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF  236 (393)
Q Consensus       160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~  236 (393)
                      |.++  .+.+... .    .......+++||. |+++...               .+.-.||.++..++..+.+ .... 
T Consensus       278 d~~~~~~~~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l-~~~~-  335 (429)
T PRK01742        278 GANGGTPSQLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLV-GGRG-  335 (429)
T ss_pred             ECCCCCeEeeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEe-cCCC-
Confidence            8765  3333221 1    1234678999995 6666311               2234788888876665544 2222 


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                       ...+++|||+.+++...  .+++++++.+.   ..+.+....  .-....++++|++.+...
T Consensus       336 -~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g---~~~~lt~~~--~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        336 -YSAQISADGKTLVMING--DNVVKQDLTSG---STEVLSSTF--LDESPSISPNGIMIIYSS  390 (429)
T ss_pred             -CCccCCCCCCEEEEEcC--CCEEEEECCCC---CeEEecCCC--CCCCceECCCCCEEEEEE
Confidence             34678999998887754  67888887532   222222111  123467899998665544

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.35  E-value=5.3e-06  Score=62.99  Aligned_cols=83  Identities=23%  Similarity=0.375  Sum_probs=59.7

Q ss_pred             ccEEEcCCCcEEEEeCCCc-cchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCe
Q 016199          180 DGVDVADDGMIYFTDASNK-YYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRR  258 (393)
Q Consensus       180 ~~l~~d~dG~l~~td~~~~-~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r  258 (393)
                      |+|+.-....+|+|+...- ..+.. +++..-+...+.|..||++  +.+.+++++.+||||++++|++.|||++...+.
T Consensus         1 NDIvavG~~sFy~TNDhyf~~~~l~-~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~   77 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDHYFTDPFLR-LLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHS   77 (86)
T ss_pred             CCEEEECcCcEEEECchhhCcHHHH-HHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence            3555545557888854221 11111 1233334456789999974  677889999999999999999999999999999


Q ss_pred             EEEEEec
Q 016199          259 CRKFYIK  265 (393)
Q Consensus       259 i~~~~~~  265 (393)
                      |..|..+
T Consensus        78 I~vy~~~   84 (86)
T PF01731_consen   78 IHVYKRH   84 (86)
T ss_pred             EEEEEec
Confidence            9999864

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.30  E-value=0.0013  Score=65.26  Aligned_cols=162  Identities=10%  Similarity=0.090  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc--eEEEeeccCCcccccc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS--TVLLTDEAEGQKFKLT  179 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g--~~~l~~~~~g~~~~~~  179 (393)
                      .|+..+.++..    .+.+..........++.++|     +.|+++...   ..|+.++.++  ...+. ...+.    .
T Consensus       171 ~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg-----~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~----~  236 (417)
T TIGR02800       171 ELQVADYDGAN----PQTITRSREPILSPAWSPDG-----QKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGM----N  236 (417)
T ss_pred             eEEEEcCCCCC----CEEeecCCCceecccCCCCC-----CEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCC----c
Confidence            47777765543    34443333335567788888     245444332   2377888654  33332 22221    2


Q ss_pred             ccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--C
Q 016199          180 DGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--M  256 (393)
Q Consensus       180 ~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~  256 (393)
                      ..+.+.+|| .|+++...               .....||.+|..++..+.+..........++++||+.++++...  .
T Consensus       237 ~~~~~spDg~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~  301 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGS  301 (417)
T ss_pred             cceEECCCCCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCC
Confidence            356789998 46665311               22346999999888776665433333456889999988765432  2


Q ss_pred             CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          257 RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       257 ~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ..|+.+++++.+   ...+. .........+++++|++.+.+.
T Consensus       302 ~~iy~~d~~~~~---~~~l~-~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       302 PQIYMMDADGGE---VRRLT-FRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             ceEEEEECCCCC---EEEee-cCCCCccCeEECCCCCEEEEEE
Confidence            378888876432   22222 1122334567888988554443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.26  E-value=0.00022  Score=66.53  Aligned_cols=197  Identities=15%  Similarity=0.196  Sum_probs=116.9

Q ss_pred             cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCC---Cc---ceeeeee----cC--CCceeeeEECCCCCCCCceEEEE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP---AD---SLVHNWI----NT--GGRPLGIAFANSDPDADRITMIV  149 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~---~~---~~~~~~~----~~--~~~p~gl~~d~~G~~~~~~~L~v  149 (393)
                      +..|=+++.+++  .||+++.. .|+++....+.   +.   ..-.-|.    ..  .-..+.|++ .++      .+|+
T Consensus        48 F~r~MGl~~~~~--~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~-~~~------~l~f  117 (335)
T TIGR03032        48 FPRPMGLAVSPQ--SLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL-GAG------RLLF  117 (335)
T ss_pred             cCccceeeeeCC--eEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee-cCC------cEEE
Confidence            455656776654  69998865 48877322111   00   0000011    11  123578888 455      6777


Q ss_pred             EeC-CCceEEEeCCc--eEEEee----ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          150 ADA-YKGLLKISGNS--TVLLTD----EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       150 ~~~-~~gl~~id~~g--~~~l~~----~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                      .++ ..-|..+++.-  ...+..    ......-=+.|+++.....--|+|-.+..-....|.    +....|++. +|.
T Consensus       118 VNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-idv  192 (335)
T TIGR03032       118 VNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR----EGRRDGGCV-IDI  192 (335)
T ss_pred             EECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc----ccccCCeEE-EEe
Confidence            765 45577887754  222211    111111124578888654467777544321111111    123345554 676


Q ss_pred             CCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecC
Q 016199          223 VTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATE  301 (393)
Q Consensus       223 ~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~  301 (393)
                      .++  +.+++++.+|.+-.+. || .||+++++.+++.+++.+   +|+.+..+ ..||+|.|+.+.  |+ ++|++...
T Consensus       193 ~s~--evl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~---~G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~  262 (335)
T TIGR03032       193 PSG--EVVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQ---AGKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKL  262 (335)
T ss_pred             CCC--CEEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCC---CCcEEEEE-ECCCCCccccee--CCEEEEEeccc
Confidence            666  4578899999998886 55 699999999999999974   35567665 789999999997  77 55788877


Q ss_pred             cc
Q 016199          302 FS  303 (393)
Q Consensus       302 r~  303 (393)
                      |.
T Consensus       263 R~  264 (335)
T TIGR03032       263 RE  264 (335)
T ss_pred             cC
Confidence            73

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.26  E-value=9.7e-05  Score=73.42  Aligned_cols=109  Identities=16%  Similarity=0.259  Sum_probs=73.7

Q ss_pred             ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-------c-CccCCCcEEEcCCC-
Q 016199          176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-------S-DLYFANGVVLSPDQ-  246 (393)
Q Consensus       176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-------~-~l~~~ngi~~s~dg-  246 (393)
                      +..|.+|++.+||++||+.                 ...|+|+++++.++..+.+.       . +..-..||+++||- 
T Consensus        29 L~~Pw~maflPDG~llVtE-----------------R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~   91 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTE-----------------RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM   91 (454)
T ss_pred             CCCceEEEEcCCCeEEEEE-----------------ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence            4568899999999999995                 23588999987665433221       1 23446789999773 


Q ss_pred             -----CEEEEEeCC---------CCeEEEEEecCC--CCcceeeeeccCCCC----CCeEEECCCCCEEEEEecC
Q 016199          247 -----THLVYCETS---------MRRCRKFYIKGK--NAGRVEKFIETLPGL----PDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       247 -----~~l~v~~~~---------~~ri~~~~~~g~--~~~~~~~~~~~l~g~----P~~i~~d~~G~lwva~~~~  301 (393)
                           +++|++-+.         ..+|.||.++..  .....+.+...+|..    -..|++++||.|||++...
T Consensus        92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606        92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 478888532         568999988632  223334444455422    2348899999999998765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.0011  Score=66.42  Aligned_cols=178  Identities=14%  Similarity=0.164  Sum_probs=101.1

Q ss_pred             eEEEecCCCE---EEEEecCC--eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEE
Q 016199           87 DLLYDAHSKL---IYTGCEDG--WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLK  158 (393)
Q Consensus        87 ~ia~d~~g~~---L~~~~~~g--~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~  158 (393)
                      +.+|+|||+.   +|++..+|  .|+.++.+++.    ...+....+.....++.+||     +.|.+.....   .++.
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~----~~~lt~~~g~~~~p~wSPDG-----~~Laf~s~~~g~~di~~  259 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA----GKKILALQGNQLMPTFSPRK-----KLLAFISDRYGNPDLFI  259 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCCCC----ceEeecCCCCccceEECCCC-----CEEEEEECCCCCcceeE
Confidence            3579999873   45666554  69999998776    45554444455567889999     2444432221   2443


Q ss_pred             --EeCC----c-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCC--CCeEE
Q 016199          159 --ISGN----S-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV--TKETK  228 (393)
Q Consensus       159 --id~~----g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~--t~~~~  228 (393)
                        ++.+    + .+.+.....    .......++|||. |+++...               .+.-.||.++..  ++..+
T Consensus       260 ~~~~~~~g~~g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~  320 (428)
T PRK01029        260 QSFSLETGAIGKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPR  320 (428)
T ss_pred             EEeecccCCCCcceEeecCCC----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceE
Confidence              3322    2 222321111    1123568899995 6665311               122368888754  23344


Q ss_pred             EEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          229 VLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       229 ~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      .+..........+++|||+.|+++...  ...|+.+++++.   +.+.+... +....+...++||+..+
T Consensus       321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---~~~~Lt~~-~~~~~~p~wSpDG~~L~  386 (428)
T PRK01029        321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG---RDYQLTTS-PENKESPSWAIDSLHLV  386 (428)
T ss_pred             EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC---CeEEccCC-CCCccceEECCCCCEEE
Confidence            443333344567899999988877543  347999998643   23333322 23345677888988433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.24  E-value=0.0025  Score=62.47  Aligned_cols=218  Identities=14%  Similarity=0.153  Sum_probs=115.3

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCc-eeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceE
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGR-PLGIAFANSDPDADRITMIVADAYKGLLKISGN-STV  165 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~-p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~  165 (393)
                      ++++  ++.+|+++.+|.|+.++..+++    ...-...... ..+.+.+ ++      ++|+++..+.++.+|.+ |..
T Consensus        61 p~v~--~~~v~v~~~~g~v~a~d~~tG~----~~W~~~~~~~~~~~p~v~-~~------~v~v~~~~g~l~ald~~tG~~  127 (377)
T TIGR03300        61 PAVA--GGKVYAADADGTVVALDAETGK----RLWRVDLDERLSGGVGAD-GG------LVFVGTEKGEVIALDAEDGKE  127 (377)
T ss_pred             eEEE--CCEEEEECCCCeEEEEEccCCc----EeeeecCCCCcccceEEc-CC------EEEEEcCCCEEEEEECCCCcE
Confidence            4444  3469999999999999987664    2211122221 1233444 56      89999777779999974 533


Q ss_pred             EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-Ccc-----CCCc
Q 016199          166 LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLY-----FANG  239 (393)
Q Consensus       166 ~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~-----~~ng  239 (393)
                      .......+....   ...+ .++.+|+..                  ..+.|+.+|+++|+..-... ...     ....
T Consensus       128 ~W~~~~~~~~~~---~p~v-~~~~v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s  185 (377)
T TIGR03300       128 LWRAKLSSEVLS---PPLV-ANGLVVVRT------------------NDGRLTALDAATGERLWTYSRVTPALTLRGSAS  185 (377)
T ss_pred             eeeeccCceeec---CCEE-ECCEEEEEC------------------CCCeEEEEEcCCCceeeEEccCCCceeecCCCC
Confidence            332222222111   1122 256777763                  35679999998776432111 100     0011


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC--C-CC---------CCeEEECCCCCEEEEEecCcchhhh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL--P-GL---------PDNIRYDGEGHYLIALATEFSTYWD  307 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l--~-g~---------P~~i~~d~~G~lwva~~~~r~~~~~  307 (393)
                      ..+ .++ .+|+ ....++++.+++..   ++. .+....  + +.         .....+ .++.+|++...       
T Consensus       186 p~~-~~~-~v~~-~~~~g~v~ald~~t---G~~-~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~-------  250 (377)
T TIGR03300       186 PVI-ADG-GVLV-GFAGGKLVALDLQT---GQP-LWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ-------  250 (377)
T ss_pred             CEE-ECC-EEEE-ECCCCEEEEEEccC---CCE-eeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcC-------
Confidence            122 233 5555 44567899998742   211 111010  0 00         001112 24567776543       


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                                                  +.++.+|. +|+++........   ......++++|+++ ....+..+|.+.
T Consensus       251 ----------------------------g~l~a~d~~tG~~~W~~~~~~~---~~p~~~~~~vyv~~-~~G~l~~~d~~t  298 (377)
T TIGR03300       251 ----------------------------GRVAALDLRSGRVLWKRDASSY---QGPAVDDNRLYVTD-ADGVVVALDRRS  298 (377)
T ss_pred             ----------------------------CEEEEEECCCCcEEEeeccCCc---cCceEeCCEEEEEC-CCCeEEEEECCC
Confidence                                        46888886 5777665542221   22234678999986 445788888754


Q ss_pred             C
Q 016199          387 H  387 (393)
Q Consensus       387 ~  387 (393)
                      .
T Consensus       299 G  299 (377)
T TIGR03300       299 G  299 (377)
T ss_pred             C
Confidence            3

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.0035  Score=62.50  Aligned_cols=159  Identities=16%  Similarity=0.136  Sum_probs=89.9

Q ss_pred             eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeCC---CceEEEeCCc--eEEEeeccCCccccc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADAY---KGLLKISGNS--TVLLTDEAEGQKFKL  178 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~~---~gl~~id~~g--~~~l~~~~~g~~~~~  178 (393)
                      +|+..|.++..    ...+.. .+.-....+.++|     ++ +++....   ..|+.+|..+  .+.+.. ..+..   
T Consensus       170 ~l~~~d~dg~~----~~~~~~-~~~~~~p~wSpDG-----~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~---  235 (419)
T PRK04043        170 NIVLADYTLTY----QKVIVK-GGLNIFPKWANKE-----QTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGML---  235 (419)
T ss_pred             eEEEECCCCCc----eeEEcc-CCCeEeEEECCCC-----CcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcE---
Confidence            45555555443    232322 2223456778888     22 5554333   2388888765  444432 22321   


Q ss_pred             cccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC-
Q 016199          179 TDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM-  256 (393)
Q Consensus       179 ~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~-  256 (393)
                       ....++||| .+.++...               .+...||.+|.++++.+.+...-.......++|||+.++++.... 
T Consensus       236 -~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g  299 (419)
T PRK04043        236 -VVSDVSKDGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG  299 (419)
T ss_pred             -EeeEECCCCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC
Confidence             134588999 57666321               234579999998888777654322223457999999887775432 


Q ss_pred             -CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          257 -RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       257 -~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                       ..|+++++++.   +.+.+...  +. .+..+++||+..+-..
T Consensus       300 ~~~Iy~~dl~~g---~~~rlt~~--g~-~~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        300 YPNIFMKKLNSG---SVEQVVFH--GK-NNSSVSTYKNYIVYSS  337 (419)
T ss_pred             CceEEEEECCCC---CeEeCccC--CC-cCceECCCCCEEEEEE
Confidence             37899988653   23222211  11 1357899998554433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.19  E-value=0.00025  Score=72.21  Aligned_cols=176  Identities=11%  Similarity=0.055  Sum_probs=101.9

Q ss_pred             EecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC--CCc--eEEEeCCc-
Q 016199           90 YDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA--YKG--LLKISGNS-  163 (393)
Q Consensus        90 ~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~--~~g--l~~id~~g-  163 (393)
                      +++||+.++.... .+.+..+|.++.+    +..-...+++|..+.++++|     +.+|++..  ..|  +..++.+. 
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etme----V~~qV~Vdgnpd~v~~spdG-----k~afvTsyNsE~G~tl~em~a~e~  270 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETME----VAWQVMVDGNLDNVDTDYDG-----KYAFSTCYNSEEGVTLAEMMAAER  270 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccce----EEEEEEeCCCcccceECCCC-----CEEEEeccCcccCcceeeeccccC
Confidence            4455554433322 3345566665433    32223456789999999998     25677632  222  33343321 


Q ss_pred             eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-----CeEEEEecCccCC
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-----KETKVLVSDLYFA  237 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-----~~~~~~~~~l~~~  237 (393)
                      -..+.....+.       -+..++| ..|+.                    .++|-.+|..+     .++..+..--..|
T Consensus       271 d~~vvfni~~i-------ea~vkdGK~~~V~--------------------gn~V~VID~~t~~~~~~~v~~yIPVGKsP  323 (635)
T PRK02888        271 DWVVVFNIARI-------EEAVKAGKFKTIG--------------------GSKVPVVDGRKAANAGSALTRYVPVPKNP  323 (635)
T ss_pred             ceEEEEchHHH-------HHhhhCCCEEEEC--------------------CCEEEEEECCccccCCcceEEEEECCCCc
Confidence            11111111110       0223455 34442                    24688899876     3444444455779


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCCC------Ccceeeeecc--CCCCCCeEEECCCCCEEEEEecC
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKN------AGRVEKFIET--LPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~------~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +|++++|||+++|+++-....+..++++..+      ..-......+  +.--|--.++|++|+.|.++...
T Consensus       324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~d  395 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLD  395 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeec
Confidence            9999999999999999999999999986422      0001111111  22247788999999999998755

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.19  E-value=0.0027  Score=61.90  Aligned_cols=175  Identities=14%  Similarity=0.124  Sum_probs=95.4

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEecC-CeEEEEEcCCCCCcc--ee-eeeec----------------CCCceeee
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCED-GWIKRVTLNDSPADS--LV-HNWIN----------------TGGRPLGI  133 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~-g~I~~~~~~~~~~~~--~~-~~~~~----------------~~~~p~gl  133 (393)
                      .+.+..| +..|-.++..|+| .+.+.... |.+..+.........  .. ..+..                ....+.++
T Consensus        59 ~~~~a~g-Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~  136 (399)
T COG2133          59 VEVVAQG-LEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGI  136 (399)
T ss_pred             ccccccc-ccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEE
Confidence            4555566 7889999999999 56666655 666555422211000  00 00101                01124455


Q ss_pred             EECCCCCCCCceEEEEEeCCCceEEEeCC-c----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhh-----
Q 016199          134 AFANSDPDADRITMIVADAYKGLLKISGN-S----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE-----  203 (393)
Q Consensus       134 ~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~-----  203 (393)
                      ++-.+       .+|+++ ..++.+++.. .    ..++.....+....+...|+++|||.||++..+.......     
T Consensus       137 a~~~~-------~~~~~n-~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~  208 (399)
T COG2133         137 SEPGG-------GLYVAN-RVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVS  208 (399)
T ss_pred             EeecC-------CceEEE-EEEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccc
Confidence            54332       355553 3445566511 1    1222233333223456679999999999986544111000     


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC  259 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri  259 (393)
                      ..-.+++. ...+++..|+.+...+.+..++..|.|++++|....||++|.....+
T Consensus       209 ~~Gk~~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         209 LAGKVLRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             cccceeee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence            00001111 12235566666666677788899999999999966899999776333

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.16  E-value=0.0027  Score=57.87  Aligned_cols=228  Identities=11%  Similarity=0.173  Sum_probs=142.7

Q ss_pred             CEEEEEecCCeEEEEEcCCCCC--cceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE-EeCCc---eEEEe
Q 016199           95 KLIYTGCEDGWIKRVTLNDSPA--DSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK-ISGNS---TVLLT  168 (393)
Q Consensus        95 ~~L~~~~~~g~I~~~~~~~~~~--~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~-id~~g---~~~l~  168 (393)
                      +.|+-+++|..++.++......  ...++.+........+++..++|      ++.+.....+..+ .|..+   .+.+.
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg------~~alS~swD~~lrlWDl~~g~~t~~f~  102 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG------NFALSASWDGTLRLWDLATGESTRRFV  102 (315)
T ss_pred             ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC------ceEEeccccceEEEEEecCCcEEEEEE
Confidence            3566777788888888764320  11133333223346788888999      7777766666544 57654   22232


Q ss_pred             eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCC
Q 016199          169 DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQ  246 (393)
Q Consensus       169 ~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg  246 (393)
                          |.. .-+-++++++|.+-.++-                 +....+..||..+...-...++  -...+.+.|+|..
T Consensus       103 ----GH~-~dVlsva~s~dn~qivSG-----------------SrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen  103 ----GHT-KDVLSVAFSTDNRQIVSG-----------------SRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             ----ecC-CceEEEEecCCCceeecC-----------------CCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence                221 234578999999877773                 3445688888776544444444  4567899999996


Q ss_pred             -CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhh
Q 016199          247 -THLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRY  325 (393)
Q Consensus       247 -~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~  325 (393)
                       +-++++......+-.+++++-+.  ...|. +..++-+-+++++||.+.......                        
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSpDGslcasGgkd------------------------  213 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSPDGSLCASGGKD------------------------  213 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcch--hhccc-cccccEEEEEECCCCCEEecCCCC------------------------
Confidence             45667777777788888865321  12233 334556678899999988763322                        


Q ss_pred             hCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCC
Q 016199          326 LGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       326 ~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                                +.++..|. +|+-+.++..  ...+....-..++.|+.-..+..|-..+++....
T Consensus       214 ----------g~~~LwdL~~~k~lysl~a--~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  214 ----------GEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAV  266 (315)
T ss_pred             ----------ceEEEEEccCCceeEeccC--CCeEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence                      34555554 5666655543  3334444556688999988888888888765443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.16  E-value=3e-05  Score=74.80  Aligned_cols=161  Identities=14%  Similarity=0.171  Sum_probs=95.0

Q ss_pred             cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEec-------CccCCCcEEEcCC---
Q 016199          177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVS-------DLYFANGVVLSPD---  245 (393)
Q Consensus       177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~-------~l~~~ngi~~s~d---  245 (393)
                      ..|.+|++.|||++|+++                  ..|+|++++.+ +.. ..+..       +.....|++++|+   
T Consensus         2 ~~P~~~a~~pdG~l~v~e------------------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~   62 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAE------------------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS   62 (331)
T ss_dssp             SSEEEEEEETTSCEEEEE------------------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred             CCceEEEEeCCCcEEEEe------------------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence            346789999999999995                  36899999954 443 22211       2344578999985   


Q ss_pred             CCEEEEEeCCC--------CeEEEEEecCC--CCcceeeeeccCCC-----C-CCeEEECCCCCEEEEEecCcchhhhhh
Q 016199          246 QTHLVYCETSM--------RRCRKFYIKGK--NAGRVEKFIETLPG-----L-PDNIRYDGEGHYLIALATEFSTYWDLA  309 (393)
Q Consensus       246 g~~l~v~~~~~--------~ri~~~~~~g~--~~~~~~~~~~~l~g-----~-P~~i~~d~~G~lwva~~~~r~~~~~~~  309 (393)
                      +..+|+..+..        .+|.||.++..  .....+.++..+|.     + ...|++++||.|||+.....+.   -.
T Consensus        63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~---~~  139 (331)
T PF07995_consen   63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND---DN  139 (331)
T ss_dssp             C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG---GG
T ss_pred             CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc---cc
Confidence            35888888743        58999998754  23334444444343     1 1348999999999998765430   00


Q ss_pred             hcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEE-------------EeeCCCCCccEEEEEeC-CEEEEEecC
Q 016199          310 YRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIA-------------HYYDPEMSLISSAIKIG-DHLYCGSVH  375 (393)
Q Consensus       310 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~-------------~~~d~~~~~~~~~~~~~-g~Lyigs~~  375 (393)
                      +                  .-.....+.|++++++|++..             .+...--+..-...... |.||++...
T Consensus       140 ~------------------~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G  201 (331)
T PF07995_consen  140 A------------------QDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG  201 (331)
T ss_dssp             G------------------CSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred             c------------------cccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence            1                  111223477999999987421             11111112223334455 899998765


Q ss_pred             CC
Q 016199          376 HR  377 (393)
Q Consensus       376 ~~  377 (393)
                      .+
T Consensus       202 ~~  203 (331)
T PF07995_consen  202 PD  203 (331)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.0017  Score=65.03  Aligned_cols=137  Identities=12%  Similarity=0.131  Sum_probs=79.6

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchh
Q 016199          129 RPLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLR  202 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~  202 (393)
                      .....++.++|     +.|..+....   .|+.+|.++  .+.+. ...+.    ...++++|||+ |+++...      
T Consensus       205 ~v~~p~wSPDG-----~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~g~----~~~~~wSPDG~~La~~~~~------  268 (429)
T PRK01742        205 PLMSPAWSPDG-----SKLAYVSFENKKSQLVVHDLRSGARKVVA-SFRGH----NGAPAFSPDGSRLAFASSK------  268 (429)
T ss_pred             ccccceEcCCC-----CEEEEEEecCCCcEEEEEeCCCCceEEEe-cCCCc----cCceeECCCCCEEEEEEec------
Confidence            35678889998     2343332222   388888755  33332 22221    23578999995 5554210      


Q ss_pred             hheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCC
Q 016199          203 EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLP  280 (393)
Q Consensus       203 ~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~  280 (393)
                               .+.-.||.+|..+++.+.+..........+++|||+.++++....+  +|+.++..+.   ..+.+ .. .
T Consensus       269 ---------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---~~~~l-~~-~  334 (429)
T PRK01742        269 ---------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---GASLV-GG-R  334 (429)
T ss_pred             ---------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEe-cC-C
Confidence                     2233589999988887776555445567899999998877654333  5666665432   12222 11 1


Q ss_pred             CCCCeEEECCCCCEEEE
Q 016199          281 GLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       281 g~P~~i~~d~~G~lwva  297 (393)
                      +  .+..++++|+..+.
T Consensus       335 ~--~~~~~SpDG~~ia~  349 (429)
T PRK01742        335 G--YSAQISADGKTLVM  349 (429)
T ss_pred             C--CCccCCCCCCEEEE
Confidence            2  24567888885443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.13  E-value=0.0021  Score=63.57  Aligned_cols=214  Identities=15%  Similarity=0.181  Sum_probs=114.7

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-------eeeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceEEE
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-------LGIAFANSDPDADRITMIVADAYKGLLKISGN-STVLL  167 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-------~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l  167 (393)
                      .+|+++.++.|+.+|.++++    ....... ..|       ..-+.. +|      .++++...+.++.++.+ |....
T Consensus       162 ~v~v~~~~g~l~ald~~tG~----~~W~~~~-~~~~~~~~~~~sP~v~-~~------~v~~~~~~g~v~a~d~~~G~~~W  229 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGA----VKWTVNL-DVPSLTLRGESAPATA-FG------GAIVGGDNGRVSAVLMEQGQLIW  229 (394)
T ss_pred             EEEEECCCCEEEEEEccCCC----EeeeecC-CCCcccccCCCCCEEE-CC------EEEEEcCCCEEEEEEccCChhhh
Confidence            68888888999999988765    2211111 111       011122 45      78888766668888764 32222


Q ss_pred             eeccC----CccccccccEEE---cCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          168 TDEAE----GQKFKLTDGVDV---ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       168 ~~~~~----g~~~~~~~~l~~---d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                      .....    ...+.....+..   -.+|.+|+++                  ..|.++++|+.+|+..= ...+..+..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~------------------~~g~l~ald~~tG~~~W-~~~~~~~~~~  290 (394)
T PRK11138        230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA------------------YNGNLVALDLRSGQIVW-KREYGSVNDF  290 (394)
T ss_pred             eeccccCCCccchhcccccCCCcEEECCEEEEEE------------------cCCeEEEEECCCCCEEE-eecCCCccCc
Confidence            11111    000000001111   1267888874                  34689999998886421 1122222333


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc-CCC-CCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhh
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET-LPG-LPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-l~g-~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      .+  ++..+|+.. .+++++.++.+.   ++ +.+... +.+ .-...++ .+|.+|++...                  
T Consensus       291 ~~--~~~~vy~~~-~~g~l~ald~~t---G~-~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~------------------  344 (394)
T PRK11138        291 AV--DGGRIYLVD-QNDRVYALDTRG---GV-ELWSQSDLLHRLLTAPVL-YNGYLVVGDSE------------------  344 (394)
T ss_pred             EE--ECCEEEEEc-CCCeEEEEECCC---Cc-EEEcccccCCCcccCCEE-ECCEEEEEeCC------------------
Confidence            33  344788876 468899999742   22 222111 111 1111222 26788887653                  


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                       +.|+.+|+ +|+++..+........+.-...+++||+++. +..|..|++
T Consensus       345 -----------------G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~-~G~l~~~~~  393 (394)
T PRK11138        345 -----------------GYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQAR-DGTVYAITR  393 (394)
T ss_pred             -----------------CEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeC-CceEEEEeC
Confidence                             45888886 6888877764321112222346789999974 446777765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.11  E-value=0.0014  Score=64.86  Aligned_cols=219  Identities=13%  Similarity=0.109  Sum_probs=114.1

Q ss_pred             CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCcee-eeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceEEEeeccC
Q 016199           95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL-GIAFANSDPDADRITMIVADAYKGLLKISGN-STVLLTDEAE  172 (393)
Q Consensus        95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~-gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l~~~~~  172 (393)
                      +.+|+++.+|.++.+|.++++    ........+.+. ...+ .+|      .+|++...+.|+.+|.+ |.........
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~----~~W~~~~~~~~~ssP~v-~~~------~v~v~~~~g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGE----VAWQTKVAGEALSRPVV-SDG------LVLVHTSNGMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCC----CcccccCCCceecCCEE-ECC------EEEEECCCCEEEEEEccCCCEeeeecCC
Confidence            368999889999999987764    221111122111 1122 256      89998766669999975 4333332222


Q ss_pred             Cccc--cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC---------cEE
Q 016199          173 GQKF--KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN---------GVV  241 (393)
Q Consensus       173 g~~~--~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n---------gi~  241 (393)
                      ...+  .....-+++ +|.+|++                  ...+.++.+|+++|+..-.. ....+.         .+.
T Consensus       190 ~~~~~~~~~~sP~v~-~~~v~~~------------------~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~  249 (394)
T PRK11138        190 VPSLTLRGESAPATA-FGGAIVG------------------GDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVD  249 (394)
T ss_pred             CCcccccCCCCCEEE-CCEEEEE------------------cCCCEEEEEEccCChhhhee-ccccCCCccchhcccccC
Confidence            1111  000111222 4567776                  34567888888877532110 000010         011


Q ss_pred             EcC--CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          242 LSP--DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       242 ~s~--dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      .+|  .++.+|++.. .+.++.++.+.   ++ +.+..... .+..+..+ +|++|++...                   
T Consensus       250 ~sP~v~~~~vy~~~~-~g~l~ald~~t---G~-~~W~~~~~-~~~~~~~~-~~~vy~~~~~-------------------  303 (394)
T PRK11138        250 TTPVVVGGVVYALAY-NGNLVALDLRS---GQ-IVWKREYG-SVNDFAVD-GGRIYLVDQN-------------------  303 (394)
T ss_pred             CCcEEECCEEEEEEc-CCeEEEEECCC---CC-EEEeecCC-CccCcEEE-CCEEEEEcCC-------------------
Confidence            111  2347887664 67899999742   22 22322222 22334443 5778887653                   


Q ss_pred             hhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          320 GMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                      +.++.+|. +|+++...........+.....+|+||+++. ...|..+|.+..
T Consensus       304 ----------------g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~-~G~l~~ld~~tG  355 (394)
T PRK11138        304 ----------------DRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDS-EGYLHWINREDG  355 (394)
T ss_pred             ----------------CeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeC-CCEEEEEECCCC
Confidence                            46888886 5666554432211112222335788888864 346777776543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.11  E-value=0.0041  Score=61.19  Aligned_cols=186  Identities=17%  Similarity=0.188  Sum_probs=106.0

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCCCc-----
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAYKG-----  155 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-----  155 (393)
                      .-.++.+.|||.+.-+...||+++.||..+++   .+..+.   ...+...+|...||+.     ++.-+.++.-     
T Consensus       192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge---~vg~l~~~~aHkGsIfalsWsPDs~-----~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE---KVGELEDSDAHKGSIFALSWSPDST-----QFLTVSADKTIKIWD  263 (603)
T ss_pred             ceeeEEECCCCCeEEEecCCccEEEEcCCCcc---EEEEecCCCCccccEEEEEECCCCc-----eEEEecCCceEEEEE
Confidence            34568899999854455569999999877654   133332   2346678888888761     2332222222     


Q ss_pred             -----------------------------eEEEeCCc-eEEEeec-------cCCccccccccEEEcCCCcEEEEeCCCc
Q 016199          156 -----------------------------LLKISGNS-TVLLTDE-------AEGQKFKLTDGVDVADDGMIYFTDASNK  198 (393)
Q Consensus       156 -----------------------------l~~id~~g-~~~l~~~-------~~g~~~~~~~~l~~d~dG~l~~td~~~~  198 (393)
                                                   |..++.+| +..+...       ..|. ...+..+++.+||.-+++     
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~~~i~S-----  337 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDGKTIYS-----  337 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc-ccceeEEEEcCCCCEEEe-----
Confidence                                         12222222 1111100       0111 133556667777643333     


Q ss_pred             cchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee
Q 016199          199 YYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI  276 (393)
Q Consensus       199 ~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~  276 (393)
                                  ++..|.|..++..++..-.+...  .....+++.+..+ .+ ++-.....|.+.++.+......+.+ 
T Consensus       338 ------------gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~-~t~g~Dd~l~~~~~~~~~~t~~~~~-  402 (603)
T KOG0318|consen  338 ------------GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-EL-FTIGWDDTLRVISLKDNGYTKSEVV-  402 (603)
T ss_pred             ------------eccCceEEEEecCCccccccccccccceEEEEeecCCC-cE-EEEecCCeEEEEecccCccccccee-
Confidence                        24567899999877765544322  2345677776645 34 4444678999998865544443332 


Q ss_pred             ccCCCCCCeEEECCCCCEEEEEe
Q 016199          277 ETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       277 ~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                       .++..|.++++.++|.+-+...
T Consensus       403 -~lg~QP~~lav~~d~~~avv~~  424 (603)
T KOG0318|consen  403 -KLGSQPKGLAVLSDGGTAVVAC  424 (603)
T ss_pred             -ecCCCceeEEEcCCCCEEEEEe
Confidence             4566799999999987555444

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.11  E-value=0.00056  Score=64.56  Aligned_cols=192  Identities=15%  Similarity=0.222  Sum_probs=107.4

Q ss_pred             eEEEecCCCEEEEEecC-------------CeEEEEEcCCCCCcceeeeeec------CCCceeeeEECCCCCCCCceEE
Q 016199           87 DLLYDAHSKLIYTGCED-------------GWIKRVTLNDSPADSLVHNWIN------TGGRPLGIAFANSDPDADRITM  147 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~-------------g~I~~~~~~~~~~~~~~~~~~~------~~~~p~gl~~d~~G~~~~~~~L  147 (393)
                      .+.+|+.| +||+-+..             .+|+.||+++.+   .++.+.-      .......+++|.......+...
T Consensus         5 ~v~iD~~~-rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~---li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    5 RVQIDECG-RLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ---LIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             EEEE-TTS-EEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC---EEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred             EEEEcCCC-CEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc---EEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence            47789887 58875421             379999998775   2333321      1234567888762100011279


Q ss_pred             EEEeCC-CceEEEeCCc--e-EEEeec-----------cCCccccc---cccEEEcC---CC-cEEEEeCCCccchhhhe
Q 016199          148 IVADAY-KGLLKISGNS--T-VLLTDE-----------AEGQKFKL---TDGVDVAD---DG-MIYFTDASNKYYLREYI  205 (393)
Q Consensus       148 ~v~~~~-~gl~~id~~g--~-~~l~~~-----------~~g~~~~~---~~~l~~d~---dG-~l~~td~~~~~~~~~~~  205 (393)
                      ||+|.. .||..+|...  . +++...           ..|..+..   +.+++..+   +| .||+.-.++        
T Consensus        81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss--------  152 (287)
T PF03022_consen   81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS--------  152 (287)
T ss_dssp             EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---------
T ss_pred             EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC--------
Confidence            999985 6799998654  2 222211           11222222   33445443   44 577775322        


Q ss_pred             ehhcccCCCcEEEEEeCC---C----------CeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC-Ccc
Q 016199          206 LDIFEGKPNGRLLSFDPV---T----------KETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGR  271 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~---t----------~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~  271 (393)
                               ..+|+...+   .          ..++.+........|++++++| .||+++...+.|.+++.+++- ...
T Consensus       153 ---------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~  222 (287)
T PF03022_consen  153 ---------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPEN  222 (287)
T ss_dssp             ---------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT-EEEEEECCCTEEEEEETTTSB-GCC
T ss_pred             ---------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC-cEEEecCCCCeEEEEeCCCCcCccc
Confidence                     245555421   0          0122222222456899999988 899999999999999987642 223


Q ss_pred             eeeeecc-C-CCCCCeEEECC--CCCEEEEEec
Q 016199          272 VEKFIET-L-PGLPDNIRYDG--EGHYLIALAT  300 (393)
Q Consensus       272 ~~~~~~~-l-~g~P~~i~~d~--~G~lwva~~~  300 (393)
                      .+.++.. . --+|+++.++.  +|.+|+.+..
T Consensus       223 ~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  223 FEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             hheeEEcCceeeccceeeeccccCceEEEEECc
Confidence            4445422 1 24799999999  9999998763

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.10  E-value=0.00041  Score=71.27  Aligned_cols=220  Identities=16%  Similarity=0.238  Sum_probs=135.6

Q ss_pred             cCCeEEEEEcCCCCCcc-eeeeeec-CCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc--eEEEeeccCCccc
Q 016199          102 EDGWIKRVTLNDSPADS-LVHNWIN-TGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS--TVLLTDEAEGQKF  176 (393)
Q Consensus       102 ~~g~I~~~~~~~~~~~~-~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g--~~~l~~~~~g~~~  176 (393)
                      ..+.|.++..++..-.+ ..+.+.. ...-+.||.||=..     +.+|..|. +..|-+-..+|  .+.+.    ...+
T Consensus       997 qg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e-----~mvyWtDv~g~SI~rasL~G~Ep~ti~----n~~L 1067 (1289)
T KOG1214|consen  997 QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRE-----RMVYWTDVAGRSISRASLEGAEPETIV----NSGL 1067 (1289)
T ss_pred             ccceEEEeecCcchhchhhhhceEecccceeeeeeccccc-----ceEEEeecCCCccccccccCCCCceee----cccC
Confidence            34567777766543111 0121222 23457899998544     26777765 44566666666  22222    2234


Q ss_pred             cccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC
Q 016199          177 KLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS  255 (393)
Q Consensus       177 ~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~  255 (393)
                      ..+.+|++|--+ ++|.+|+-.+               .-.+-.+|-+ .+...+.+++..|.+|.+++=++.|||++..
T Consensus      1068 ~SPEGiAVDh~~Rn~ywtDS~lD---------------~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWn 1131 (1289)
T KOG1214|consen 1068 ISPEGIAVDHIRRNMYWTDSVLD---------------KIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWN 1131 (1289)
T ss_pred             CCccceeeeeccceeeeeccccc---------------hhheeecCCc-eeeEEEeecccCcceEEeecccCceeecccc
Confidence            568899999876 8999985321               1235556543 2334456789999999999988899999976


Q ss_pred             CC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC--EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCC
Q 016199          256 MR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH--YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPM  331 (393)
Q Consensus       256 ~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~--lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  331 (393)
                      +.  .|-+-+++|++   .++|+...-++|+|+.+|+.-+  -||-...                               
T Consensus      1132 RenPkIets~mDG~N---rRilin~DigLPNGLtfdpfs~~LCWvDAGt------------------------------- 1177 (1289)
T KOG1214|consen 1132 RENPKIETSSMDGEN---RRILINTDIGLPNGLTFDPFSKLLCWVDAGT------------------------------- 1177 (1289)
T ss_pred             ccCCcceeeccCCcc---ceEEeecccCCCCCceeCcccceeeEEecCC-------------------------------
Confidence            54  67788888763   5567655567999999999876  5664332                               


Q ss_pred             CCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199          332 GKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       332 ~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                          +.+-.+.++|.--+.+... .+..-.+..+.+++|.+.+..++|..+++.
T Consensus      1178 ----~rleC~~p~g~gRR~i~~~-LqYPF~itsy~~~fY~TDWk~n~vvsv~~~ 1226 (1289)
T KOG1214|consen 1178 ----KRLECTLPDGTGRRVIQNN-LQYPFSITSYADHFYHTDWKRNGVVSVNKH 1226 (1289)
T ss_pred             ----cceeEecCCCCcchhhhhc-ccCceeeeeccccceeeccccCceEEeecc
Confidence                2355666665322222211 111123444556788888888888877753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.09  E-value=0.0019  Score=63.33  Aligned_cols=125  Identities=13%  Similarity=0.087  Sum_probs=68.7

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCC-CCCeEEECC
Q 016199          213 PNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE-TLPG-LPDNIRYDG  290 (393)
Q Consensus       213 ~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-~l~g-~P~~i~~d~  290 (393)
                      ..|.++++|+++++..-... .......++  +++.+|+.. .+++++.++.+..   + ..+.. .+.+ .-....+ .
T Consensus       249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG---~-~~W~~~~~~~~~~ssp~i-~  319 (377)
T TIGR03300       249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSG---S-ELWKNDELKYRQLTAPAV-V  319 (377)
T ss_pred             cCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEEC-CCCeEEEEECCCC---c-EEEccccccCCccccCEE-E
Confidence            35689999998886432222 222222333  345788875 5789999997422   1 11111 1111 1111223 2


Q ss_pred             CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEE
Q 016199          291 EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHL  369 (393)
Q Consensus       291 ~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~L  369 (393)
                      ++.++++...                                   +.|+.+|+ +|+++..+..+.....+.-...+++|
T Consensus       320 g~~l~~~~~~-----------------------------------G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l  364 (377)
T TIGR03300       320 GGYLVVGDFE-----------------------------------GYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGL  364 (377)
T ss_pred             CCEEEEEeCC-----------------------------------CEEEEEECCCCCEEEEEEcCCCccccCCEEECCEE
Confidence            4567776543                                   45888887 58988887754311222234456789


Q ss_pred             EEEecCCCeEEEE
Q 016199          370 YCGSVHHRGILHL  382 (393)
Q Consensus       370 yigs~~~~~i~~~  382 (393)
                      |+++. +..|..|
T Consensus       365 ~v~~~-dG~l~~~  376 (377)
T TIGR03300       365 LVQTR-DGDLYAF  376 (377)
T ss_pred             EEEeC-CceEEEe
Confidence            99974 3355544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.08  E-value=0.0025  Score=64.29  Aligned_cols=186  Identities=15%  Similarity=0.209  Sum_probs=113.5

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeC-Cc
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISG-NS  163 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~-~g  163 (393)
                      -++.+.++|+.+..++.++.+..+....... ..............+++|.++|      .+.++.+.++ |..+|. +.
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~------~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDG------SYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCC------cEEEEecCCceEEEeeccCC
Confidence            3467889998766666777777776633220 0011111122357899999999      7666655444 555565 32


Q ss_pred             ---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCc
Q 016199          164 ---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANG  239 (393)
Q Consensus       164 ---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ng  239 (393)
                         .+.+.    |.. ..++++++.++|++.++-                 ...+.+..+|..+++... +...-...++
T Consensus       236 ~~~~~~l~----gH~-~~v~~~~f~p~g~~i~Sg-----------------s~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  236 GRNLKTLK----GHS-TYVTSVAFSPDGNLLVSG-----------------SDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CeEEEEec----CCC-CceEEEEecCCCCEEEEe-----------------cCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence               23332    322 346799999999877763                 445678889988766544 3444556788


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEecC
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +++++|++.++.+ +.++.|..||+.+....-.+.+... .+..-..+.++++|.+.+.....
T Consensus       294 ~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d  355 (456)
T KOG0266|consen  294 LAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD  355 (456)
T ss_pred             EEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence            9999999766555 6789999999864321101222211 11111557789999866655543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.06  E-value=0.0017  Score=59.66  Aligned_cols=193  Identities=15%  Similarity=0.187  Sum_probs=100.4

Q ss_pred             CceeeeEECCC-CCCCCceEEEEEeCC-CceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhh
Q 016199          128 GRPLGIAFANS-DPDADRITMIVADAY-KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE  203 (393)
Q Consensus       128 ~~p~gl~~d~~-G~~~~~~~L~v~~~~-~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~  203 (393)
                      ..+.||+++++ +      +||..... ..|+.++.+|  .+.+.  ..|  +.-+.+|+...+|.+.+++         
T Consensus        22 ~e~SGLTy~pd~~------tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~---------   82 (248)
T PF06977_consen   22 DELSGLTYNPDTG------TLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSE---------   82 (248)
T ss_dssp             S-EEEEEEETTTT------EEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEE---------
T ss_pred             CCccccEEcCCCC------eEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEE---------
Confidence            45899999986 5      78877554 4588999988  33322  222  3346688888888887875         


Q ss_pred             heehhcccCCCcEEEEEeC--CCCeE-----EEEecCc-----cCCCcEEEcCCCCEEEEE-eCCCCeEEEEEec--CCC
Q 016199          204 YILDIFEGKPNGRLLSFDP--VTKET-----KVLVSDL-----YFANGVVLSPDQTHLVYC-ETSMRRCRKFYIK--GKN  268 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~--~t~~~-----~~~~~~l-----~~~ngi~~s~dg~~l~v~-~~~~~ri~~~~~~--g~~  268 (393)
                              ...++|+.++.  .+...     +.+.-++     ...-|+++++.++.+|++ |..-.+|+.++..  +..
T Consensus        83 --------Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   83 --------ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD  154 (248)
T ss_dssp             --------TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred             --------cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence                    23456666554  33222     1121111     223589999987666554 4433456666541  111


Q ss_pred             Ccce--eeee-cc-CCCCCCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC
Q 016199          269 AGRV--EKFI-ET-LPGLPDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL  343 (393)
Q Consensus       269 ~~~~--~~~~-~~-l~g~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~  343 (393)
                      ....  ..+. .. .-.-|.++++|+. |++||-...+                                  ..|+.+|.
T Consensus       155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----------------------------------~~l~~~d~  200 (248)
T PF06977_consen  155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----------------------------------RLLLELDR  200 (248)
T ss_dssp             -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT----------------------------------TEEEEE-T
T ss_pred             eeeccccccccccceeccccceEEcCCCCeEEEEECCC----------------------------------CeEEEECC
Confidence            0000  0000 00 0113678898886 6788876654                                  46999999


Q ss_pred             CCcEEEEeeCCC--------C-CccEEEEEeCCEEEEEecCCCeEEEE
Q 016199          344 DGKPIAHYYDPE--------M-SLISSAIKIGDHLYCGSVHHRGILHL  382 (393)
Q Consensus       344 ~g~~~~~~~d~~--------~-~~~~~~~~~~g~Lyigs~~~~~i~~~  382 (393)
                      +|+++..+....        + +.--.+...+|+|||.|- .|-.++|
T Consensus       201 ~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  201 QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF  247 (248)
T ss_dssp             T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred             CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence            999988776422        2 222233446799999984 5566655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.06  E-value=0.00073  Score=65.30  Aligned_cols=188  Identities=13%  Similarity=0.156  Sum_probs=115.3

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-eeeEECCCCCCCCceE--EEEEeCCCceEEEe
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFANSDPDADRIT--MIVADAYKGLLKIS  160 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d~~G~~~~~~~--L~v~~~~~gl~~id  160 (393)
                      +-.++-|.|.-..|.++..++.+..|..+++.+.. ++.. .....| ...+|.++|      .  ++.+....=++.+|
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~-~l~~fPi~~a~f~p~G------~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSI-HLEKFPIQKAEFAPNG------HSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChh-heee-eeccCccceeeecCCC------ceEEEecccceEEEEee
Confidence            44568899988888888889977777777765443 2222 112233 456778888      5  33332222367778


Q ss_pred             CCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199          161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN  238 (393)
Q Consensus       161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n  238 (393)
                      ...  ++.+. ...|.+-..+.-+.+++++.+.+..                 ...|.|+.+..+|+++..-..--....
T Consensus       287 le~ak~~k~~-~~~g~e~~~~e~FeVShd~~fia~~-----------------G~~G~I~lLhakT~eli~s~KieG~v~  348 (514)
T KOG2055|consen  287 LETAKVTKLK-PPYGVEEKSMERFEVSHDSNFIAIA-----------------GNNGHIHLLHAKTKELITSFKIEGVVS  348 (514)
T ss_pred             cccccccccc-CCCCcccchhheeEecCCCCeEEEc-----------------ccCceEEeehhhhhhhhheeeeccEEe
Confidence            755  33332 2334333456778899998754432                 346778888888776532211123457


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +++|+.|++.||++.. .+.|+.|++...  .-...|.+...-.-..+|.+.+|. |+|+...
T Consensus       349 ~~~fsSdsk~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~  407 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGSD  407 (514)
T ss_pred             eEEEecCCcEEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEeccC
Confidence            7889999988888764 569999999643  224456544222234577788888 6666543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.01  E-value=0.0093  Score=59.68  Aligned_cols=222  Identities=11%  Similarity=0.052  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEE-EEEeCC--CceEEEeCCc--eEEEeeccCCcccccc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITM-IVADAY--KGLLKISGNS--TVLLTDEAEGQKFKLT  179 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L-~v~~~~--~gl~~id~~g--~~~l~~~~~g~~~~~~  179 (393)
                      .|+..+.++..    ...+.........-++.+||.   +..+ |+....  ..|+.++.++  .+.+. ...+..    
T Consensus       166 ~l~~~d~dG~~----~~~lt~~~~~~~sP~wSPDG~---~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~----  233 (428)
T PRK01029        166 ELWSVDYDGQN----LRPLTQEHSLSITPTWMHIGS---GFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQ----  233 (428)
T ss_pred             eEEEEcCCCCC----ceEcccCCCCcccceEccCCC---ceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCc----
Confidence            46666655543    233322111123346778871   0112 344322  2488888766  34443 233322    


Q ss_pred             ccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEE--EeCCC---CeEEEEecC-ccCCCcEEEcCCCCEEEEE
Q 016199          180 DGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLS--FDPVT---KETKVLVSD-LYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       180 ~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~--~d~~t---~~~~~~~~~-l~~~ngi~~s~dg~~l~v~  252 (393)
                      ....++||| .|.++...               .+...++.  ++..+   ++.+.+..+ .......+++|||+.|+++
T Consensus       234 ~~p~wSPDG~~Laf~s~~---------------~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~  298 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDR---------------YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFV  298 (428)
T ss_pred             cceEECCCCCEEEEEECC---------------CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence            245789999 56665311               11112333  45433   333444432 2233467899999977765


Q ss_pred             eCC--CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCC
Q 016199          253 ETS--MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPP  330 (393)
Q Consensus       253 ~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~  330 (393)
                      ...  ...|+++++++.. +..+.+. ...+.....+.++||+..+-.....                            
T Consensus       299 s~~~g~~~ly~~~~~~~g-~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~----------------------------  348 (428)
T PRK01029        299 SNKDGRPRIYIMQIDPEG-QSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIK----------------------------  348 (428)
T ss_pred             ECCCCCceEEEEECcccc-cceEEec-cCCCCccceeECCCCCEEEEEEcCC----------------------------
Confidence            532  3368888775321 1222222 1122234567889998443222110                            


Q ss_pred             CCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecC--CCeEEEEeCCCC
Q 016199          331 MGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVH--HRGILHLDVNQH  387 (393)
Q Consensus       331 ~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~--~~~i~~~~~~~~  387 (393)
                         ....|..+|.++...+.+....  ... ....+++..|++.+..  ...|..++++..
T Consensus       349 ---g~~~I~v~dl~~g~~~~Lt~~~~~~~~-p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        349 ---GVRQICVYDLATGRDYQLTTSPENKES-PSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             ---CCcEEEEEECCCCCeEEccCCCCCccc-eEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence               0124777887665555554322  111 1223445566655432  245667776544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.01  E-value=0.0026  Score=62.33  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=84.2

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST  164 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~  164 (393)
                      --+++|.++|+ +.+|+.+|.|..|++.+...   .+......++..+++.-++|      .|+-+.-++.|..+|.+- 
T Consensus       249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~---~k~~~aH~ggv~~L~~lr~G------tllSGgKDRki~~Wd~~y-  317 (626)
T KOG2106|consen  249 VLCVTFLENGD-VITGDSGGNILIWSKGTNRI---SKQVHAHDGGVFSLCMLRDG------TLLSGGKDRKIILWDDNY-  317 (626)
T ss_pred             EEEEEEcCCCC-EEeecCCceEEEEeCCCceE---EeEeeecCCceEEEEEecCc------cEeecCccceEEeccccc-
Confidence            34689999998 77999999999999866431   11221335778889999999      888765556677776332 


Q ss_pred             EEEee-ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEc
Q 016199          165 VLLTD-EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLS  243 (393)
Q Consensus       165 ~~l~~-~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s  243 (393)
                      +.+.. +.+. .+..+.-|+... +.||++.+                  .+.|++=+..++...........--|++..
T Consensus       318 ~k~r~~elPe-~~G~iRtv~e~~-~di~vGTt------------------rN~iL~Gt~~~~f~~~v~gh~delwgla~h  377 (626)
T KOG2106|consen  318 RKLRETELPE-QFGPIRTVAEGK-GDILVGTT------------------RNFILQGTLENGFTLTVQGHGDELWGLATH  377 (626)
T ss_pred             cccccccCch-hcCCeeEEecCC-CcEEEeec------------------cceEEEeeecCCceEEEEecccceeeEEcC
Confidence            11111 1111 122233444333 35999853                  234555554444333322222345788888


Q ss_pred             CCCCEEEEEeCCCCeEEEEE
Q 016199          244 PDQTHLVYCETSMRRCRKFY  263 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~  263 (393)
                      |+.. +|++......+..++
T Consensus       378 ps~~-q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  378 PSKN-QLLTCGQDKHVRLWN  396 (626)
T ss_pred             CChh-heeeccCcceEEEcc
Confidence            8874 555554444444444

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=98.01  E-value=0.00053  Score=65.55  Aligned_cols=186  Identities=19%  Similarity=0.280  Sum_probs=116.0

Q ss_pred             CccCCCceEEEecC--CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           80 GVLKGPEDLLYDAH--SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        80 g~~~~Pe~ia~d~~--g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      |....-.++.|.|.  +..+-+++.||.+..|+.++..   .+..+.....+...++|.|+|      +++....+..-.
T Consensus       215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~---~l~~l~gH~~RVs~VafHPsG------~~L~TasfD~tW  285 (459)
T KOG0272|consen  215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET---PLQDLEGHLARVSRVAFHPSG------KFLGTASFDSTW  285 (459)
T ss_pred             ccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---chhhhhcchhhheeeeecCCC------ceeeecccccch
Confidence            33344455777775  3357788889988777766532   133444445678899999999      776665555444


Q ss_pred             E-EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-Cc
Q 016199          158 K-ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DL  234 (393)
Q Consensus       158 ~-id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l  234 (393)
                      + +|... .+.+  ..+|.. ..+.++++.+||.+..+-.               ....++|  +|..+++...+.. .+
T Consensus       286 RlWD~~tk~ElL--~QEGHs-~~v~~iaf~~DGSL~~tGG---------------lD~~~Rv--WDlRtgr~im~L~gH~  345 (459)
T KOG0272|consen  286 RLWDLETKSELL--LQEGHS-KGVFSIAFQPDGSLAATGG---------------LDSLGRV--WDLRTGRCIMFLAGHI  345 (459)
T ss_pred             hhcccccchhhH--hhcccc-cccceeEecCCCceeeccC---------------ccchhhe--eecccCcEEEEecccc
Confidence            3 35443 2233  223432 4467999999999877621               1234544  4666676655544 45


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC---CCCeEEECC-CCCEEEEEecC
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG---LPDNIRYDG-EGHYLIALATE  301 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g---~P~~i~~d~-~G~lwva~~~~  301 (393)
                      ....+|+++|+| +.+.+.+..+.+..||+.+.+    +.+  ..|+   .-..+++++ .|.+.+++...
T Consensus       346 k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~----~ly--~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  346 KEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS----ELY--TIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             cceeeEeECCCc-eEEeecCCCCcEEEeeecccc----cce--ecccccchhhheEecccCCeEEEEcccC
Confidence            667899999999 677888888999999986432    111  2232   234578887 46566655533

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.00  E-value=2.9e-05  Score=59.37  Aligned_cols=58  Identities=10%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             CcEEEcCCCCEEEEEeCC-----------------CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          238 NGVVLSPDQTHLVYCETS-----------------MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~-----------------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      |++++++++..+|+++++                 ++||++|++   .+++.+++++++. +|+||++++|+.+++-+-
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp---~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP---STKETTVLLDGLY-FPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEET---TTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEEC---CCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence            678999995589999976                 589999997   4556788888887 899999999999554433

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.013  Score=54.24  Aligned_cols=185  Identities=12%  Similarity=0.170  Sum_probs=109.2

Q ss_pred             cCCCceEEEecCCCEEEEEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-ceEE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-GLLK  158 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~  158 (393)
                      -.|++.+.|....+.+.-++.  |..|..++..+++   .+..|.........|...|.+      ..++..+.. -|..
T Consensus        56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk---ylRYF~GH~~~V~sL~~sP~~------d~FlS~S~D~tvrL  126 (311)
T KOG1446|consen   56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK---YLRYFPGHKKRVNSLSVSPKD------DTFLSSSLDKTVRL  126 (311)
T ss_pred             cccccEEEEecCCceEEEccCCCCCceEEEEeecCc---eEEEcCCCCceEEEEEecCCC------CeEEecccCCeEEe
Confidence            367888777776655544443  5678888877765   133343344568899999877      666665544 5666


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC---CeEEEE--
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT---KETKVL--  230 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t---~~~~~~--  230 (393)
                      +|...   ...+  ...+.     .-.++||+|.++..-                 ..+..|-.||...   |-.+.+  
T Consensus       127 WDlR~~~cqg~l--~~~~~-----pi~AfDp~GLifA~~-----------------~~~~~IkLyD~Rs~dkgPF~tf~i  182 (311)
T KOG1446|consen  127 WDLRVKKCQGLL--NLSGR-----PIAAFDPEGLIFALA-----------------NGSELIKLYDLRSFDKGPFTTFSI  182 (311)
T ss_pred             eEecCCCCceEE--ecCCC-----cceeECCCCcEEEEe-----------------cCCCeEEEEEecccCCCCceeEcc
Confidence            77542   1111  12222     245899999776653                 2333677777532   222222  


Q ss_pred             e-cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe-cCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          231 V-SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI-KGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       231 ~-~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~-~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      . .....-+.+.+++||+.++++.. .+-++.++- +|......+... +....|-.-++.+||.+.++....
T Consensus       183 ~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~-~~~~~~~~a~ftPds~Fvl~gs~d  253 (311)
T KOG1446|consen  183 TDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYP-NAGNLPLSATFTPDSKFVLSGSDD  253 (311)
T ss_pred             CCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeecc-CCCCcceeEEECCCCcEEEEecCC
Confidence            1 22445688999999999988765 455666553 232222222111 222356567788999988876653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.99  E-value=0.0082  Score=54.42  Aligned_cols=184  Identities=18%  Similarity=0.218  Sum_probs=101.4

Q ss_pred             EECCCCCCCCceEEEEEeCCCceEEEeC-CceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccC
Q 016199          134 AFANSDPDADRITMIVADAYKGLLKISG-NSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGK  212 (393)
Q Consensus       134 ~~d~~G~~~~~~~L~v~~~~~gl~~id~-~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~  212 (393)
                      ....+|      .+|+++..+.|+.+|. +|........++. +..+  . ...++.+|+..                  
T Consensus        32 ~~~~~~------~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~--~-~~~~~~v~v~~------------------   83 (238)
T PF13360_consen   32 AVPDGG------RVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGA--P-VVDGGRVYVGT------------------   83 (238)
T ss_dssp             EEEETT------EEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSG--E-EEETTEEEEEE------------------
T ss_pred             EEEeCC------EEEEEcCCCEEEEEECCCCCEEEEeecccc-ccce--e-eeccccccccc------------------
Confidence            444567      9999988888999997 5533333333222 1111  1 33467888874                  


Q ss_pred             CCcEEEEEeCCCCeEEEE--ecC---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC---
Q 016199          213 PNGRLLSFDPVTKETKVL--VSD---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD---  284 (393)
Q Consensus       213 ~~g~l~~~d~~t~~~~~~--~~~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~---  284 (393)
                      ..+.|+++|..+|+..--  ...   ...........+++.+|+... .+.|+.++++.   |+. .+..... .|.   
T Consensus        84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~t---G~~-~w~~~~~-~~~~~~  157 (238)
T PF13360_consen   84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKT---GKL-LWKYPVG-EPRGSS  157 (238)
T ss_dssp             TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTT---TEE-EEEEESS-TT-SS-
T ss_pred             ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCC---CcE-EEEeecC-CCCCCc
Confidence            234899999877765432  211   111112222233667777764 78899999742   222 1111111 111   


Q ss_pred             ---------eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCC
Q 016199          285 ---------NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDP  354 (393)
Q Consensus       285 ---------~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~  354 (393)
                               +-.+-.+|.++++...+                                   .++.+|. .|+.+.  ...
T Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~g-----------------------------------~~~~~d~~tg~~~w--~~~  200 (238)
T PF13360_consen  158 PISSFSDINGSPVISDGRVYVSSGDG-----------------------------------RVVAVDLATGEKLW--SKP  200 (238)
T ss_dssp             -EEEETTEEEEEECCTTEEEEECCTS-----------------------------------SEEEEETTTTEEEE--EEC
T ss_pred             ceeeecccccceEEECCEEEEEcCCC-----------------------------------eEEEEECCCCCEEE--Eec
Confidence                     11122345777766532                                   2666675 455443  222


Q ss_pred             CCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCC
Q 016199          355 EMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       355 ~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                      ...........++.||+++ ....|..+|++....
T Consensus       201 ~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  201 ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKV  234 (238)
T ss_dssp             SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred             CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence            1112222567889999998 789999999977643

...

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.99  E-value=0.0032  Score=63.57  Aligned_cols=156  Identities=16%  Similarity=0.243  Sum_probs=105.0

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LL  157 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~  157 (393)
                      .+...+-.+++|.++|+.+..++.|+.|..|+.....  ...+.+.........++|.++|      ++++.....+ +.
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~~~~l~gH~~~v~~~~f~p~g------~~i~Sgs~D~tvr  271 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RNLKTLKGHSTYVTSVAFSPDG------NLLVSGSDDGTVR  271 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eEEEEecCCCCceEEEEecCCC------CEEEEecCCCcEE
Confidence            4555667779999999988888889999999883221  1144444444567899999999      7766655555 55


Q ss_pred             EEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE--EEec
Q 016199          158 KISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK--VLVS  232 (393)
Q Consensus       158 ~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~--~~~~  232 (393)
                      .+|..+   ...+....     ..+.++++.++|+++++.                 ...+.|..||..++...  ....
T Consensus       272 iWd~~~~~~~~~l~~hs-----~~is~~~f~~d~~~l~s~-----------------s~d~~i~vwd~~~~~~~~~~~~~  329 (456)
T KOG0266|consen  272 IWDVRTGECVRKLKGHS-----DGISGLAFSPDGNLLVSA-----------------SYDGTIRVWDLETGSKLCLKLLS  329 (456)
T ss_pred             EEeccCCeEEEeeeccC-----CceEEEEECCCCCEEEEc-----------------CCCccEEEEECCCCceeeeeccc
Confidence            567654   33343222     235688999999877764                 33567899999988842  2333


Q ss_pred             CccCC---CcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          233 DLYFA---NGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       233 ~l~~~---ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +...+   .-+.++|++++++.. ..++.+..|++.
T Consensus       330 ~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~  364 (456)
T KOG0266|consen  330 GAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLR  364 (456)
T ss_pred             CCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEcc
Confidence            33333   788999999877554 445667777775

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.93  E-value=0.0021  Score=59.07  Aligned_cols=151  Identities=14%  Similarity=0.146  Sum_probs=96.5

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ..-|+|++-.|  .||.=+. ++..+.+|.++-+   ....+.- .+.-=||+.|.+       .||+.|....|+.+|+
T Consensus        90 ~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~---~~~~~~y-~~EGWGLt~dg~-------~Li~SDGS~~L~~~dP  156 (264)
T PF05096_consen   90 YFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK---KIGTFPY-PGEGWGLTSDGK-------RLIMSDGSSRLYFLDP  156 (264)
T ss_dssp             --EEEEEEETT--EEEEEESSSSEEEEEETTTTE---EEEEEE--SSS--EEEECSS-------CEEEE-SSSEEEEE-T
T ss_pred             ccceeEEEECC--EEEEEEecCCeEEEEccccce---EEEEEec-CCcceEEEcCCC-------EEEEECCccceEEECC
Confidence            45677877743  5877665 7788889987643   1333322 345568887643       6999998889999999


Q ss_pred             Cc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--C---
Q 016199          162 NS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--D---  233 (393)
Q Consensus       162 ~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~---  233 (393)
                      +.   ...+.-..++.+....|-+... +|.||.-.-                 .+..|.++||.+|++....+  +   
T Consensus       157 ~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW-----------------~td~I~~Idp~tG~V~~~iDls~L~~  218 (264)
T PF05096_consen  157 ETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW-----------------QTDRIVRIDPETGKVVGWIDLSGLRP  218 (264)
T ss_dssp             TT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET-----------------TSSEEEEEETTT-BEEEEEE-HHHHH
T ss_pred             cccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC-----------------CCCeEEEEeCCCCeEEEEEEhhHhhh
Confidence            77   2233223456777777888765 788887641                 23589999999999876532  1   


Q ss_pred             -----------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          234 -----------LYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       234 -----------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                                 ...-||||.+++.+.+||+.-.=.++++..+
T Consensus       219 ~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  219 EVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             HHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             cccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence                       1246999999999999999865567777665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.90  E-value=0.0086  Score=54.26  Aligned_cols=172  Identities=13%  Similarity=0.120  Sum_probs=90.4

Q ss_pred             EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe-CCceEEE
Q 016199           89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS-GNSTVLL  167 (393)
Q Consensus        89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id-~~g~~~l  167 (393)
                      ++..++ .+|+++.++.|++++..+++    ...-....+.......-.++      .+|++...+.|+.+| .+|....
T Consensus        32 ~~~~~~-~v~~~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~------~v~v~~~~~~l~~~d~~tG~~~W  100 (238)
T PF13360_consen   32 AVPDGG-RVYVASGDGNLYALDAKTGK----VLWRFDLPGPISGAPVVDGG------RVYVGTSDGSLYALDAKTGKVLW  100 (238)
T ss_dssp             EEEETT-EEEEEETTSEEEEEETTTSE----EEEEEECSSCGGSGEEEETT------EEEEEETTSEEEEEETTTSCEEE
T ss_pred             EEEeCC-EEEEEcCCCEEEEEECCCCC----EEEEeeccccccceeeeccc------ccccccceeeeEecccCCcceee
Confidence            343344 69999999999999987664    22222222222222233456      899997666799999 4562222


Q ss_pred             e-ecc--CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC-------
Q 016199          168 T-DEA--EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA-------  237 (393)
Q Consensus       168 ~-~~~--~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~-------  237 (393)
                      . ...  +...........++ ++.+|++.                  ..+.|+.+|+++|+..-.... ..+       
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~  160 (238)
T PF13360_consen  101 SIYLTSSPPAGVRSSSSPAVD-GDRLYVGT------------------SSGKLVALDPKTGKLLWKYPV-GEPRGSSPIS  160 (238)
T ss_dssp             EEEE-SSCTCSTB--SEEEEE-TTEEEEEE------------------TCSEEEEEETTTTEEEEEEES-STT-SS--EE
T ss_pred             eeccccccccccccccCceEe-cCEEEEEe------------------ccCcEEEEecCCCcEEEEeec-CCCCCCccee
Confidence            2 111  11111112233333 45677774                  356899999998876322211 111       


Q ss_pred             -----CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEE
Q 016199          238 -----NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       238 -----ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~  298 (393)
                           ++-.+..++ .+|++.. .+++..+++..   ++.. +... ..-+.......++.+|++.
T Consensus       161 ~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~t---g~~~-w~~~-~~~~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  161 SFSDINGSPVISDG-RVYVSSG-DGRVVAVDLAT---GEKL-WSKP-ISGIYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             EETTEEEEEECCTT-EEEEECC-TSSEEEEETTT---TEEE-EEEC-SS-ECECEECCCTEEEEEE
T ss_pred             eecccccceEEECC-EEEEEcC-CCeEEEEECCC---CCEE-EEec-CCCccCCceeeCCEEEEEe
Confidence                 122233345 7877765 44566667643   3322 3222 2223333344566788877

...

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.90  E-value=0.0068  Score=54.53  Aligned_cols=182  Identities=16%  Similarity=0.129  Sum_probs=110.9

Q ss_pred             EEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCCc
Q 016199           97 IYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEGQ  174 (393)
Q Consensus        97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g~  174 (393)
                      |..+..|..|..|...++.   ....+.+..+..+.|.+.+++      +.+++.....|..+|.+.  ...+. .+++.
T Consensus        13 LvsA~YDhTIRfWqa~tG~---C~rTiqh~dsqVNrLeiTpdk------~~LAaa~~qhvRlyD~~S~np~Pv~-t~e~h   82 (311)
T KOG0315|consen   13 LVSAGYDHTIRFWQALTGI---CSRTIQHPDSQVNRLEITPDK------KDLAAAGNQHVRLYDLNSNNPNPVA-TFEGH   82 (311)
T ss_pred             EEeccCcceeeeeehhcCe---EEEEEecCccceeeEEEcCCc------chhhhccCCeeEEEEccCCCCCcee-EEecc
Confidence            4444567788877766654   244455556778899999998      777776677788887654  11221 23343


Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeC
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~  254 (393)
                      . ..+..+.+..||+-..+.                 +..|.+-.+|...-............|.|.+.|+...|++++.
T Consensus        83 ~-kNVtaVgF~~dgrWMyTg-----------------seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq  144 (311)
T KOG0315|consen   83 T-KNVTAVGFQCDGRWMYTG-----------------SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ  144 (311)
T ss_pred             C-CceEEEEEeecCeEEEec-----------------CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC
Confidence            2 345677788888644442                 4456777788765333333333455689999999877877664


Q ss_pred             CCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC-cchhhhhh
Q 016199          255 SMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE-FSTYWDLA  309 (393)
Q Consensus       255 ~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~-r~~~~~~~  309 (393)
                       ++.|..+|+..+..  ...++....-.-..+.+++||.+.+|.+.- +--.|+++
T Consensus       145 -sg~irvWDl~~~~c--~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  145 -SGNIRVWDLGENSC--THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             -CCcEEEEEccCCcc--ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence             78899999854311  111221111123557788888887776533 22344443

>PTZ00421 coronin; Provisional

Probab=97.86  E-value=0.031  Score=56.91  Aligned_cols=160  Identities=11%  Similarity=0.056  Sum_probs=93.7

Q ss_pred             CCCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCc----ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           83 KGPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPAD----SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        83 ~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~----~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      ..-.+++|+| +++.|.+++.|+.|..|+.......    .....+.........+++.+++.    +.|..+..++-|.
T Consensus        76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~----~iLaSgs~DgtVr  151 (493)
T PTZ00421         76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM----NVLASAGADMVVN  151 (493)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC----CEEEEEeCCCEEE
Confidence            3345789998 7778889999999999987643200    00222222334577899998641    0344444444467


Q ss_pred             EEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc--c
Q 016199          158 KISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL--Y  235 (393)
Q Consensus       158 ~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l--~  235 (393)
                      .+|.+..+.+. ...+. ...+.++++.++|.+.++.                 ...+.|..||+.+++........  .
T Consensus       152 IWDl~tg~~~~-~l~~h-~~~V~sla~spdG~lLatg-----------------s~Dg~IrIwD~rsg~~v~tl~~H~~~  212 (493)
T PTZ00421        152 VWDVERGKAVE-VIKCH-SDQITSLEWNLDGSLLCTT-----------------SKDKKLNIIDPRDGTIVSSVEAHASA  212 (493)
T ss_pred             EEECCCCeEEE-EEcCC-CCceEEEEEECCCCEEEEe-----------------cCCCEEEEEECCCCcEEEEEecCCCC
Confidence            77865411111 11111 1236688999999877763                 34567889999876643222211  1


Q ss_pred             CCCcEEEcCCCCEEEEEeC---CCCeEEEEEec
Q 016199          236 FANGVVLSPDQTHLVYCET---SMRRCRKFYIK  265 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~---~~~ri~~~~~~  265 (393)
                      ....+.+.+++..++.+..   ..+.|..||+.
T Consensus       213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            2234566777766655442   24678888875

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.001  Score=61.60  Aligned_cols=229  Identities=14%  Similarity=0.240  Sum_probs=124.4

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc-----eeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS-----LVHNWINTGGRPLGIAFANSDPDADRITMIVADAY  153 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~-----~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~  153 (393)
                      -|.-..||+..|+|||+.|..|+.||-|-.|+--++...+     ....+........+|.|.+|-      ..+...+.
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs------EMlAsGsq  283 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS------EMLASGSQ  283 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH------HHhhccCc
Confidence            3555789999999999988889999988888765544110     011222223456788888776      55554444


Q ss_pred             Cc---eEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEe-CCCCe-E
Q 016199          154 KG---LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFD-PVTKE-T  227 (393)
Q Consensus       154 ~g---l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d-~~t~~-~  227 (393)
                      .|   ++++...- .+.+    +......+..+.++.|+.-.++.                 + .....|+. .++|+ +
T Consensus       284 DGkIKvWri~tG~ClRrF----drAHtkGvt~l~FSrD~SqiLS~-----------------s-fD~tvRiHGlKSGK~L  341 (508)
T KOG0275|consen  284 DGKIKVWRIETGQCLRRF----DRAHTKGVTCLSFSRDNSQILSA-----------------S-FDQTVRIHGLKSGKCL  341 (508)
T ss_pred             CCcEEEEEEecchHHHHh----hhhhccCeeEEEEccCcchhhcc-----------------c-ccceEEEeccccchhH
Confidence            44   33443211 2111    11111224566777777433331                 1 11233332 33443 3


Q ss_pred             EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-CeEEECCCC-CEEEEEecCcchh
Q 016199          228 KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-DNIRYDGEG-HYLIALATEFSTY  305 (393)
Q Consensus       228 ~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-~~i~~d~~G-~lwva~~~~r~~~  305 (393)
                      ..+.....+.|...+++||..+ ++.+..+.+-.|+.+...  -...|......+| +++..-++. .-+|.++..    
T Consensus       342 KEfrGHsSyvn~a~ft~dG~~i-isaSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs----  414 (508)
T KOG0275|consen  342 KEFRGHSSYVNEATFTDDGHHI-ISASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS----  414 (508)
T ss_pred             HHhcCccccccceEEcCCCCeE-EEecCCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCC----
Confidence            3344456788999999999765 566678888888754211  1112211101122 233332222 234444433    


Q ss_pred             hhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC---CCccEEEE-EeCCEEEEE
Q 016199          306 WDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAI-KIGDHLYCG  372 (393)
Q Consensus       306 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~---~~~~~~~~-~~~g~Lyig  372 (393)
                                                    +.|+.++-+|++++++..+.   -.++++.. +.+..+|.-
T Consensus       415 ------------------------------ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci  455 (508)
T KOG0275|consen  415 ------------------------------NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI  455 (508)
T ss_pred             ------------------------------CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence                                          46888999999999998654   23333333 344556655

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.83  E-value=0.039  Score=59.71  Aligned_cols=156  Identities=10%  Similarity=0.048  Sum_probs=88.7

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc-----eeeeeecCCCceeeeEECCC-CCCCCceEEEEEeCCCceEE
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS-----LVHNWINTGGRPLGIAFANS-DPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~-----~~~~~~~~~~~p~gl~~d~~-G~~~~~~~L~v~~~~~gl~~  158 (393)
                      -.+++|+++|+.+.++..++.|..|+........     ....+. ......++++.+. +     ..|..+...+-|..
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~-----~~las~~~Dg~v~l  559 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIK-----SQVASSNFEGVVQV  559 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCC-----CEEEEEeCCCeEEE
Confidence            3458899999988888889999999865321000     001111 1233567777653 4     13444443444566


Q ss_pred             EeCCceEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          159 ISGNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       159 id~~g~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      +|....+.+. ...+.. ..+.++++++ +|.++++.                 ...+.|..||..++............
T Consensus       560 Wd~~~~~~~~-~~~~H~-~~V~~l~~~p~~~~~L~Sg-----------------s~Dg~v~iWd~~~~~~~~~~~~~~~v  620 (793)
T PLN00181        560 WDVARSQLVT-EMKEHE-KRVWSIDYSSADPTLLASG-----------------SDDGSVKLWSINQGVSIGTIKTKANI  620 (793)
T ss_pred             EECCCCeEEE-EecCCC-CCEEEEEEcCCCCCEEEEE-----------------cCCCEEEEEECCCCcEEEEEecCCCe
Confidence            6765411111 112211 3366888986 67776663                 34567888888766443222222334


Q ss_pred             CcEEEc-CCCCEEEEEeCCCCeEEEEEecC
Q 016199          238 NGVVLS-PDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       238 ngi~~s-~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ..+.+. ++|. .+++.+..+.|..|++..
T Consensus       621 ~~v~~~~~~g~-~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        621 CCVQFPSESGR-SLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             EEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence            556664 4564 556667788999999853

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.82  E-value=0.012  Score=56.83  Aligned_cols=183  Identities=11%  Similarity=0.144  Sum_probs=103.7

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eC-C
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SG-N  162 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~-~  162 (393)
                      -.++.+.++...+.+++.+-.|+.|.......   ........+...++...++|      ..++.....|-+.+ |. +
T Consensus       264 i~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---~~~~~~h~~~V~~ls~h~tg------eYllsAs~d~~w~Fsd~~~  334 (506)
T KOG0289|consen  264 ITSVKFHKDLDTVITASADEIIRVWSVPLSSE---PTSSRPHEEPVTGLSLHPTG------EYLLSASNDGTWAFSDISS  334 (506)
T ss_pred             EEEEEeccchhheeecCCcceEEeeccccccC---ccccccccccceeeeeccCC------cEEEEecCCceEEEEEccC
Confidence            33455556555555555555555554332210   11111223445788889999      77666666665554 32 3


Q ss_pred             c--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCc
Q 016199          163 S--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANG  239 (393)
Q Consensus       163 g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ng  239 (393)
                      |  ..+..+...+..   ....++.|||.|+.+-                 +..+-|-.||.+.+.... +...-.....
T Consensus       335 g~~lt~vs~~~s~v~---~ts~~fHpDgLifgtg-----------------t~d~~vkiwdlks~~~~a~Fpght~~vk~  394 (506)
T KOG0289|consen  335 GSQLTVVSDETSDVE---YTSAAFHPDGLIFGTG-----------------TPDGVVKIWDLKSQTNVAKFPGHTGPVKA  394 (506)
T ss_pred             CcEEEEEeeccccce---eEEeeEcCCceEEecc-----------------CCCceEEEEEcCCccccccCCCCCCceeE
Confidence            4  333322212222   3467899999887762                 556667778876554211 1112233467


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      |+|+.+| +.+++++..+.|..||+...  ..+..+.-....--..+.+|..|.+.+...
T Consensus       395 i~FsENG-Y~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  395 ISFSENG-YWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             EEeccCc-eEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEcCCCCeEEeec
Confidence            8999888 66677777788999999632  233434311100135588999999887653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.80  E-value=0.029  Score=51.71  Aligned_cols=192  Identities=14%  Similarity=0.131  Sum_probs=114.8

Q ss_pred             EEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc
Q 016199           76 KVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG  155 (393)
Q Consensus        76 ~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g  155 (393)
                      ++..|.+.--.++-|.+|+++|..++.||++..||.-+..   .+..+.-...-...-++.|.|      ++..+..-..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg------~~VAcGGLdN  119 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSG------NFVACGGLDN  119 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc---ceeEEecCceeEEEEEECCCC------CeEEecCcCc
Confidence            4556666667788899999999888999999999987643   133333333445677899999      7776643222


Q ss_pred             ---eEEEe-C--CceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          156 ---LLKIS-G--NSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       156 ---l~~id-~--~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                         ||.+. .  +|......+..|.. .+.....+-.|+.|.-+                  ++......+|.++++...
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT~------------------SGD~TCalWDie~g~~~~  180 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHT-GYLSCCRFLDDNHILTG------------------SGDMTCALWDIETGQQTQ  180 (343)
T ss_pred             eeEEEecccccccccceeeeeecCcc-ceeEEEEEcCCCceEec------------------CCCceEEEEEcccceEEE
Confidence               55554 2  33112222233322 23334455556666444                  445567788887776544


Q ss_pred             E-ecCccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          230 L-VSDLYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       230 ~-~~~l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      . .....-.-+++++| ++ ..|++......-..||+...  .-...|..+ ..--+.+++-++|.-+++..
T Consensus       181 ~f~GH~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~--~c~qtF~gh-esDINsv~ffP~G~afatGS  248 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSG--QCVQTFEGH-ESDINSVRFFPSGDAFATGS  248 (343)
T ss_pred             EecCCcccEEEEecCCCCC-CeEEecccccceeeeeccCc--ceeEeeccc-ccccceEEEccCCCeeeecC
Confidence            3 33334455677888 66 57888887777888887422  223344322 22245677777776555443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.79  E-value=0.011  Score=57.82  Aligned_cols=79  Identities=23%  Similarity=0.208  Sum_probs=58.8

Q ss_pred             EEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE
Q 016199          216 RLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL  295 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw  295 (393)
                      .|-.||..+++.+....++...-.+.+++||+.+.+++ .+..|+.++++..   ..+..-....++--++...++++ |
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididng---nv~~idkS~~~lItdf~~~~nsr-~  457 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNSR-W  457 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCC---CeeEecccccceeEEEEEcCCce-e
Confidence            68889999999999888888888899999999887766 5788999999643   33322222335556677877775 6


Q ss_pred             EEEe
Q 016199          296 IALA  299 (393)
Q Consensus       296 va~~  299 (393)
                      +|-.
T Consensus       458 iAYa  461 (668)
T COG4946         458 IAYA  461 (668)
T ss_pred             EEEe
Confidence            6655

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.76  E-value=0.0072  Score=62.00  Aligned_cols=190  Identities=19%  Similarity=0.247  Sum_probs=112.5

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCC-----C------------c-----------ceeeeeecCCCceeeeE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP-----A------------D-----------SLVHNWINTGGRPLGIA  134 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~-----~------------~-----------~~~~~~~~~~~~p~gl~  134 (393)
                      ++-.+..+++|+..|-.|..+-.|++|......     .            +           ...+......+...+..
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s  458 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS  458 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence            344455677777755566667777776655211     0            0           00011111234457888


Q ss_pred             ECCCCCCCCceEEEEEeCCCc-eEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCC
Q 016199          135 FANSDPDADRITMIVADAYKG-LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKP  213 (393)
Q Consensus       135 ~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~  213 (393)
                      |.|+.      ++++.-++.+ +..+..+...-++. ..|.. .-+.++.+.|.| .||+.++.              ..
T Consensus       459 FsPd~------rfLlScSED~svRLWsl~t~s~~V~-y~GH~-~PVwdV~F~P~G-yYFatas~--------------D~  515 (707)
T KOG0263|consen  459 FSPDR------RFLLSCSEDSSVRLWSLDTWSCLVI-YKGHL-APVWDVQFAPRG-YYFATASH--------------DQ  515 (707)
T ss_pred             ecccc------cceeeccCCcceeeeecccceeEEE-ecCCC-cceeeEEecCCc-eEEEecCC--------------Cc
Confidence            88887      7777656544 33334444111111 12322 225678899887 56665544              45


Q ss_pred             CcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC
Q 016199          214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH  293 (393)
Q Consensus       214 ~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~  293 (393)
                      +.+||..|. +.-.+.++..+.-.+.+.|.|+.. ...+++...++..|++.  ....++.|. +..+--..+++++.|+
T Consensus       516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~--~G~~VRiF~-GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVS--TGNSVRIFT-GHKGPVTALAFSPCGR  590 (707)
T ss_pred             eeeeeeccc-CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcC--CCcEEEEec-CCCCceEEEEEcCCCc
Confidence            668888886 356667777788888899999984 44666767777778774  223456664 4444345688999998


Q ss_pred             EEEEEec
Q 016199          294 YLIALAT  300 (393)
Q Consensus       294 lwva~~~  300 (393)
                      +.+....
T Consensus       591 ~LaSg~e  597 (707)
T KOG0263|consen  591 YLASGDE  597 (707)
T ss_pred             eEeeccc
Confidence            7765443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.75  E-value=0.014  Score=54.84  Aligned_cols=185  Identities=16%  Similarity=0.236  Sum_probs=104.5

Q ss_pred             EEEecCCCEEEEEe-----cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC------Cc-
Q 016199           88 LLYDAHSKLIYTGC-----EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY------KG-  155 (393)
Q Consensus        88 ia~d~~g~~L~~~~-----~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~------~g-  155 (393)
                      -+|++||++||+.-     ..|.|-.|+...+-  ..+..|...+-.|+.|.+.+||     +.|.|++.+      .| 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~--~ri~E~~s~GIGPHel~l~pDG-----~tLvVANGGI~Thpd~GR  128 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGY--RRIGEFPSHGIGPHELLLMPDG-----ETLVVANGGIETHPDSGR  128 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCc--EEEeEecCCCcChhhEEEcCCC-----CEEEEEcCCCccCcccCc
Confidence            56899999898753     24567788877321  1245555556689999999999     368888532      12 


Q ss_pred             -----------eEEEeC-Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199          156 -----------LLKISG-NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFD  221 (393)
Q Consensus       156 -----------l~~id~-~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d  221 (393)
                                 |..+|. +|  .+... ..+......+..++++.+|.+|++.        +|.-+-.+..+  -|..++
T Consensus       129 ~kLNl~tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~--------Q~qg~~~~~~P--Lva~~~  197 (305)
T PF07433_consen  129 AKLNLDTMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAM--------QYQGDPGDAPP--LVALHR  197 (305)
T ss_pred             eecChhhcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEE--------ecCCCCCccCC--eEEEEc
Confidence                       333322 22  11110 0111122346688999999999995        22211111111  233343


Q ss_pred             CCCCeEEEEecC-------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC--eEEECCCC
Q 016199          222 PVTKETKVLVSD-------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD--NIRYDGEG  292 (393)
Q Consensus       222 ~~t~~~~~~~~~-------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~--~i~~d~~G  292 (393)
                      .. +..+.+.-.       -.+.-.|+++.+++.+.++.--.+++..|+..   .+.   +....+ +||  |++...+|
T Consensus       198 ~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~---tg~---~~~~~~-l~D~cGva~~~~~  269 (305)
T PF07433_consen  198 RG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA---TGR---LLGSVP-LPDACGVAPTDDG  269 (305)
T ss_pred             CC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC---CCC---Eeeccc-cCceeeeeecCCc
Confidence            32 333333211       24567799999998888888878888888753   233   221111 444  56666666


Q ss_pred             CEEEEEe
Q 016199          293 HYLIALA  299 (393)
Q Consensus       293 ~lwva~~  299 (393)
                       ++++..
T Consensus       270 -f~~ssG  275 (305)
T PF07433_consen  270 -FLVSSG  275 (305)
T ss_pred             -eEEeCC
Confidence             555444

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.70  E-value=0.012  Score=57.02  Aligned_cols=168  Identities=14%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             EEecCCCEE-EEEecCC--eEEEEEcCCCCCcceeeeeecCC-CceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           89 LYDAHSKLI-YTGCEDG--WIKRVTLNDSPADSLVHNWINTG-GRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        89 a~d~~g~~L-~~~~~~g--~I~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      ++.++|+.| |.+..+|  .++.+++++++    ...+.... ....|....++.     +.+|.......|.++|.++ 
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~----i~QLTdg~g~~~~g~~~s~~~-----~~~~Yv~~~~~l~~vdL~T~  112 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE----ITQLTDGPGDNTFGGFLSPDD-----RALYYVKNGRSLRRVDLDTL  112 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-E----EEE---SS-B-TTT-EE-TTS-----SEEEEEETTTEEEEEETTT-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCE----EEECccCCCCCccceEEecCC-----CeEEEEECCCeEEEEECCcC
Confidence            367788654 5555454  79999999887    66665422 223355555554     1554333567899999887 


Q ss_pred             -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccch-----hhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYL-----REYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~-----~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                       .+.+....++-..  --......|++.+++....+...     ..++.++++.....+|+++|.+||+.+.+...-...
T Consensus       113 e~~~vy~~p~~~~g--~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl  190 (386)
T PF14583_consen  113 EERVVYEVPDDWKG--YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL  190 (386)
T ss_dssp             -EEEEEE--TTEEE--EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred             cEEEEEECCccccc--ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence             3333322222111  01223456788777754332221     235567778888889999999999999887766666


Q ss_pred             CcEEEcCCC-CEEEEEeCC-----CCeEEEEEecCC
Q 016199          238 NGVVLSPDQ-THLVYCETS-----MRRCRKFYIKGK  267 (393)
Q Consensus       238 ngi~~s~dg-~~l~v~~~~-----~~ri~~~~~~g~  267 (393)
                      +-+.++|-. ..|-+|..+     ..||+..+.+|.
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence            677777643 345555543     458888887654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.69  E-value=0.0036  Score=60.61  Aligned_cols=176  Identities=10%  Similarity=0.148  Sum_probs=106.1

Q ss_pred             eEEEecCCC-EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce----eeeEECCCCCCCCceEE-EEEeCCCceEEEe
Q 016199           87 DLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP----LGIAFANSDPDADRITM-IVADAYKGLLKIS  160 (393)
Q Consensus        87 ~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p----~gl~~d~~G~~~~~~~L-~v~~~~~gl~~id  160 (393)
                      +.+|.++|. +++++++..-+|.||+.+.+    +..+....+.+    .-..+.+++      ++ .++...+-|..+.
T Consensus       262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak----~~k~~~~~g~e~~~~e~FeVShd~------~fia~~G~~G~I~lLh  331 (514)
T KOG2055|consen  262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAK----VTKLKPPYGVEEKSMERFEVSHDS------NFIAIAGNNGHIHLLH  331 (514)
T ss_pred             eeeecCCCceEEEecccceEEEEeeccccc----cccccCCCCcccchhheeEecCCC------CeEEEcccCceEEeeh
Confidence            367888998 88888888889999998766    55554433332    344556777      43 3332233366665


Q ss_pred             CCceEEEe-eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-Eec-CccC
Q 016199          161 GNSTVLLT-DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVS-DLYF  236 (393)
Q Consensus       161 ~~g~~~l~-~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~-~l~~  236 (393)
                      ..+.+.+. -..+|.    +.+++++.|| .||++                  .++|.||.+|........ ..+ +...
T Consensus       332 akT~eli~s~KieG~----v~~~~fsSdsk~l~~~------------------~~~GeV~v~nl~~~~~~~rf~D~G~v~  389 (514)
T KOG2055|consen  332 AKTKELITSFKIEGV----VSDFTFSSDSKELLAS------------------GGTGEVYVWNLRQNSCLHRFVDDGSVH  389 (514)
T ss_pred             hhhhhhhheeeeccE----EeeEEEecCCcEEEEE------------------cCCceEEEEecCCcceEEEEeecCccc
Confidence            44311111 122332    4578888998 46665                  456789999987654332 232 3344


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC---cceeeeeccCCCCCCeEEECCCCCEE
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA---GRVEKFIETLPGLPDNIRYDGEGHYL  295 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~---~~~~~~~~~l~g~P~~i~~d~~G~lw  295 (393)
                      -..+|++.+|+ ++.+.+..+-+..|+.+....   -+...-++++..--+.+.+.+++.+.
T Consensus       390 gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  390 GTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             eeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            56688889996 567777778888898653211   11111223554445678888888865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.69  E-value=0.0016  Score=67.21  Aligned_cols=185  Identities=14%  Similarity=0.198  Sum_probs=114.9

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      ..-.+++++.=|+..++|+..|.|-+|+.+.+--   ...|.   ...+...|++.|.-+      ++.|+....|+..+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---r~sf~~~~ah~~~V~gla~D~~n------~~~vsa~~~Gilkf  519 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---RKSFGDSPAHKGEVTGLAVDGTN------RLLVSAGADGILKF  519 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCee---ecccccCccccCceeEEEecCCC------ceEEEccCcceEEE
Confidence            3445688888899999999999999999987641   22331   234557899999988      88888788887765


Q ss_pred             -eCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccCC
Q 016199          160 -SGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYFA  237 (393)
Q Consensus       160 -d~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~~  237 (393)
                       |-++...+....-+.   .+..+.......+++.-                 -..-.|..||..|.++... -......
T Consensus       520 w~f~~k~l~~~l~l~~---~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kvvR~f~gh~nri  579 (910)
T KOG1539|consen  520 WDFKKKVLKKSLRLGS---SITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKVVREFWGHGNRI  579 (910)
T ss_pred             EecCCcceeeeeccCC---Ccceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhhhHHhhccccce
Confidence             544411221111111   12233333332222210                 1123588899877655433 2335568


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +.+++|+||++|.. .+..+.|..||+-..  .....+.  .+.-+-++..+++|.+....+..
T Consensus       580 td~~FS~DgrWlis-asmD~tIr~wDlpt~--~lID~~~--vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  580 TDMTFSPDGRWLIS-ASMDSTIRTWDLPTG--TLIDGLL--VDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             eeeEeCCCCcEEEE-eecCCcEEEEeccCc--ceeeeEe--cCCcceeeEECCCCCEEEEEEec
Confidence            99999999987755 456789999998421  1222222  22235678888999888776654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.68  E-value=0.012  Score=53.36  Aligned_cols=64  Identities=19%  Similarity=0.213  Sum_probs=45.2

Q ss_pred             EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCC-Cc-eeeeEECC-CCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG-GR-PLGIAFAN-SDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~-~~-p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ..|.+++.+|.|++|+..+.+|+.+..     -.|...+ +. -.+-+.++ ++      .||++...+.++.++++.
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~-----cVykskcgG~~f~sP~i~~g~~------sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYG-----CVYKSKCGGGTFVSPVIAPGDG------SLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccc-----eEEecccCCceeccceecCCCc------eEEEEeccceEEEEccCC
Confidence            478888999999999999999987642     2222222 22 23445555 77      899998888888887654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.67  E-value=0.0046  Score=56.86  Aligned_cols=158  Identities=16%  Similarity=0.222  Sum_probs=102.4

Q ss_pred             cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE--EecCccCCCcEEEcCCCCEEEEEeC
Q 016199          177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV--LVSDLYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~--~~~~l~~~ngi~~s~dg~~l~v~~~  254 (393)
                      .|..|+.+..+|.||-++..               .+...|.++|++++++..  -...-.|.-|+++..|  .+|.-..
T Consensus        45 aFTQGL~~~~~g~LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW  107 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW  107 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred             ccCccEEecCCCEEEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence            56789999889999998632               234579999999987643  3455678899998854  6888888


Q ss_pred             CCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCC
Q 016199          255 SMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKS  334 (393)
Q Consensus       255 ~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  334 (393)
                      ..+..++||.+.  ......|.  .++-.-|++.|. ..+|++....                                 
T Consensus       108 k~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS~---------------------------------  149 (264)
T PF05096_consen  108 KEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDG-KRLIMSDGSS---------------------------------  149 (264)
T ss_dssp             SSSEEEEEETTT--TEEEEEEE---SSS--EEEECS-SCEEEE-SSS---------------------------------
T ss_pred             cCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCC-CEEEEECCcc---------------------------------
Confidence            889999999753  23333342  334456788763 3588876643                                 


Q ss_pred             CceEEEECCC-CcEEEEeeC--CC--CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCCC
Q 016199          335 SSGVFIVDLD-GKPIAHYYD--PE--MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARA  391 (393)
Q Consensus       335 ~~~v~~~d~~-g~~~~~~~d--~~--~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~~  391 (393)
                        .|..+||+ -++...+.-  ..  ...+....-.+|.||.--+..+.|.++|++....+.
T Consensus       150 --~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  150 --RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             --EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred             --ceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence              47888874 455555442  11  444445555789999999999999999987765543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.66  E-value=0.0085  Score=56.93  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=58.6

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC-----CCCCCCCceEEEEEeCC
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA-----NSDPDADRITMIVADAY  153 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d-----~~G~~~~~~~L~v~~~~  153 (393)
                      .|....--+++++|||+.|-.|+.+|.|..|++++++-.  -..+........+|++.     +..      ++++....
T Consensus       154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~------r~las~sk  225 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--GRALRGHKKWITALAWEPLHLVPPC------RRLASSSK  225 (480)
T ss_pred             cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc--cccccCcccceeEEeecccccCCCc------cceecccC
Confidence            344566778999999998888899999999999876410  11111111224455554     344      44444333


Q ss_pred             C-ceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEE
Q 016199          154 K-GLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFT  193 (393)
Q Consensus       154 ~-gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~t  193 (393)
                      . .+...|... ..++.  ..|.. ..+..+....+|.||-+
T Consensus       226 Dg~vrIWd~~~~~~~~~--lsgHT-~~VTCvrwGG~gliySg  264 (480)
T KOG0271|consen  226 DGSVRIWDTKLGTCVRT--LSGHT-ASVTCVRWGGEGLIYSG  264 (480)
T ss_pred             CCCEEEEEccCceEEEE--eccCc-cceEEEEEcCCceEEec
Confidence            3 366667654 22221  11211 22446666677777766

>PRK13684 Ycf48-like protein; Provisional

Probab=97.65  E-value=0.065  Score=51.80  Aligned_cols=178  Identities=11%  Similarity=0.067  Sum_probs=85.8

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC----CCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT----GGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~----~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      ...+|+|.++.+ .|+....|.|++=.-.+..    ++.....    ......+.+.. +      ..|++...+.|++-
T Consensus        47 ~l~~v~F~d~~~-g~avG~~G~il~T~DgG~t----W~~~~~~~~~~~~~l~~v~~~~-~------~~~~~G~~g~i~~S  114 (334)
T PRK13684         47 NLLDIAFTDPNH-GWLVGSNRTLLETNDGGET----WEERSLDLPEENFRLISISFKG-D------EGWIVGQPSLLLHT  114 (334)
T ss_pred             ceEEEEEeCCCc-EEEEECCCEEEEEcCCCCC----ceECccCCcccccceeeeEEcC-C------cEEEeCCCceEEEE
Confidence            344577775554 5544456777764433333    4443211    12245677764 3      46766444445554


Q ss_pred             eCCce--EEEee--ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc-
Q 016199          160 SGNST--VLLTD--EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL-  234 (393)
Q Consensus       160 d~~g~--~~l~~--~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l-  234 (393)
                      +-.|.  +.+..  ...+.    +..+....++.+|+.                  ...|.|++-+-.++..+.+..+. 
T Consensus       115 ~DgG~tW~~~~~~~~~~~~----~~~i~~~~~~~~~~~------------------g~~G~i~~S~DgG~tW~~~~~~~~  172 (334)
T PRK13684        115 TDGGKNWTRIPLSEKLPGS----PYLITALGPGTAEMA------------------TNVGAIYRTTDGGKNWEALVEDAA  172 (334)
T ss_pred             CCCCCCCeEccCCcCCCCC----ceEEEEECCCcceee------------------eccceEEEECCCCCCceeCcCCCc
Confidence            33332  22211  11121    223333334455555                  23466777765545555544332 


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ...+++.+.+++..+.+.  .++.+++-.-++.  ...+...........++.+.++|++|+...
T Consensus       173 g~~~~i~~~~~g~~v~~g--~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~  233 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS--SRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLAR  233 (334)
T ss_pred             ceEEEEEECCCCeEEEEe--CCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEec
Confidence            335678888887544333  3466666421221  111111111112245677888899988755

>PTZ00420 coronin; Provisional

Probab=97.63  E-value=0.092  Score=54.18  Aligned_cols=159  Identities=13%  Similarity=0.022  Sum_probs=92.7

Q ss_pred             CccCCCceEEEecC-CCEEEEEecCCeEEEEEcCCCCCc-----ceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeC
Q 016199           80 GVLKGPEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPAD-----SLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADA  152 (393)
Q Consensus        80 g~~~~Pe~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~-----~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~  152 (393)
                      |......+++|+|+ ++.|.+++.|+.|..|+...+...     .....+.........+++++++      . ++++..
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g------~~iLaSgS  145 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN------YYIMCSSG  145 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC------CeEEEEEe
Confidence            33345667899986 677888899999999997643100     0011222234567889999988      4 443333


Q ss_pred             -CCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          153 -YKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       153 -~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                       ++.|..+|... .....-...    ..+..+.++++|.++++.                 ...+.|..||+.+++...-
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~~~----~~V~SlswspdG~lLat~-----------------s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQINMP----KKLSSLKWNIKGNLLSGT-----------------CVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEecC----CcEEEEEECCCCCEEEEE-----------------ecCCEEEEEECCCCcEEEE
Confidence             44466778654 211111111    235688999999887763                 2345788999987754332


Q ss_pred             ecC-ccCCCc-----EEEcCCCCEEEEEeCCC---CeEEEEEec
Q 016199          231 VSD-LYFANG-----VVLSPDQTHLVYCETSM---RRCRKFYIK  265 (393)
Q Consensus       231 ~~~-l~~~ng-----i~~s~dg~~l~v~~~~~---~ri~~~~~~  265 (393)
                      ... ....+.     ..+++|++.++.+....   ..|..|++.
T Consensus       205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            211 111111     12357877666655443   358888875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=97.60  E-value=0.019  Score=54.25  Aligned_cols=159  Identities=16%  Similarity=0.114  Sum_probs=94.1

Q ss_pred             EecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCc
Q 016199           77 VGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKG  155 (393)
Q Consensus        77 l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g  155 (393)
                      +..|.+.+-.++++||.+..+-+|+.|+.|-.||..+++    .+.... .-....++++.+--+     .++-+..+.-
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~----LkltltGhi~~vr~vavS~rHp-----YlFs~gedk~  216 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ----LKLTLTGHIETVRGVAVSKRHP-----YLFSAGEDKQ  216 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe----EEEeecchhheeeeeeecccCc-----eEEEecCCCe
Confidence            346777888999999987655566779999999999876    332221 234567888876542     3444433444


Q ss_pred             eEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-c
Q 016199          156 LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-L  234 (393)
Q Consensus       156 l~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l  234 (393)
                      |-.+|....+++. .+-|. +..+..++..|.-++.++.                 .....+..+|..++.....+.+ -
T Consensus       217 VKCwDLe~nkvIR-~YhGH-lS~V~~L~lhPTldvl~t~-----------------grDst~RvWDiRtr~~V~~l~GH~  277 (460)
T KOG0285|consen  217 VKCWDLEYNKVIR-HYHGH-LSGVYCLDLHPTLDVLVTG-----------------GRDSTIRVWDIRTRASVHVLSGHT  277 (460)
T ss_pred             eEEEechhhhhHH-Hhccc-cceeEEEeccccceeEEec-----------------CCcceEEEeeecccceEEEecCCC
Confidence            6667765422221 12221 3345567777777777773                 2223455567766544333333 2


Q ss_pred             cCCCcEEEc-CCCCEEEEEeCCCCeEEEEEec
Q 016199          235 YFANGVVLS-PDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       235 ~~~ngi~~s-~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      ...+.+.+- -|++  +++.+..+.|..||+.
T Consensus       278 ~~V~~V~~~~~dpq--vit~S~D~tvrlWDl~  307 (460)
T KOG0285|consen  278 NPVASVMCQPTDPQ--VITGSHDSTVRLWDLR  307 (460)
T ss_pred             CcceeEEeecCCCc--eEEecCCceEEEeeec
Confidence            223334433 2442  3667778899999985

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.59  E-value=0.00085  Score=59.81  Aligned_cols=110  Identities=17%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             EecCCCEEEEEec----------CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCce--
Q 016199           90 YDAHSKLIYTGCE----------DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGL--  156 (393)
Q Consensus        90 ~d~~g~~L~~~~~----------~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl--  156 (393)
                      +||+|+ .|.|+.          .|.++++-+.. +    ++.+-..-+-++||+.|.+.     +.+|+.|+ ..-+  
T Consensus       116 vdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~~h-~----v~~i~~~v~IsNgl~Wd~d~-----K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  116 VDPDGR-YYGGTMADFGDDLEPIGGELYSWLAGH-Q----VELIWNCVGISNGLAWDSDA-----KKFYYIDSLNYEVDA  184 (310)
T ss_pred             cCCCCc-eeeeeeccccccccccccEEEEeccCC-C----ceeeehhccCCccccccccC-----cEEEEEccCceEEee
Confidence            788996 688873          24455554443 3    44444434568999999776     36788776 3345  


Q ss_pred             EEEeCC-c----eEEEeecc--CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          157 LKISGN-S----TVLLTDEA--EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       157 ~~id~~-g----~~~l~~~~--~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      +.+|-. |    ...+.+..  +...-..|+++++|.+|+||++.                 -..++|+++||.||++
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-----------------~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-----------------FNGGTVQKVDPTTGKI  245 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-----------------ecCcEEEEECCCCCcE
Confidence            333333 3    12222211  11122458999999999999996                 2357899999999875

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.59  E-value=0.043  Score=51.50  Aligned_cols=175  Identities=18%  Similarity=0.226  Sum_probs=97.1

Q ss_pred             cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe-CCc------------eEEEe--eccCCccccccccEEEcCCCc
Q 016199          125 NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS-GNS------------TVLLT--DEAEGQKFKLTDGVDVADDGM  189 (393)
Q Consensus       125 ~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id-~~g------------~~~l~--~~~~g~~~~~~~~l~~d~dG~  189 (393)
                      ....+|.|++.+++       +||++. ...|.++- .+.            .-.+.  ..+.|.  -.+|+|++ .++.
T Consensus        46 r~F~r~MGl~~~~~-------~l~~~t-~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGd--idiHdia~-~~~~  114 (335)
T TIGR03032        46 RTFPRPMGLAVSPQ-------SLTLGT-RYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGD--IDAHDLAL-GAGR  114 (335)
T ss_pred             eccCccceeeeeCC-------eEEEEE-cceeEEcccccccccccccCCCCCeEEeeeeeeeccC--cchhheee-cCCc
Confidence            33568999999865       599995 44566661 111            00010  011121  23688988 6778


Q ss_pred             EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC--------eEEEE-ecCccCCCcEEEcCCCCEEEEEeCCCCeE-
Q 016199          190 IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK--------ETKVL-VSDLYFANGVVLSPDQTHLVYCETSMRRC-  259 (393)
Q Consensus       190 l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~--------~~~~~-~~~l~~~ngi~~s~dg~~l~v~~~~~~ri-  259 (393)
                      +||.+.                 .-.-|-.+++.-.        -++.+ ..+-.+-||+|+. ||+--||+..+..-. 
T Consensus       115 l~fVNT-----------------~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~  176 (335)
T TIGR03032       115 LLFVNT-----------------LFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVA  176 (335)
T ss_pred             EEEEEC-----------------cceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCc
Confidence            998863                 2334555555321        11222 3345778999994 777788776543211 


Q ss_pred             --E---------EEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCC
Q 016199          260 --R---------KFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGM  328 (393)
Q Consensus       260 --~---------~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~  328 (393)
                        +         .+|+..     -+++++++. +|.+-+.- +|++|+.....                           
T Consensus       177 ~gWR~~~~~gG~vidv~s-----~evl~~GLs-mPhSPRWh-dgrLwvldsgt---------------------------  222 (335)
T TIGR03032       177 DGWREGRRDGGCVIDIPS-----GEVVASGLS-MPHSPRWY-QGKLWLLNSGR---------------------------  222 (335)
T ss_pred             ccccccccCCeEEEEeCC-----CCEEEcCcc-CCcCCcEe-CCeEEEEECCC---------------------------
Confidence              1         133321     133444443 56665553 69999987754                           


Q ss_pred             CCCCCCCceEEEECCC-CcEEEEeeCCC-CCccEEEEEeCCEEEEE
Q 016199          329 PPMGKSSSGVFIVDLD-GKPIAHYYDPE-MSLISSAIKIGDHLYCG  372 (393)
Q Consensus       329 ~~~~~~~~~v~~~d~~-g~~~~~~~d~~-~~~~~~~~~~~g~Lyig  372 (393)
                             +.+.++|++ |+......-+. ...+.+   .++.+++|
T Consensus       223 -------Gev~~vD~~~G~~e~Va~vpG~~rGL~f---~G~llvVg  258 (335)
T TIGR03032       223 -------GELGYVDPQAGKFQPVAFLPGFTRGLAF---AGDFAFVG  258 (335)
T ss_pred             -------CEEEEEcCCCCcEEEEEECCCCCcccce---eCCEEEEE
Confidence                   569999997 76655555444 222222   24555555

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.57  E-value=0.0066  Score=54.62  Aligned_cols=149  Identities=12%  Similarity=0.071  Sum_probs=98.6

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST  164 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~  164 (393)
                      -..+.|-...+.+..++.++.|..||..++.   .+..+ .....+..+-+..+|      +++....+.+|..+|++.+
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---~v~sL-~~~s~VtSlEvs~dG------~ilTia~gssV~Fwdaksf  215 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGT---EVQSL-EFNSPVTSLEVSQDG------RILTIAYGSSVKFWDAKSF  215 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCc---EEEEE-ecCCCCcceeeccCC------CEEEEecCceeEEeccccc
Confidence            3345555555556666778889999988765   13333 334567889999999      8777766777888888764


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecC-ccCCCcEEE
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSD-LYFANGVVL  242 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~-l~~~ngi~~  242 (393)
                      ..+... . .| ..++.-...|+..+|++-                 .....+|+||-.|++-... ..+ ......+.+
T Consensus       216 ~~lKs~-k-~P-~nV~SASL~P~k~~fVaG-----------------ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF  275 (334)
T KOG0278|consen  216 GLLKSY-K-MP-CNVESASLHPKKEFFVAG-----------------GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF  275 (334)
T ss_pred             cceeec-c-Cc-cccccccccCCCceEEec-----------------CcceEEEEEeccCCceeeecccCCCCceEEEEE
Confidence            333211 1 01 113344456777888883                 4456799999988864443 233 344588999


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEe
Q 016199          243 SPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      +||| .+|.+.+..+.|..|..
T Consensus       276 SPdG-E~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  276 SPDG-ELYASGSEDGTIRLWQT  296 (334)
T ss_pred             CCCC-ceeeccCCCceEEEEEe
Confidence            9999 58999988887766654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.55  E-value=0.0025  Score=62.01  Aligned_cols=190  Identities=11%  Similarity=0.140  Sum_probs=122.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ..-.++++..+|..+..++.|+.|..||.++++    ...-...+..|..+.+.+++.    +.+++|.....|..+|..
T Consensus       259 k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~----~~~~f~~~~~~~cvkf~pd~~----n~fl~G~sd~ki~~wDiR  330 (503)
T KOG0282|consen  259 KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ----VLSRFHLDKVPTCVKFHPDNQ----NIFLVGGSDKKIRQWDIR  330 (503)
T ss_pred             hhhhhhhccccCCeeeeeecceeeeeeccccce----EEEEEecCCCceeeecCCCCC----cEEEEecCCCcEEEEecc
Confidence            445668899999888888899999999999886    554445567789999998762    135555556678888864


Q ss_pred             ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ec-CccCCCcE
Q 016199          163 STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VS-DLYFANGV  240 (393)
Q Consensus       163 g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~-~l~~~ngi  240 (393)
                      ..+ +..++ +..+..+++|.+-++|.-+++.                 +..+.+..++-.......+ +. ....--.+
T Consensus       331 s~k-vvqeY-d~hLg~i~~i~F~~~g~rFiss-----------------SDdks~riWe~~~~v~ik~i~~~~~hsmP~~  391 (503)
T KOG0282|consen  331 SGK-VVQEY-DRHLGAILDITFVDEGRRFISS-----------------SDDKSVRIWENRIPVPIKNIADPEMHTMPCL  391 (503)
T ss_pred             chH-HHHHH-HhhhhheeeeEEccCCceEeee-----------------ccCccEEEEEcCCCccchhhcchhhccCcce
Confidence            311 11122 2234567889999999777774                 2223455555443332221 11 12333467


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeec-cCCCCCCeEEECCCCCEEEEEec
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGK-NAGRVEKFIE-TLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~-~~~~~~~~~~-~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      ++.|++. .+.+.+..++|..|..... +....+.|.. ..+|++..+.+++||++.+.-..
T Consensus       392 ~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds  452 (503)
T KOG0282|consen  392 TLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS  452 (503)
T ss_pred             ecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence            7888885 5678888999999886532 2222333331 24678889999999998776543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.53  E-value=0.068  Score=50.32  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=63.9

Q ss_pred             CCceeeeEECCCCCCCCceEEEEEeCCCc--eEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchh
Q 016199          127 GGRPLGIAFANSDPDADRITMIVADAYKG--LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLR  202 (393)
Q Consensus       127 ~~~p~gl~~d~~G~~~~~~~L~v~~~~~g--l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~  202 (393)
                      ..+.++++.+++.+     ...+..-.-|  ++.+|..+  ........++..|  --.-++++||++.++....     
T Consensus         4 P~RgH~~a~~p~~~-----~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF--yGHg~fs~dG~~LytTEnd-----   71 (305)
T PF07433_consen    4 PARGHGVAAHPTRP-----EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF--YGHGVFSPDGRLLYTTEND-----   71 (305)
T ss_pred             CccccceeeCCCCC-----eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE--ecCEEEcCCCCEEEEeccc-----
Confidence            45778888888441     3332223334  66778755  2222223334333  1123689999655553211     


Q ss_pred             hheehhcccCCCcEEEEEeCCCC--eEEEEecCccCCCcEEEcCCCCEEEEEeC
Q 016199          203 EYILDIFEGKPNGRLLSFDPVTK--ETKVLVSDLYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       203 ~~~~~~~e~~~~g~l~~~d~~t~--~~~~~~~~l~~~ngi~~s~dg~~l~v~~~  254 (393)
                            . .++.|.|-.||...+  ++.++.+.-.-|+-+.+.+||+.|+|++-
T Consensus        72 ------~-~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG  118 (305)
T PF07433_consen   72 ------Y-ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG  118 (305)
T ss_pred             ------c-CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence                  1 245688899998732  23334455566999999999999999863

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.49  E-value=0.073  Score=48.47  Aligned_cols=140  Identities=16%  Similarity=0.079  Sum_probs=78.4

Q ss_pred             CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeeccC
Q 016199           94 SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDEAE  172 (393)
Q Consensus        94 g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~  172 (393)
                      ...+|+|++.+++..+|++.+.    ...-...+.|..+-+.--.+      .+.++=..+++|.++-+. .+.......
T Consensus        23 kT~v~igSHs~~~~avd~~sG~----~~We~ilg~RiE~sa~vvgd------fVV~GCy~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGN----LIWEAILGVRIECSAIVVGD------FVVLGCYSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCc----EEeehhhCceeeeeeEEECC------EEEEEEccCcEEEEEecchhheeeeeeh
Confidence            3478999999999999998875    33333334554433332223      566665556788887544 222211111


Q ss_pred             CccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcEEEcCCCCEEE
Q 016199          173 GQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVVLSPDQTHLV  250 (393)
Q Consensus       173 g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi~~s~dg~~l~  250 (393)
                      +..-  . .-..|.++ .||.+                  +-++.+|.+|+++..-..-. -+...-.+-++.+-...||
T Consensus        93 ~~vk--~-~a~~d~~~glIycg------------------shd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly  151 (354)
T KOG4649|consen   93 ETVK--V-RAQCDFDGGLIYCG------------------SHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY  151 (354)
T ss_pred             hhhc--c-ceEEcCCCceEEEe------------------cCCCcEEEecccccceEEecccCCceeccceecCCCceEE
Confidence            1110  1 12466665 78888                  34567899998765432111 1111122334566333788


Q ss_pred             EEeCCCCeEEEEEec
Q 016199          251 YCETSMRRCRKFYIK  265 (393)
Q Consensus       251 v~~~~~~ri~~~~~~  265 (393)
                      ++-+ .+++.+...+
T Consensus       152 ~a~t-~G~vlavt~~  165 (354)
T KOG4649|consen  152 AAIT-AGAVLAVTKN  165 (354)
T ss_pred             EEec-cceEEEEccC
Confidence            8765 6788888764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.47  E-value=0.089  Score=49.01  Aligned_cols=179  Identities=13%  Similarity=0.122  Sum_probs=102.9

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEE
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLL  167 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l  167 (393)
                      +|+  +|..+-.|+.|.+|..||.....   ....+....+....+.|.+.-   +...|+-|..++.|..++...-..+
T Consensus        49 vAV--s~~~~aSGssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~---S~shLlS~sdDG~i~iw~~~~W~~~  120 (362)
T KOG0294|consen   49 LAV--SGPYVASGSSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPL---SKSHLLSGSDDGHIIIWRVGSWELL  120 (362)
T ss_pred             EEe--cceeEeccCCCCcEEEEeccchh---hhcceeccccceEEEEecCCc---chhheeeecCCCcEEEEEcCCeEEe
Confidence            455  45555556668899999987543   123333445778888887642   1114666643444666665442112


Q ss_pred             eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC
Q 016199          168 TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT  247 (393)
Q Consensus       168 ~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~  247 (393)
                       ....+.. ..+++|++.|.|.|-++-                 .+.+.+.-+|..+|+......--..+.-|.+++.|+
T Consensus       121 -~slK~H~-~~Vt~lsiHPS~KLALsV-----------------g~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd  181 (362)
T KOG0294|consen  121 -KSLKAHK-GQVTDLSIHPSGKLALSV-----------------GGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD  181 (362)
T ss_pred             -eeecccc-cccceeEecCCCceEEEE-----------------cCCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence             1222222 237899999999988874                 223345556666665443332223455699999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       248 ~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      +.++..  +++|-.|.++.-+   .-..+. .|..+-++.++..+.+.+|..
T Consensus       182 ~F~v~~--~~~i~i~q~d~A~---v~~~i~-~~~r~l~~~~l~~~~L~vG~d  227 (362)
T KOG0294|consen  182 HFVVSG--RNKIDIYQLDNAS---VFREIE-NPKRILCATFLDGSELLVGGD  227 (362)
T ss_pred             EEEEEe--ccEEEEEecccHh---Hhhhhh-ccccceeeeecCCceEEEecC
Confidence            777764  4788888775321   111121 122345566676666777654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.44  E-value=0.0075  Score=57.27  Aligned_cols=198  Identities=17%  Similarity=0.188  Sum_probs=116.3

Q ss_pred             ccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeee-----------EECCCC
Q 016199           71 LQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGI-----------AFANSD  139 (393)
Q Consensus        71 l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl-----------~~d~~G  139 (393)
                      +..+.....|....-.++.+..+| .+|.|+.|++|..|+..++.   ..+.+.......+.|           +|++.|
T Consensus       236 ~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~---~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~  311 (480)
T KOG0271|consen  236 LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK---LCRELKGHAHWVNHLALSTDYVLRTGAFDHTG  311 (480)
T ss_pred             CceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh---HHHhhcccchheeeeeccchhhhhcccccccc
Confidence            444566667766666778887776 79999999999999876643   011110001111111           122222


Q ss_pred             CCC--------------------CceEEEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCc
Q 016199          140 PDA--------------------DRITMIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNK  198 (393)
Q Consensus       140 ~~~--------------------~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~  198 (393)
                      ..+                    +.++|.-|..+.-++..++.. .+.+. ...|. ...+|.+.++|||+. ++.++. 
T Consensus       312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~-rmtgH-q~lVn~V~fSPd~r~-IASaSF-  387 (480)
T KOG0271|consen  312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT-RMTGH-QALVNHVSFSPDGRY-IASASF-  387 (480)
T ss_pred             ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh-hhhch-hhheeeEEECCCccE-EEEeec-
Confidence            100                    002455554344567776643 21221 11222 245789999999964 554443 


Q ss_pred             cchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec
Q 016199          199 YYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE  277 (393)
Q Consensus       199 ~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~  277 (393)
                                     ...|--+|..+|+.-. +........-++++.|. .|+|+.+....|-.|++..++      +..
T Consensus       388 ---------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK------l~~  445 (480)
T KOG0271|consen  388 ---------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK------LKQ  445 (480)
T ss_pred             ---------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee------ecc
Confidence                           2346666766776533 33345556789999998 588999999999999986432      344


Q ss_pred             cCCCCCCeEE---ECCCCCEEEEE
Q 016199          278 TLPGLPDNIR---YDGEGHYLIAL  298 (393)
Q Consensus       278 ~l~g~P~~i~---~d~~G~lwva~  298 (393)
                      .+||..|.+.   -.+||..-.+.
T Consensus       446 DLpGh~DEVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  446 DLPGHADEVFAVDWSPDGQRVASG  469 (480)
T ss_pred             cCCCCCceEEEEEecCCCceeecC
Confidence            6888887754   36788765543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.44  E-value=0.0095  Score=58.12  Aligned_cols=132  Identities=14%  Similarity=0.131  Sum_probs=89.7

Q ss_pred             EEEEEecCC-eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccC
Q 016199           96 LIYTGCEDG-WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAE  172 (393)
Q Consensus        96 ~L~~~~~~g-~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~  172 (393)
                      -+.+|+.+| .+..++.+++.    ++.+...-+....+..+++|     +.+.+++....|+.+|.+.  .+.+-..  
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dG-----K~~vvaNdr~el~vididngnv~~idkS--  441 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDG-----KKVVVANDRFELWVIDIDNGNVRLIDKS--  441 (668)
T ss_pred             ceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCC-----cEEEEEcCceEEEEEEecCCCeeEeccc--
Confidence            366788877 78888888776    77776666788999999999     2477776666788888654  4443222  


Q ss_pred             CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEE
Q 016199          173 GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       173 g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~  252 (393)
                        ....+.+++++++++ |++            +.+-++.-+..+-.||..++++-.+.+...+-..-+++||++.||+-
T Consensus       442 --~~~lItdf~~~~nsr-~iA------------YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         442 --EYGLITDFDWHPNSR-WIA------------YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             --ccceeEEEEEcCCce-eEE------------EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence              223466888888875 444            11123333456888999887776665554444556789999999886


Q ss_pred             e
Q 016199          253 E  253 (393)
Q Consensus       253 ~  253 (393)
                      .
T Consensus       507 s  507 (668)
T COG4946         507 S  507 (668)
T ss_pred             e
Confidence            5

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.44  E-value=0.16  Score=52.60  Aligned_cols=177  Identities=12%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             EEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc
Q 016199           88 LLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g  163 (393)
                      +++...|+.|-+|+. -|.+..|+.+...     ..+..  ...+...++..+||      .+.++.+..| |-.+|...
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWqsEs-----YVlKQQgH~~~i~~l~YSpDg------q~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQSES-----YVLKQQGHSDRITSLAYSPDG------QLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEeeccc-----eeeeccccccceeeEEECCCC------cEEEeccCCCcEEEEeccC
Confidence            445445554444443 3566666655432     11111  13467889999999      7777766555 66667644


Q ss_pred             -eE--EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecCc-cCCC
Q 016199          164 -TV--LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDL-YFAN  238 (393)
Q Consensus       164 -~~--~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~l-~~~n  238 (393)
                       ..  .+...     ...+.++.+...|+..++.                 +-.|+|-.+|.+.. ..+++...- ....
T Consensus       382 gfC~vTFteH-----ts~Vt~v~f~~~g~~llss-----------------SLDGtVRAwDlkRYrNfRTft~P~p~Qfs  439 (893)
T KOG0291|consen  382 GFCFVTFTEH-----TSGVTAVQFTARGNVLLSS-----------------SLDGTVRAWDLKRYRNFRTFTSPEPIQFS  439 (893)
T ss_pred             ceEEEEeccC-----CCceEEEEEEecCCEEEEe-----------------ecCCeEEeeeecccceeeeecCCCceeee
Confidence             32  22222     2335688899999988884                 34678888987643 233333221 2246


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      .++++|.|+.+.........|+.|.++   +|+......+..|--.+++++++|...++..-
T Consensus       440 cvavD~sGelV~AG~~d~F~IfvWS~q---TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  440 CVAVDPSGELVCAGAQDSFEIFVWSVQ---TGQLLDILSGHEGPVSGLSFSPDGSLLASGSW  498 (893)
T ss_pred             EEEEcCCCCEEEeeccceEEEEEEEee---cCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence            788888897655555555688888874   45533333344443467889999997765543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.42  E-value=0.0091  Score=58.56  Aligned_cols=154  Identities=14%  Similarity=0.132  Sum_probs=90.0

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-e
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-T  164 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~  164 (393)
                      ++++...+++|+|... .|..|+.....+..-+....  +..+-...-.+.+||     +.|+|+.....+-.+|... .
T Consensus       425 vtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-----rtLivGGeastlsiWDLAapT  498 (705)
T KOG0639|consen  425 VTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----RTLIVGGEASTLSIWDLAAPT  498 (705)
T ss_pred             EEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecCCC-----ceEEeccccceeeeeeccCCC
Confidence            4566666789987654 47777775432111111111  111223344556788     3688875445577777654 2


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEecCccCCCcEEEc
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSDLYFANGVVLS  243 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~~~l~~~ngi~~s  243 (393)
                      ..+..+.... ...+..+++.+|-++-|+.-                 ..|.|..||.....+. .+...-..+..|.++
T Consensus       499 prikaeltss-apaCyALa~spDakvcFscc-----------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  499 PRIKAELTSS-APACYALAISPDAKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             cchhhhcCCc-chhhhhhhcCCccceeeeec-----------------cCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence            2222222211 13467889999999888852                 2456888887644332 222223346678899


Q ss_pred             CCCCEEEEEeCCCCeEEEEEecC
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      +||-. +|+.-..+.+..||+..
T Consensus       561 ~dGtk-lWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  561 KDGTK-LWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             CCCce-eecCCCccceeehhhhh
Confidence            99954 56676789999999863

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.41  E-value=0.0079  Score=57.65  Aligned_cols=159  Identities=9%  Similarity=0.131  Sum_probs=100.9

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      +|..+.-.-|.|+||.+.|.+...+.-+..+|.+++.   ....+... +..+..-+.-+||     .++.+|...++++
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd---~~~~y~~~~~~S~~sc~W~pDg-----~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD---LRHLYPSGLGFSVSSCAWCPDG-----FRFVTGSPDRTII  337 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcch---hhhhcccCcCCCcceeEEccCC-----ceeEecCCCCcEE
Confidence            3433444558899999877665556668888887664   12333322 3567778888898     2455665577899


Q ss_pred             EEeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199          158 KISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF  236 (393)
Q Consensus       158 ~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~  236 (393)
                      ..|.+|.  +....+|.....+.++++.+||. ++..+                  ....+..|+..+..-+-+...-..
T Consensus       338 ~wdlDgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~------------------~d~~i~l~~~e~~~dr~lise~~~  397 (519)
T KOG0293|consen  338 MWDLDGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVT------------------VDKKIRLYNREARVDRGLISEEQP  397 (519)
T ss_pred             EecCCcc--hhhcccccccceeEEEEEcCCCcEEEEEe------------------cccceeeechhhhhhhccccccCc
Confidence            9999881  12233444445578999999994 44442                  123566676654332223333344


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ...++++.||+..++ +-....+..+|++.
T Consensus       398 its~~iS~d~k~~Lv-nL~~qei~LWDl~e  426 (519)
T KOG0293|consen  398 ITSFSISKDGKLALV-NLQDQEIHLWDLEE  426 (519)
T ss_pred             eeEEEEcCCCcEEEE-EcccCeeEEeecch
Confidence            577899999976655 44578899999874

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.39  E-value=0.0059  Score=58.81  Aligned_cols=146  Identities=14%  Similarity=0.120  Sum_probs=94.3

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g  163 (393)
                      =.+.+++|||..+-+|+.||.|..|+.....   .+..|....+....|.|..+|      ...+..+..+ |..+|...
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~Fpght~~vk~i~FsENG------Y~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAKFPGHTGPVKAISFSENG------YWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCcc---ccccCCCCCCceeEEEeccCc------eEEEEEecCCeEEEEEehh
Confidence            3467899999644467789988888887543   145554444556899999999      4444445666 88888654


Q ss_pred             ---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe---cCccCC
Q 016199          164 ---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV---SDLYFA  237 (393)
Q Consensus       164 ---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~---~~l~~~  237 (393)
                         ++.+.    -....-++.+.+|..|...+.-                 ...-.||.++.+++.++...   ......
T Consensus       421 l~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~-----------------g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s  479 (506)
T KOG0289|consen  421 LKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIA-----------------GSDLQVYICKKKTKSWTEIKELADHSGLS  479 (506)
T ss_pred             hcccceee----ccccccceeEEEcCCCCeEEee-----------------cceeEEEEEecccccceeeehhhhccccc
Confidence               22221    1111236789999999654442                 23457889988877766542   334467


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKF  262 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~  262 (393)
                      +|+.|..+-  .|+..++..+++++
T Consensus       480 t~v~Fg~~a--q~l~s~smd~~l~~  502 (506)
T KOG0289|consen  480 TGVRFGEHA--QYLASTSMDAILRL  502 (506)
T ss_pred             ceeeecccc--eEEeeccchhheEE
Confidence            899887664  45556666777664

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.36  E-value=0.08  Score=50.19  Aligned_cols=178  Identities=13%  Similarity=0.093  Sum_probs=81.7

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC-----ceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG-----RPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~-----~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      ....+|+|..+.+ -|+....+.|++=. +++.   .++.......     +-..+.++. .      +.||+. ..|++
T Consensus        17 ~~l~dV~F~d~~~-G~~VG~~g~il~T~-DGG~---tW~~~~~~~~~~~~~~l~~I~f~~-~------~g~ivG-~~g~l   83 (302)
T PF14870_consen   17 KPLLDVAFVDPNH-GWAVGAYGTILKTT-DGGK---TWQPVSLDLDNPFDYHLNSISFDG-N------EGWIVG-EPGLL   83 (302)
T ss_dssp             S-EEEEEESSSS--EEEEETTTEEEEES-STTS---S-EE-----S-----EEEEEEEET-T------EEEEEE-ETTEE
T ss_pred             CceEEEEEecCCE-EEEEecCCEEEEEC-CCCc---cccccccCCCccceeeEEEEEecC-C------ceEEEc-CCceE
Confidence            3455677875554 55555566666543 3332   1444321111     234666654 4      566663 45655


Q ss_pred             EEeCCc-e--EEE--eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          158 KISGNS-T--VLL--TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       158 ~id~~g-~--~~l--~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      ....++ .  +.+  ....++.+    ..+....++.++++.                  ..|.||+-.-.+...+.+..
T Consensus        84 l~T~DgG~tW~~v~l~~~lpgs~----~~i~~l~~~~~~l~~------------------~~G~iy~T~DgG~tW~~~~~  141 (302)
T PF14870_consen   84 LHTTDGGKTWERVPLSSKLPGSP----FGITALGDGSAELAG------------------DRGAIYRTTDGGKTWQAVVS  141 (302)
T ss_dssp             EEESSTTSS-EE----TT-SS-E----EEEEEEETTEEEEEE------------------TT--EEEESSTTSSEEEEE-
T ss_pred             EEecCCCCCcEEeecCCCCCCCe----eEEEEcCCCcEEEEc------------------CCCcEEEeCCCCCCeeEccc
Confidence            555554 2  222  12233332    244444455555542                  24678877655556665543


Q ss_pred             C-ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          233 D-LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       233 ~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      + ....+.+..++||+.+.|+  .++.+++-+-.|.  ..-+.+...-...-.+|.++++|.+|+...
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~~  205 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLAR  205 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEET
T ss_pred             CCcceeEeEEECCCCcEEEEE--CcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEeC
Confidence            3 3334566778999766555  4566776543332  112223222223345688899999999875

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.043  Score=50.63  Aligned_cols=107  Identities=22%  Similarity=0.280  Sum_probs=59.6

Q ss_pred             CCceeeeEECCCCCCCCceEEEEEeCCCc--eEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccch
Q 016199          127 GGRPLGIAFANSDPDADRITMIVADAYKG--LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYL  201 (393)
Q Consensus       127 ~~~p~gl~~d~~G~~~~~~~L~v~~~~~g--l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~  201 (393)
                      ..+-++|++++.-+    ..+.++ -.-|  .+.+|+++  ..+.....++..+ +-++ ++++|| .||.|.-..+   
T Consensus        67 paR~Hgi~~~p~~~----ravafA-RrPGtf~~vfD~~~~~~pv~~~s~~~RHf-yGHG-vfs~dG~~LYATEndfd---  136 (366)
T COG3490          67 PARGHGIAFHPALP----RAVAFA-RRPGTFAMVFDPNGAQEPVTLVSQEGRHF-YGHG-VFSPDGRLLYATENDFD---  136 (366)
T ss_pred             ccccCCeecCCCCc----ceEEEE-ecCCceEEEECCCCCcCcEEEecccCcee-eccc-ccCCCCcEEEeecCCCC---
Confidence            45677888887531    134444 2333  45668877  2222223344433 2345 588999 5677642111   


Q ss_pred             hhheehhcccCCCcEEEEEeCCCCeEEE---EecCccCCCcEEEcCCCCEEEEEeC
Q 016199          202 REYILDIFEGKPNGRLLSFDPVTKETKV---LVSDLYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       202 ~~~~~~~~e~~~~g~l~~~d~~t~~~~~---~~~~l~~~ngi~~s~dg~~l~v~~~  254 (393)
                                ...|-|=.||... .+..   +...-..|+.+.+.+||+.+.+++-
T Consensus       137 ----------~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         137 ----------PNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ----------CCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence                      2334455676543 2222   2233456899999999998888753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.36  E-value=0.21  Score=50.95  Aligned_cols=257  Identities=11%  Similarity=0.037  Sum_probs=124.3

Q ss_pred             CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCc-------eeeeEECCCCCCCCceEEEEEeC---------CCceEE
Q 016199           95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGR-------PLGIAFANSDPDADRITMIVADA---------YKGLLK  158 (393)
Q Consensus        95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~-------p~gl~~d~~G~~~~~~~L~v~~~---------~~gl~~  158 (393)
                      +.+|+++.++.|+.++.++++    ..........       -....+. ++      .+|++..         .+.++.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~----~~W~~~~~~~~~~~~~i~ssP~v~-~~------~v~vg~~~~~~~~~~~~g~v~a  179 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGK----QVWKFGNNDQVPPGYTMTGAPTIV-KK------LVIIGSSGAEFFACGVRGALRA  179 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCC----EeeeecCCCCcCcceEecCCCEEE-CC------EEEEeccccccccCCCCcEEEE
Confidence            469999999999999998765    2222111111       0122232 36      7888743         234788


Q ss_pred             EeCC-ceEEEeeccC-Ccc--cc---------------ccccEEEcC-CCcEEEEeCCCc-cchhhheehhcccCCCcEE
Q 016199          159 ISGN-STVLLTDEAE-GQK--FK---------------LTDGVDVAD-DGMIYFTDASNK-YYLREYILDIFEGKPNGRL  217 (393)
Q Consensus       159 id~~-g~~~l~~~~~-g~~--~~---------------~~~~l~~d~-dG~l~~td~~~~-~~~~~~~~~~~e~~~~g~l  217 (393)
                      +|.+ |......... ..+  ..               .-...++|+ .|.+|++..... ........ .......+.|
T Consensus       180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~-~~~~~~~~~l  258 (488)
T cd00216         180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRT-PGDNLYTDSI  258 (488)
T ss_pred             EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccC-CCCCCceeeE
Confidence            8875 4333322111 100  00               001346665 568888853210 00000000 0001124579


Q ss_pred             EEEeCCCCeEEEEec-C---c---cCCCcEEEc----CCCC--EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC
Q 016199          218 LSFDPVTKETKVLVS-D---L---YFANGVVLS----PDQT--HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD  284 (393)
Q Consensus       218 ~~~d~~t~~~~~~~~-~---l---~~~ngi~~s----~dg~--~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~  284 (393)
                      +.+|.++|+..=... .   +   ..+....+.    -||+  .+++..+..++++.++.+.   |+ ..+.....  -.
T Consensus       259 ~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t---G~-~~W~~~~~--~~  332 (488)
T cd00216         259 VALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT---GK-LISARPEV--EQ  332 (488)
T ss_pred             EEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC---Cc-EeeEeEee--cc
Confidence            999999887542211 1   0   111111111    2343  2445556678999999742   22 12211111  12


Q ss_pred             eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--------
Q 016199          285 NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--------  355 (393)
Q Consensus       285 ~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--------  355 (393)
                      +++.++ +.+|++.......+    ....             .........+.|..+|. +|+++-....+.        
T Consensus       333 ~~~~~~-~~vyv~~~~~~~~~----~~~~-------------~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g  394 (488)
T cd00216         333 PMAYDP-GLVYLGAFHIPLGL----PPQK-------------KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIG  394 (488)
T ss_pred             ccccCC-ceEEEccccccccC----cccc-------------cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccC
Confidence            244454 67887653211000    0000             00011123367999995 688887766541        


Q ss_pred             -CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          356 -MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       356 -~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                       ....+.....++.||+++ ....|..||.+...
T Consensus       395 ~~~~~~~~~~~g~~v~~g~-~dG~l~ald~~tG~  427 (488)
T cd00216         395 FPHWGGSLATAGNLVFAGA-ADGYFRAFDATTGK  427 (488)
T ss_pred             CcccCcceEecCCeEEEEC-CCCeEEEEECCCCc
Confidence             111123345678999997 55688888876544

The alignment model contains an 8-bladed beta-propeller.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.35  E-value=0.12  Score=47.63  Aligned_cols=185  Identities=11%  Similarity=0.116  Sum_probs=106.4

Q ss_pred             eEEEecCCCEEEEEecCCe--EEEEEcCCCCCccee-eeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-
Q 016199           87 DLLYDAHSKLIYTGCEDGW--IKRVTLNDSPADSLV-HNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN-  162 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~--I~~~~~~~~~~~~~~-~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-  162 (393)
                      ..|+.|.|+.+-.|.-|..  ||.+...+..+...+ ..+....+-.....|-.|+      .|+.+..+.-...+|.+ 
T Consensus       102 tCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~------~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen  102 TCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN------HILTGSGDMTCALWDIET  175 (343)
T ss_pred             EEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC------ceEecCCCceEEEEEccc
Confidence            4789999986555555554  554442211111111 1222223345566666687      77777555556666754 


Q ss_pred             ceEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcE
Q 016199          163 STVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGV  240 (393)
Q Consensus       163 g~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi  240 (393)
                      |....  .+.|.. .-+-++.+.| +++.|++-                 .....-+.+|...+.. +.+...-.-.|.|
T Consensus       176 g~~~~--~f~GH~-gDV~slsl~p~~~ntFvSg-----------------~cD~~aklWD~R~~~c~qtF~ghesDINsv  235 (343)
T KOG0286|consen  176 GQQTQ--VFHGHT-GDVMSLSLSPSDGNTFVSG-----------------GCDKSAKLWDVRSGQCVQTFEGHESDINSV  235 (343)
T ss_pred             ceEEE--EecCCc-ccEEEEecCCCCCCeEEec-----------------ccccceeeeeccCcceeEeecccccccceE
Confidence            32111  122222 1234677888 88999884                 2334455666654433 3344444567999


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEec
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      .|.|+| .-+.+.+..+.+..||+..+  .+...|... ...--..++++..|++.++...
T Consensus       236 ~ffP~G-~afatGSDD~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~  293 (343)
T KOG0286|consen  236 RFFPSG-DAFATGSDDATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKSGRLLFAGYD  293 (343)
T ss_pred             EEccCC-CeeeecCCCceeEEEeecCC--cEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence            999999 56788888899999999543  234444311 1111356889999998887653

>PTZ00421 coronin; Provisional

Probab=97.32  E-value=0.058  Score=54.94  Aligned_cols=162  Identities=8%  Similarity=0.031  Sum_probs=92.7

Q ss_pred             CCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-ceEEEe
Q 016199           83 KGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-GLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~id  160 (393)
                      ....+++|.|++ +.|.+++.|+.|..|+.+.+.   ....+........++++.++|      .++++.... .|..+|
T Consensus       126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~---~~~~l~~h~~~V~sla~spdG------~lLatgs~Dg~IrIwD  196 (493)
T PTZ00421        126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK---AVEVIKCHSDQITSLEWNLDG------SLLCTTSKDKKLNIID  196 (493)
T ss_pred             CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe---EEEEEcCCCCceEEEEEECCC------CEEEEecCCCEEEEEE
Confidence            345668999875 577788889999999988654   123333234457899999999      766554544 466778


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe--EEEEe-cCccCC
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE--TKVLV-SDLYFA  237 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~--~~~~~-~~l~~~  237 (393)
                      ....+.+. ...+........+.+.+++..+++....             ....+.|..||..+..  ..... +.....
T Consensus       197 ~rsg~~v~-tl~~H~~~~~~~~~w~~~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~  262 (493)
T PTZ00421        197 PRDGTIVS-SVEAHASAKSQRCLWAKRKDLIITLGCS-------------KSQQRQIMLWDTRKMASPYSTVDLDQSSAL  262 (493)
T ss_pred             CCCCcEEE-EEecCCCCcceEEEEcCCCCeEEEEecC-------------CCCCCeEEEEeCCCCCCceeEeccCCCCce
Confidence            65411111 1111110111234555666555553211             0224568888875432  11111 111112


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      ....+++|++.+|++..+.+.|..|++...
T Consensus       263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            224578999888888777888999998643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.31  E-value=0.14  Score=48.68  Aligned_cols=241  Identities=14%  Similarity=0.138  Sum_probs=122.5

Q ss_pred             cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ...-|.+.+.|.++.|.+|+.+|.++.|....+.   ..+.+.....+...=.|-++|     +++..+...+-|..+++
T Consensus       148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct~G~f~pdG-----Kr~~tgy~dgti~~Wn~  219 (399)
T KOG0296|consen  148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCTCGEFIPDG-----KRILTGYDDGTIIVWNP  219 (399)
T ss_pred             cCceEEEEecccccEEEeecCCCcEEEEECCCcc---eeeEecCCCCCcccccccCCC-----ceEEEEecCceEEEEec
Confidence            3456778999999999999999999999887633   133333222222333566788     36666655455777788


Q ss_pred             Cc-eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199          162 NS-TVLLT-DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG  239 (393)
Q Consensus       162 ~g-~~~l~-~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng  239 (393)
                      +. ..... ...++.+   ...+.+...|.+.+.-.+..     -.+.+.  ..+|.+.-.+..+. .......-...+.
T Consensus       220 ktg~p~~~~~~~e~~~---~~~~~~~~~~~~~~~g~~e~-----~~~~~~--~~sgKVv~~~n~~~-~~l~~~~e~~~es  288 (399)
T KOG0296|consen  220 KTGQPLHKITQAEGLE---LPCISLNLAGSTLTKGNSEG-----VACGVN--NGSGKVVNCNNGTV-PELKPSQEELDES  288 (399)
T ss_pred             CCCceeEEecccccCc---CCccccccccceeEeccCCc-----cEEEEc--cccceEEEecCCCC-ccccccchhhhhh
Confidence            65 22221 1222222   12333333343333210000     000000  12233333222111 0000000011122


Q ss_pred             EE---EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEE---ECCCCCEEEEEecCcchhhhhhhcCc
Q 016199          240 VV---LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIR---YDGEGHYLIALATEFSTYWDLAYRYP  313 (393)
Q Consensus       240 i~---~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~---~d~~G~lwva~~~~r~~~~~~~~~~~  313 (393)
                      |.   ++.+= -|..+....++|..||+...   ..+....    .++++.   ..+.-.++-++..             
T Consensus       289 ve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~---~~R~~c~----he~~V~~l~w~~t~~l~t~c~~-------------  347 (399)
T KOG0296|consen  289 VESIPSSSKL-PLAACGSVDGTIAIYDLAAS---TLRHICE----HEDGVTKLKWLNTDYLLTACAN-------------  347 (399)
T ss_pred             hhhccccccc-chhhcccccceEEEEecccc---hhheecc----CCCceEEEEEcCcchheeeccC-------------
Confidence            22   22222 25566667899999998532   2222221    233433   3443444544442             


Q ss_pred             chhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          314 FIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       314 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                            +.|.++|. .|+....|+-.......++...+.++.++.-..+-..+|+.
T Consensus       348 ----------------------g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  348 ----------------------GKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             ----------------------ceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence                                  45788885 68888888876666667777778777777655555555554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=97.31  E-value=0.12  Score=47.09  Aligned_cols=192  Identities=14%  Similarity=0.232  Sum_probs=109.1

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      +.++.-.++++..+|..|-.|+.++.+..++.+...   ......  ...+....++.++..+|    .+..+.++..|.
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r---~~~~~~~~gh~~svdql~w~~~~~d----~~atas~dk~ir   90 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR---FRKELVYRGHTDSVDQLCWDPKHPD----LFATASGDKTIR   90 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchh---hhhhhcccCCCcchhhheeCCCCCc----ceEEecCCceEE
Confidence            344555679999999988888889888888776542   011111  11234567888876542    444444455577


Q ss_pred             EEeC-CceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc
Q 016199          158 KISG-NSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY  235 (393)
Q Consensus       158 ~id~-~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~  235 (393)
                      ++|. .+......+..+..+    -+...|+| .+.+++                  ....|-.+|..+.+...-.....
T Consensus        91 ~wd~r~~k~~~~i~~~~eni----~i~wsp~g~~~~~~~------------------kdD~it~id~r~~~~~~~~~~~~  148 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENI----NITWSPDGEYIAVGN------------------KDDRITFIDARTYKIVNEEQFKF  148 (313)
T ss_pred             EEEeccCcEEEEeeccCcce----EEEEcCCCCEEEEec------------------CcccEEEEEecccceeehhcccc
Confidence            7774 332122112222222    45778887 454552                  34567777765444333233345


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe---EEECCCCCEEE-EEecCcchhhh
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN---IRYDGEGHYLI-ALATEFSTYWD  307 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~---i~~d~~G~lwv-a~~~~r~~~~~  307 (393)
                      +.|-+++.-++ .++|.+++.|.|.....-  .   .+... .+...|.|   |.+|++|+++. +....-..+||
T Consensus       149 e~ne~~w~~~n-d~Fflt~GlG~v~ILsyp--s---Lkpv~-si~AH~snCicI~f~p~GryfA~GsADAlvSLWD  217 (313)
T KOG1407|consen  149 EVNEISWNNSN-DLFFLTNGLGCVEILSYP--S---LKPVQ-SIKAHPSNCICIEFDPDGRYFATGSADALVSLWD  217 (313)
T ss_pred             eeeeeeecCCC-CEEEEecCCceEEEEecc--c---ccccc-ccccCCcceEEEEECCCCceEeeccccceeeccC
Confidence            67888888666 577888888887776542  1   11111 23345544   55799999764 33333334554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.0049  Score=57.21  Aligned_cols=180  Identities=18%  Similarity=0.301  Sum_probs=102.3

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe-C-C
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS-G-N  162 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id-~-~  162 (393)
                      .+|.|+.|...|-.|+.||+|..|...+++   ....|. ....+...+.|.+|+      .-.+........++. . .
T Consensus       267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~---ClRrFdrAHtkGvt~l~FSrD~------SqiLS~sfD~tvRiHGlKS  337 (508)
T KOG0275|consen  267 LCISFSRDSEMLASGSQDGKIKVWRIETGQ---CLRRFDRAHTKGVTCLSFSRDN------SQILSASFDQTVRIHGLKS  337 (508)
T ss_pred             EEEeecccHHHhhccCcCCcEEEEEEecch---HHHHhhhhhccCeeEEEEccCc------chhhcccccceEEEecccc
Confidence            346677777666677889988888877664   233332 123456788898888      444443445555554 2 2


Q ss_pred             ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE----EEecCccCCC
Q 016199          163 STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK----VLVSDLYFAN  238 (393)
Q Consensus       163 g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~----~~~~~l~~~n  238 (393)
                      | +.+ .+..|.. .++|...+.+||.-.++.                 +..|.+-.++.++.+..    .+..+.. .|
T Consensus       338 G-K~L-KEfrGHs-Syvn~a~ft~dG~~iisa-----------------SsDgtvkvW~~KtteC~~Tfk~~~~d~~-vn  396 (508)
T KOG0275|consen  338 G-KCL-KEFRGHS-SYVNEATFTDDGHHIISA-----------------SSDGTVKVWHGKTTECLSTFKPLGTDYP-VN  396 (508)
T ss_pred             c-hhH-HHhcCcc-ccccceEEcCCCCeEEEe-----------------cCCccEEEecCcchhhhhhccCCCCccc-ce
Confidence            3 111 2344433 578898999999766664                 34567888887765421    1122222 34


Q ss_pred             cEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEe
Q 016199          239 GVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       239 gi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+-+-| +-+.++||+. .+.++..++.|.-   .+.|..+  ..|---+.++++.|.+..+..
T Consensus       397 sv~~~PKnpeh~iVCNr-sntv~imn~qGQv---VrsfsSGkREgGdFi~~~lSpkGewiYcig  456 (508)
T KOG0275|consen  397 SVILLPKNPEHFIVCNR-SNTVYIMNMQGQV---VRSFSSGKREGGDFINAILSPKGEWIYCIG  456 (508)
T ss_pred             eEEEcCCCCceEEEEcC-CCeEEEEeccceE---EeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence            444444 4457778776 5789999887642   2223211  111112345678887444443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.26  E-value=0.17  Score=47.29  Aligned_cols=190  Identities=19%  Similarity=0.260  Sum_probs=102.7

Q ss_pred             cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe-CCCc--eEE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD-AYKG--LLK  158 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~-~~~g--l~~  158 (393)
                      ...-.+++|+++|+.|.+++.|..|..||.-.+.   ..+.+.- .....+..+.+..    | +..|+. ....  +..
T Consensus        65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs---~l~rirf-~spv~~~q~hp~k----~-n~~va~~~~~sp~vi~  135 (405)
T KOG1273|consen   65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS---PLKRIRF-DSPVWGAQWHPRK----R-NKCVATIMEESPVVID  135 (405)
T ss_pred             ccceeEEEecCCCCEeeeecCCceeEEEeccCCC---ceeEEEc-cCccceeeecccc----C-CeEEEEEecCCcEEEE
Confidence            3444569999999999999999999999987654   1233221 1222333344322    1 344432 2222  222


Q ss_pred             EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ecCcc
Q 016199          159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VSDLY  235 (393)
Q Consensus       159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~~l~  235 (393)
                      ++. + ...|....++.....+....+|+.|...++-                 ++.|.++.||..|-+...-  .....
T Consensus       136 ~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG-----------------tsKGkllv~~a~t~e~vas~rits~~  197 (405)
T KOG1273|consen  136 FSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG-----------------TSKGKLLVYDAETLECVASFRITSVQ  197 (405)
T ss_pred             ecC-CceeeccCCCccccccccccccccCCCCEEEEe-----------------cCcceEEEEecchheeeeeeeechhe
Confidence            322 3 3444433333322223334688888544442                 5678899999876543221  11123


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecC---C-CCcceee---eeccCCCCC-CeEEECCCCCEEEEEe
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKG---K-NAGRVEK---FIETLPGLP-DNIRYDGEGHYLIALA  299 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g---~-~~~~~~~---~~~~l~g~P-~~i~~d~~G~lwva~~  299 (393)
                      ....|.++..|+++.+ ++...-|..|+++.   . +.+..+.   +.+-....+ ..++++.+|.|.+|..
T Consensus       198 ~IK~I~~s~~g~~lii-NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s  268 (405)
T KOG1273|consen  198 AIKQIIVSRKGRFLII-NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS  268 (405)
T ss_pred             eeeEEEEeccCcEEEE-ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence            3456778888977655 45555666677641   1 2222221   111111112 4688999998887765

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.26  E-value=0.015  Score=59.73  Aligned_cols=187  Identities=14%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCcee-eeEECCCCCCCCceEEEEEeC-CCceEE---Ee
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL-GIAFANSDPDADRITMIVADA-YKGLLK---IS  160 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~-gl~~d~~G~~~~~~~L~v~~~-~~gl~~---id  160 (393)
                      .+..|.|+.+.|..++.|+.+..|..++...   +-.+.. ...|. .+.|.|-|       +|++++ +.+..+   .|
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~---~V~y~G-H~~PVwdV~F~P~G-------yYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC---LVIYKG-HLAPVWDVQFAPRG-------YYFATASHDQTARLWSTD  523 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeeccccee---EEEecC-CCcceeeEEecCCc-------eEEEecCCCceeeeeecc
Confidence            3467899988777777788887777776431   122221 12333 46688888       555543 333332   23


Q ss_pred             CCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-ccCCC
Q 016199          161 GNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LYFAN  238 (393)
Q Consensus       161 ~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~~~n  238 (393)
                      ..- .++++    | .+.-++.+.+.|+.+..+|- |                ....+..+|-.+|...++..+ -....
T Consensus       524 ~~~PlRifa----g-hlsDV~cv~FHPNs~Y~aTG-S----------------sD~tVRlWDv~~G~~VRiF~GH~~~V~  581 (707)
T KOG0263|consen  524 HNKPLRIFA----G-HLSDVDCVSFHPNSNYVATG-S----------------SDRTVRLWDVSTGNSVRIFTGHKGPVT  581 (707)
T ss_pred             cCCchhhhc----c-cccccceEEECCcccccccC-C----------------CCceEEEEEcCCCcEEEEecCCCCceE
Confidence            222 22222    1 12335568899988766653 2                223566666666655444443 34467


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcc-hhhhhh
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS-TYWDLA  309 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~-~~~~~~  309 (393)
                      .++++|+|++| .+....+.|..||+.+.+  ....+.+. .+.-..+.++.+|++.++....++ .+||+.
T Consensus       582 al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~--~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  582 ALAFSPCGRYL-ASGDEDGLIKIWDLANGS--LVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             EEEEcCCCceE-eecccCCcEEEEEcCCCc--chhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            89999999766 666668889999985421  12223322 445567889999999987766544 355544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.24  E-value=0.14  Score=50.09  Aligned_cols=142  Identities=15%  Similarity=0.192  Sum_probs=82.2

Q ss_pred             EecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CC---CceeeeEECCCCCCCCceEEEEEeCCCceEEEeC-Cce
Q 016199           90 YDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TG---GRPLGIAFANSDPDADRITMIVADAYKGLLKISG-NST  164 (393)
Q Consensus        90 ~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~---~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~-~g~  164 (393)
                      .+.+| .+|+++.+|.|+.++++++.    .. |.. ..   ....+-.+..+|      ++|+++..+-++.+|. +|.
T Consensus        65 ~~~dg-~v~~~~~~G~i~A~d~~~g~----~~-W~~~~~~~~~~~~~~~~~~~G------~i~~g~~~g~~y~ld~~~G~  132 (370)
T COG1520          65 ADGDG-TVYVGTRDGNIFALNPDTGL----VK-WSYPLLGAVAQLSGPILGSDG------KIYVGSWDGKLYALDASTGT  132 (370)
T ss_pred             EeeCC-eEEEecCCCcEEEEeCCCCc----EE-ecccCcCcceeccCceEEeCC------eEEEecccceEEEEECCCCc
Confidence            55566 49999999999999998764    22 211 11   122222333389      9999976555899998 673


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ec---CccCCCc
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VS---DLYFANG  239 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~---~l~~~ng  239 (393)
                      ........+. +... +-.+-.++.+|+.+                  ..+.++++|..+++..-.  ..   .......
T Consensus       133 ~~W~~~~~~~-~~~~-~~~v~~~~~v~~~s------------------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~  192 (370)
T COG1520         133 LVWSRNVGGS-PYYA-SPPVVGDGTVYVGT------------------DDGHLYALNADTGTLKWTYETPAPLSLSIYGS  192 (370)
T ss_pred             EEEEEecCCC-eEEe-cCcEEcCcEEEEec------------------CCCeEEEEEccCCcEEEEEecCCccccccccC
Confidence            3443333331 1111 22344578888872                  346799999887765321  11   1111222


Q ss_pred             EEEcCCCCEEEEEeCC-CCeEEEEEec
Q 016199          240 VVLSPDQTHLVYCETS-MRRCRKFYIK  265 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~-~~ri~~~~~~  265 (393)
                      .. ..++ .+|+.... ++.++.++..
T Consensus       193 ~~-~~~~-~vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         193 PA-IASG-TVYVGSDGYDGILYALNAE  217 (370)
T ss_pred             ce-eecc-eEEEecCCCcceEEEEEcc
Confidence            22 2344 67776553 4578888873

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.23  E-value=0.074  Score=49.69  Aligned_cols=223  Identities=16%  Similarity=0.155  Sum_probs=118.4

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCCCceE-EEeCC-----c-eEEEeeccC---C-ccccccccEEEcCCCcEEEEeCCC
Q 016199          129 RPLGIAFANSDPDADRITMIVADAYKGLL-KISGN-----S-TVLLTDEAE---G-QKFKLTDGVDVADDGMIYFTDASN  197 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~~gl~-~id~~-----g-~~~l~~~~~---g-~~~~~~~~l~~d~dG~l~~td~~~  197 (393)
                      .|=||++.+.|      .+||++...+.. .+|.+     + ...+.-.+.   + ..-..|.++++.....+-++.-..
T Consensus        24 N~WGia~~p~~------~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~   97 (336)
T TIGR03118        24 NAWGLSYRPGG------PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI   97 (336)
T ss_pred             ccceeEecCCC------CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence            47799999999      999999877743 34544     3 112211111   1 111235566655332222221100


Q ss_pred             ccchhhheehhcccCCCcEEEEEeCCCCeE---E--EEecC---ccCCCcEEEcCC--CCEEEEEeCCCCeEEEEEecCC
Q 016199          198 KYYLREYILDIFEGKPNGRLLSFDPVTKET---K--VLVSD---LYFANGVVLSPD--QTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       198 ~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~---~--~~~~~---l~~~ngi~~s~d--g~~l~v~~~~~~ri~~~~~~g~  267 (393)
                       .....|++.    +..|.|-.|.+.-+..   .  .+.+.   ...=.|+++...  +.+||.++..+++|-.||-.-.
T Consensus        98 -~~~a~Fif~----tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~  172 (336)
T TIGR03118        98 -TGPSRFLFV----TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR  172 (336)
T ss_pred             -ccceeEEEE----eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence             001111111    3456777777643322   1  11221   111246776643  5799999999999999984311


Q ss_pred             CCcceeeeeccCCCC-----CCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEEC
Q 016199          268 NAGRVEKFIETLPGL-----PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVD  342 (393)
Q Consensus       268 ~~~~~~~~~~~l~g~-----P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d  342 (393)
                      +....-.|.|  |.+     |-||.- -.|++||.-........|                     -..-...+.|-+||
T Consensus       173 ~~~~~g~F~D--P~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d---------------------~v~G~G~G~VdvFd  228 (336)
T TIGR03118       173 PPPLPGSFID--PALPAGYAPFNVQN-LGGTLYVTYAQQDADRND---------------------EVAGAGLGYVNVFT  228 (336)
T ss_pred             cccCCCCccC--CCCCCCCCCcceEE-ECCeEEEEEEecCCcccc---------------------cccCCCcceEEEEc
Confidence            1111112332  333     445542 257899875421100000                     00112235699999


Q ss_pred             CCCcEEEEeeCCC----CCccEEE----EEeCCEEEEEecCCCeEEEEeCCC
Q 016199          343 LDGKPIAHYYDPE----MSLISSA----IKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       343 ~~g~~~~~~~d~~----~~~~~~~----~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                      .+|+.++.+....    .+.++.+    -.-.|.|.+|.+.+..|..||...
T Consensus       229 ~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       229 LNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             CCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence            9999999987654    2222221    224589999999999999999653

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.21  E-value=0.036  Score=56.72  Aligned_cols=126  Identities=16%  Similarity=0.309  Sum_probs=71.4

Q ss_pred             CccccccccEEEcC-CCcEEEEeCCCccchhhhe--ehhcccCCCcEEEEEeCCCC-------eEEEEec----------
Q 016199          173 GQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYI--LDIFEGKPNGRLLSFDPVTK-------ETKVLVS----------  232 (393)
Q Consensus       173 g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~--~~~~e~~~~g~l~~~d~~t~-------~~~~~~~----------  232 (393)
                      ..++..+.++.+++ +|.+||+.+.....-..-.  .........|.|++|++..+       +++.+..          
T Consensus       346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~  425 (524)
T PF05787_consen  346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN  425 (524)
T ss_pred             cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence            34577789999998 4799998654331000000  00012345689999998765       3333221          


Q ss_pred             --------CccCCCcEEEcCCCCEEEEEeCCCCeE------------EEE--------EecCCCCcceeeeeccCC-CCC
Q 016199          233 --------DLYFANGVVLSPDQTHLVYCETSMRRC------------RKF--------YIKGKNAGRVEKFIETLP-GLP  283 (393)
Q Consensus       233 --------~l~~~ngi~~s~dg~~l~v~~~~~~ri------------~~~--------~~~g~~~~~~~~~~~~l~-g~P  283 (393)
                              .+..|..|+++++|+ ||++|-..+.-            +.+        +..+...++...|..... .-.
T Consensus       426 ~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~  504 (524)
T PF05787_consen  426 GSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEI  504 (524)
T ss_pred             ccCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCccc
Confidence                    256799999999995 77777554421            111        111223344444442111 123


Q ss_pred             CeEEECCCCC-EEEEEe
Q 016199          284 DNIRYDGEGH-YLIALA  299 (393)
Q Consensus       284 ~~i~~d~~G~-lwva~~  299 (393)
                      .|+++++||+ ++|...
T Consensus       505 tG~~fspDg~tlFvniQ  521 (524)
T PF05787_consen  505 TGPCFSPDGRTLFVNIQ  521 (524)
T ss_pred             ccceECCCCCEEEEEEe
Confidence            5788999998 666544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.21  E-value=0.077  Score=47.02  Aligned_cols=134  Identities=16%  Similarity=0.130  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeC--CCceEEEeCCceEEEeeccCCcccccccc
Q 016199          105 WIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADA--YKGLLKISGNSTVLLTDEAEGQKFKLTDG  181 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~--~~gl~~id~~g~~~l~~~~~g~~~~~~~~  181 (393)
                      .|++++..+..    ...+.. ..+....+++.|+|     +++.+...  ...+..+|.++..+.  ....   ...|.
T Consensus        40 ~l~~~~~~~~~----~~~i~l~~~~~I~~~~WsP~g-----~~favi~g~~~~~v~lyd~~~~~i~--~~~~---~~~n~  105 (194)
T PF08662_consen   40 ELFYLNEKNIP----VESIELKKEGPIHDVAWSPNG-----NEFAVIYGSMPAKVTLYDVKGKKIF--SFGT---QPRNT  105 (194)
T ss_pred             EEEEEecCCCc----cceeeccCCCceEEEEECcCC-----CEEEEEEccCCcccEEEcCcccEeE--eecC---CCceE
Confidence            46666655443    333322 12347899999998     24545432  335777777662111  1111   23568


Q ss_pred             EEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC-----C
Q 016199          182 VDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS-----M  256 (393)
Q Consensus       182 l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~-----~  256 (393)
                      |.++|+|++.+....              +...|.|..||..+.+..... .......++++|||+++..+.+.     .
T Consensus       106 i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~d  170 (194)
T PF08662_consen  106 ISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVD  170 (194)
T ss_pred             EEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceecc
Confidence            999999976655211              123467888998754432222 22346789999999988877654     4


Q ss_pred             CeEEEEEecCC
Q 016199          257 RRCRKFYIKGK  267 (393)
Q Consensus       257 ~ri~~~~~~g~  267 (393)
                      +++..|+..|.
T Consensus       171 ng~~Iw~~~G~  181 (194)
T PF08662_consen  171 NGFKIWSFQGR  181 (194)
T ss_pred             ccEEEEEecCe
Confidence            55666666654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.21  E-value=0.11  Score=46.66  Aligned_cols=177  Identities=11%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceE
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTV  165 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~  165 (393)
                      ..+.+.-+|+...+...+..|..|++..+.   .++.+...+...+..+...|+.     .+--+.....++.+|.+.-+
T Consensus        21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~---liktYsghG~EVlD~~~s~Dns-----kf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---LIKTYSGHGHEVLDAALSSDNS-----KFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             EEEEEccCCCEEEEcCCCceEEeecccccc---eeeeecCCCceeeecccccccc-----ccccCCCCceEEEEEcccCe
Confidence            446678889866666667788888887664   3566665555566666655541     34444344557778865411


Q ss_pred             EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe---cCccCCCcEEE
Q 016199          166 LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV---SDLYFANGVVL  242 (393)
Q Consensus       166 ~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~---~~l~~~ngi~~  242 (393)
                      ++. ...|. ...+|.+.+..+..+.++-                 +-...+..||=.+...+.+.   +.......|.+
T Consensus        93 v~R-r~rgH-~aqVNtV~fNeesSVv~Sg-----------------sfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v  153 (307)
T KOG0316|consen   93 VDR-RFRGH-LAQVNTVRFNEESSVVASG-----------------SFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV  153 (307)
T ss_pred             eee-ecccc-cceeeEEEecCcceEEEec-----------------cccceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence            221 11221 2346788888777777762                 22234666665544443322   11122223333


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-CeEEECCCCCEEEEE
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-DNIRYDGEGHYLIAL  298 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-~~i~~d~~G~lwva~  298 (393)
                      +  + +.+++.+..+++..|++.   .|+.  ..+.. |.| +.+.+.++|+.-.+.
T Consensus       154 ~--~-heIvaGS~DGtvRtydiR---~G~l--~sDy~-g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  154 A--E-HEIVAGSVDGTVRTYDIR---KGTL--SSDYF-GHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             c--c-cEEEeeccCCcEEEEEee---ccee--ehhhc-CCcceeEEecCCCCEEEEe
Confidence            3  3 567888999999999984   2321  22222 344 568899999955543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.20  E-value=0.22  Score=48.74  Aligned_cols=232  Identities=13%  Similarity=0.193  Sum_probs=124.8

Q ss_pred             CCCc-eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-eeeEECCCCCCCCceEEEEEeCCCc--eEE
Q 016199           83 KGPE-DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFANSDPDADRITMIVADAYKG--LLK  158 (393)
Q Consensus        83 ~~Pe-~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d~~G~~~~~~~L~v~~~~~g--l~~  158 (393)
                      .+|- ++-+...|+.|..+..|+.+..||..+++    ++........| ..+..-.+.      .+-.++..+.  +++
T Consensus       276 kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----~~q~f~~~s~~~lDVdW~~~~------~F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  276 KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----VKQQFEFHSAPALDVDWQSND------EFATSSTDGCIHVCK  345 (524)
T ss_pred             CCceEEEEEcCCCCEEEeccCCccEEEEeccCce----EEEeeeeccCCccceEEecCc------eEeecCCCceEEEEE
Confidence            4453 46788888888888889999999987765    44443333444 444443343      4544444433  455


Q ss_pred             EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecC---
Q 016199          159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSD---  233 (393)
Q Consensus       159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~---  233 (393)
                      ++.++ ...+.    |. -+-++.|..++.|.|..+.+.                 .+.|-.++.... ....+...   
T Consensus       346 v~~~~P~~t~~----GH-~g~V~alk~n~tg~LLaS~Sd-----------------D~TlkiWs~~~~~~~~~l~~Hske  403 (524)
T KOG0273|consen  346 VGEDRPVKTFI----GH-HGEVNALKWNPTGSLLASCSD-----------------DGTLKIWSMGQSNSVHDLQAHSKE  403 (524)
T ss_pred             ecCCCcceeee----cc-cCceEEEEECCCCceEEEecC-----------------CCeeEeeecCCCcchhhhhhhccc
Confidence            66555 32222    21 134678999999988887532                 233333332211 11111000   


Q ss_pred             ----ccCC-CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhh
Q 016199          234 ----LYFA-NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDL  308 (393)
Q Consensus       234 ----l~~~-ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~  308 (393)
                          ...| +.+.-.+.......+...++.+..|++...  .....|++... ---.+++.++|++...-...       
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f~kH~~-pVysvafS~~g~ylAsGs~d-------  473 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTLMKHQE-PVYSVAFSPNGRYLASGSLD-------  473 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEeeccCCC-ceEEEEecCCCcEEEecCCC-------
Confidence                0111 222222333345555666788888887522  12333443211 12357889999866543322       


Q ss_pred             hhcCcchhhhhhhhhhhhCCCCCCCCCceEEEEC-CCCcEEEEeeCCCCCccEEE-EEeCCEEEEEecCCCeEEEEeCC
Q 016199          309 AYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVD-LDGKPIAHYYDPEMSLISSA-IKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       309 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~d~~~~~~~~~-~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                                                 ++|...+ +.|++++.+.+...  +..+ -..+|....++.....+..+|+.
T Consensus       474 ---------------------------g~V~iws~~~~~l~~s~~~~~~--Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  474 ---------------------------GCVHIWSTKTGKLVKSYQGTGG--IFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ---------------------------CeeEeccccchheeEeecCCCe--EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence                                       4566665 45888888886542  1111 12345666677777777777764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.19  E-value=0.12  Score=54.33  Aligned_cols=172  Identities=15%  Similarity=0.196  Sum_probs=102.7

Q ss_pred             CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc---eEEEe
Q 016199           93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS---TVLLT  168 (393)
Q Consensus        93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g---~~~l~  168 (393)
                      +++.+.+++.++.|.++....++.+..+..+.   .....++++.+|      +..++.. +.+|-.++.+.   ...+.
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft---lp~r~~~v~g~g------~~iaagsdD~~vK~~~~~D~s~~~~lr  135 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT---LPIRDLAVSGSG------KMIAAGSDDTAVKLLNLDDSSQEKVLR  135 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeeeee---ccceEEEEecCC------cEEEeecCceeEEEEeccccchheeec
Confidence            44467888889999999887665333333332   235678999999      6655544 44565565432   22221


Q ss_pred             eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc----C-----CCc
Q 016199          169 DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY----F-----ANG  239 (393)
Q Consensus       169 ~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~----~-----~ng  239 (393)
                       ..++.    +-.|.++|+|++....                 +.+|.|+.||.+++......+++.    +     -+-
T Consensus       136 -gh~ap----Vl~l~~~p~~~fLAvs-----------------s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~  193 (933)
T KOG1274|consen  136 -GHDAP----VLQLSYDPKGNFLAVS-----------------SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTR  193 (933)
T ss_pred             -ccCCc----eeeeeEcCCCCEEEEE-----------------ecCceEEEEEcccchhhhhcccCCccccccccceeee
Confidence             22222    3478999999887764                 567899999998776554443321    1     234


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCeEEECCCCCEEEEE
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d~~G~lwva~  298 (393)
                      ++++|+|..+.+.. ..+.|..|+.++... +. .+.++.- .--..+..++.|.|..+.
T Consensus       194 ~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~-~f-~Lr~~~~ss~~~~~~wsPnG~YiAAs  250 (933)
T KOG1274|consen  194 LAWHPKGGTLAVPP-VDNTVKVYSRKGWEL-QF-KLRDKLSSSKFSDLQWSPNGKYIAAS  250 (933)
T ss_pred             eeecCCCCeEEeec-cCCeEEEEccCCcee-he-eecccccccceEEEEEcCCCcEEeee
Confidence            67999976665554 467888888765310 11 1111111 112346678888755443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.18  E-value=0.035  Score=56.36  Aligned_cols=155  Identities=16%  Similarity=0.091  Sum_probs=89.3

Q ss_pred             eEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC---CCceeeeEECCCCCCCCceEEEEEe-CCCceEEEeC
Q 016199           87 DLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT---GGRPLGIAFANSDPDADRITMIVAD-AYKGLLKISG  161 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~---~~~p~gl~~d~~G~~~~~~~L~v~~-~~~gl~~id~  161 (393)
                      +-+++|+|+.+-+++- +-+|+++.++...   .++.+...   .-....+.|..++     +.++++. ....+..++.
T Consensus       387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~v---k~~~v~~~~~~~~~a~~i~ftid~-----~k~~~~s~~~~~le~~el  458 (691)
T KOG2048|consen  387 CAAISPDGNLIAISTVSRTKIYRLQPDPNV---KVINVDDVPLALLDASAISFTIDK-----NKLFLVSKNIFSLEEFEL  458 (691)
T ss_pred             eeccCCCCCEEEEeeccceEEEEeccCcce---eEEEeccchhhhccceeeEEEecC-----ceEEEEecccceeEEEEe
Confidence            4678899997777764 5589999887632   12222111   1123445555444     1444443 3444666665


Q ss_pred             Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc-CCC
Q 016199          162 NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY-FAN  238 (393)
Q Consensus       162 ~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~-~~n  238 (393)
                      ++  .+.+........-..+..|++.++|+-+.+-                 +..|.|+.|+.++++.+.+...+. ...
T Consensus       459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~-----------------~t~g~I~v~nl~~~~~~~l~~rln~~vT  521 (691)
T KOG2048|consen  459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAI-----------------STRGQIFVYNLETLESHLLKVRLNIDVT  521 (691)
T ss_pred             cCcchhhhhccccccCCCcceeEEEcCCCCEEEEE-----------------eccceEEEEEcccceeecchhccCccee
Confidence            44  2222211111112346678999999644332                 345689999999988887764443 334


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ..++.|....-++..+.++.++-|++..
T Consensus       522 a~~~~~~~~~~lvvats~nQv~efdi~~  549 (691)
T KOG2048|consen  522 AAAFSPFVRNRLVVATSNNQVFEFDIEA  549 (691)
T ss_pred             eeeccccccCcEEEEecCCeEEEEecch
Confidence            5566655443344455688999999953

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.18  E-value=0.062  Score=55.25  Aligned_cols=107  Identities=14%  Similarity=0.143  Sum_probs=61.1

Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCC-CC-cceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGK-NA-GRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~-~~-~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      +.+||++.++   ..+++..+|...+ +. .....++ ..+..|-|+.+++||++.+.++...+                
T Consensus       284 ~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~----------------  343 (635)
T PRK02888        284 AVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSP----------------  343 (635)
T ss_pred             hhhCCCEEEE---CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCC----------------
Confidence            4456776666   2467888775420 00 1222233 24567999999999997776664321                


Q ss_pred             hhhhhhhCCCCCCCCCceEEEEC-------------CCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          320 GMVVRYLGMPPMGKSSSGVFIVD-------------LDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~d-------------~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                                       .|..+|             ++..++.......-+..+ ....+|+.|.+-+-..-|.+.++++
T Consensus       344 -----------------tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHT-aFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        344 -----------------TVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHT-AFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             -----------------cEEEEEChhhhhhhhccCCccceEEEeeccCCCcceE-EECCCCCEEEeEeecceeEEEehHH
Confidence                             123332             333344444333222222 3345578888888888888888765

>PTZ00420 coronin; Provisional

Probab=97.16  E-value=0.07  Score=55.04  Aligned_cols=159  Identities=9%  Similarity=0.043  Sum_probs=88.5

Q ss_pred             CCCceEEEecCCCEEE-EEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEe
Q 016199           83 KGPEDLLYDAHSKLIY-TGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id  160 (393)
                      ..-.+++|+|++..++ +++.|+.|..|+...+.   ....+. .......++++++|      .++++... +.|..+|
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~---~~~~i~-~~~~V~SlswspdG------~lLat~s~D~~IrIwD  195 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK---RAFQIN-MPKKLSSLKWNIKG------NLLSGTCVGKHMHIID  195 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc---EEEEEe-cCCcEEEEEECCCC------CEEEEEecCCEEEEEE
Confidence            3456789999887554 56779999999987654   122232 23567899999999      77776554 4477778


Q ss_pred             CCc---eEEEeeccCCcc-ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-CeEEEEecCcc
Q 016199          161 GNS---TVLLTDEAEGQK-FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-KETKVLVSDLY  235 (393)
Q Consensus       161 ~~g---~~~l~~~~~g~~-~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-~~~~~~~~~l~  235 (393)
                      +..   ...+. ...+.. ........+.+++..+++....+             .....|..||... ++..... .+.
T Consensus       196 ~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~-------------~~~R~VkLWDlr~~~~pl~~~-~ld  260 (568)
T PTZ00420        196 PRKQEIASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSK-------------NNMREMKLWDLKNTTSALVTM-SID  260 (568)
T ss_pred             CCCCcEEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCC-------------CCccEEEEEECCCCCCceEEE-Eec
Confidence            764   22221 111111 11011112346776666642211             1123577788653 2211111 111


Q ss_pred             -CCCcE--EEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          236 -FANGV--VLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       236 -~~ngi--~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                       .+..+  .++++...+|++..+.+.|..|++..
T Consensus       261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             CCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence             12221  33455447888998999999999853

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.12  E-value=0.33  Score=51.24  Aligned_cols=150  Identities=11%  Similarity=0.116  Sum_probs=87.9

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC-Cc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG-NS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~-~g  163 (393)
                      =..|++|++|..|++...+|-|..|+......+  .+.+...+....+++... +      .+..+...+-+.++.- ++
T Consensus        16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~--P~ti~~~g~~v~~ia~~s-~------~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE--PETIDISGELVSSIACYS-N------HFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             eEEEEEcCCCCEEEEecCCCceEEeecCCcccC--CchhhccCceeEEEeecc-c------ceEEeeccceEEEeeCCCC
Confidence            345899999999999989998888875543111  122211233345666553 3      5666655555666642 22


Q ss_pred             -eE-EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc-cCCCcE
Q 016199          164 -TV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL-YFANGV  240 (393)
Q Consensus       164 -~~-~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l-~~~ngi  240 (393)
                       .. .+. .+.    .-+++++++.+|...++-                 +..-.|-..+......+..+.+. ...-++
T Consensus        87 ~~~~iL~-Rft----lp~r~~~v~g~g~~iaag-----------------sdD~~vK~~~~~D~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   87 EEDTILA-RFT----LPIRDLAVSGSGKMIAAG-----------------SDDTAVKLLNLDDSSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             Cccceee-eee----ccceEEEEecCCcEEEee-----------------cCceeEEEEeccccchheeecccCCceeee
Confidence             11 222 110    124688999999765542                 11224555555444444344443 334689


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .++|.+++|-++. .+|.+..|+++.
T Consensus       145 ~~~p~~~fLAvss-~dG~v~iw~~~~  169 (933)
T KOG1274|consen  145 SYDPKGNFLAVSS-CDGKVQIWDLQD  169 (933)
T ss_pred             eEcCCCCEEEEEe-cCceEEEEEccc
Confidence            9999997776655 589999999864

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.11  E-value=0.00098  Score=39.26  Aligned_cols=28  Identities=18%  Similarity=0.483  Sum_probs=24.7

Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKF  262 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~  262 (393)
                      +..|.|++++++| .+||+|+.++||.+|
T Consensus         1 f~~P~gvav~~~g-~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDG-NIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence            3579999999877 799999999999886

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.11  E-value=0.037  Score=53.27  Aligned_cols=171  Identities=16%  Similarity=0.187  Sum_probs=93.9

Q ss_pred             ceEEEecCCCEEEEEecCCe------EEEEEcCCCCCc-ceee-----eeecCCC--------ceeeeEECCCCCCCCce
Q 016199           86 EDLLYDAHSKLIYTGCEDGW------IKRVTLNDSPAD-SLVH-----NWINTGG--------RPLGIAFANSDPDADRI  145 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~------I~~~~~~~~~~~-~~~~-----~~~~~~~--------~p~gl~~d~~G~~~~~~  145 (393)
                      .+|+++++++.+|+-+.+|.      ++.+......+. ..+.     .+....+        .+.+|++.++|      
T Consensus        23 Sgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g------   96 (326)
T PF13449_consen   23 SGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG------   96 (326)
T ss_pred             eeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC------
Confidence            45888865556777666666      777766541110 0011     1111112        45699998888      


Q ss_pred             EEEEEeCCC-------ceEEEeCCc--eEEE--eecc-------CC-ccccccccEEEcCCCc-EEEEeCCCccchhhhe
Q 016199          146 TMIVADAYK-------GLLKISGNS--TVLL--TDEA-------EG-QKFKLTDGVDVADDGM-IYFTDASNKYYLREYI  205 (393)
Q Consensus       146 ~L~v~~~~~-------gl~~id~~g--~~~l--~~~~-------~g-~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~  205 (393)
                      .+||++-+.       .|++++.+|  ...+  ....       .+ .......+|++.+||. ||+..-+.-.+-.. .
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~-~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP-R  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc-c
Confidence            999997644       599999888  2222  1111       11 1234467899999997 88875432110000 0


Q ss_pred             ehhcccCCCcEEEEEeCCCCe--EE---EEec------CccCCCcEEEcCCCCEEEEEeCC-------CCeEEEEEec
Q 016199          206 LDIFEGKPNGRLLSFDPVTKE--TK---VLVS------DLYFANGVVLSPDQTHLVYCETS-------MRRCRKFYIK  265 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~--~~---~~~~------~l~~~ngi~~s~dg~~l~v~~~~-------~~ri~~~~~~  265 (393)
                      .. ......-+|++||+.+..  ..   ...+      ....+..++..+|++ ++|-|+.       ..+|+++++.
T Consensus       176 ~~-~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~  251 (326)
T PF13449_consen  176 AN-PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLS  251 (326)
T ss_pred             cc-cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEcc
Confidence            00 000112579999987522  22   2222      123345566667775 7888877       2356666654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.11  E-value=0.014  Score=56.01  Aligned_cols=189  Identities=11%  Similarity=0.100  Sum_probs=108.5

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~  161 (393)
                      ..-..++|.|+|+.|-+++.|..=..||..++......   ........+++|.+||      .|.....-..+-++ |.
T Consensus       262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q---EGHs~~v~~iaf~~DG------SL~~tGGlD~~~RvWDl  332 (459)
T KOG0272|consen  262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ---EGHSKGVFSIAFQPDG------SLAATGGLDSLGRVWDL  332 (459)
T ss_pred             hhheeeeecCCCceeeecccccchhhcccccchhhHhh---cccccccceeEecCCC------ceeeccCccchhheeec
Confidence            34455899999998888888886566677665411111   1123457899999999      77665333333333 54


Q ss_pred             C-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          162 N-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       162 ~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                      . |..++.  .+| ...-+.+|+++|+|....|.++               ..+-+||.+-.. ..+..+.........|
T Consensus       333 Rtgr~im~--L~g-H~k~I~~V~fsPNGy~lATgs~---------------Dnt~kVWDLR~r-~~ly~ipAH~nlVS~V  393 (459)
T KOG0272|consen  333 RTGRCIMF--LAG-HIKEILSVAFSPNGYHLATGSS---------------DNTCKVWDLRMR-SELYTIPAHSNLVSQV  393 (459)
T ss_pred             ccCcEEEE--ecc-cccceeeEeECCCceEEeecCC---------------CCcEEEeeeccc-ccceecccccchhhhe
Confidence            3 332322  223 2344679999999987777422               223344444332 2222333334556789


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r  302 (393)
                      .++|+....+++.+..+.+-.|.-.+.  .....++ +..+---.+.+.++|.+.++....|
T Consensus       394 k~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  394 KYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLA-GHEGKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             EecccCCeEEEEcccCcceeeecCCCc--ccchhhc-CCccceEEEEeccCCceEEEeccCc
Confidence            999976677788888887777764322  1122222 1112223455677887766665444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.07  E-value=0.036  Score=53.32  Aligned_cols=143  Identities=13%  Similarity=0.137  Sum_probs=85.8

Q ss_pred             CceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhh
Q 016199          128 GRPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE  203 (393)
Q Consensus       128 ~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~  203 (393)
                      ...=-+.|.++|      +.+...+.   .+++.+..++ ++.. ....|.. ..+--|..+||.+..++.         
T Consensus       225 dEVWfl~FS~nG------kyLAsaSkD~Taiiw~v~~d~~~kl~-~tlvgh~-~~V~yi~wSPDdryLlaC---------  287 (519)
T KOG0293|consen  225 DEVWFLQFSHNG------KYLASASKDSTAIIWIVVYDVHFKLK-KTLVGHS-QPVSYIMWSPDDRYLLAC---------  287 (519)
T ss_pred             CcEEEEEEcCCC------eeEeeccCCceEEEEEEecCcceeee-eeeeccc-CceEEEEECCCCCeEEec---------
Confidence            334456778888      54443222   3466666666 3322 2222321 123457889999877775         


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEEEEec-Cc-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETKVLVS-DL-YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG  281 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g  281 (393)
                              ....-+..+|..+|....... ++ ..+...++.|||.. +|+++.+..|+.++++|+..+.-+-.  ..|.
T Consensus       288 --------g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gv--r~~~  356 (519)
T KOG0293|consen  288 --------GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGV--RDPK  356 (519)
T ss_pred             --------CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhccccc--ccce
Confidence                    223347888988887665433 22 33567889999954 67788889999999998643332211  1121


Q ss_pred             CCCeEEECCCCCEEEEEe
Q 016199          282 LPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       282 ~P~~i~~d~~G~lwva~~  299 (393)
                       --.+++..||.+.+...
T Consensus       357 -v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  357 -VHDLAITYDGKYVLLVT  373 (519)
T ss_pred             -eEEEEEcCCCcEEEEEe
Confidence             23578888998655544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.04  E-value=0.68  Score=50.23  Aligned_cols=181  Identities=9%  Similarity=0.095  Sum_probs=102.4

Q ss_pred             CceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCC-CceEEEeC
Q 016199           85 PEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAY-KGLLKISG  161 (393)
Q Consensus        85 Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~~id~  161 (393)
                      ..++++.+ +++.|.+++.+|.|..|+..+++   ....+....+...++++++ +|      .++++... +.|..+|.
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---~~~~~~~H~~~V~~l~~~p~~~------~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQ---LVTEMKEHEKRVWSIDYSSADP------TLLASGSDDGSVKLWSI  605 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCe---EEEEecCCCCCEEEEEEcCCCC------CEEEEEcCCCEEEEEEC
Confidence            35677776 35678888889999999987643   1333433345678999985 66      55544444 44666776


Q ss_pred             Cc---eEEEeeccCCccccccccEEEc-CCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCcc
Q 016199          162 NS---TVLLTDEAEGQKFKLTDGVDVA-DDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLY  235 (393)
Q Consensus       162 ~g---~~~l~~~~~g~~~~~~~~l~~d-~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~  235 (393)
                      ..   ...+.    ..  ..+..+.+. ++|.++++.                 ...+.|+.||..+.+.  ..+.....
T Consensus       606 ~~~~~~~~~~----~~--~~v~~v~~~~~~g~~latg-----------------s~dg~I~iwD~~~~~~~~~~~~~h~~  662 (793)
T PLN00181        606 NQGVSIGTIK----TK--ANICCVQFPSESGRSLAFG-----------------SADHKVYYYDLRNPKLPLCTMIGHSK  662 (793)
T ss_pred             CCCcEEEEEe----cC--CCeEEEEEeCCCCCEEEEE-----------------eCCCeEEEEECCCCCccceEecCCCC
Confidence            43   22221    11  123455553 457655552                 3457899999865432  22222223


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC----cceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA----GRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~----~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      ....+.+. ++.. +++.+..+.|..|++.....    .....+. ........++++++|.+.++...
T Consensus       663 ~V~~v~f~-~~~~-lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        663 TVSYVRFV-DSST-LVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             CEEEEEEe-CCCE-EEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeC
Confidence            34567775 5644 45666788899998753211    1112221 22223455778888886665543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.03  E-value=0.016  Score=56.54  Aligned_cols=156  Identities=13%  Similarity=0.180  Sum_probs=94.8

Q ss_pred             CCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199           83 KGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id  160 (393)
                      .-|.++-+.|++ +.+++|..+++|..||...+.   .+..+...-+..+.|.|-++|      +-+|...+.+ +..++
T Consensus       300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~i~F~~~g------~rFissSDdks~riWe  370 (503)
T KOG0282|consen  300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILDITFVDEG------RRFISSSDDKSVRIWE  370 (503)
T ss_pred             CCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheeeeEEccCC------ceEeeeccCccEEEEE
Confidence            458888899988 667788899999999988654   244554445667889998899      7777766555 33333


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC----eEEEEec--Cc
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK----ETKVLVS--DL  234 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~----~~~~~~~--~l  234 (393)
                      -.- .+............+-.+...|.|..+.+.                 +-...++.|.....    +.+.+..  --
T Consensus       371 ~~~-~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ-----------------s~dN~i~ifs~~~~~r~nkkK~feGh~va  432 (503)
T KOG0282|consen  371 NRI-PVPIKNIADPEMHTMPCLTLHPNGKWFAAQ-----------------SMDNYIAIFSTVPPFRLNKKKRFEGHSVA  432 (503)
T ss_pred             cCC-CccchhhcchhhccCcceecCCCCCeehhh-----------------ccCceEEEEecccccccCHhhhhcceecc
Confidence            221 111111111122234467777877766553                 22234555543211    0011111  12


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .++-.+.+||||++| ++....++++.|+.+.
T Consensus       433 Gys~~v~fSpDG~~l-~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTL-CSGDSDGKVNFWDWKT  463 (503)
T ss_pred             CceeeEEEcCCCCeE-EeecCCccEEEeechh
Confidence            456778899999765 6666789999999864

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=97.01  E-value=0.13  Score=52.57  Aligned_cols=214  Identities=11%  Similarity=0.088  Sum_probs=117.9

Q ss_pred             CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccC
Q 016199           93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAE  172 (393)
Q Consensus        93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~  172 (393)
                      ++.+|.+|..|+.|.++...+..  . ...+........++....++      .+.-+.++..+.++-. |  .+....+
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~~~~--P-~~~LkgH~snVC~ls~~~~~------~~iSgSWD~TakvW~~-~--~l~~~l~  137 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLSQAE--P-LYTLKGHKSNVCSLSIGEDG------TLISGSWDSTAKVWRI-G--ELVYSLQ  137 (745)
T ss_pred             cCcceEeecccceEEEEecCCCC--c-hhhhhccccceeeeecCCcC------ceEecccccceEEecc-h--hhhcccC
Confidence            44468899999999988876542  0 12222223456778888888      7666655544333322 1  1111233


Q ss_pred             CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEE
Q 016199          173 GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       173 g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~  252 (393)
                      +.. ..+..++.-+++ .|+|-                 ++...|..+. .....+++........|+++-+++.++  +
T Consensus       138 gH~-asVWAv~~l~e~-~~vTg-----------------saDKtIklWk-~~~~l~tf~gHtD~VRgL~vl~~~~fl--S  195 (745)
T KOG0301|consen  138 GHT-ASVWAVASLPEN-TYVTG-----------------SADKTIKLWK-GGTLLKTFSGHTDCVRGLAVLDDSHFL--S  195 (745)
T ss_pred             Ccc-hheeeeeecCCC-cEEec-----------------cCcceeeecc-CCchhhhhccchhheeeeEEecCCCeE--e
Confidence            333 234566666776 66763                 2233344443 334445554455567889988886543  5


Q ss_pred             eCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCC
Q 016199          253 ETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMG  332 (393)
Q Consensus       253 ~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  332 (393)
                      ....+-|.+++++|+-.   .... +...+--.|....++.+.|++.+.|+                             
T Consensus       196 csNDg~Ir~w~~~ge~l---~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrt-----------------------------  242 (745)
T KOG0301|consen  196 CSNDGSIRLWDLDGEVL---LEMH-GHTNFVYSISMALSDGLIVSTGEDRT-----------------------------  242 (745)
T ss_pred             ecCCceEEEEeccCcee---eeee-ccceEEEEEEecCCCCeEEEecCCce-----------------------------
Confidence            55667788888766521   1111 11112233444455668888887643                             


Q ss_pred             CCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEE
Q 016199          333 KSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILH  381 (393)
Q Consensus       333 ~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~  381 (393)
                           +...+ +++..+.+.-|....-+.-.-.+|.+++|+  ++++.|
T Consensus       243 -----lriW~-~~e~~q~I~lPttsiWsa~~L~NgDIvvg~--SDG~Vr  283 (745)
T KOG0301|consen  243 -----LRIWK-KDECVQVITLPTTSIWSAKVLLNGDIVVGG--SDGRVR  283 (745)
T ss_pred             -----EEEee-cCceEEEEecCccceEEEEEeeCCCEEEec--cCceEE
Confidence                 33333 347777777776332233334578888885  444444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=96.97  E-value=0.31  Score=45.62  Aligned_cols=150  Identities=15%  Similarity=0.157  Sum_probs=83.4

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc--ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD--SLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~--~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~i  159 (393)
                      ..-.+++|+.||+.|-+.+.|+.|..|+.++-...  .....-. ..+.|..++|.+|-.     .+.|.-. +..|+.+
T Consensus        87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~-----s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCK-----SVVVSVKRGNKLCVY  160 (420)
T ss_pred             CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcc-----eEEEEEccCCEEEEE
Confidence            45678999999998877788888888887753210  0000001 124688899998871     2333322 3334444


Q ss_pred             --eC--Cc-eEEEeeccCCcccc---ccc--cEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          160 --SG--NS-TVLLTDEAEGQKFK---LTD--GVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       160 --d~--~g-~~~l~~~~~g~~~~---~~~--~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                        +.  +| ........+...+.   .+.  ++-++ ++..|+..++.                .-.|..|+.++..+..
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~----------------dt~i~lw~lkGq~L~~  223 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASL----------------DTKICLWDLKGQLLQS  223 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecC----------------CCcEEEEecCCceeee
Confidence              32  33 11111111111111   111  22222 34455554332                2258889988655666


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCC
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETS  255 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~  255 (393)
                      +-+.......-+++|||+++.++...
T Consensus       224 idtnq~~n~~aavSP~GRFia~~gFT  249 (420)
T KOG2096|consen  224 IDTNQSSNYDAAVSPDGRFIAVSGFT  249 (420)
T ss_pred             eccccccccceeeCCCCcEEEEecCC
Confidence            65555556778899999998887754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.96  E-value=0.12  Score=49.41  Aligned_cols=142  Identities=12%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             CEEEEEec-----CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-----Cc-----eEEE
Q 016199           95 KLIYTGCE-----DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-----KG-----LLKI  159 (393)
Q Consensus        95 ~~L~~~~~-----~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-----~g-----l~~i  159 (393)
                      +++|+-+.     .++++.+|.+.+.    +......+-.+. +.++++|     +.+|+++.+     +|     |..+
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k----~lGmi~~g~~~~-~~~spdg-----k~~y~a~T~~sR~~rG~RtDvv~~~   72 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGK----LLGMIDTGFLGN-VALSPDG-----KTIYVAETFYSRGTRGERTDVVEIW   72 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTE----EEEEEEEESSEE-EEE-TTS-----SEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEEECCccccccceEEEEECCCCc----EEEEeecccCCc-eeECCCC-----CEEEEEEEEEeccccccceeEEEEE
Confidence            35666542     3589999987665    444444333333 6677887     479988763     22     5667


Q ss_pred             eCCceEEEee-ccCCc----cccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          160 SGNSTVLLTD-EAEGQ----KFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       160 d~~g~~~l~~-~~~g~----~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      |.+++..... .....    .....+.++...|| .+||.+.                ++.-.|-..|...+++...   
T Consensus        73 D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~----------------TPa~SVtVVDl~~~kvv~e---  133 (342)
T PF06433_consen   73 DTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF----------------TPATSVTVVDLAAKKVVGE---  133 (342)
T ss_dssp             ETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE----------------SSSEEEEEEETTTTEEEEE---
T ss_pred             ecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc----------------CCCCeEEEEECCCCceeee---
Confidence            8776211110 11111    12345677888888 6888763                4566799999988776432   


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +..|-+..+-|-+..-+.+-+..+++..+.++
T Consensus       134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen  134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             EEGTSEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred             ecCCCEEEEEecCCCceEEEecCCceEEEEEC
Confidence            23344433333332223455567888888887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.95  E-value=0.097  Score=51.79  Aligned_cols=203  Identities=13%  Similarity=0.125  Sum_probs=112.3

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCC-cceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPA-DSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~-~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      +.-..+++|+.|-+++.|+.|-.|..||.++-.. ...+..+.+. +.....+.+...|     +.|++.......-.+|
T Consensus       168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-----~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-----DQILVVSGSAQAKLLD  242 (641)
T ss_pred             eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-----CeEEEEecCcceeEEc
Confidence            4455689999999999999999999999876431 0112222221 2335678888877     2455554444456678


Q ss_pred             CCceEEEe--e---------ccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          161 GNSTVLLT--D---------EAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       161 ~~g~~~l~--~---------~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      .+|.+..-  .         ...|. ....+...+.|+. ..+++.+.               .++-|+|-.+...++.+
T Consensus       243 RdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~k~~FlT~s~---------------DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  243 RDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDNKEEFLTCSY---------------DGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             cCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCcccceEEecC---------------CCcEEEEecCCchhhee
Confidence            88832221  1         11111 1123344556654 45555421               23345555443323444


Q ss_pred             EEec----Cc-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCC-CCCeEEECCCCCEEEEEec
Q 016199          229 VLVS----DL-YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE--TLPG-LPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       229 ~~~~----~l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~--~l~g-~P~~i~~d~~G~lwva~~~  300 (393)
                      ++..    +. ..+..-++++||. ++.+.+.++.|..|+. +...-.....+.  .++| --..|.++.+|+++.+-..
T Consensus       307 Vik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~  384 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF  384 (641)
T ss_pred             EEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence            4322    22 2356678999996 5778888999999886 322222222221  2332 1356889999998876443


Q ss_pred             Ccc-hhhhh
Q 016199          301 EFS-TYWDL  308 (393)
Q Consensus       301 ~r~-~~~~~  308 (393)
                      ... .+||+
T Consensus       385 D~tLKvWDL  393 (641)
T KOG0772|consen  385 DDTLKVWDL  393 (641)
T ss_pred             CCceeeeec
Confidence            322 35554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.94  E-value=0.21  Score=49.50  Aligned_cols=185  Identities=13%  Similarity=0.151  Sum_probs=101.7

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee----------ecCCCce---eeeEECCCCCCCCceEEEEEeC
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW----------INTGGRP---LGIAFANSDPDADRITMIVADA  152 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~----------~~~~~~p---~gl~~d~~G~~~~~~~L~v~~~  152 (393)
                      .++.+.+.|+.+.+.+.......+|.++..    +-.+          .++.+..   ..-++.+..     +..++..+
T Consensus       218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~----~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-----k~~FlT~s  288 (641)
T KOG0772|consen  218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFE----IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-----KEEFLTCS  288 (641)
T ss_pred             ceeeecCCCCeEEEEecCcceeEEccCCce----eeeeeccchhhhhhhccCCceeeeeccccccCc-----ccceEEec
Confidence            447788888877777766667777766643    2221          1222333   333456654     13444445


Q ss_pred             CCceE-EEeCCc----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          153 YKGLL-KISGNS----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       153 ~~gl~-~id~~g----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      +.|-+ .++.+.    .+++.....+..--.+...++++||.++.+-                 -..|.|-.|+..+...
T Consensus       289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag-----------------c~DGSIQ~W~~~~~~v  351 (641)
T KOG0772|consen  289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG-----------------CLDGSIQIWDKGSRTV  351 (641)
T ss_pred             CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhc-----------------ccCCceeeeecCCccc
Confidence            66644 445433    4555443333221235566889999875441                 2346677777532222


Q ss_pred             E--EEecC----ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCC-CeEEECCCCCEEEEEe
Q 016199          228 K--VLVSD----LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLP-DNIRYDGEGHYLIALA  299 (393)
Q Consensus       228 ~--~~~~~----l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P-~~i~~d~~G~lwva~~  299 (393)
                      .  ....+    ..-...|.|+.||+. +.+-...+.+-.|++...+. -..++ .+++ .+| .+.+++++..+.++-.
T Consensus       352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kk-pL~~~-tgL~t~~~~tdc~FSPd~kli~TGt  428 (641)
T KOG0772|consen  352 RPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKK-PLNVR-TGLPTPFPGTDCCFSPDDKLILTGT  428 (641)
T ss_pred             ccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeecccccc-chhhh-cCCCccCCCCccccCCCceEEEecc
Confidence            1  11222    234678999999964 45666678888899864321 11112 2343 233 4578999998777543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.031  Score=49.24  Aligned_cols=100  Identities=15%  Similarity=0.228  Sum_probs=63.1

Q ss_pred             eeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhee
Q 016199          130 PLGIAFANSDPDADRITMIVADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYIL  206 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~  206 (393)
                      -=|++.|.+       +||.++...-+..-||+.   ...+.-..+|.|....|.+..- ||.+|.---           
T Consensus       133 GWgLt~d~~-------~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw-----------  193 (262)
T COG3823         133 GWGLTSDDK-------NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVW-----------  193 (262)
T ss_pred             ceeeecCCc-------ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeee-----------
Confidence            346666643       699987666677778876   1222224567776666666433 554443210           


Q ss_pred             hhcccCCCcEEEEEeCCCCeEEEEec-------------CccCCCcEEEcCCCCEEEEEeC
Q 016199          207 DIFEGKPNGRLLSFDPVTKETKVLVS-------------DLYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       207 ~~~e~~~~g~l~~~d~~t~~~~~~~~-------------~l~~~ngi~~s~dg~~l~v~~~  254 (393)
                            .+.++.|++|++|++....+             .....||||..++++.+|++.-
T Consensus       194 ------~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         194 ------QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             ------eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence                  01279999999998755321             1346799999999988888754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.92  E-value=0.21  Score=48.96  Aligned_cols=194  Identities=12%  Similarity=0.155  Sum_probs=105.8

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCceE
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNSTV  165 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~~  165 (393)
                      +++++|..-.=++.+..-++..|+..+..-   .+.+..-.....++.|-.||      +|+.|....| +-.+|.+...
T Consensus        31 sl~fsp~~P~d~aVt~S~rvqly~~~~~~~---~k~~srFk~~v~s~~fR~DG------~LlaaGD~sG~V~vfD~k~r~  101 (487)
T KOG0310|consen   31 SLCFSPKHPYDFAVTSSVRVQLYSSVTRSV---RKTFSRFKDVVYSVDFRSDG------RLLAAGDESGHVKVFDMKSRV  101 (487)
T ss_pred             eEecCCCCCCceEEecccEEEEEecchhhh---hhhHHhhccceeEEEeecCC------eEEEccCCcCcEEEeccccHH
Confidence            355555322112333344666666554320   12122223457889999999      8877755556 4455754310


Q ss_pred             EEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEc
Q 016199          166 LLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLS  243 (393)
Q Consensus       166 ~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s  243 (393)
                      .+. ...... .-++-+.+.+.+ .++++-                 +..+-+..+|..+..... +...-.+....+++
T Consensus       102 iLR-~~~ah~-apv~~~~f~~~d~t~l~s~-----------------sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~  162 (487)
T KOG0310|consen  102 ILR-QLYAHQ-APVHVTKFSPQDNTMLVSG-----------------SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS  162 (487)
T ss_pred             HHH-HHhhcc-CceeEEEecccCCeEEEec-----------------CCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence            111 111111 113455666655 444441                 222334445666555432 22234456677888


Q ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-CeEEECCCCCEEEEEecCcchhhhhhhcC
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-DNIRYDGEGHYLIALATEFSTYWDLAYRY  312 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-~~i~~d~~G~lwva~~~~r~~~~~~~~~~  312 (393)
                      |-.+++++++...+.|..||..... .....+-   -|.| ..+..-+.|.+.+.+.++.-..||++...
T Consensus       163 ~~~~hivvtGsYDg~vrl~DtR~~~-~~v~eln---hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~  228 (487)
T KOG0310|consen  163 PANDHIVVTGSYDGKVRLWDTRSLT-SRVVELN---HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG  228 (487)
T ss_pred             cCCCeEEEecCCCceEEEEEeccCC-ceeEEec---CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc
Confidence            8888999999999999999975321 1111221   2334 56777778888887777777788887544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.90  E-value=0.032  Score=57.80  Aligned_cols=156  Identities=12%  Similarity=0.157  Sum_probs=98.6

Q ss_pred             CCCceEEEecCCCEEE-EEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE-EEe
Q 016199           83 KGPEDLLYDAHSKLIY-TGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL-KIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~-~id  160 (393)
                      ..-.+++|.|-.++.| .|+-||++..|++.+.+    +..|.+...-..++++.|+|     +..+|| ...|.. .|+
T Consensus       410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdG-----k~avIG-t~~G~C~fY~  479 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDG-----KGAVIG-TFNGYCRFYD  479 (712)
T ss_pred             CeeEEEEecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCC-----ceEEEE-EeccEEEEEE
Confidence            3456788999555455 56679999999988776    77776666667899999999     235666 556654 456


Q ss_pred             CCceEEE----eeccCC--ccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          161 GNSTVLL----TDEAEG--QKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       161 ~~g~~~l----~~~~~g--~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      ..+.+..    .....+  ..-.-+.|+.+.+..  .+.||                  +...+|..||..+..+.....
T Consensus       480 t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT------------------SnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  480 TEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT------------------SNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             ccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe------------------cCCCceEEEeccchhhhhhhc
Confidence            6551111    111111  111236688777533  58888                  445688899975555444333


Q ss_pred             Ccc---CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          233 DLY---FANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       233 ~l~---~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      +..   ...--.|+.||++|+. .+....++.|+.+..
T Consensus       542 G~~n~~SQ~~Asfs~Dgk~IVs-~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  542 GFRNTSSQISASFSSDGKHIVS-ASEDSWVYIWKNDSF  578 (712)
T ss_pred             ccccCCcceeeeEccCCCEEEE-eecCceEEEEeCCCC
Confidence            332   2344568889987754 457888999887543

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.89  E-value=0.013  Score=59.84  Aligned_cols=78  Identities=21%  Similarity=0.278  Sum_probs=48.5

Q ss_pred             ccccccccEEEcCCCcEEEEeCCCccchh-------hheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcC
Q 016199          174 QKFKLTDGVDVADDGMIYFTDASNKYYLR-------EYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSP  244 (393)
Q Consensus       174 ~~~~~~~~l~~d~dG~l~~td~~~~~~~~-------~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~  244 (393)
                      ..+..|+.|+++++|+|||+.-.......       ...+.+....+.. ++.+++.+++++.+...  -....|++++|
T Consensus       433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp  511 (524)
T PF05787_consen  433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP  511 (524)
T ss_pred             CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence            34678999999999999998533221100       0001111111111 55667788888777543  34568999999


Q ss_pred             CCCEEEEE
Q 016199          245 DQTHLVYC  252 (393)
Q Consensus       245 dg~~l~v~  252 (393)
                      |++.||++
T Consensus       512 Dg~tlFvn  519 (524)
T PF05787_consen  512 DGRTLFVN  519 (524)
T ss_pred             CCCEEEEE
Confidence            99999885

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=96.87  E-value=0.037  Score=53.08  Aligned_cols=177  Identities=10%  Similarity=0.175  Sum_probs=101.7

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eCCc-
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SGNS-  163 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~~g-  163 (393)
                      .+.+.|+|++|.+|+..|..-.|+...-.    ++.+. .......+|....+|      ...|....+|..++ +++- 
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fn----FEtilQaHDs~Vr~m~ws~~g------~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFN----FETILQAHDSPVRTMKWSHNG------TWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceee----HHHHhhhhcccceeEEEccCC------CEEEEcCCCceEEecccchh
Confidence            47899999999999999988877754322    22221 112345788888898      66555445565555 4432 


Q ss_pred             -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEecCccCCCcEE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSDLYFANGVV  241 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~~~l~~~ngi~  241 (393)
                       ++..    .......+.++++++....+++.                 +..|.|..+|..-.+-+ .+.....-+..++
T Consensus       171 nVk~~----~ahh~eaIRdlafSpnDskF~t~-----------------SdDg~ikiWdf~~~kee~vL~GHgwdVksvd  229 (464)
T KOG0284|consen  171 NVKII----QAHHAEAIRDLAFSPNDSKFLTC-----------------SDDGTIKIWDFRMPKEERVLRGHGWDVKSVD  229 (464)
T ss_pred             hhHHh----hHhhhhhhheeccCCCCceeEEe-----------------cCCCeEEEEeccCCchhheeccCCCCcceec
Confidence             2111    11112345689999977777775                 34567777775433333 3333344577888


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCCCCcce-eeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGRV-EKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~-~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      +.|.. .++++....+-|-.+|.   +.++- -.+. .....--.+.+.++|++..+..
T Consensus       230 WHP~k-gLiasgskDnlVKlWDp---rSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~s  283 (464)
T KOG0284|consen  230 WHPTK-GLIASGSKDNLVKLWDP---RSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGS  283 (464)
T ss_pred             cCCcc-ceeEEccCCceeEeecC---CCcchhhhhh-hccceEEEEEEcCCCCeeEEcc
Confidence            88876 56677776664444554   32221 1111 0011122356778887666544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.86  E-value=0.061  Score=50.00  Aligned_cols=143  Identities=15%  Similarity=0.210  Sum_probs=84.5

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce-
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST-  164 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~-  164 (393)
                      .++.|.|....|..++.|+.|..||..........+.+.. ......|.|.|.|     +.|.+|+...-+..+|-++. 
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsG-----efllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSG-----EFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCC-----ceEEEecCCCceeEEecccee
Confidence            4577888887676777899888888754332222333322 3456899999999     24566643334455676662 


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-E--ecCccCCCcEE
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-L--VSDLYFANGVV  241 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~--~~~l~~~ngi~  241 (393)
                      ..+....+......++.+...+.|+||++-                 +..|.|-.||-.+++... +  +.+....-...
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTa-----------------SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~  312 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGSLYVTA-----------------SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV  312 (430)
T ss_pred             EeeecCcccccccceeEEEecCCccEEEEe-----------------ccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence            222223333334557788899999999995                 445678888866544211 1  11222222344


Q ss_pred             EcCCCCEEEE
Q 016199          242 LSPDQTHLVY  251 (393)
Q Consensus       242 ~s~dg~~l~v  251 (393)
                      |+.+|++++-
T Consensus       313 Ftkn~kyiLs  322 (430)
T KOG0640|consen  313 FTKNGKYILS  322 (430)
T ss_pred             EccCCeEEee
Confidence            6777765543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.86  E-value=0.12  Score=45.74  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=62.7

Q ss_pred             cccEEEcCCCcEE-EEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--
Q 016199          179 TDGVDVADDGMIY-FTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--  255 (393)
Q Consensus       179 ~~~l~~d~dG~l~-~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--  255 (393)
                      +++++..|+|+-+ +.. +               .....+..||.+...+..+.  -...|.|.++|+|+++.+++..  
T Consensus        62 I~~~~WsP~g~~favi~-g---------------~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~  123 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIY-G---------------SMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL  123 (194)
T ss_pred             eEEEEECcCCCEEEEEE-c---------------cCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCC
Confidence            6789999999543 332 1               11236788887655444443  2456889999999999888754  


Q ss_pred             CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          256 MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       256 ~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+.|..||.+..     +.+..........++.+++|++.++..
T Consensus       124 ~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  124 NGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             CcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEEEE
Confidence            457888887521     222211111245678899999887665

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.84  E-value=0.25  Score=48.47  Aligned_cols=165  Identities=13%  Similarity=0.164  Sum_probs=88.5

Q ss_pred             eeeEECCCCCCCCceEEEEEeCCC--------------ceEEEeCCceEEEeeccCC-----ccccccccEEEcCC-CcE
Q 016199          131 LGIAFANSDPDADRITMIVADAYK--------------GLLKISGNSTVLLTDEAEG-----QKFKLTDGVDVADD-GMI  190 (393)
Q Consensus       131 ~gl~~d~~G~~~~~~~L~v~~~~~--------------gl~~id~~g~~~l~~~~~g-----~~~~~~~~l~~d~d-G~l  190 (393)
                      ..|++++||      +|||.....              .+++++.++.........+     ...+++.+++++|. |.|
T Consensus       180 ~~l~f~pDG------~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~L  253 (399)
T COG2133         180 GRLVFGPDG------KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGAL  253 (399)
T ss_pred             ccEEECCCC------cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcE
Confidence            469999999      999996543              1555555541011001111     12467889999996 899


Q ss_pred             EEEeCCCccch-hhheehhcccCCCcEEEEE-----eCCC---CeEEE-E------ecCccCCCcEEEcCCC------CE
Q 016199          191 YFTDASNKYYL-REYILDIFEGKPNGRLLSF-----DPVT---KETKV-L------VSDLYFANGVVLSPDQ------TH  248 (393)
Q Consensus       191 ~~td~~~~~~~-~~~~~~~~e~~~~g~l~~~-----d~~t---~~~~~-~------~~~l~~~ngi~~s~dg------~~  248 (393)
                      |+++-+.+..+ .+++..+-.+...|==++|     |..-   ..... .      ...-.-|.|++|....      ..
T Consensus       254 w~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~  333 (399)
T COG2133         254 WTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD  333 (399)
T ss_pred             EEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc
Confidence            99986653221 1221111111111111222     1100   00000 0      0111235788887431      25


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCeEEECCCCCEEEEEecC
Q 016199          249 LVYCETSMRRCRKFYIKGKNAGRVEKFIE-TLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       249 l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ++|..-..-.+.+.+++++..-..+.|+. ...+.|.++++.+||.++|++..+
T Consensus       334 lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~  387 (399)
T COG2133         334 LFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQG  387 (399)
T ss_pred             EEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCC
Confidence            77877666667777766552222333332 234789999999999999998753

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.81  E-value=0.44  Score=44.39  Aligned_cols=195  Identities=11%  Similarity=0.102  Sum_probs=106.6

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhe
Q 016199          129 RPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~  205 (393)
                      ...++.++++-     +.|+.... ...|+.++.+|  +..+.  ..+  +..+.+|..-.+|..-++|.          
T Consensus        87 nvS~LTynp~~-----rtLFav~n~p~~iVElt~~GdlirtiP--L~g--~~DpE~Ieyig~n~fvi~dE----------  147 (316)
T COG3204          87 NVSSLTYNPDT-----RTLFAVTNKPAAIVELTKEGDLIRTIP--LTG--FSDPETIEYIGGNQFVIVDE----------  147 (316)
T ss_pred             cccceeeCCCc-----ceEEEecCCCceEEEEecCCceEEEec--ccc--cCChhHeEEecCCEEEEEeh----------
Confidence            47789999876     24554432 34588889888  33321  122  34456777777777667752          


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEE-----ecC----ccCCCcEEEcCCCCEEEEEeC-CCCeEEEEEecCCCCcceeee
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVL-----VSD----LYFANGVVLSPDQTHLVYCET-SMRRCRKFYIKGKNAGRVEKF  275 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~-----~~~----l~~~ngi~~s~dg~~l~v~~~-~~~ri~~~~~~g~~~~~~~~~  275 (393)
                           ....-.++++|+++.....-     +..    ...--|++.+++++.+||+-. .--+|+.++.....   ....
T Consensus       148 -----R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~  219 (316)
T COG3204         148 -----RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVH  219 (316)
T ss_pred             -----hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccc
Confidence                 22233355667665432211     111    223458999999887777643 33356665532110   1111


Q ss_pred             eccCCCC--------CCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCc
Q 016199          276 IETLPGL--------PDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGK  346 (393)
Q Consensus       276 ~~~l~g~--------P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~  346 (393)
                      +...|..        -.++.+|+. |+++|=..++                                  ..|+.+|.+|+
T Consensus       220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES----------------------------------r~l~Evd~~G~  265 (316)
T COG3204         220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES----------------------------------RRLLEVDLSGE  265 (316)
T ss_pred             cccCcccccceEeeccccceecCCCCcEEEEecCC----------------------------------ceEEEEecCCC
Confidence            1011110        124556643 5677766554                                  46999999999


Q ss_pred             EEEEeeC--CC-------CCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199          347 PIAHYYD--PE-------MSLISSAIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       347 ~~~~~~d--~~-------~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                      ++..+..  +.       .+.--.+..++|.||+.| ..+..+++-..
T Consensus       266 ~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS-EPnlfy~F~~~  312 (316)
T COG3204         266 VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS-EPNLFYRFTPQ  312 (316)
T ss_pred             eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe-cCCcceecccC
Confidence            8766542  22       122223455679999998 34455666544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=96.78  E-value=0.35  Score=47.91  Aligned_cols=147  Identities=16%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g  163 (393)
                      |+.++. ..++ ||+|+....|.+=+.+++.   ......+ +..--|++..++.      ++++.....+ +..++...
T Consensus       332 iRtv~e-~~~d-i~vGTtrN~iL~Gt~~~~f---~~~v~gh-~delwgla~hps~------~q~~T~gqdk~v~lW~~~k  399 (626)
T KOG2106|consen  332 IRTVAE-GKGD-ILVGTTRNFILQGTLENGF---TLTVQGH-GDELWGLATHPSK------NQLLTCGQDKHVRLWNDHK  399 (626)
T ss_pred             eeEEec-CCCc-EEEeeccceEEEeeecCCc---eEEEEec-ccceeeEEcCCCh------hheeeccCcceEEEccCCc
Confidence            333443 3344 9999988878876666543   0222222 3456789999877      6777655444 44445322


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEc
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLS  243 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s  243 (393)
                      . .+....+.    -+..++++|.|.+.++                  +..|+.+.+|.++..+..+..+....+.+.++
T Consensus       400 ~-~wt~~~~d----~~~~~~fhpsg~va~G------------------t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys  456 (626)
T KOG2106|consen  400 L-EWTKIIED----PAECADFHPSGVVAVG------------------TATGRWFVLDTETQDLVTIHTDNEQLSVVRYS  456 (626)
T ss_pred             e-eEEEEecC----ceeEeeccCcceEEEe------------------eccceEEEEecccceeEEEEecCCceEEEEEc
Confidence            1 12111111    1346788999977676                  45789999999887666665555666889999


Q ss_pred             CCCCEEEEEeCCCCeEEEEEecCC
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      |||.++-+ .+.++.|+.|.++..
T Consensus       457 p~G~~lAv-gs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  457 PDGAFLAV-GSHDNHIYIYRVSAN  479 (626)
T ss_pred             CCCCEEEE-ecCCCeEEEEEECCC
Confidence            99976644 567888999988743

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.77  E-value=0.011  Score=59.12  Aligned_cols=74  Identities=22%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEE
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~  252 (393)
                      -+..|++|++|+.|+||+..-...-....+    ..  +-..++.=+++++++..+...  -+...|.+++||++.+||+
T Consensus       498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~----~~--G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNR----FR--GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             cccCCCceEECCCCCEEEEecCCCCccCcc----cc--cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence            367799999999999999754332111110    00  111334446677777666543  2456899999999999887


Q ss_pred             eC
Q 016199          253 ET  254 (393)
Q Consensus       253 ~~  254 (393)
                      -.
T Consensus       572 vQ  573 (616)
T COG3211         572 VQ  573 (616)
T ss_pred             ec
Confidence            54

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.74  E-value=0.82  Score=46.60  Aligned_cols=42  Identities=14%  Similarity=0.244  Sum_probs=28.5

Q ss_pred             ceEEEECC-CCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCCC
Q 016199          336 SGVFIVDL-DGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHHR  377 (393)
Q Consensus       336 ~~v~~~d~-~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~~  377 (393)
                      +.|+.+|. +|+++..++.+. ...--.+...+|++|++...+.
T Consensus       416 G~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~  459 (488)
T cd00216         416 GYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMVGG  459 (488)
T ss_pred             CeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEecC
Confidence            46899996 689988887654 2111222356899999987663

The alignment model contains an 8-bladed beta-propeller.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.74  E-value=0.23  Score=48.38  Aligned_cols=133  Identities=20%  Similarity=0.277  Sum_probs=78.5

Q ss_pred             cEEEEEeCCCCeEEEEec-------CccCCCcEEEcC---CCCEEEEEeCCCCeEEEEEecCCCCcc-----eeeeeccC
Q 016199          215 GRLLSFDPVTKETKVLVS-------DLYFANGVVLSP---DQTHLVYCETSMRRCRKFYIKGKNAGR-----VEKFIETL  279 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~~-------~l~~~ngi~~s~---dg~~l~v~~~~~~ri~~~~~~g~~~~~-----~~~~~~~l  279 (393)
                      -++|++|+.++.++.+.+       .+.-+.|+|+..   +|+...+.....+++..|.+.....+.     .+.|  .+
T Consensus       129 l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~  206 (381)
T PF02333_consen  129 LRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KV  206 (381)
T ss_dssp             EEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-
T ss_pred             EEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cC
Confidence            468999998887776532       344578999853   455444444556889888885322222     2333  35


Q ss_pred             CCCCCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC--C----cEEEEee
Q 016199          280 PGLPDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD--G----KPIAHYY  352 (393)
Q Consensus       280 ~g~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~--g----~~~~~~~  352 (393)
                      +..+.|+++|.. |.+|++.-.                                   .||.+|+.+  +    +.+... 
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE~-----------------------------------~GIW~y~Aep~~~~~~~~v~~~-  250 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEED-----------------------------------VGIWRYDAEPEGGNDRTLVASA-  250 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSCCC-S--EEEEEB-
T ss_pred             CCcceEEEEecccCCEEEecCc-----------------------------------cEEEEEecCCCCCCcceeeecc-
Confidence            567889888765 789998753                                   378888643  2    222221 


Q ss_pred             CCC-----CCccEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 016199          353 DPE-----MSLISSAIKI--GDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       353 d~~-----~~~~~~~~~~--~g~Lyigs~~~~~i~~~~~~  385 (393)
                      +..     ...++.+...  .|+|.++|=.++....|+..
T Consensus       251 ~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~  290 (381)
T PF02333_consen  251 DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE  290 (381)
T ss_dssp             SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred             cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence            221     3344444332  37899988888888888865

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=96.72  E-value=0.054  Score=48.95  Aligned_cols=177  Identities=13%  Similarity=0.175  Sum_probs=97.3

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCCceEEEeCC-c
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYKGLLKISGN-S  163 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~id~~-g  163 (393)
                      ..++|+.|.+.|.+|..+.-+..|+.+....+  .+.+....+...-+.+-. +.      .++-+...+.|..+|-. |
T Consensus       104 k~~af~~ds~~lltgg~ekllrvfdln~p~Ap--p~E~~ghtg~Ir~v~wc~eD~------~iLSSadd~tVRLWD~rTg  175 (334)
T KOG0278|consen  104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--PKEISGHTGGIRTVLWCHEDK------CILSSADDKTVRLWDHRTG  175 (334)
T ss_pred             eeEEecccchhhhccchHHHhhhhhccCCCCC--chhhcCCCCcceeEEEeccCc------eEEeeccCCceEEEEeccC
Confidence            34788888888888876664445555543311  122211122222233333 33      45544333445556643 3


Q ss_pred             --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-Cc-cCCCc
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DL-YFANG  239 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l-~~~ng  239 (393)
                        ++.+-  ..    ..++.+.+.+||++....                  ..+.|.-+|+++-.  .+.. .+ ...+.
T Consensus       176 t~v~sL~--~~----s~VtSlEvs~dG~ilTia------------------~gssV~Fwdaksf~--~lKs~k~P~nV~S  229 (334)
T KOG0278|consen  176 TEVQSLE--FN----SPVTSLEVSQDGRILTIA------------------YGSSVKFWDAKSFG--LLKSYKMPCNVES  229 (334)
T ss_pred             cEEEEEe--cC----CCCcceeeccCCCEEEEe------------------cCceeEEecccccc--ceeeccCcccccc
Confidence              22221  11    236788899999876542                  13357777876422  2211 11 12345


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      -.+.|+. .+||+.-....+++||....  .....+..+.+|---.+.+.++|.+|..-.
T Consensus       230 ASL~P~k-~~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE~yAsGS  286 (334)
T KOG0278|consen  230 ASLHPKK-EFFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGELYASGS  286 (334)
T ss_pred             ccccCCC-ceEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCceeeccC
Confidence            5678887 68899988899999998632  123334344454345677888888776443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.72  E-value=0.3  Score=50.86  Aligned_cols=109  Identities=14%  Similarity=0.163  Sum_probs=66.4

Q ss_pred             eeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhhe
Q 016199          130 PLGIAFANSDPDADRITMIVADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~  205 (393)
                      .+.|....++      .|+-+..+.-+-.+++..   +..+..      ..++..|++.| |.+.+++-           
T Consensus       372 ILDlSWSKn~------fLLSSSMDKTVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSG-----------  428 (712)
T KOG0283|consen  372 ILDLSWSKNN------FLLSSSMDKTVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISG-----------  428 (712)
T ss_pred             heecccccCC------eeEeccccccEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeec-----------
Confidence            3556666666      555554455444444432   333321      24678899999 44655552           


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN  268 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~  268 (393)
                            .-.+.+..++....++....+--.....+++.|||+..+ .++.+|.+..|+..+.+
T Consensus       429 ------SLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  429 ------SLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             ------ccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEE-EEEeccEEEEEEccCCe
Confidence                  334556666655555544443335578899999997664 46678888888877654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.71  E-value=0.24  Score=49.38  Aligned_cols=148  Identities=19%  Similarity=0.170  Sum_probs=85.5

Q ss_pred             EEecCCCEE-EEEecC---CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc---eEEEeC
Q 016199           89 LYDAHSKLI-YTGCED---GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG---LLKISG  161 (393)
Q Consensus        89 a~d~~g~~L-~~~~~~---g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g---l~~id~  161 (393)
                      ++.++++.+ |..-..   .+++.++.+++.    ........+.-....+.+||     ++|.++....|   |+.+|.
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~----~~~i~~~~g~~~~P~fspDG-----~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGK----RPVILNFNGNNGAPAFSPDG-----SKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCc----cceeeccCCccCCccCCCCC-----CEEEEEECCCCCccEEEEcC
Confidence            455565532 332222   247777777665    33333323334456677888     35655544333   888888


Q ss_pred             Cc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199          162 NS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN  238 (393)
Q Consensus       162 ~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n  238 (393)
                      ++  .+.+. ...+...    .=.+.||| .|+|+...               .+.-.||+++++++..+.+........
T Consensus       270 ~~~~~~~Lt-~~~gi~~----~Ps~spdG~~ivf~Sdr---------------~G~p~I~~~~~~g~~~~riT~~~~~~~  329 (425)
T COG0823         270 DGKNLPRLT-NGFGINT----SPSWSPDGSKIVFTSDR---------------GGRPQIYLYDLEGSQVTRLTFSGGGNS  329 (425)
T ss_pred             CCCcceecc-cCCcccc----CccCCCCCCEEEEEeCC---------------CCCcceEEECCCCCceeEeeccCCCCc
Confidence            77  33332 2222110    12467888 57776322               122369999999888877766554444


Q ss_pred             cEEEcCCCCEEEEEeCCCCe--EEEEEec
Q 016199          239 GVVLSPDQTHLVYCETSMRR--CRKFYIK  265 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~r--i~~~~~~  265 (393)
                      .-.++|||+.+.+.....+.  |..+++.
T Consensus       330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         330 NPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             CccCCCCCCEEEEEeccCCceeeEEeccC
Confidence            56689999988888754454  5666653

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.67  E-value=0.0066  Score=39.10  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=33.7

Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      +..++..|+|+++++.++.+||++.....|.+++++|.
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            34567889999999999999999999999999998764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.35  Score=51.06  Aligned_cols=132  Identities=17%  Similarity=0.288  Sum_probs=83.5

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      |.+..-.++.|+|..+++...+.|+.|..||.+..+   .++.+....+|-=-++..|+.      +||.|.++.|+..+
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---~v~tfrrendRFW~laahP~l------NLfAAgHDsGm~VF  318 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---SVQTFRRENDRFWILAAHPEL------NLFAAGHDSGMIVF  318 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEeccccc---ceeeeeccCCeEEEEEecCCc------ceeeeecCCceEEE
Confidence            555667788999988766666678889999987654   256665445666678888888      89999888886655


Q ss_pred             eCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--C----
Q 016199          160 SGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--D----  233 (393)
Q Consensus       160 d~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~----  233 (393)
                      -.+.         ..|     ..++..++.+|+-+                    ..|..||..+.+-..+..  .    
T Consensus       319 kleR---------Erp-----a~~v~~n~LfYvkd--------------------~~i~~~d~~t~~d~~v~~lr~~g~~  364 (1202)
T KOG0292|consen  319 KLER---------ERP-----AYAVNGNGLFYVKD--------------------RFIRSYDLRTQKDTAVASLRRPGTL  364 (1202)
T ss_pred             EEcc---------cCc-----eEEEcCCEEEEEcc--------------------ceEEeeeccccccceeEeccCCCcc
Confidence            3321         011     23444444555543                    357778876643333221  1    


Q ss_pred             ccCCCcEEEcCCCCEEEEEeC
Q 016199          234 LYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~  254 (393)
                      ...+..+.+.|-...+++|..
T Consensus       365 ~~~~~smsYNpae~~vlics~  385 (1202)
T KOG0292|consen  365 WQPPRSLSYNPAENAVLICSN  385 (1202)
T ss_pred             cCCcceeeeccccCeEEEEec
Confidence            133566888888777777743

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.54  E-value=0.25  Score=48.23  Aligned_cols=148  Identities=12%  Similarity=0.088  Sum_probs=85.5

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeee-eecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeC---
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHN-WINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISG---  161 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~-~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~---  161 (393)
                      +++-+++|..|+.|+..|.||.|...++.    .-. +....-....|.|..||      ..+|....+| |..+..   
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG~----LL~v~~aHYQ~ITcL~fs~dg------s~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSGI----LLNVLSAHYQSITCLKFSDDG------SHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEecccc----HHHHHHhhccceeEEEEeCCC------cEEEecCCCccEEEEEEEee
Confidence            36778888877777789999999998875    222 21222346789999999      7777766555 443321   


Q ss_pred             ---Cc---eEEEeeccCCccccccccEEEcCCC---cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          162 ---NS---TVLLTDEAEGQKFKLTDGVDVADDG---MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       162 ---~g---~~~l~~~~~g~~~~~~~~l~~d~dG---~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                         +.   ...+. ...+.. ..+.++.++..|   ++|-+  |                ....+-.||...+.+-.-..
T Consensus       156 v~a~~~~~~~p~~-~f~~Ht-lsITDl~ig~Gg~~~rl~Ta--S----------------~D~t~k~wdlS~g~LLlti~  215 (476)
T KOG0646|consen  156 VSADNDHSVKPLH-IFSDHT-LSITDLQIGSGGTNARLYTA--S----------------EDRTIKLWDLSLGVLLLTIT  215 (476)
T ss_pred             cccccCCCcccee-eeccCc-ceeEEEEecCCCccceEEEe--c----------------CCceEEEEEeccceeeEEEe
Confidence               11   11110 111111 224566666544   33332  1                22345566766664322111


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      --..++.++++|-++.+|+. +..+.|+...+.
T Consensus       216 fp~si~av~lDpae~~~yiG-t~~G~I~~~~~~  247 (476)
T KOG0646|consen  216 FPSSIKAVALDPAERVVYIG-TEEGKIFQNLLF  247 (476)
T ss_pred             cCCcceeEEEcccccEEEec-CCcceEEeeehh
Confidence            12346889999999777664 457888887765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.51  E-value=0.25  Score=48.30  Aligned_cols=161  Identities=14%  Similarity=0.117  Sum_probs=92.2

Q ss_pred             ccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCC------CcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP------ADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK  154 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~------~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~  154 (393)
                      .++.-.++.|..||.++++|+.||.|..|..-+-.      ...-...|....-....+..+.-|   .+-+||-+..++
T Consensus       122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg---~~~rl~TaS~D~  198 (476)
T KOG0646|consen  122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG---TNARLYTASEDR  198 (476)
T ss_pred             hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC---ccceEEEecCCc
Confidence            34667889999999999999999998887653211      001122232222233444444322   111677775555


Q ss_pred             ceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeC-----------
Q 016199          155 GLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP-----------  222 (393)
Q Consensus       155 gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~-----------  222 (393)
                      -+-.+|...-..+..-.-.   ..++.+++||.+ .+|++..                  .|.++..+.           
T Consensus       199 t~k~wdlS~g~LLlti~fp---~si~av~lDpae~~~yiGt~------------------~G~I~~~~~~~~~~~~~~v~  257 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITFP---SSIKAVALDPAERVVYIGTE------------------EGKIFQNLLFKLSGQSAGVN  257 (476)
T ss_pred             eEEEEEeccceeeEEEecC---CcceeEEEcccccEEEecCC------------------cceEEeeehhcCCccccccc
Confidence            5666666541122211111   235789999977 6888743                  233333322           


Q ss_pred             ------CCCeEEEEecCcc--CCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          223 ------VTKETKVLVSDLY--FANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       223 ------~t~~~~~~~~~l~--~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                            ..-+...+..+-.  ....++++-|| .++++....+.++.|++..
T Consensus       258 ~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  258 QKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             ccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecch
Confidence                  1112222222222  45678999999 6788888899999999853

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.49  E-value=1.3  Score=45.65  Aligned_cols=233  Identities=15%  Similarity=0.177  Sum_probs=123.5

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC----------
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY----------  153 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~----------  153 (393)
                      --.++++.|||..|.++. +.+++.||++++.   ............+.++...||      +.+...+.          
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~---llqtLKgHKDtVycVAys~dG------krFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDG------KRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcc---cccccccccceEEEEEEccCC------ceeccCCCceeEEEeccc
Confidence            345689999998776554 5579999998764   133333333457788888888      55544322          


Q ss_pred             -CceEEEeCCc-eEEEeecc------------------CC------ccccccccEEEcCCCcEEEEeCCCccchhhheeh
Q 016199          154 -KGLLKISGNS-TVLLTDEA------------------EG------QKFKLTDGVDVADDGMIYFTDASNKYYLREYILD  207 (393)
Q Consensus       154 -~gl~~id~~g-~~~l~~~~------------------~g------~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~  207 (393)
                       .|+++++... .+-...+.                  +.      .....+++-....||.+++-              
T Consensus        84 lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylal--------------  149 (1081)
T KOG1538|consen   84 LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL--------------  149 (1081)
T ss_pred             ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEE--------------
Confidence             2344443221 11111000                  00      00112334445556643332              


Q ss_pred             hcccCCCcEEEEEeCCCCeEEE-Eec---CccCCCcEEEcCCC-----CEEEEEeCCCCeEEEEEecCCCCcceeeeecc
Q 016199          208 IFEGKPNGRLLSFDPVTKETKV-LVS---DLYFANGVVLSPDQ-----THLVYCETSMRRCRKFYIKGKNAGRVEKFIET  278 (393)
Q Consensus       208 ~~e~~~~g~l~~~d~~t~~~~~-~~~---~l~~~ngi~~s~dg-----~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~  278 (393)
                         +..+|.+-..+. +++-+. +.+   .....-+|+++|..     +.+-|.+ ++.++.-|.++|.-.++.+    +
T Consensus       150 ---G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~LsG~~Igk~r----~  220 (1081)
T KOG1538|consen  150 ---GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQLSGKQIGKDR----A  220 (1081)
T ss_pred             ---eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEEecceeecccc----c
Confidence               134455544443 333222 222   23344678887652     3555665 5678999998876433222    2


Q ss_pred             CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCc
Q 016199          279 LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSL  358 (393)
Q Consensus       279 l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~  358 (393)
                      +.--|-.|..-.+|.+..-....                                  +++-.|..+|-.+-.+.+-+.+.
T Consensus       221 L~FdP~CisYf~NGEy~LiGGsd----------------------------------k~L~~fTR~GvrLGTvg~~D~WI  266 (1081)
T KOG1538|consen  221 LNFDPCCISYFTNGEYILLGGSD----------------------------------KQLSLFTRDGVRLGTVGEQDSWI  266 (1081)
T ss_pred             CCCCchhheeccCCcEEEEccCC----------------------------------CceEEEeecCeEEeeccccceeE
Confidence            22236777777788855432211                                  45777788887777766544333


Q ss_pred             cEEEEEeCCE-EEEEecCCCeEEEEeC
Q 016199          359 ISSAIKIGDH-LYCGSVHHRGILHLDV  384 (393)
Q Consensus       359 ~~~~~~~~g~-Lyigs~~~~~i~~~~~  384 (393)
                      -+.....++. .-+|. ....|+.+++
T Consensus       267 WtV~~~PNsQ~v~~GC-qDGTiACyNl  292 (1081)
T KOG1538|consen  267 WTVQAKPNSQYVVVGC-QDGTIACYNL  292 (1081)
T ss_pred             EEEEEccCCceEEEEE-ccCeeehhhh
Confidence            3333444444 44554 5667777765

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.49  E-value=0.005  Score=36.18  Aligned_cols=18  Identities=44%  Similarity=0.757  Sum_probs=16.5

Q ss_pred             cccccEEEcCCCcEEEEe
Q 016199          177 KLTDGVDVADDGMIYFTD  194 (393)
Q Consensus       177 ~~~~~l~~d~dG~l~~td  194 (393)
                      ..|++|+++++|+||++|
T Consensus         2 ~~P~gvav~~~g~i~VaD   19 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVAD   19 (28)
T ss_dssp             SSEEEEEEETTSEEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEE
Confidence            468899999999999998

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.46  E-value=0.16  Score=46.94  Aligned_cols=186  Identities=15%  Similarity=0.194  Sum_probs=89.8

Q ss_pred             EecCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE-------
Q 016199           90 YDAHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL-------  157 (393)
Q Consensus        90 ~d~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~-------  157 (393)
                      |++||..||..-.|     |-|-.|+...+-  ..+-.|...+-.|+.+.+-+||      ++.+.. .+||-       
T Consensus       121 fs~dG~~LYATEndfd~~rGViGvYd~r~~f--qrvgE~~t~GiGpHev~lm~DG------rtlvva-nGGIethpdfgR  191 (366)
T COG3490         121 FSPDGRLLYATENDFDPNRGVIGVYDAREGF--QRVGEFSTHGIGPHEVTLMADG------RTLVVA-NGGIETHPDFGR  191 (366)
T ss_pred             cCCCCcEEEeecCCCCCCCceEEEEeccccc--ceecccccCCcCcceeEEecCC------cEEEEe-CCceecccccCc
Confidence            67788777754321     212233322110  0133344446679999999999      666553 33322       


Q ss_pred             -EEeCCce---EEEeeccCC-----------ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          158 -KISGNST---VLLTDEAEG-----------QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       158 -~id~~g~---~~l~~~~~g-----------~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                       .++.+.+   -++.+...|           .....+..+++++||++|++.-..        -.-.+..   -|.-.-.
T Consensus       192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~--------G~~~d~p---pLvg~~~  260 (366)
T COG3490         192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR--------GPRNDLP---PLVGHFR  260 (366)
T ss_pred             cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee--------CCCccCC---cceeecc
Confidence             2222220   011111111           112345678999999999996321        1111111   1222222


Q ss_pred             CCCeEEEEecC-------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE
Q 016199          223 VTKETKVLVSD-------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL  295 (393)
Q Consensus       223 ~t~~~~~~~~~-------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw  295 (393)
                      +++.++.+.-.       -.+.-.|++..+.+.+-++.-..++...+|.+   ++...... .++. ..|++.+..| +-
T Consensus       261 ~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~---tG~vv~~a-~l~d-aaGva~~~~g-f~  334 (366)
T COG3490         261 KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA---TGAVVSEA-ALPD-AAGVAAAKGG-FA  334 (366)
T ss_pred             CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC---CCcEEecc-cccc-cccceeccCc-eE
Confidence            33444332110       23455677776666777777777788888863   34332221 2221 2355555433 55


Q ss_pred             EEEecC
Q 016199          296 IALATE  301 (393)
Q Consensus       296 va~~~~  301 (393)
                      |++..+
T Consensus       335 vssg~G  340 (366)
T COG3490         335 VSSGQG  340 (366)
T ss_pred             EecCCc
Confidence            555544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.43  E-value=0.91  Score=43.28  Aligned_cols=147  Identities=12%  Similarity=0.111  Sum_probs=85.3

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc--
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS--  163 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g--  163 (393)
                      +++.+|+.+.+-+|..|..-+.|+..++.  . .............+.|..+|      .+++...-.| |..+..+.  
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge--~-~~eltgHKDSVt~~~Fshdg------tlLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGE--F-AGELTGHKDSVTCCSFSHDG------TLLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCc--c-eeEecCCCCceEEEEEccCc------eEEEecCCCccEEEEEcccCc
Confidence            46778876655566667777777776554  1 22222234567888999999      6655533334 44444332  


Q ss_pred             -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecCccCCCcEE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDLYFANGVV  241 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~l~~~ngi~  241 (393)
                       ...+....++     +.-+...|.+.++++-                 ...|.+|.|....+ ..+.+.......+.=.
T Consensus       140 ~~~~~~~e~~d-----ieWl~WHp~a~illAG-----------------~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~  197 (399)
T KOG0296|consen  140 EQWKLDQEVED-----IEWLKWHPRAHILLAG-----------------STDGSVWMWQIPSQALCKVMSGHNSPCTCGE  197 (399)
T ss_pred             eEEEeecccCc-----eEEEEecccccEEEee-----------------cCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence             2222111111     2234567777666652                 45678999987664 3333333333344456


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEec
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      |.|||+.+.... .++.|..|+++
T Consensus       198 f~pdGKr~~tgy-~dgti~~Wn~k  220 (399)
T KOG0296|consen  198 FIPDGKRILTGY-DDGTIIVWNPK  220 (399)
T ss_pred             ccCCCceEEEEe-cCceEEEEecC
Confidence            889998765544 57899999974

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=0.88  Score=48.22  Aligned_cols=153  Identities=13%  Similarity=0.188  Sum_probs=94.7

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-ceEEEeCCce
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-GLLKISGNST  164 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~id~~g~  164 (393)
                      -+++|.|..-.+.++.++|.|..||-.-+.   .+..|....|...|++|++.+      -|+|...+. .|-.++-+..
T Consensus        13 KglsFHP~rPwILtslHsG~IQlWDYRM~t---li~rFdeHdGpVRgv~FH~~q------plFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen   13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGT---LIDRFDEHDGPVRGVDFHPTQ------PLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             cceecCCCCCEEEEeecCceeeeehhhhhh---HHhhhhccCCccceeeecCCC------CeEEecCCccEEEEEecccc
Confidence            347889886667788889988888765433   255666666778999999999      799985433 2434443321


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-ccCCCcEEEc
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LYFANGVVLS  243 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~~~ngi~~s  243 (393)
                      +.+ ...-|. +.++..+.+... .=|+-.+|.                ...|..++-.+++....+++ .++.=.-.|.
T Consensus        84 rcl-ftL~GH-lDYVRt~~FHhe-yPWIlSASD----------------DQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   84 RCL-FTLLGH-LDYVRTVFFHHE-YPWILSASD----------------DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             eeh-hhhccc-cceeEEeeccCC-CceEEEccC----------------CCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            111 111111 122334444443 345554432                23566666666665554444 4555566677


Q ss_pred             CCCCEEEEEeCCCCeEEEEEecCC
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      |-+ .++|+.+...+|..||+.|-
T Consensus       145 ptE-DlIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  145 PTE-DLIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             Ccc-ceEEEecccceEEEEeecch
Confidence            766 47899999999999999874

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.38  E-value=0.2  Score=48.16  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=62.1

Q ss_pred             ccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ecC-------------ccCCCcEEE
Q 016199          178 LTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VSD-------------LYFANGVVL  242 (393)
Q Consensus       178 ~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~~-------------l~~~ngi~~  242 (393)
                      -+.+|++.++|.+|+++.....           ....-+|++|++++...+.+  ...             ....-++++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~-----------~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~  154 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRT-----------GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAV  154 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccC-----------CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEE
Confidence            4568999889999999733200           00125799999873332332  111             112347999


Q ss_pred             cCCCCEEEEEeCCC---------------CeEEEEEecCCC--CcceeeeeccC-----CCCCCeEEECCCCCEEEEEe
Q 016199          243 SPDQTHLVYCETSM---------------RRCRKFYIKGKN--AGRVEKFIETL-----PGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       243 s~dg~~l~v~~~~~---------------~ri~~~~~~g~~--~~~~~~~~~~l-----~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++||+.||++....               -||++|+.....  ..++..-.+..     ..-+..+..-++|+++|-.-
T Consensus       155 ~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  155 SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence            99999777665332               478888875321  22222112210     11233466667888887544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=96.35  E-value=0.14  Score=50.52  Aligned_cols=179  Identities=9%  Similarity=0.099  Sum_probs=95.0

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce--eeeEECCCCCCCCceEEEEEeC-CCceEEEeCCce
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP--LGIAFANSDPDADRITMIVADA-YKGLLKISGNST  164 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p--~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g~  164 (393)
                      +-..+||+.|.+|.....+-.||+...+- . ++.- .+...|  ..++..+|-      ++.++-. .+.|..+|... 
T Consensus       471 ckL~pdgrtLivGGeastlsiWDLAapTp-r-ikae-ltssapaCyALa~spDa------kvcFsccsdGnI~vwDLhn-  540 (705)
T KOG0639|consen  471 CKLLPDGRTLIVGGEASTLSIWDLAAPTP-R-IKAE-LTSSAPACYALAISPDA------KVCFSCCSDGNIAVWDLHN-  540 (705)
T ss_pred             eEecCCCceEEeccccceeeeeeccCCCc-c-hhhh-cCCcchhhhhhhcCCcc------ceeeeeccCCcEEEEEccc-
Confidence            33456777777766655566666654320 0 1100 112223  567777877      6655433 45577778754 


Q ss_pred             EEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc-cCCCcEEE
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL-YFANGVVL  242 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l-~~~ngi~~  242 (393)
                      +.++..++|.. ..+..|++.+|| +||-+                  .....|.++|..+++.- ...++ ...-.+..
T Consensus       541 q~~VrqfqGht-DGascIdis~dGtklWTG------------------GlDntvRcWDlregrql-qqhdF~SQIfSLg~  600 (705)
T KOG0639|consen  541 QTLVRQFQGHT-DGASCIDISKDGTKLWTG------------------GLDNTVRCWDLREGRQL-QQHDFSSQIFSLGY  600 (705)
T ss_pred             ceeeecccCCC-CCceeEEecCCCceeecC------------------CCccceeehhhhhhhhh-hhhhhhhhheeccc
Confidence            12222334432 224468899999 78876                  34557888998655321 11111 11223345


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +|.++++.|.-. ++.+......++.  ++....  ....--.+.+..-|++||++.-.
T Consensus       601 cP~~dWlavGMe-ns~vevlh~skp~--kyqlhl--heScVLSlKFa~cGkwfvStGkD  654 (705)
T KOG0639|consen  601 CPTGDWLAVGME-NSNVEVLHTSKPE--KYQLHL--HESCVLSLKFAYCGKWFVSTGKD  654 (705)
T ss_pred             CCCccceeeecc-cCcEEEEecCCcc--ceeecc--cccEEEEEEecccCceeeecCch
Confidence            688888776543 5566666654432  111111  01112235678889999987643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.32  E-value=0.11  Score=49.16  Aligned_cols=180  Identities=19%  Similarity=0.226  Sum_probs=91.8

Q ss_pred             CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-e-EEEeec
Q 016199           93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-T-VLLTDE  170 (393)
Q Consensus        93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~-~~l~~~  170 (393)
                      +.+.+..|+.|..|..|+.+++.   -+..+.+.+...+++.|. +|      .+.-+.-+..+...+... . ..+...
T Consensus       246 d~rviisGSSDsTvrvWDv~tge---~l~tlihHceaVLhlrf~-ng------~mvtcSkDrsiaVWdm~sps~it~rrV  315 (499)
T KOG0281|consen  246 DERVIVSGSSDSTVRVWDVNTGE---PLNTLIHHCEAVLHLRFS-NG------YMVTCSKDRSIAVWDMASPTDITLRRV  315 (499)
T ss_pred             cceEEEecCCCceEEEEeccCCc---hhhHHhhhcceeEEEEEe-CC------EEEEecCCceeEEEeccCchHHHHHHH
Confidence            33344445555556666655443   123333445667788885 56      455554455555555443 0 001011


Q ss_pred             cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEE
Q 016199          171 AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLV  250 (393)
Q Consensus       171 ~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~  250 (393)
                      .-|. ...+|-+.+|..   |+..++.                .-.+-.++..|.+......  .+-.|||...=...++
T Consensus       316 LvGH-rAaVNvVdfd~k---yIVsASg----------------DRTikvW~~st~efvRtl~--gHkRGIAClQYr~rlv  373 (499)
T KOG0281|consen  316 LVGH-RAAVNVVDFDDK---YIVSASG----------------DRTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLV  373 (499)
T ss_pred             Hhhh-hhheeeeccccc---eEEEecC----------------CceEEEEeccceeeehhhh--cccccceehhccCeEE
Confidence            1122 134555555543   4443332                2356677777766543322  2446777655444788


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhh
Q 016199          251 YCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDL  308 (393)
Q Consensus       251 v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~  308 (393)
                      |+++..+.|..|++.-.   ......++...+-..|++|. -++--+...+....||+
T Consensus       374 VSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd~-krIVSGaYDGkikvWdl  427 (499)
T KOG0281|consen  374 VSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL  427 (499)
T ss_pred             EecCCCceEEEEecccc---HHHHHHhchHHhhhheeecC-ceeeeccccceEEEEec
Confidence            99999999999998532   21112222222445667763 33444444444444444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.31  E-value=0.13  Score=54.64  Aligned_cols=162  Identities=13%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CccCCCceEEEecCCC-EEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCc-eeeeEECCCCCCCCceEEEEEeCCCce
Q 016199           80 GVLKGPEDLLYDAHSK-LIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGR-PLGIAFANSDPDADRITMIVADAYKGL  156 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~-~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~-p~gl~~d~~G~~~~~~~L~v~~~~~gl  156 (393)
                      |....|..+......+ +|+..- ....|+++|++.+.   .++.|...... ...++-+.++.....+.-++|-...+|
T Consensus       478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GK---VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~l  554 (794)
T PF08553_consen  478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGK---VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSL  554 (794)
T ss_pred             CcccCcchhhhhccccceEeecCCCCCceEEEecCCCc---EEEEeecCCCcceeEecccccccccCCCceEEEECCCce
Confidence            3445577755554444 344332 35689999998765   36666543222 233333322110112367888888999


Q ss_pred             EEEeCC--ceEEEeec-cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          157 LKISGN--STVLLTDE-AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       157 ~~id~~--g~~~l~~~-~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      +++|+.  |.+++... .+-.....-..++.+.+|.|-+++                  ..|.|.-||.-+.+..+...+
T Consensus       555 friDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs------------------~~G~IRLyd~~g~~AKT~lp~  616 (794)
T PF08553_consen  555 FRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGS------------------NKGDIRLYDRLGKRAKTALPG  616 (794)
T ss_pred             EEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEe------------------CCCcEEeecccchhhhhcCCC
Confidence            999974  31111111 110111123467888899999984                  567788888765566666666


Q ss_pred             ccCC-CcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          234 LYFA-NGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       234 l~~~-ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      +.-| .||.++.||++++.+  ...-|..++.
T Consensus       617 lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t  646 (794)
T PF08553_consen  617 LGDPIIGIDVTADGKWILAT--CKTYLLLIDT  646 (794)
T ss_pred             CCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence            6554 799999999876554  3455666654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=96.30  E-value=0.94  Score=42.16  Aligned_cols=165  Identities=13%  Similarity=0.184  Sum_probs=90.6

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      +.|+|+|..+-.|..|..|+.|+..+.     .+.+.   ...+...++.+.+++     ..++-+..+..+..+|... 
T Consensus        53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gd-----ceN~~~lkgHsgAVM~l~~~~d~-----s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   53 IKFHPDGSCFASGGSDRAIVLWNVYGD-----CENFWVLKGHSGAVMELHGMRDG-----SHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             EEECCCCCeEeecCCcceEEEEecccc-----ccceeeeccccceeEeeeeccCC-----CEEEEecCCceEEEEecccc
Confidence            679999986666677889999987654     22222   123456788888888     2466666677788888653 


Q ss_pred             eEEEeeccCCccccccccEEEc-----------CCCcEEEEeCCCccchhhh--------------eehhcccCCCcEEE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVA-----------DDGMIYFTDASNKYYLREY--------------ILDIFEGKPNGRLL  218 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d-----------~dG~l~~td~~~~~~~~~~--------------~~~~~e~~~~g~l~  218 (393)
                      .....  ..+. ..++|.+...           .||++=+=|..++-..+-+              .-++..+.=.+.|-
T Consensus       123 ~~~rk--~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik  199 (338)
T KOG0265|consen  123 KRIRK--HKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK  199 (338)
T ss_pred             eeeeh--hccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence            11110  0000 1223333222           2444444443322111111              00111111123355


Q ss_pred             EEeCCCCeEEEEecC-ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          219 SFDPVTKETKVLVSD-LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       219 ~~d~~t~~~~~~~~~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .+|+..+.......+ -....++.++++|.++ .++...+.+.++++..
T Consensus       200 vWd~r~~d~~~~lsGh~DtIt~lsls~~gs~l-lsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  200 VWDLRKNDGLYTLSGHADTITGLSLSRYGSFL-LSNSMDNTVRVWDVRP  247 (338)
T ss_pred             eeccccCcceEEeecccCceeeEEeccCCCcc-ccccccceEEEEEecc
Confidence            677755554444444 3456889999999755 6778888999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.29  E-value=0.29  Score=50.46  Aligned_cols=153  Identities=10%  Similarity=0.144  Sum_probs=89.1

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCC
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGN  162 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~  162 (393)
                      -.++++++|+++|++..+..-+..|....+.   .+..+... .+....|++++.|      .|..... .+.+-.+|-.
T Consensus        65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk---~irswKa~He~Pvi~ma~~~~g------~LlAtggaD~~v~VWdi~  135 (775)
T KOG0319|consen   65 ITALALTPDEEVLVTASRSQLLRVWSLPTGK---LIRSWKAIHEAPVITMAFDPTG------TLLATGGADGRVKVWDIK  135 (775)
T ss_pred             hheeeecCCccEEEEeeccceEEEEEcccch---HhHhHhhccCCCeEEEEEcCCC------ceEEeccccceEEEEEee
Confidence            3457899999999988888767777777653   23333332 2334789999988      6655433 3335555654


Q ss_pred             c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCccCCCc
Q 016199          163 S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLYFANG  239 (393)
Q Consensus       163 g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~~~ng  239 (393)
                      + .-.  ..+.|.+ .-+..+.+.++-+.|+-               ..+...+.+..||..++..  ..+........+
T Consensus       136 ~~~~t--h~fkG~g-GvVssl~F~~~~~~~lL---------------~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts  197 (775)
T KOG0319|consen  136 NGYCT--HSFKGHG-GVVSSLLFHPHWNRWLL---------------ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS  197 (775)
T ss_pred             CCEEE--EEecCCC-ceEEEEEeCCccchhhe---------------eecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence            4 111  1222322 12446667765433221               1124567788888765544  112233556789


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +++++|+..++-..+ ..-+..|++.
T Consensus       198 L~~~~d~~~~ls~~R-Dkvi~vwd~~  222 (775)
T KOG0319|consen  198 LAFSEDSLELLSVGR-DKVIIVWDLV  222 (775)
T ss_pred             eeeccCCceEEEecc-CcEEEEeehh
Confidence            999999876654433 4556777774

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.25  E-value=0.21  Score=47.67  Aligned_cols=147  Identities=17%  Similarity=0.166  Sum_probs=82.5

Q ss_pred             CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCe---------
Q 016199          188 GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRR---------  258 (393)
Q Consensus       188 G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r---------  258 (393)
                      .++|+-|....             ...++++.+|.+++++.=..+.-..++ +.+++|++.+|++++.-.|         
T Consensus         3 ~rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv   68 (342)
T PF06433_consen    3 HRVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV   68 (342)
T ss_dssp             TEEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence            46888875431             124699999999888654444334444 7799999999999876333         


Q ss_pred             EEEEEecCCCCcceeeeeccC-----CCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCC
Q 016199          259 CRKFYIKGKNAGRVEKFIETL-----PGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMG  332 (393)
Q Consensus       259 i~~~~~~g~~~~~~~~~~~~l-----~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  332 (393)
                      |..||.+.-. -..|+.+...     -..+..+++..||+ ++|....+                               
T Consensus        69 v~~~D~~TL~-~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-------------------------------  116 (342)
T PF06433_consen   69 VEIWDTQTLS-PTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP-------------------------------  116 (342)
T ss_dssp             EEEEETTTTE-EEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS-------------------------------
T ss_pred             EEEEecCcCc-ccceEecCCcchheecccccceEEccCCcEEEEEccCC-------------------------------
Confidence            4456653211 1122222111     01456788888998 55555433                               


Q ss_pred             CCCceEEEECCC-CcEEEEeeCCCCCccEEEEEeC-CEEEEEecCCCeEEEEeCCC
Q 016199          333 KSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIKIG-DHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       333 ~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~~~-g~Lyigs~~~~~i~~~~~~~  386 (393)
                        ...|-.+|.+ ++++..+..|   .|..+.+.+ +.++.- .....+..+.+++
T Consensus       117 --a~SVtVVDl~~~kvv~ei~~P---GC~~iyP~~~~~F~~l-C~DGsl~~v~Ld~  166 (342)
T PF06433_consen  117 --ATSVTVVDLAAKKVVGEIDTP---GCWLIYPSGNRGFSML-CGDGSLLTVTLDA  166 (342)
T ss_dssp             --SEEEEEEETTTTEEEEEEEGT---SEEEEEEEETTEEEEE-ETTSCEEEEEETS
T ss_pred             --CCeEEEEECCCCceeeeecCC---CEEEEEecCCCceEEE-ecCCceEEEEECC
Confidence              2458888875 5566666644   444555544 443333 2555666666553

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.18  E-value=2  Score=44.80  Aligned_cols=158  Identities=11%  Similarity=0.090  Sum_probs=87.0

Q ss_pred             cEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199          181 GVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC  259 (393)
Q Consensus       181 ~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri  259 (393)
                      .-.+++|| .||+.......      .-+......+.++..+.++++...  .--..+..+.+++||..+.+.-  .++|
T Consensus       401 ~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v  470 (591)
T PRK13616        401 RPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKV  470 (591)
T ss_pred             CceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEE
Confidence            34688985 78887422110      001111234567766666555433  1112477899999999887765  3577


Q ss_pred             EEEEecCCCCcceee-----eeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCC
Q 016199          260 RKFYIKGKNAGRVEK-----FIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKS  334 (393)
Q Consensus       260 ~~~~~~g~~~~~~~~-----~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  334 (393)
                      +.--+.....|..+.     +...+...+..+..-.++.+.++.....                                
T Consensus       471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~--------------------------------  518 (591)
T PRK13616        471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE--------------------------------  518 (591)
T ss_pred             EEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCC--------------------------------
Confidence            763332111222221     2222333345566777788777654321                                


Q ss_pred             CceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCCCeEEEEe
Q 016199          335 SSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHHRGILHLD  383 (393)
Q Consensus       335 ~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~~~i~~~~  383 (393)
                       ..+.+++.+|.....+.... ...+..+....+.+|++  .++.+.++.
T Consensus       519 -~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~--~~~g~~~l~  565 (591)
T PRK13616        519 -HPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVT--DARAVLQLP  565 (591)
T ss_pred             -CceEEEecCCccccccCCCCccCceEEEecCCceEEEE--cCCceEEec
Confidence             23788888887655433322 33344444455789998  677777776

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.06  E-value=0.76  Score=46.54  Aligned_cols=128  Identities=13%  Similarity=0.192  Sum_probs=76.4

Q ss_pred             CccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-------eEEEEec--------C---
Q 016199          173 GQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-------ETKVLVS--------D---  233 (393)
Q Consensus       173 g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-------~~~~~~~--------~---  233 (393)
                      ..++..+.+|++.+. |.+|++....+.. .+-.-.--+....|.|+||-+.++       ++..+..        .   
T Consensus       413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~  491 (616)
T COG3211         413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS  491 (616)
T ss_pred             CccccCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence            345566788999884 6899985532211 000000111234688999988765       4444321        1   


Q ss_pred             -------ccCCCcEEEcCCCCEEEEEeCCCC--------eEEEEEecCCCCcceeeeeccCCC-CCCeEEECCCCC-EEE
Q 016199          234 -------LYFANGVVLSPDQTHLVYCETSMR--------RCRKFYIKGKNAGRVEKFIETLPG-LPDNIRYDGEGH-YLI  296 (393)
Q Consensus       234 -------l~~~ngi~~s~dg~~l~v~~~~~~--------ri~~~~~~g~~~~~~~~~~~~l~g-~P~~i~~d~~G~-lwv  296 (393)
                             +..|.+++|++.|+ ||+++-..+        .+..+...+.+.++.+.|.....+ --.|.++.+||+ ++|
T Consensus       492 ~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV  570 (616)
T COG3211         492 ANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV  570 (616)
T ss_pred             cCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence                   33489999999995 777764432        333333445567777777643221 135688999987 888


Q ss_pred             EEecCc
Q 016199          297 ALATEF  302 (393)
Q Consensus       297 a~~~~r  302 (393)
                      +...+.
T Consensus       571 ~vQHPG  576 (616)
T COG3211         571 NVQHPG  576 (616)
T ss_pred             EecCCC
Confidence            887664

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.22  Score=47.95  Aligned_cols=184  Identities=13%  Similarity=0.131  Sum_probs=98.4

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEE-cCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-c
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVT-LNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN-S  163 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~-~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g  163 (393)
                      -.+++..+|..|=++..||.+..|+ |.-..    ........+....|.|.+||      ++++.-.......++.+ |
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dg------k~lasig~d~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDG------KFLASIGADSARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCC------cEEEEecCCceEEEEeccC
Confidence            4588888888777888899888887 55433    22222334668899999999      77766555555566653 3


Q ss_pred             --eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC--C----eEEEEecCc
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT--K----ETKVLVSDL  234 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t--~----~~~~~~~~l  234 (393)
                        .....+.-....+..+.- -.|+++ .+++....               .+.+++..++...  +    +.+......
T Consensus       218 ~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~---------------~~~~~v~~~~~~~w~~~~~l~~~~~~~~~  281 (398)
T KOG0771|consen  218 AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQ---------------FPGGGVRLCDISLWSGSNFLRLRKKIKRF  281 (398)
T ss_pred             chhhhcCCcccchhhhhcee-cccCCCceEEEEEec---------------CCCCceeEEEeeeeccccccchhhhhhcc
Confidence              222211111111222211 122222 66665422               2233444443321  1    112222234


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEE
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~  298 (393)
                      .....++++.||+++-+ .+..+.|..|+...  ......+.+-..++-.++.+.++-++-...
T Consensus       282 ~siSsl~VS~dGkf~Al-GT~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLAL-GTMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             CcceeEEEcCCCcEEEE-eccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence            45678899999987655 55688899988642  111111111122345567777776655543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.97  E-value=0.23  Score=50.55  Aligned_cols=186  Identities=14%  Similarity=0.236  Sum_probs=93.0

Q ss_pred             CCCEEEEEecCCeEEEEEcCCCCCcce---eeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-----e
Q 016199           93 HSKLIYTGCEDGWIKRVTLNDSPADSL---VHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-----T  164 (393)
Q Consensus        93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~---~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-----~  164 (393)
                      +++.||+|.+||.|..|+.....+...   ...+.....-.+.|+...+|     +.|+-|..+.-|-.++...     .
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-----~tlIS~SsDtTVK~W~~~~~~~~c~  110 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-----KTLISASSDTTVKVWNAHKDNTFCM  110 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-----CceEEecCCceEEEeecccCcchhH
Confidence            555699999999888887654321100   00011111223455555555     1344444444455554321     1


Q ss_pred             EEEeeccCCccccccccEEE-cCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-------Cc--
Q 016199          165 VLLTDEAEGQKFKLTDGVDV-ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-------DL--  234 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~-d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-------~l--  234 (393)
                      ..+.     ..-..+..++. .++..+.++ +                .-.++|+.||..++..+.+..       .+  
T Consensus       111 stir-----~H~DYVkcla~~ak~~~lvaS-g----------------GLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen  111 STIR-----THKDYVKCLAYIAKNNELVAS-G----------------GLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             hhhh-----cccchheeeeecccCceeEEe-c----------------CCCccEEEEEccCcchhhhhhccccccccCCC
Confidence            1111     11123456666 455555544 2                224568888877663322211       11  


Q ss_pred             ---cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEE---ECCCCCEEEEE-ecCcchhhh
Q 016199          235 ---YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIR---YDGEGHYLIAL-ATEFSTYWD  307 (393)
Q Consensus       235 ---~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~---~d~~G~lwva~-~~~r~~~~~  307 (393)
                         .....++..+.| +++++....+-|..|++...   .  ..+ .+-|+-+|+.   ++.||+-.++. ..+-..+||
T Consensus       169 G~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---~--kim-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd  241 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---K--KIM-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD  241 (735)
T ss_pred             CCccceeeeecCCcc-eEEEecCcccceEEeccccc---c--cee-eeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence               122345555555 78888877777777776432   1  122 2346667754   68888744443 333334555


Q ss_pred             hhhcC
Q 016199          308 LAYRY  312 (393)
Q Consensus       308 ~~~~~  312 (393)
                      +-+++
T Consensus       242 LgqQr  246 (735)
T KOG0308|consen  242 LGQQR  246 (735)
T ss_pred             ccccc
Confidence            54443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=95.92  E-value=1.1  Score=43.83  Aligned_cols=232  Identities=15%  Similarity=0.133  Sum_probs=117.6

Q ss_pred             eEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCC---CceeeeEECC-CCCCCCceEEEEEeCCCceEEEeC
Q 016199           87 DLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG---GRPLGIAFAN-SDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        87 ~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~---~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      +|.|.|.+ ..+|..+.||.|...|.++..    .+.+....   ..-.++.+.. ++      .+++++..+-+..+|.
T Consensus       239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i----~e~v~s~~~d~~~fs~~d~~~e~~------~vl~~~~~G~f~~iD~  308 (498)
T KOG4328|consen  239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNI----SEEVLSLDTDNIWFSSLDFSAESR------SVLFGDNVGNFNVIDL  308 (498)
T ss_pred             ceEecCCChhheeeeccCceeeeeeecchh----hHHHhhcCccceeeeeccccCCCc------cEEEeecccceEEEEe
Confidence            46666643 357778888888777777654    33332221   1123344433 34      6777776664555554


Q ss_pred             C--ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC--CeEEEEe---cCc
Q 016199          162 N--STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT--KETKVLV---SDL  234 (393)
Q Consensus       162 ~--g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t--~~~~~~~---~~l  234 (393)
                      .  +.+...-....   .-+++|++.|-..-+++.++.                .+.+-.||...  ++.+.++   ..-
T Consensus       309 R~~~s~~~~~~lh~---kKI~sv~~NP~~p~~laT~s~----------------D~T~kIWD~R~l~~K~sp~lst~~Hr  369 (498)
T KOG4328|consen  309 RTDGSEYENLRLHK---KKITSVALNPVCPWFLATASL----------------DQTAKIWDLRQLRGKASPFLSTLPHR  369 (498)
T ss_pred             ecCCccchhhhhhh---cccceeecCCCCchheeeccc----------------CcceeeeehhhhcCCCCcceeccccc
Confidence            2  21110000111   236688888866444554433                22344555421  2221122   223


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEec--CCCCcc-eeeeeccCCC---CCCeEEECCCCCEEEEEecCcchhhhh
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIK--GKNAGR-VEKFIETLPG---LPDNIRYDGEGHYLIALATEFSTYWDL  308 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~--g~~~~~-~~~~~~~l~g---~P~~i~~d~~G~lwva~~~~r~~~~~~  308 (393)
                      ...|...|+|++.. +++.+..++|..|+-+  +.+... .++...+..+   -|---+.|++-++.+.....       
T Consensus       370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-------  441 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP-------  441 (498)
T ss_pred             ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC-------
Confidence            34688899999877 6778889999999863  011000 0111000000   01112346665544433322       


Q ss_pred             hhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcE-EEEeeCCCCCccEEE---EEeCCEEEEEecCCCeEEEE
Q 016199          309 AYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKP-IAHYYDPEMSLISSA---IKIGDHLYCGSVHHRGILHL  382 (393)
Q Consensus       309 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~~~~~d~~~~~~~~~---~~~~g~Lyigs~~~~~i~~~  382 (393)
                                                 ..|-.||.+|+. +..+++|....++.+   .+.++.+.-|+.....|..+
T Consensus       442 ---------------------------r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  442 ---------------------------RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             ---------------------------cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence                                       237888988765 788899884333333   33444455555445555544

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.87  E-value=2.1  Score=42.26  Aligned_cols=150  Identities=13%  Similarity=0.115  Sum_probs=88.3

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~  161 (393)
                      +.-.+++|..+|..|-+|..+|.+..|+.++..    ...+....+....+....+|      +.+++.. ++-+..+|.
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----~~tl~~HkgPI~slKWnk~G------~yilS~~vD~ttilwd~  305 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----ISTLGQHKGPIFSLKWNKKG------TYILSGGVDGTTILWDA  305 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchh----hhhhhccCCceEEEEEcCCC------CEEEeccCCccEEEEec
Confidence            556779999999989999999999999988765    55555555667889999888      6555433 444666675


Q ss_pred             -Cc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199          162 -NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG  239 (393)
Q Consensus       162 -~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng  239 (393)
                       .| ..+.. .....+   .-+|..-.+.. +++. +.              .+.-.|++++.++- +..+...-...++
T Consensus       306 ~~g~~~q~f-~~~s~~---~lDVdW~~~~~-F~ts-~t--------------d~~i~V~kv~~~~P-~~t~~GH~g~V~a  364 (524)
T KOG0273|consen  306 HTGTVKQQF-EFHSAP---ALDVDWQSNDE-FATS-ST--------------DGCIHVCKVGEDRP-VKTFIGHHGEVNA  364 (524)
T ss_pred             cCceEEEee-eeccCC---ccceEEecCce-Eeec-CC--------------CceEEEEEecCCCc-ceeeecccCceEE
Confidence             33 22211 111111   01332222222 2221 11              11224555655432 3333434456788


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      +.+.|.| .|+.+.+..+++-.|..
T Consensus       365 lk~n~tg-~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  365 LKWNPTG-SLLASCSDDGTLKIWSM  388 (524)
T ss_pred             EEECCCC-ceEEEecCCCeeEeeec
Confidence            9999988 46677777777766664

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.85  E-value=0.27  Score=46.78  Aligned_cols=184  Identities=16%  Similarity=0.195  Sum_probs=104.9

Q ss_pred             CccCCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           80 GVLKGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      |...|-.++|-+|+. ..+..|+.||.|..|++....   ....+....|-..||+++.+.      .+++|+ +..|-.
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~~~------~~tvgd-DKtvK~  133 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQTS------FFTVGD-DKTVKQ  133 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccCceEEEEehhhhh---hhheeecccCceeeEEecccc------eEEecC-Ccceee
Confidence            334556667777764 356788889999999987643   134444445667899999855      677764 444444


Q ss_pred             EeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecCcc
Q 016199          159 ISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDLY  235 (393)
Q Consensus       159 id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~l~  235 (393)
                      +..++  ...+    .+.  ....||.-...++.+.|.                   ...+-.||..-. -++.+.-+..
T Consensus       134 wk~~~~p~~ti----lg~--s~~~gIdh~~~~~~FaTc-------------------Ge~i~IWD~~R~~Pv~smswG~D  188 (433)
T KOG0268|consen  134 WKIDGPPLHTI----LGK--SVYLGIDHHRKNSVFATC-------------------GEQIDIWDEQRDNPVSSMSWGAD  188 (433)
T ss_pred             eeccCCcceee----ecc--cccccccccccccccccc-------------------CceeeecccccCCccceeecCCC
Confidence            43333  1111    111  012233333334454442                   223555554311 1222333333


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r  302 (393)
                      ....+.+.|-+..++.+....+.|..||+....  ....++  +.-.++.|+..+++..+++..+..
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~--Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~  251 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQAS--PLKKVI--LTMRTNTICWNPEAFNFVAANEDH  251 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCC--ccceee--eeccccceecCccccceeeccccc
Confidence            445677777777788888788999999985321  122222  223578899999887777766553

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.84  E-value=2.1  Score=42.07  Aligned_cols=149  Identities=16%  Similarity=0.129  Sum_probs=89.6

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--  163 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--  163 (393)
                      -++|+++||+.|.+|..+..|..|+.++..   .++.+....+...+++|-..-     .+||.+.+.+++-.++.+-  
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~gt-----~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKGT-----SELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccc---hhhcccccccceeeeeeecCc-----cceeeeecCCceEEEehhHhH
Confidence            358999999977777778888899988754   144444455667888885422     2799998888877776543  


Q ss_pred             -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVV  241 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~  241 (393)
                       .+.+.....+     +.+|..-..++.. |..              +...+-+||++ |+  +.+. +..+-.++..++
T Consensus       278 ~vetlyGHqd~-----v~~IdaL~reR~v-tVG--------------grDrT~rlwKi-~e--esqlifrg~~~sidcv~  334 (479)
T KOG0299|consen  278 YVETLYGHQDG-----VLGIDALSRERCV-TVG--------------GRDRTVRLWKI-PE--ESQLIFRGGEGSIDCVA  334 (479)
T ss_pred             HHHHHhCCccc-----eeeechhcccceE-Eec--------------cccceeEEEec-cc--cceeeeeCCCCCeeeEE
Confidence             2222111111     2233333334332 211              11345577777 33  2222 233345788888


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      +-.|.  =|++.+.++.|..+.+..+
T Consensus       335 ~In~~--HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  335 FINDE--HFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             Eeccc--ceeeccCCceEEEeeeccc
Confidence            87665  3578888999999987543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.81  E-value=0.58  Score=46.34  Aligned_cols=102  Identities=9%  Similarity=0.078  Sum_probs=62.5

Q ss_pred             EEEEEeCCCc-eEEEeCCc-eEEEe-eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199          146 TMIVADAYKG-LLKISGNS-TVLLT-DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFD  221 (393)
Q Consensus       146 ~L~v~~~~~g-l~~id~~g-~~~l~-~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d  221 (393)
                      .|+....+.| +..+|.+| ...+. .....   .-+.+|++.|.+ .|+++-                 ....+|+.||
T Consensus       178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs---AP~~gicfspsne~l~vsV-----------------G~Dkki~~yD  237 (673)
T KOG4378|consen  178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHS---APCRGICFSPSNEALLVSV-----------------GYDKKINIYD  237 (673)
T ss_pred             eeeEeeccCCeEEEEeccCCCcccchhhhcc---CCcCcceecCCccceEEEe-----------------cccceEEEee
Confidence            3444445666 45668887 22221 11111   224589999977 455553                 2235799999


Q ss_pred             CCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC
Q 016199          222 PVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN  268 (393)
Q Consensus       222 ~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~  268 (393)
                      ...++..--+..-..-..++|.++| ..+++.+.+++|+.||+.+.+
T Consensus       238 ~~s~~s~~~l~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  238 IRSQASTDRLTYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             cccccccceeeecCCcceeeecCCc-eEEEeecCCceEEEEecccCC
Confidence            7654432211111223578999999 677888899999999998643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.81  E-value=1.2  Score=46.22  Aligned_cols=103  Identities=16%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             CCCce-EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           83 KGPED-LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~-ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      .+|-- +++++.|..|-+|..++++..||...+.   ....+...++-...+.|.++-   .|+-|+.+..+.-+..+|.
T Consensus       105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~---~th~fkG~gGvVssl~F~~~~---~~~lL~sg~~D~~v~vwnl  178 (775)
T KOG0319|consen  105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY---CTHSFKGHGGVVSSLLFHPHW---NRWLLASGATDGTVRVWNL  178 (775)
T ss_pred             CCCeEEEEEcCCCceEEeccccceEEEEEeeCCE---EEEEecCCCceEEEEEeCCcc---chhheeecCCCceEEEEEc
Confidence            34433 7899998766677789999999988664   233444445667888998764   2223455544445666776


Q ss_pred             Cc-eEEEeeccCCccccccccEEEcCCCcEEEE
Q 016199          162 NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFT  193 (393)
Q Consensus       162 ~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~t  193 (393)
                      .. .+.+. ... .....+.++++.+|+.-.++
T Consensus       179 ~~~~tcl~-~~~-~H~S~vtsL~~~~d~~~~ls  209 (775)
T KOG0319|consen  179 NDKRTCLH-TMI-LHKSAVTSLAFSEDSLELLS  209 (775)
T ss_pred             ccCchHHH-HHH-hhhhheeeeeeccCCceEEE
Confidence            53 21111 111 12345668888888854444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=95.77  E-value=2.9  Score=44.09  Aligned_cols=146  Identities=12%  Similarity=0.057  Sum_probs=80.4

Q ss_pred             CceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhee
Q 016199          128 GRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYIL  206 (393)
Q Consensus       128 ~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~  206 (393)
                      ....+++.+.-|     +..++|.+.+-|-+++.+. ...-........-..+.+++.|.-+++.++.            
T Consensus       449 ~~~~av~vs~CG-----NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa------------  511 (910)
T KOG1539|consen  449 INATAVCVSFCG-----NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA------------  511 (910)
T ss_pred             cceEEEEEeccC-----ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEc------------
Confidence            456788888888     2346665555688888764 3221110000111335689999988888874            


Q ss_pred             hhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeE
Q 016199          207 DIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNI  286 (393)
Q Consensus       207 ~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i  286 (393)
                           ...|-+..||.+++.+..-.+--..+.++..+... .++......-.|..||....+  -.+.|. +....-+.+
T Consensus       512 -----~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~k--vvR~f~-gh~nritd~  582 (910)
T KOG1539|consen  512 -----GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRK--VVREFW-GHGNRITDM  582 (910)
T ss_pred             -----cCcceEEEEecCCcceeeeeccCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhh--hhHHhh-ccccceeee
Confidence                 33455555676654422212222334555554443 345555566778888864321  112232 222344568


Q ss_pred             EECCCCCEEEEEe
Q 016199          287 RYDGEGHYLIALA  299 (393)
Q Consensus       287 ~~d~~G~lwva~~  299 (393)
                      ++++||++.+...
T Consensus       583 ~FS~DgrWlisas  595 (910)
T KOG1539|consen  583 TFSPDGRWLISAS  595 (910)
T ss_pred             EeCCCCcEEEEee
Confidence            8999999555443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=95.77  E-value=1.3  Score=41.38  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=84.8

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--  163 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--  163 (393)
                      .++-|++.++.|.+++.||.+..|+.....    ...........+.-+|..+-      .+|+++.++.|.++|.++  
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~~~~~plL~c~F~d~~------~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKFKHGAPLLDCAFADES------TIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhheecCCceeeeeccCCc------eEEEeccCceEEEEEecCCc
Confidence            447788888889999999988888876543    22222223445778887777      899998888899999876  


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC-cEEE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN-GVVL  242 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n-gi~~  242 (393)
                      ...+....++     +..|.....-...++-                 +..+.+-.+|+......   ..+..++ -.+.
T Consensus        87 ~~~igth~~~-----i~ci~~~~~~~~vIsg-----------------sWD~~ik~wD~R~~~~~---~~~d~~kkVy~~  141 (323)
T KOG1036|consen   87 EDQIGTHDEG-----IRCIEYSYEVGCVISG-----------------SWDKTIKFWDPRNKVVV---GTFDQGKKVYCM  141 (323)
T ss_pred             ceeeccCCCc-----eEEEEeeccCCeEEEc-----------------ccCccEEEEeccccccc---cccccCceEEEE
Confidence            2233222222     1233333322333431                 44567778888642211   1111111 2234


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecC
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      +-.|+.|+| .+....+..||+..
T Consensus       142 ~v~g~~LvV-g~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  142 DVSGNRLVV-GTSDRKVLIYDLRN  164 (323)
T ss_pred             eccCCEEEE-eecCceEEEEEccc
Confidence            444555655 44567899999863

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=95.74  E-value=2.9  Score=43.00  Aligned_cols=150  Identities=11%  Similarity=0.094  Sum_probs=94.0

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      -.++|+..+.+.|-++=.+|.|-.|++...-   ..+.+.  +...+..+|++.+.|      +|+-....+-|..+|+.
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---~~~~vi~g~~drsIE~L~W~e~~------RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---FLEPVIHGPEDRSIESLAWAEGG------RLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCc---eeeEEEecCCCCceeeEEEccCC------eEEeecCCceEEEEecc
Confidence            3458888877767666668888888876532   011121  234567899999888      99988766778889876


Q ss_pred             c-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE---ecCccCC
Q 016199          163 S-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL---VSDLYFA  237 (393)
Q Consensus       163 g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~---~~~l~~~  237 (393)
                      . .+.......+   ..+..+++.+.+ .+-++.                  ..|-++.++-..++++..   ...-...
T Consensus        99 ~lk~~~~~d~~g---g~IWsiai~p~~~~l~Igc------------------ddGvl~~~s~~p~~I~~~r~l~rq~sRv  157 (691)
T KOG2048|consen   99 TLKQKYNIDSNG---GAIWSIAINPENTILAIGC------------------DDGVLYDFSIGPDKITYKRSLMRQKSRV  157 (691)
T ss_pred             cCceeEEecCCC---cceeEEEeCCccceEEeec------------------CCceEEEEecCCceEEEEeecccccceE
Confidence            5 2222112222   235677777766 455552                  234566666655555432   2222445


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      -.+++.+++ +-+++++.++.|..+|.+
T Consensus       158 Lslsw~~~~-~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  158 LSLSWNPTG-TKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             EEEEecCCc-cEEEecccCceEEEEEcC
Confidence            567788888 345788888999999975

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.67  E-value=3.1  Score=42.86  Aligned_cols=111  Identities=12%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             CEEEEEecCCeEEEEEcCCCCCcceeeeeecCC--Cc--------eeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-c
Q 016199           95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG--GR--------PLGIAFANSDPDADRITMIVADAYKGLLKISGN-S  163 (393)
Q Consensus        95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~--~~--------p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g  163 (393)
                      +++|+++.++.|+.+|.++++  ..++.-....  ..        ..++++. ++      ++|+++....|+.+|.+ |
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk--~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~------~v~v~t~dg~l~ALDa~TG  140 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGK--ELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG------KVFFGTLDARLVALDAKTG  140 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCc--eeeEecCCCCcccccccccccccccceEE-CC------EEEEEcCCCEEEEEECCCC
Confidence            369999988999999988764  1111111100  00        1233443 46      89999877889999985 4


Q ss_pred             eEEEeeccCCcc--ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          164 TVLLTDEAEGQK--FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       164 ~~~l~~~~~g~~--~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      ............  ......-.+ .+|.+|++..+.++            ...|.|+.+|..||+.
T Consensus       141 k~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       141 KVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKL  193 (527)
T ss_pred             CEEeecccccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCce
Confidence            333322221111  000011112 25688887543221            2346777888777754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=95.66  E-value=1.5  Score=39.19  Aligned_cols=77  Identities=12%  Similarity=0.084  Sum_probs=48.1

Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEEEcCCCCEEEEEe
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVVLSPDQTHLVYCE  253 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~s~dg~~l~v~~  253 (393)
                      +...+..+++||.|+|.++-                 .....-..||..+++. ..+.....-...+.|+|.-. .+.+.
T Consensus       230 essavaav~vdpsgrll~sg-----------------~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~  291 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSGRLLASG-----------------HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTC  291 (350)
T ss_pred             ccceeEEEEECCCcceeeec-----------------cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEe
Confidence            33456778999999998873                 2223455566655543 22222233345677888764 44666


Q ss_pred             CCCCeEEEEEecCCCC
Q 016199          254 TSMRRCRKFYIKGKNA  269 (393)
Q Consensus       254 ~~~~ri~~~~~~g~~~  269 (393)
                      +....|..-+++|+-+
T Consensus       292 syd~~ikltdlqgdla  307 (350)
T KOG0641|consen  292 SYDMKIKLTDLQGDLA  307 (350)
T ss_pred             cccceEEEeecccchh
Confidence            7788898888887643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=95.63  E-value=2.2  Score=40.84  Aligned_cols=258  Identities=14%  Similarity=0.123  Sum_probs=142.4

Q ss_pred             cCceEEecCccCCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCcce---------eeeeecCCCc-eeeeEECCCCC
Q 016199           72 QGSEKVGYGVLKGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSL---------VHNWINTGGR-PLGIAFANSDP  140 (393)
Q Consensus        72 ~~~~~l~~g~~~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~---------~~~~~~~~~~-p~gl~~d~~G~  140 (393)
                      +...++.......-.++++-|.+. .|-++...| |..|..+..-+...         .+.+...+.. ...|...+|| 
T Consensus       130 t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg-  207 (445)
T KOG2139|consen  130 TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG-  207 (445)
T ss_pred             CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCC-
Confidence            344445444456667788888654 455666555 66555432111000         0111111222 3578888899 


Q ss_pred             CCCceEEEEEeCC--CceEEEeCCc--eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCc
Q 016199          141 DADRITMIVADAY--KGLLKISGNS--TVLLT-DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNG  215 (393)
Q Consensus       141 ~~~~~~L~v~~~~--~gl~~id~~g--~~~l~-~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g  215 (393)
                           ..|+..+.  ..|...|++.  ...+. ....|     ..-+..+|||..+|+.                 +. .
T Consensus       208 -----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg-----~slLkwSPdgd~lfaA-----------------t~-d  259 (445)
T KOG2139|consen  208 -----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG-----FSLLKWSPDGDVLFAA-----------------TC-D  259 (445)
T ss_pred             -----CEEeecccCcceEEEEcCCCCCcccccccCCCc-----eeeEEEcCCCCEEEEe-----------------cc-c
Confidence                 88887653  3477788765  22332 11112     2346899999877763                 22 2


Q ss_pred             EEEEEeCCCCeE--EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC-----c---ceeeeeccC------
Q 016199          216 RLLSFDPVTKET--KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA-----G---RVEKFIETL------  279 (393)
Q Consensus       216 ~l~~~d~~t~~~--~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~-----~---~~~~~~~~l------  279 (393)
                      ++++.-..+...  +.-..+-....+-+++|+|++|+++-...-+|+....+++..     +   .....+ .+      
T Consensus       260 avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~llia-DL~e~ti~  338 (445)
T KOG2139|consen  260 AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIA-DLQEVTIC  338 (445)
T ss_pred             ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeec-cchhhhhh
Confidence            456554322222  222222336677889999999999999999999988765421     0   111111 11      


Q ss_pred             ------CCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEee-
Q 016199          280 ------PGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYY-  352 (393)
Q Consensus       280 ------~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~-  352 (393)
                            .|-+..++-|+.|.+.+....+.+-..++                          ...+.+||.....+..+. 
T Consensus       339 ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~--------------------------k~~i~~fdtr~sp~vels~  392 (445)
T KOG2139|consen  339 AGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC--------------------------KLHISRFDTRKSPPVELSY  392 (445)
T ss_pred             cCcccccCccceeeECCCCCEEEEEEcCCchhhhh--------------------------hhhhhhhcccccCceEEEe
Confidence                  13456789999999888776553211100                          012444543322222221 


Q ss_pred             -----CCCCCccEEEEE-eCCEEEEEecCCCeEEEEeCCC
Q 016199          353 -----DPEMSLISSAIK-IGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       353 -----d~~~~~~~~~~~-~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                           ++....+++... .++.|..-..+..++.+|++.-
T Consensus       393 cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  393 CGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             cccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence                 111445554433 4578888888899999998753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=95.63  E-value=1.8  Score=39.83  Aligned_cols=150  Identities=9%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             eEEEecC-CCEEEEEecCCeEEEEEcCCCCCcceeee--eec--CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           87 DLLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHN--WIN--TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        87 ~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~~~~~~--~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      .+|+.|. |..|+.+..+..|..++.....  . +.-  ...  .......++..|.|      +++.+........+-.
T Consensus        19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~--s-~~ck~vld~~hkrsVRsvAwsp~g------~~La~aSFD~t~~Iw~   89 (312)
T KOG0645|consen   19 SVAWHPGKGVILASCGTDKAVRIWSTSSGD--S-WTCKTVLDDGHKRSVRSVAWSPHG------RYLASASFDATVVIWK   89 (312)
T ss_pred             EEEeccCCceEEEeecCCceEEEEecCCCC--c-EEEEEeccccchheeeeeeecCCC------cEEEEeeccceEEEee
Confidence            4788887 6656666778777777765321  0 211  111  12346789999999      8766666666544432


Q ss_pred             --Cc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-CCeEEE---EecCc
Q 016199          162 --NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-TKETKV---LVSDL  234 (393)
Q Consensus       162 --~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-t~~~~~---~~~~l  234 (393)
                        ++ ++.+ ...+|.. +-+..+++.++|++..+.+                 ....|+.+..+ ..+++.   +....
T Consensus        90 k~~~efecv-~~lEGHE-nEVK~Vaws~sG~~LATCS-----------------RDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   90 KEDGEFECV-ATLEGHE-NEVKCVAWSASGNYLATCS-----------------RDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             cCCCceeEE-eeeeccc-cceeEEEEcCCCCEEEEee-----------------CCCeEEEEEecCCCcEEEEeeecccc
Confidence              33 4443 3456654 3467899999999888863                 33456666443 234332   34445


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      .-.-.+.+.|-. -|+++.+..+.|..|+-.
T Consensus       151 qDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  151 QDVKHVIWHPTE-DLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             ccccEEEEcCCc-ceeEEeccCCeEEEEeec
Confidence            556778899876 478888999988887754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=95.54  E-value=1.9  Score=39.62  Aligned_cols=158  Identities=7%  Similarity=0.023  Sum_probs=93.1

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec---CCCceeeeEECCCCCCCCceEEEEEe
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN---TGGRPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~---~~~~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      ..+.++....-+++|+.|.|+.|-.++.|..+..+...++.    ++-...   ......++++.++|      +++..-
T Consensus        54 ~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e----fecv~~lEGHEnEVK~Vaws~sG------~~LATC  123 (312)
T KOG0645|consen   54 TVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE----FECVATLEGHENEVKCVAWSASG------NYLATC  123 (312)
T ss_pred             EeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc----eeEEeeeeccccceeEEEEcCCC------CEEEEe
Confidence            34445556778889999999988888889988888776655    554433   23456799999999      554442


Q ss_pred             C-CCceE--EEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          152 A-YKGLL--KISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       152 ~-~~gl~--~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      . +..+.  .++.++ .+..+ -.++. ..-+..+...|.-.|.|+.++               ..+-++|+.++ ....
T Consensus       124 SRDKSVWiWe~deddEfec~a-VL~~H-tqDVK~V~WHPt~dlL~S~SY---------------DnTIk~~~~~~-dddW  185 (312)
T KOG0645|consen  124 SRDKSVWIWEIDEDDEFECIA-VLQEH-TQDVKHVIWHPTEDLLFSCSY---------------DNTIKVYRDED-DDDW  185 (312)
T ss_pred             eCCCeEEEEEecCCCcEEEEe-eeccc-cccccEEEEcCCcceeEEecc---------------CCeEEEEeecC-CCCe
Confidence            3 34444  445444 33222 11111 112346778887778887532               23456777664 3333


Q ss_pred             EEE--ecC-ccCCCcEEEcCCCCEEEEEeCCCCeEEE
Q 016199          228 KVL--VSD-LYFANGVVLSPDQTHLVYCETSMRRCRK  261 (393)
Q Consensus       228 ~~~--~~~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~  261 (393)
                      ...  +++ -...-.++|++.|..+ ++.+..+.+..
T Consensus       186 ~c~~tl~g~~~TVW~~~F~~~G~rl-~s~sdD~tv~I  221 (312)
T KOG0645|consen  186 ECVQTLDGHENTVWSLAFDNIGSRL-VSCSDDGTVSI  221 (312)
T ss_pred             eEEEEecCccceEEEEEecCCCceE-EEecCCcceEe
Confidence            322  222 2345678889988554 44444444433

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.53  E-value=3.5  Score=42.49  Aligned_cols=54  Identities=22%  Similarity=0.148  Sum_probs=33.4

Q ss_pred             ceEEEECCC-CcEEEEeeC-C-C-----C-CccEEEE-EeCCE---EEEEecCCCeEEEEeCCCCCC
Q 016199          336 SGVFIVDLD-GKPIAHYYD-P-E-----M-SLISSAI-KIGDH---LYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       336 ~~v~~~d~~-g~~~~~~~d-~-~-----~-~~~~~~~-~~~g~---Lyigs~~~~~i~~~~~~~~~~  389 (393)
                      ..|+.+|.+ |++.-+||. + +     . .....+. +.+|+   +.+-.-.+.++..||....++
T Consensus       271 ~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       271 SSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             eeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            369999975 899888874 1 1     1 1112221 13443   666666777888998876554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.43  E-value=2.7  Score=40.57  Aligned_cols=213  Identities=11%  Similarity=0.059  Sum_probs=105.4

Q ss_pred             EEEEecCCeEEEEEcCCCCCcceeeeeec---CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce--EEEeecc
Q 016199           97 IYTGCEDGWIKRVTLNDSPADSLVHNWIN---TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST--VLLTDEA  171 (393)
Q Consensus        97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~---~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~--~~l~~~~  171 (393)
                      .|+....|.|++-.-.+.+    ++.+..   ..+.+..+....++      .+|++...++|++-+..|.  +.+....
T Consensus       102 ~~~~G~~g~i~~S~DgG~t----W~~~~~~~~~~~~~~~i~~~~~~------~~~~~g~~G~i~~S~DgG~tW~~~~~~~  171 (334)
T PRK13684        102 GWIVGQPSLLLHTTDGGKN----WTRIPLSEKLPGSPYLITALGPG------TAEMATNVGAIYRTTDGGKNWEALVEDA  171 (334)
T ss_pred             EEEeCCCceEEEECCCCCC----CeEccCCcCCCCCceEEEEECCC------cceeeeccceEEEECCCCCCceeCcCCC
Confidence            4555556666664322223    444321   12345555544445      6777755555666654442  1221111


Q ss_pred             CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE-eCCCCeEEEEecC-ccCCCcEEEcCCCCEE
Q 016199          172 EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF-DPVTKETKVLVSD-LYFANGVVLSPDQTHL  249 (393)
Q Consensus       172 ~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~-d~~t~~~~~~~~~-l~~~ngi~~s~dg~~l  249 (393)
                          ....+++.+.++|.+++..                  ..|.+++- +..+...+.+... ....+++++.++++.+
T Consensus       172 ----~g~~~~i~~~~~g~~v~~g------------------~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~  229 (334)
T PRK13684        172 ----AGVVRNLRRSPDGKYVAVS------------------SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLW  229 (334)
T ss_pred             ----cceEEEEEECCCCeEEEEe------------------CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEE
Confidence                1235678888888666552                  34556665 3332335444332 3456788888888654


Q ss_pred             EEEeCCCCeEEEEE-ecCCCCcceeeeeccCCCC-----CCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhh
Q 016199          250 VYCETSMRRCRKFY-IKGKNAGRVEKFIETLPGL-----PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVV  323 (393)
Q Consensus       250 ~v~~~~~~ri~~~~-~~g~~~~~~~~~~~~l~g~-----P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~  323 (393)
                      .+ .. .+ ..++. -++-.  ..+..  ..|..     .-.+++.+++++|++...                       
T Consensus       230 ~v-g~-~G-~~~~~s~d~G~--sW~~~--~~~~~~~~~~l~~v~~~~~~~~~~~G~~-----------------------  279 (334)
T PRK13684        230 ML-AR-GG-QIRFNDPDDLE--SWSKP--IIPEITNGYGYLDLAYRTPGEIWAGGGN-----------------------  279 (334)
T ss_pred             EE-ec-CC-EEEEccCCCCC--ccccc--cCCccccccceeeEEEcCCCCEEEEcCC-----------------------
Confidence            44 33 23 33442 22110  11111  11111     134667778889987552                       


Q ss_pred             hhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-C--CccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          324 RYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-M--SLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~--~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                  +.+++-...|+..+....+. .  .....+..++++.|+.+ ...-|.+++-
T Consensus       280 ------------G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~  330 (334)
T PRK13684        280 ------------GTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG  330 (334)
T ss_pred             ------------CeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence                        34554444566655543211 1  23334455677888875 3446666653

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=95.28  E-value=0.69  Score=43.91  Aligned_cols=125  Identities=14%  Similarity=0.125  Sum_probs=74.4

Q ss_pred             cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-C-----------ccCCCcEEEc-
Q 016199          177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-D-----------LYFANGVVLS-  243 (393)
Q Consensus       177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~-----------l~~~ngi~~s-  243 (393)
                      -++|+|..+++|++.++.                 .....|+++|+.+|++.=.+. .           +.+.+...+. 
T Consensus       144 ~HiNsV~~~~~G~yLiS~-----------------R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~  206 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISS-----------------RNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLN  206 (299)
T ss_pred             cEeeeeeecCCccEEEEe-----------------cccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEec
Confidence            357899999999988874                 334579999988876543332 1           2333444444 


Q ss_pred             ---CCCCEEEEEeC---------CCCeEEEEEecCCCCcceeeeecc-CC---CCCCeEEECCCCCEEEEEecCcchhhh
Q 016199          244 ---PDQTHLVYCET---------SMRRCRKFYIKGKNAGRVEKFIET-LP---GLPDNIRYDGEGHYLIALATEFSTYWD  307 (393)
Q Consensus       244 ---~dg~~l~v~~~---------~~~ri~~~~~~g~~~~~~~~~~~~-l~---g~P~~i~~d~~G~lwva~~~~r~~~~~  307 (393)
                         .++...++-+.         .++++..++...........+.+. .+   ....++..-++|+++|+-...      
T Consensus       207 ~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~------  280 (299)
T PF14269_consen  207 ESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNN------  280 (299)
T ss_pred             cCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCC------
Confidence               34433333331         456777777653222222222211 01   122345567789999886643      


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEee
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYY  352 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  352 (393)
                                                  +.+..++++|+++-.++
T Consensus       281 ----------------------------g~~~E~~~~G~vv~~~~  297 (299)
T PF14269_consen  281 ----------------------------GRISEFTPDGEVVWEAQ  297 (299)
T ss_pred             ----------------------------ceEEEECCCCCEEEEEE
Confidence                                        56999999999987665

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.26  E-value=0.55  Score=50.37  Aligned_cols=148  Identities=14%  Similarity=0.221  Sum_probs=83.1

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCC-CC--------Ccceeeee------ecCCCceeeeEECCCCCCCCceEEEE
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLND-SP--------ADSLVHNW------INTGGRPLGIAFANSDPDADRITMIV  149 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~-~~--------~~~~~~~~------~~~~~~p~gl~~d~~G~~~~~~~L~v  149 (393)
                      -.++.|++||+.|+.|+.|.-|..|.... +.        +...++.|      ....+....++.++++      .+++
T Consensus        72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~------~~lv  145 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD------SLLV  145 (942)
T ss_pred             eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc------cEEE
Confidence            34566999999999998887555555441 00        01112222      2234556788899988      6666


Q ss_pred             EeC-CCceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          150 ADA-YKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       150 ~~~-~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      .-. +.-|..++...++.+ ....+.. ..+-|+.+||-|..+.+.                 +....|..|....-.++
T Consensus       146 S~s~DnsViiwn~~tF~~~-~vl~~H~-s~VKGvs~DP~Gky~ASq-----------------sdDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  146 SVSLDNSVIIWNAKTFELL-KVLRGHQ-SLVKGVSWDPIGKYFASQ-----------------SDDRTLKVWRTSDWGIE  206 (942)
T ss_pred             EecccceEEEEccccceee-eeeeccc-ccccceEECCccCeeeee-----------------cCCceEEEEEcccceee
Confidence            644 455777876653222 2223322 457799999999866653                 12233444442221222


Q ss_pred             E-EecC------ccCCCcEEEcCCCCEEEEEeCCCC
Q 016199          229 V-LVSD------LYFANGVVLSPDQTHLVYCETSMR  257 (393)
Q Consensus       229 ~-~~~~------l~~~ngi~~s~dg~~l~v~~~~~~  257 (393)
                      . +...      ..+-.=+.++|||++|-.....++
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            2 2111      112233668899988877665554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.23  E-value=1.3  Score=43.42  Aligned_cols=149  Identities=13%  Similarity=0.106  Sum_probs=85.1

Q ss_pred             cCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEE----
Q 016199           92 AHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVL----  166 (393)
Q Consensus        92 ~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~----  166 (393)
                      ..++.+-+|..|..+..|+.....    ...|...++.+..+++-.+.      .+..|...+-|..++... ..+    
T Consensus       296 ~reR~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~In~~------HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  296 SRERCVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFINDE------HFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             cccceEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEeccc------ceeeccCCceEEEeeecccCceeEee
Confidence            344445555566655555553332    34444456678888887776      677775455577766433 111    


Q ss_pred             EeeccCC--ccc---cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--CccCCCc
Q 016199          167 LTDEAEG--QKF---KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--DLYFANG  239 (393)
Q Consensus       167 l~~~~~g--~~~---~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~l~~~ng  239 (393)
                      ++.....  .+.   .+++++++-+.-+|..+-+.               .+.-+||.....-..+..+..  -..+.|.
T Consensus       366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNs  430 (479)
T KOG0299|consen  366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNS  430 (479)
T ss_pred             ccccccCCccccccccceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEE
Confidence            1111111  111   25667776665566555321               234566766654334443321  2357899


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      ++|+.+|+++++.--...|+-||+..
T Consensus       431 l~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  431 LAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             EEEccCCCEEEEecccccccceeeEe
Confidence            99999999888876666788888764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=95.23  E-value=4  Score=41.38  Aligned_cols=176  Identities=13%  Similarity=0.149  Sum_probs=96.5

Q ss_pred             cccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEEEcCCCCEEEEEeCCC
Q 016199          179 TDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVVLSPDQTHLVYCETSM  256 (393)
Q Consensus       179 ~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~s~dg~~l~v~~~~~  256 (393)
                      ..++..+.-. .||++-+                  ...|||++.+.|++ ..+.......|.+.+.+-. .|+.+++..
T Consensus       136 GRDm~y~~~scDly~~gs------------------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~  196 (703)
T KOG2321|consen  136 GRDMKYHKPSCDLYLVGS------------------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTED  196 (703)
T ss_pred             CccccccCCCccEEEeec------------------CcceEEEEccccccccccccccccceeeeecCcc-ceEEecccC
Confidence            4466666543 7887732                  23599999987764 3344445566888887665 688888888


Q ss_pred             CeEEEEEecCCC-Ccceeee--eccCCCC-----CCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhh-hhhhhhhh
Q 016199          257 RRCRKFYIKGKN-AGRVEKF--IETLPGL-----PDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKV-SGMVVRYL  326 (393)
Q Consensus       257 ~ri~~~~~~g~~-~~~~~~~--~~~l~g~-----P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~-~~~~~~~~  326 (393)
                      +.+-.||..... .+..+.-  ++..|+.     +..+.++.+|- +=|++..+..-+.|+=+..|.+++- ...+|--.
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~  276 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKK  276 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceee
Confidence            999888875321 2222211  2223432     45567776663 5566666655666777777765543 33333211


Q ss_pred             CCCCCCCCCceEEEEC--------C-CCcEEEEeeCC-CCCccEEEEEeCCEEEEEec
Q 016199          327 GMPPMGKSSSGVFIVD--------L-DGKPIAHYYDP-EMSLISSAIKIGDHLYCGSV  374 (393)
Q Consensus       327 ~~~~~~~~~~~v~~~d--------~-~g~~~~~~~d~-~~~~~~~~~~~~g~Lyigs~  374 (393)
                      --|........|+-.|        + +|+.+.++..- +.+.+|. ++..|-++++.-
T Consensus       277 l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~-~p~sGm~f~Ane  333 (703)
T KOG2321|consen  277 LDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCF-VPGSGMFFTANE  333 (703)
T ss_pred             ecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceee-ecCCceEEEecC
Confidence            0011111112233332        2 36666665532 2555543 555566666643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=95.13  E-value=1.1  Score=43.34  Aligned_cols=153  Identities=16%  Similarity=0.261  Sum_probs=86.5

Q ss_pred             EEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCceE
Q 016199           88 LLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNSTV  165 (393)
Q Consensus        88 ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g~~  165 (393)
                      +++.|-- +.|..+..|..|..|+..++..   .-... .......+.|..||      .++++.. +..|..+|+..-+
T Consensus       137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---li~l~-hpd~i~S~sfn~dG------s~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---LITLD-HPDMVYSMSFNRDG------SLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             EeecccchhhHhhccCCceEEEEeccCCce---eeecC-CCCeEEEEEeccCC------ceeeeecccceeEEEcCCCCc
Confidence            4555522 3455555677888888887651   12222 34557889999999      8888766 4557778875422


Q ss_pred             EEee--ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEE--
Q 016199          166 LLTD--EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVV--  241 (393)
Q Consensus       166 ~l~~--~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~--  241 (393)
                      ++..  ..+|.   .+.-..+-.+|.+ ++...++..-             -.+-.+|++.=+.-.....+...|||-  
T Consensus       207 ~v~e~~~heG~---k~~Raifl~~g~i-~tTGfsr~se-------------Rq~aLwdp~nl~eP~~~~elDtSnGvl~P  269 (472)
T KOG0303|consen  207 VVSEGVAHEGA---KPARAIFLASGKI-FTTGFSRMSE-------------RQIALWDPNNLEEPIALQELDTSNGVLLP  269 (472)
T ss_pred             EeeecccccCC---CcceeEEeccCce-eeeccccccc-------------cceeccCcccccCcceeEEeccCCceEEe
Confidence            2221  22232   2234455667774 4433332211             123334443211111122334456655  


Q ss_pred             -EcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          242 -LSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       242 -~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                       +++|.+.+|++.-+.+.|.-|.+..+
T Consensus       270 FyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  270 FYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             eecCCCCEEEEEecCCcceEEEEecCC
Confidence             47888899999999998888887654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.13  E-value=2.6  Score=38.64  Aligned_cols=101  Identities=9%  Similarity=0.020  Sum_probs=63.1

Q ss_pred             ccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC
Q 016199          178 LTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM  256 (393)
Q Consensus       178 ~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~  256 (393)
                      .+..++.++.. .++++.+                 +...+.++|...++.......-....-++++|+|+++.+.+. .
T Consensus        66 svdql~w~~~~~d~~atas-----------------~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-d  127 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATAS-----------------GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-D  127 (313)
T ss_pred             chhhheeCCCCCcceEEec-----------------CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-c
Confidence            46677888755 6666642                 334577788766655444333344556889999988877664 6


Q ss_pred             CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          257 RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       257 ~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      .+|.-++....+....+    +.+..-+.++...++++++.+.+
T Consensus       128 D~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd~Fflt~G  167 (313)
T KOG1407|consen  128 DRITFIDARTYKIVNEE----QFKFEVNEISWNNSNDLFFLTNG  167 (313)
T ss_pred             ccEEEEEecccceeehh----cccceeeeeeecCCCCEEEEecC
Confidence            78888886432211111    22334567888778888887765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=95.09  E-value=1.1  Score=43.38  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=80.1

Q ss_pred             EEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCC
Q 016199           97 IYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEG  173 (393)
Q Consensus        97 L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g  173 (393)
                      .+++.+ ++.|..|+..+..    .....+.++....+....+|     ..+..+.-..-+-.+|..+  .... ....+
T Consensus       314 ~~~SgH~DkkvRfwD~Rs~~----~~~sv~~gg~vtSl~ls~~g-----~~lLsssRDdtl~viDlRt~eI~~~-~sA~g  383 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIRSAD----KTRSVPLGGRVTSLDLSMDG-----LELLSSSRDDTLKVIDLRTKEIRQT-FSAEG  383 (459)
T ss_pred             eeeecccccceEEEeccCCc----eeeEeecCcceeeEeeccCC-----eEEeeecCCCceeeeecccccEEEE-eeccc
Confidence            444444 7788888866554    33333456777788888877     2466664455677777766  2221 12233


Q ss_pred             cc-ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC---CCcEEEcCCCCEE
Q 016199          174 QK-FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQTHL  249 (393)
Q Consensus       174 ~~-~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~~l  249 (393)
                      .. ....+.+.++|+|.+..+                 |+..|.||.++..+++++.....-..   .+.+++++-|+.+
T Consensus       384 ~k~asDwtrvvfSpd~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L  446 (459)
T KOG0288|consen  384 FKCASDWTRVVFSPDGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL  446 (459)
T ss_pred             cccccccceeEECCCCceeee-----------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence            22 122456789998876555                 25678999999999998876544222   3456677777666


Q ss_pred             EEEe
Q 016199          250 VYCE  253 (393)
Q Consensus       250 ~v~~  253 (393)
                      +-++
T Consensus       447 lsad  450 (459)
T KOG0288|consen  447 LSAD  450 (459)
T ss_pred             hccc
Confidence            5444

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=2.3  Score=37.76  Aligned_cols=131  Identities=15%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             cEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC-CcceeeeeccCCCCCCe-EE--ECC
Q 016199          215 GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGRVEKFIETLPGLPDN-IR--YDG  290 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~~~~~~~~l~g~P~~-i~--~d~  290 (393)
                      |--|.||+++-  +.+-..-..-.|-.++.|++.|+.++ ++..+...|++.-. .....+-.   .|.|-. +.  .--
T Consensus       111 gvaf~~d~~t~--~~lg~~~y~GeGWgLt~d~~~Limsd-GsatL~frdP~tfa~~~~v~VT~---~g~pv~~LNELE~V  184 (262)
T COG3823         111 GVAFKYDADTL--EELGRFSYEGEGWGLTSDDKNLIMSD-GSATLQFRDPKTFAELDTVQVTD---DGVPVSKLNELEWV  184 (262)
T ss_pred             ceeEEEChHHh--hhhcccccCCcceeeecCCcceEeeC-CceEEEecCHHHhhhcceEEEEE---CCeecccccceeee
Confidence            45688988652  22222222235677778888877665 45677766664322 12222222   233321 11  112


Q ss_pred             CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCC--------------
Q 016199          291 EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPE--------------  355 (393)
Q Consensus       291 ~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~--------------  355 (393)
                      ||.+|.-.+..                                  ..|.+++|+ |+++.-+.-..              
T Consensus       185 dG~lyANVw~t----------------------------------~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv  230 (262)
T COG3823         185 DGELYANVWQT----------------------------------TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV  230 (262)
T ss_pred             ccEEEEeeeee----------------------------------cceEEEcCCCCcEEEEEEccCCchhcCcccccccc
Confidence            56555544422                                  348899985 77777655221              


Q ss_pred             CCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          356 MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       356 ~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                      .+.+ ...+..+++|+++-.-+.+..+++.+
T Consensus       231 lNGI-A~~~~~~r~~iTGK~wp~lfEVk~~~  260 (262)
T COG3823         231 LNGI-AHDPQQDRFLITGKLWPLLFEVKLDE  260 (262)
T ss_pred             ccce-eecCcCCeEEEecCcCceeEEEEecC
Confidence            2222 23455689999998888888877654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.05  E-value=4  Score=40.39  Aligned_cols=58  Identities=12%  Similarity=0.080  Sum_probs=31.1

Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      ++..++||+.+.+...  +.+++-+-.|...  -+......+..-.++.++.+|.+|++...
T Consensus       243 ~v~~~~dG~~~~vg~~--G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~  300 (398)
T PLN00033        243 TVNRSPDGDYVAVSSR--GNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRG  300 (398)
T ss_pred             eEEEcCCCCEEEEECC--ccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCC
Confidence            4556788865555543  5566655333210  01111111223346777889999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=95.01  E-value=2.9  Score=38.50  Aligned_cols=162  Identities=16%  Similarity=0.130  Sum_probs=95.8

Q ss_pred             CceEEec--CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE
Q 016199           73 GSEKVGY--GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA  150 (393)
Q Consensus        73 ~~~~l~~--g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~  150 (393)
                      ..|+|++  |..-.--++.+|.+.+.+.+|+.|..+..|+.++++   ....+ ..+.....+.|+.+|      ++.++
T Consensus        41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk---~la~~-k~~~~Vk~~~F~~~g------n~~l~  110 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK---QLATW-KTNSPVKRVDFSFGG------NLILA  110 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc---EEEEe-ecCCeeEEEeeccCC------cEEEE
Confidence            4566665  322223346677777788899999888889988765   13333 334455778888888      76555


Q ss_pred             eCC--Cc----eEEEeCC-------ceE-EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE
Q 016199          151 DAY--KG----LLKISGN-------STV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR  216 (393)
Q Consensus       151 ~~~--~g----l~~id~~-------g~~-~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~  216 (393)
                      ..+  .|    |..++..       +.+ .+.-....   ..++....++-|...|+-                 ...|.
T Consensus       111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~---skit~a~Wg~l~~~ii~G-----------------he~G~  170 (327)
T KOG0643|consen  111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD---SKITSALWGPLGETIIAG-----------------HEDGS  170 (327)
T ss_pred             EehhhcCcceEEEEEEccCChhhhcccCceEEecCCc---cceeeeeecccCCEEEEe-----------------cCCCc
Confidence            332  22    3333321       111 11100111   234455677777555552                 45678


Q ss_pred             EEEEeCCCCeEEEEec--CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          217 LLSFDPVTKETKVLVS--DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       217 l~~~d~~t~~~~~~~~--~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      |-+||..+++...-..  .....|.+.+++|. ..+++.+....--.+|..
T Consensus       171 is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  171 ISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             EEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeecc
Confidence            9999998875433221  23467899999998 677777766655556653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.01  E-value=0.84  Score=45.27  Aligned_cols=83  Identities=16%  Similarity=0.225  Sum_probs=53.0

Q ss_pred             CCcEEEEEeCCCCeEEEEec--CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC
Q 016199          213 PNGRLLSFDPVTKETKVLVS--DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG  290 (393)
Q Consensus       213 ~~g~l~~~d~~t~~~~~~~~--~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~  290 (393)
                      ..|.|..||..+.....-..  .-....||+++|-++.|+++--...+|+.||....+....-.+  ..|  -..+++.+
T Consensus       185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~P--lstvaf~~  260 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHP--LSTVAFSE  260 (673)
T ss_pred             cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCC--cceeeecC
Confidence            35778888875432211111  1234589999999999999998999999999864332222211  222  14588888


Q ss_pred             CCCEEEEEe
Q 016199          291 EGHYLIALA  299 (393)
Q Consensus       291 ~G~lwva~~  299 (393)
                      +|.++++..
T Consensus       261 ~G~~L~aG~  269 (673)
T KOG4378|consen  261 CGTYLCAGN  269 (673)
T ss_pred             CceEEEeec
Confidence            998776544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=94.88  E-value=3.4  Score=38.99  Aligned_cols=135  Identities=14%  Similarity=0.166  Sum_probs=75.7

Q ss_pred             EEEEEeCCCCeEEEE------ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeecc---CCCCCC
Q 016199          216 RLLSFDPVTKETKVL------VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK--NAGRVEKFIET---LPGLPD  284 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~------~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~--~~~~~~~~~~~---l~g~P~  284 (393)
                      -|..+|.-+|+.+.-      .+.+.-+..++|++||+.||..  .+..|..|++..+  ......++..+   +.|.-.
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            466667666665432      1234557889999999887664  3577888887522  11112222211   122333


Q ss_pred             eEEECCCCC--EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEE-
Q 016199          285 NIRYDGEGH--YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISS-  361 (393)
Q Consensus       285 ~i~~d~~G~--lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~-  361 (393)
                      .+++.+-..  +=++....+                                 -+|+.- .+++.+..+.... ..++. 
T Consensus       212 c~a~sP~~~~~~a~gsY~q~---------------------------------~giy~~-~~~~pl~llggh~-gGvThL  256 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQR---------------------------------VGIYND-DGRRPLQLLGGHG-GGVTHL  256 (406)
T ss_pred             eeeccCCCCcceeeecccce---------------------------------eeeEec-CCCCceeeecccC-CCeeeE
Confidence            344444322  223332211                                 134332 3556666666432 23332 


Q ss_pred             -EEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          362 -AIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       362 -~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                       ..+++++||.|+...++|.+-|+.++
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhc
Confidence             46788999999999999999887653

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.83  E-value=4.3  Score=39.63  Aligned_cols=107  Identities=18%  Similarity=0.225  Sum_probs=60.8

Q ss_pred             CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC--ceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceEEEee
Q 016199           93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG--RPLGIAFANSDPDADRITMIVADAYKGLLKISGN-STVLLTD  169 (393)
Q Consensus        93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~--~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l~~  169 (393)
                      +|+ +|+++.+|.+++++.++++    ........+  .-.+-.+-.++      .+|+....+.++.++.+ |......
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~----~~W~~~~~~~~~~~~~~v~~~~------~v~~~s~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGT----LVWSRNVGGSPYYASPPVVGDG------TVYVGTDDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCc----EEEEEecCCCeEEecCcEEcCc------EEEEecCCCeEEEEEccCCcEEEEE
Confidence            775 9999999999999986554    222222222  11222333467      88888645668889887 5333321


Q ss_pred             ccCC-ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          170 EAEG-QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       170 ~~~g-~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      .... .......... ..+|.+|++...               . .+.++.+|+.+|+.
T Consensus       180 ~~~~~~~~~~~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~  221 (370)
T COG1520         180 ETPAPLSLSIYGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTL  221 (370)
T ss_pred             ecCCccccccccCce-eecceEEEecCC---------------C-cceEEEEEccCCcE
Confidence            1111 1212122222 567889998521               1 33688888876654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.82  E-value=0.37  Score=47.26  Aligned_cols=197  Identities=14%  Similarity=0.101  Sum_probs=103.1

Q ss_pred             ccccccCceEEecCc--cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCc
Q 016199           67 NERMLQGSEKVGYGV--LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADR  144 (393)
Q Consensus        67 ~~~~l~~~~~l~~g~--~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~  144 (393)
                      .+-.+..+.+-..-.  -.||..+-+..+|++|.+|...|.|..+|..++.    ...-.+.-.....+.+-.+-     
T Consensus       112 ~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~v~Etv~Dv~~LHne-----  182 (545)
T KOG1272|consen  112 ENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEINVMETVRDVTFLHNE-----  182 (545)
T ss_pred             hhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccce----eeeeeehhhhhhhhhhhcch-----
Confidence            444444444433322  3799999999999999999999999999887664    22111222233444444333     


Q ss_pred             eEEEEEeCCCceEEEeCCce--EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          145 ITMIVADAYKGLLKISGNST--VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       145 ~~L~v~~~~~gl~~id~~g~--~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                       .++....-.-++.+|.+|.  +-+...      .-++.+.+-|-..|.++.                 +..|-+-..|-
T Consensus       183 -q~~AVAQK~y~yvYD~~GtElHClk~~------~~v~rLeFLPyHfLL~~~-----------------~~~G~L~Y~DV  238 (545)
T KOG1272|consen  183 -QFFAVAQKKYVYVYDNNGTELHCLKRH------IRVARLEFLPYHFLLVAA-----------------SEAGFLKYQDV  238 (545)
T ss_pred             -HHHHhhhhceEEEecCCCcEEeehhhc------Cchhhhcccchhheeeec-----------------ccCCceEEEee
Confidence             3333323344777887773  222211      113345555655566653                 22333444455


Q ss_pred             CCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCeEEECCCCCEEEEEe
Q 016199          223 VTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE--TLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       223 ~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~--~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+|++.. +.++.....-+.-.|-+ .+.-..-.++.+..|.++-     .+.++.  ...+--.+|++|++|+|.+++.
T Consensus       239 S~GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~s-----kePLvKiLcH~g~V~siAv~~~G~YMaTtG  312 (545)
T KOG1272|consen  239 STGKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNS-----KEPLVKILCHRGPVSSIAVDRGGRYMATTG  312 (545)
T ss_pred             chhhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCC-----cchHHHHHhcCCCcceEEECCCCcEEeecc
Confidence            5554321 12222222222222333 2223333466777776532     122221  1234457899999999888776


Q ss_pred             cCc
Q 016199          300 TEF  302 (393)
Q Consensus       300 ~~r  302 (393)
                      ..|
T Consensus       313 ~Dr  315 (545)
T KOG1272|consen  313 LDR  315 (545)
T ss_pred             ccc
Confidence            554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=94.80  E-value=2.1  Score=40.12  Aligned_cols=190  Identities=9%  Similarity=0.141  Sum_probs=96.9

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec------CCCceeeeEECCCCCCCCceEEEEEeCCCc-
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN------TGGRPLGIAFANSDPDADRITMIVADAYKG-  155 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~------~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-  155 (393)
                      ..-.+|-+.|.|..|.+|+....+..|+.++-+      -|..      ..+....+...+.|      +|||.....| 
T Consensus       217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q------cfvsanPd~qht~ai~~V~Ys~t~------~lYvTaSkDG~  284 (430)
T KOG0640|consen  217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ------CFVSANPDDQHTGAITQVRYSSTG------SLYVTASKDGA  284 (430)
T ss_pred             ceeeeEeecCCCceEEEecCCCceeEEecccee------EeeecCcccccccceeEEEecCCc------cEEEEeccCCc
Confidence            344568899999999999987777777777532      2221      12345678888999      9999988766 


Q ss_pred             eEEEeC-Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          156 LLKISG-NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       156 l~~id~-~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      |-.+|. .+  ++.+....+|.   .+....+.++|...++. +.+.     .-.++|-...--|..|.-. |....   
T Consensus       285 IklwDGVS~rCv~t~~~AH~gs---evcSa~Ftkn~kyiLsS-G~DS-----~vkLWEi~t~R~l~~YtGA-g~tgr---  351 (430)
T KOG0640|consen  285 IKLWDGVSNRCVRTIGNAHGGS---EVCSAVFTKNGKYILSS-GKDS-----TVKLWEISTGRMLKEYTGA-GTTGR---  351 (430)
T ss_pred             EEeeccccHHHHHHHHhhcCCc---eeeeEEEccCCeEEeec-CCcc-----eeeeeeecCCceEEEEecC-Ccccc---
Confidence            444553 22  33333233332   24456788888766653 2111     1112222211223344322 11000   


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                       ..+...-.|...++++++-+...+.++.||-..  ..+...+.-+..+-++.|.-++.+-.++.+..
T Consensus       352 -q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt--adr~~l~slgHn~a~R~i~HSP~~p~FmTcsd  416 (430)
T KOG0640|consen  352 -QKHRTQAVFNHTEDYVLFPDEASNSLCSWDART--ADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD  416 (430)
T ss_pred             -hhhhhhhhhcCccceEEccccccCceeeccccc--hhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence             011111112333446666666667777777531  11122222233344555555666655555543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=94.77  E-value=1  Score=42.25  Aligned_cols=147  Identities=18%  Similarity=0.223  Sum_probs=81.6

Q ss_pred             ccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC---CeEEEEe--cCccCCCcEEEcCCCCEEEEE
Q 016199          178 LTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT---KETKVLV--SDLYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       178 ~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t---~~~~~~~--~~l~~~ngi~~s~dg~~l~v~  252 (393)
                      .+.+++++.||.-+.+-+                 +.+.|..|+.+.   ++-+.+.  -.+..|.-+.|+||-+.++|+
T Consensus        88 ~vt~~~FsSdGK~lat~~-----------------~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATIS-----------------GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             ceeeeEEcCCCceeEEEe-----------------CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence            356889999997666642                 222344444322   1111111  124578999999999888777


Q ss_pred             eCCCCeEEEEEecCCCCccee---eeeccCCCCC-------CeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhh
Q 016199          253 ETSMRRCRKFYIKGKNAGRVE---KFIETLPGLP-------DNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMV  322 (393)
Q Consensus       253 ~~~~~ri~~~~~~g~~~~~~~---~~~~~l~g~P-------~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~  322 (393)
                      --..+.|+.|.+...+.|...   +..|++. ++       -+|-+...+.+.+++...                     
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~-f~~kh~v~~i~iGiA~~~k~imsas~d---------------------  208 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLE-FERKHQVDIINIGIAGNAKYIMSASLD---------------------  208 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCcccccccccc-cchhcccceEEEeecCCceEEEEecCC---------------------
Confidence            777889999987643333321   1122221 11       234444445455544433                     


Q ss_pred             hhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCC
Q 016199          323 VRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHH  376 (393)
Q Consensus       323 ~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~  376 (393)
                                   ..|+..+.+|+.+.++..........+...+|++...+...
T Consensus       209 -------------t~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT  249 (420)
T KOG2096|consen  209 -------------TKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT  249 (420)
T ss_pred             -------------CcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCC
Confidence                         34777888888888776544333334455566654444333

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=94.67  E-value=0.97  Score=40.83  Aligned_cols=165  Identities=16%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             ccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCC---CCcceeeeeecC-CCceeeeEECCCCCCCCceE
Q 016199           71 LQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDS---PADSLVHNWINT-GGRPLGIAFANSDPDADRIT  146 (393)
Q Consensus        71 l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~---~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~  146 (393)
                      +..+..++.| ..+=..|+..|+|. ||.-. ++.+++..+...   +....-+.+... =++-..|.++++|      .
T Consensus        23 ~~~a~~iG~g-w~~~~~i~~~P~g~-lY~I~-~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G------~   93 (229)
T PF14517_consen   23 SDRAITIGSG-WNNFRDIAAGPNGR-LYAIR-NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTG------V   93 (229)
T ss_dssp             HHHSEEEESS--TT-SEEEE-TTS--EEEEE-TTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-------
T ss_pred             cchhhhcCcc-ccccceEEEcCCce-EEEEE-CCceEEecCCccCcccccccCcccccCcccceeEEEecCCc------c
Confidence            5566777775 34556688999985 77655 447888732211   100111222211 0134578999999      9


Q ss_pred             EEEEeCCCceEEEeCC--ceEEE----eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199          147 MIVADAYKGLLKISGN--STVLL----TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF  220 (393)
Q Consensus       147 L~v~~~~~gl~~id~~--g~~~l----~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~  220 (393)
                      ||..+..+.|++....  +....    ...+.+..-+....|-.+++|.||.-+                  +.+++++.
T Consensus        94 LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~------------------~dg~~~~~  155 (229)
T PF14517_consen   94 LYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT------------------PDGRLYRR  155 (229)
T ss_dssp             EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE------------------TTE-EEEE
T ss_pred             EEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc------------------CCCceEEe
Confidence            9988766667777532  11111    111111112223467788999999874                  45678887


Q ss_pred             e-CCCCe-----EEEE--ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          221 D-PVTKE-----TKVL--VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       221 d-~~t~~-----~~~~--~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      . |....     .+.+  ..+.....-|.++++| .||... .++.|+|+..
T Consensus       156 ~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g-~L~~V~-~~G~lyr~~~  205 (229)
T PF14517_consen  156 YRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDG-NLWAVK-SNGKLYRGRP  205 (229)
T ss_dssp             ---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES-
T ss_pred             CCCCCCCCccccccceeccCCcccceEEeeCCCC-cEEEEe-cCCEEeccCC
Confidence            3 43221     1112  2233346678888998 677764 5788988764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=94.64  E-value=3.2  Score=39.78  Aligned_cols=149  Identities=16%  Similarity=0.201  Sum_probs=83.6

Q ss_pred             CCCce-EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeee---EECCCCCCCCceEEEEEeC---C-C
Q 016199           83 KGPED-LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGI---AFANSDPDADRITMIVADA---Y-K  154 (393)
Q Consensus        83 ~~Pe~-ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl---~~d~~G~~~~~~~L~v~~~---~-~  154 (393)
                      ..|.. +++-=+-++|.+-..+. |+.+|.++-.   ..+.+......|.|+   ....++       =|++--   . +
T Consensus        85 ~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk---lLhTI~t~~~n~~gl~AlS~n~~n-------~ylAyp~s~t~G  153 (391)
T KOG2110|consen   85 FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK---LLHTIETTPPNPKGLCALSPNNAN-------CYLAYPGSTTSG  153 (391)
T ss_pred             ecCCceEEEEEccceEEEEEccc-EEEEecccce---eehhhhccCCCccceEeeccCCCC-------ceEEecCCCCCc
Confidence            33443 33333445677766554 9999887643   233332222344443   333333       344411   2 2


Q ss_pred             ceEEEeCCce---EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE-eC-CCCeEEE
Q 016199          155 GLLKISGNST---VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF-DP-VTKETKV  229 (393)
Q Consensus       155 gl~~id~~g~---~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~-d~-~t~~~~~  229 (393)
                      -|+.+|....   ..+. ...+    ..-.++++++|.+..|-                 +..|.|.|. +. .+.++..
T Consensus       154 dV~l~d~~nl~~v~~I~-aH~~----~lAalafs~~G~llATA-----------------SeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  154 DVVLFDTINLQPVNTIN-AHKG----PLAALAFSPDGTLLATA-----------------SEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             eEEEEEcccceeeeEEE-ecCC----ceeEEEECCCCCEEEEe-----------------ccCceEEEEEEcCCccEeee
Confidence            3777776551   1221 1122    13478999999988774                 345677663 43 3344555


Q ss_pred             EecCcc--CCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          230 LVSDLY--FANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       230 ~~~~l~--~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +.++..  ....++|++|+++| .+.+.++.|..|.++
T Consensus       212 FRRG~~~~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDSQFL-AASSNTETVHIFKLE  248 (391)
T ss_pred             eeCCceeeEEEEEEECCCCCeE-EEecCCCeEEEEEec
Confidence            666643  34678899999755 555667899999885

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=94.60  E-value=3.9  Score=41.69  Aligned_cols=233  Identities=13%  Similarity=0.156  Sum_probs=116.9

Q ss_pred             EecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCce
Q 016199           77 VGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGL  156 (393)
Q Consensus        77 l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl  156 (393)
                      +..|....-.+|.+++.|..|-.|+.+|.|..|...++.   .+..+ ...+....+++.+.+.    ..++.+..+..+
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR---cvr~~-~~d~~I~~vaw~P~~~----~~vLAvA~~~~~  466 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR---CVRTV-QFDSEIRSVAWNPLSD----LCVLAVAVGECV  466 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce---EEEEE-eecceeEEEEecCCCC----ceeEEEEecCce
Confidence            444544445678899988766666778877777777653   23333 2345678899988761    123333233346


Q ss_pred             EEEeCC-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-----CCeEEEE
Q 016199          157 LKISGN-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-----TKETKVL  230 (393)
Q Consensus       157 ~~id~~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-----t~~~~~~  230 (393)
                      +.+++. |-.+........-...++.  ..+++                           .+..+...     .+.+...
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~--~~p~~---------------------------~~~~W~~~~~~e~~~~v~~~  517 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNE--SEPDA---------------------------AVVTWSRASLDELEKGVCIV  517 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCc--cCCcc---------------------------cceeechhhhhhhccceEEE
Confidence            666542 2000000000000000100  01111                           12222111     0011222


Q ss_pred             ecCccCCCcEEEcCCCCEEEEE--eCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCC-CEEEEEecCcchhhh
Q 016199          231 VSDLYFANGVVLSPDQTHLVYC--ETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG-HYLIALATEFSTYWD  307 (393)
Q Consensus       231 ~~~l~~~ngi~~s~dg~~l~v~--~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G-~lwva~~~~r~~~~~  307 (393)
                      .......+.+.++.+|+++-+.  +..+.+++.+.++..+  ....|- ...|.+-.+.+.+.- .++||+..       
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq~-------  587 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--SQSPFR-KSKGLVQRVKFHPSKPYLFVATQR-------  587 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc--ccCchh-hcCCceeEEEecCCCceEEEEecc-------
Confidence            2333445778888999866433  2345688888886322  223332 234566667776653 47777763       


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEE--EEEeCCEEEEEecCCCeEEEEeC
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISS--AIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~--~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                                   .|..+|. +.+++..+.... ..+++  +.+.+++|.+|++ ...+..+|+
T Consensus       588 -----------------------------~vRiYdL~kqelvKkL~tg~-kwiS~msihp~GDnli~gs~-d~k~~WfDl  636 (733)
T KOG0650|consen  588 -----------------------------SVRIYDLSKQELVKKLLTGS-KWISSMSIHPNGDNLILGSY-DKKMCWFDL  636 (733)
T ss_pred             -----------------------------ceEEEehhHHHHHHHHhcCC-eeeeeeeecCCCCeEEEecC-CCeeEEEEc
Confidence                                         3666664 334443333332 22232  3445589999984 457777877


Q ss_pred             CCC
Q 016199          385 NQH  387 (393)
Q Consensus       385 ~~~  387 (393)
                      +-.
T Consensus       637 dls  639 (733)
T KOG0650|consen  637 DLS  639 (733)
T ss_pred             ccC
Confidence            543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=94.58  E-value=2.3  Score=40.65  Aligned_cols=185  Identities=16%  Similarity=0.132  Sum_probs=100.9

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCCceEE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      |.+.+-.++...|.-++|+++.+|..+..||..++.   .+..+....+....+.+.+ |+      .++-+..+.-|..
T Consensus       233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~---~V~~l~GH~~~V~~V~~~~~dp------qvit~S~D~tvrl  303 (460)
T KOG0285|consen  233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA---SVHVLSGHTNPVASVMCQPTDP------QVITGSHDSTVRL  303 (460)
T ss_pred             cccceeEEEeccccceeEEecCCcceEEEeeecccc---eEEEecCCCCcceeEEeecCCC------ceEEecCCceEEE
Confidence            455666777777766678888888877778877653   1233322223334454444 55      7888877777777


Q ss_pred             EeC-Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCc
Q 016199          159 ISG-NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDL  234 (393)
Q Consensus       159 id~-~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l  234 (393)
                      +|. .|  +..+...     -..+..++..|+-+++.+. +                 ...+-+++...|.. ..+....
T Consensus       304 WDl~agkt~~tlt~h-----kksvral~lhP~e~~fASa-s-----------------~dnik~w~~p~g~f~~nlsgh~  360 (460)
T KOG0285|consen  304 WDLRAGKTMITLTHH-----KKSVRALCLHPKENLFASA-S-----------------PDNIKQWKLPEGEFLQNLSGHN  360 (460)
T ss_pred             eeeccCceeEeeecc-----cceeeEEecCCchhhhhcc-C-----------------CccceeccCCccchhhcccccc
Confidence            775 34  2223211     1224466777776665542 1                 22344555433332 1111112


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEec-CCCCcceeeeeccCCCCCC---e---EEECCCCCEEEEEec
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIK-GKNAGRVEKFIETLPGLPD---N---IRYDGEGHYLIALAT  300 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~-g~~~~~~~~~~~~l~g~P~---~---i~~d~~G~lwva~~~  300 (393)
                      ...|.+++..||  ++++...++.|+.++.+ |.+....+..+  .||.-+   |   .++|..|.-.|....
T Consensus       361 ~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~v--qpGSl~sEagI~as~fDktg~rlit~ea  429 (460)
T KOG0285|consen  361 AIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIV--QPGSLESEAGIFASCFDKTGSRLITGEA  429 (460)
T ss_pred             ceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccc--cCCccccccceeEEeecccCceEEeccC
Confidence            234555555554  88999888899998875 33332222222  233211   2   457777876666553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.57  E-value=3.4  Score=37.35  Aligned_cols=141  Identities=11%  Similarity=0.094  Sum_probs=80.3

Q ss_pred             CceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCC-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhe
Q 016199          128 GRPLGIAFANSDPDADRITMIVADA-YKGLLKISGN-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       128 ~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~  205 (393)
                      +....+.+..+|      +.-++-. ..-+-.+++- |. .+ ..+.|.. .-+-+++...|+.-+.+.           
T Consensus        18 gaV~avryN~dG------nY~ltcGsdrtvrLWNp~rg~-li-ktYsghG-~EVlD~~~s~Dnskf~s~-----------   77 (307)
T KOG0316|consen   18 GAVRAVRYNVDG------NYCLTCGSDRTVRLWNPLRGA-LI-KTYSGHG-HEVLDAALSSDNSKFASC-----------   77 (307)
T ss_pred             cceEEEEEccCC------CEEEEcCCCceEEeecccccc-ee-eeecCCC-ceeeeccccccccccccC-----------
Confidence            456777888888      6544433 3445555663 31 11 1222211 112244444555433332           


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD  284 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~  284 (393)
                            .+...++.||-.||+... +.......|.+.+..+. .++++.+....+..||..........++.+    .-|
T Consensus        78 ------GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde----a~D  146 (307)
T KOG0316|consen   78 ------GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE----AKD  146 (307)
T ss_pred             ------CCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh----hcC
Confidence                  344568899998887644 44456778999997665 788999999999999985433333333322    234


Q ss_pred             e-EEECCCCCEEEEEe
Q 016199          285 N-IRYDGEGHYLIALA  299 (393)
Q Consensus       285 ~-i~~d~~G~lwva~~  299 (393)
                      + ..+|-.++..|+-.
T Consensus       147 ~V~Si~v~~heIvaGS  162 (307)
T KOG0316|consen  147 GVSSIDVAEHEIVAGS  162 (307)
T ss_pred             ceeEEEecccEEEeec
Confidence            4 33555666666543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=94.56  E-value=3.8  Score=37.76  Aligned_cols=187  Identities=10%  Similarity=0.073  Sum_probs=100.4

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEc-CCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEE
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTL-NDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVL  166 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~-~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~  166 (393)
                      |-+..+|++||....|.....|-. ++..    .-.+....+..-.+..|.+-     +.+.-+.++.-+-.+|-..-++
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s-----~~liTGSAD~t~kLWDv~tGk~   86 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDS-----KHLITGSADQTAKLWDVETGKQ   86 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCc-----ceeeeccccceeEEEEcCCCcE
Confidence            557788888887777765444433 4333    44444334555666666654     1344444455555666433122


Q ss_pred             EeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-------CCe-EEEEecCccCCC
Q 016199          167 LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-------TKE-TKVLVSDLYFAN  238 (393)
Q Consensus       167 l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-------t~~-~~~~~~~l~~~n  238 (393)
                      ++...-+.   .+..+.++.+|++.+...-..          +  ...+.|..||..       ..+ +..+...-..++
T Consensus        87 la~~k~~~---~Vk~~~F~~~gn~~l~~tD~~----------m--g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit  151 (327)
T KOG0643|consen   87 LATWKTNS---PVKRVDFSFGGNLILASTDKQ----------M--GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT  151 (327)
T ss_pred             EEEeecCC---eeEEEeeccCCcEEEEEehhh----------c--CcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence            32221122   234677888887554421110          1  123345555543       222 222333335567


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      -.-+++-+++|+. .-..+.|.+|+....+  +...-.+....--++++..++..++|.....
T Consensus       152 ~a~Wg~l~~~ii~-Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D  211 (327)
T KOG0643|consen  152 SALWGPLGETIIA-GHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKD  211 (327)
T ss_pred             eeeecccCCEEEE-ecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccC
Confidence            7778898877654 4467899999985321  1100111111235778999999999976544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.54  E-value=0.81  Score=44.59  Aligned_cols=122  Identities=18%  Similarity=0.197  Sum_probs=59.8

Q ss_pred             CCcEEEEEeCCCCeEEEEecCc-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC--CeEEEC
Q 016199          213 PNGRLLSFDPVTKETKVLVSDL-YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP--DNIRYD  289 (393)
Q Consensus       213 ~~g~l~~~d~~t~~~~~~~~~l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P--~~i~~d  289 (393)
                      +...+|.+|.++++.+.+.++- ....|..++++.+.+|+.- ...+|.++++++.+   .+.+.+-..++-  .....+
T Consensus        58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n  133 (386)
T PF14583_consen   58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVAN  133 (386)
T ss_dssp             SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-
T ss_pred             CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCc---EEEEEECCcccccccceeeC
Confidence            4457999999999999887653 2234778889988875543 23689999996532   222221111111  123357


Q ss_pred             CCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEE
Q 016199          290 GEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAH  350 (393)
Q Consensus       290 ~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~  350 (393)
                      +|++.+++....+. -+..+.++...+++..           ..+...|+.+|.++...+.
T Consensus       134 ~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i~~idl~tG~~~~  182 (386)
T PF14583_consen  134 SDCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRIFTIDLKTGERKV  182 (386)
T ss_dssp             TTSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEEEEEETTT--EEE
T ss_pred             CCccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceEEEEECCCCceeE
Confidence            88998888754332 2222333334444332           2223468888875444433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.49  E-value=0.52  Score=50.52  Aligned_cols=174  Identities=12%  Similarity=0.068  Sum_probs=95.2

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE-Ee-
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK-IS-  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~-id-  160 (393)
                      .---+++|+|++..|-.++.|+.|..|+..+..   ..+.+....+-+-|+.+||-|      +.+....+++.++ +. 
T Consensus       130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~---~~~vl~~H~s~VKGvs~DP~G------ky~ASqsdDrtikvwrt  200 (942)
T KOG0973|consen  130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE---LLKVLRGHQSLVKGVSWDPIG------KYFASQSDDRTLKVWRT  200 (942)
T ss_pred             CccceeccCCCccEEEEecccceEEEEccccce---eeeeeecccccccceEECCcc------CeeeeecCCceEEEEEc
Confidence            344568999998756556679999999876542   244444445668899999999      7666655555333 33 


Q ss_pred             -CCc-eEEEeeccCCcc-ccccccEEEcCCCcEEEEeCCCcc--------chhhhe--ehhcccCCCcEEEEEeCCC---
Q 016199          161 -GNS-TVLLTDEAEGQK-FKLTDGVDVADDGMIYFTDASNKY--------YLREYI--LDIFEGKPNGRLLSFDPVT---  224 (393)
Q Consensus       161 -~~g-~~~l~~~~~g~~-~~~~~~l~~d~dG~l~~td~~~~~--------~~~~~~--~~~~e~~~~g~l~~~d~~t---  224 (393)
                       .-| .+.+...++..+ ..+..-+...|||..+.+-.+.+-        .++.|-  .++..+..--.+.+|+|.=   
T Consensus       201 ~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~  280 (942)
T KOG0973|consen  201 SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFER  280 (942)
T ss_pred             ccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcc
Confidence             223 233322222111 122334567788865544222111        122332  2233344434456666520   


Q ss_pred             -----------------------CeEEEEecCc------------cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          225 -----------------------KETKVLVSDL------------YFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       225 -----------------------~~~~~~~~~l------------~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                                             +.+.+-.+..            .....++++|||..||++ +.++.|..+..+.
T Consensus       281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfac-S~DGtV~~i~Fee  356 (942)
T KOG0973|consen  281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFAC-SLDGTVALIHFEE  356 (942)
T ss_pred             ccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEE-ecCCeEEEEEcch
Confidence                                   0111111111            124678899999766665 4688888888763

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.30  E-value=1.1  Score=44.71  Aligned_cols=124  Identities=15%  Similarity=0.194  Sum_probs=73.5

Q ss_pred             cEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCC
Q 016199          215 GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG  292 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G  292 (393)
                      .+++.+|.++++...+.+.....-.-+++|||+.|.++...++  .|+.+++.+..   ... +.+..+.-.+=...+||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~-Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPR-LTNGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---cee-cccCCccccCccCCCCC
Confidence            4699999988887777664444455679999999988877655  57778876543   111 22333333334567888


Q ss_pred             CEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEE
Q 016199          293 HYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYC  371 (393)
Q Consensus       293 ~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyi  371 (393)
                      +..+=.. .|.                        +.      -.|+++|.+|+..+.+.... ........+++.++-+
T Consensus       294 ~~ivf~S-dr~------------------------G~------p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         294 SKIVFTS-DRG------------------------GR------PQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             CEEEEEe-CCC------------------------CC------cceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence            8333221 211                        01      14899999988776665433 1212233445555555


Q ss_pred             Ee
Q 016199          372 GS  373 (393)
Q Consensus       372 gs  373 (393)
                      -+
T Consensus       343 ~~  344 (425)
T COG0823         343 ES  344 (425)
T ss_pred             Ee
Confidence            54

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.23  E-value=5.7  Score=38.52  Aligned_cols=50  Identities=14%  Similarity=0.236  Sum_probs=34.8

Q ss_pred             ceEEEECCCCcEEEEeeCCCCC--ccEEEEEeCCEEEEEecC----CCeEEEEeCC
Q 016199          336 SGVFIVDLDGKPIAHYYDPEMS--LISSAIKIGDHLYCGSVH----HRGILHLDVN  385 (393)
Q Consensus       336 ~~v~~~d~~g~~~~~~~d~~~~--~~~~~~~~~g~Lyigs~~----~~~i~~~~~~  385 (393)
                      ..|+.++.+|+....+..++..  .+..+.+.++.||+.+..    ...|.+++++
T Consensus       260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            5799999999888777766532  234444556899988765    3488888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.21  E-value=6  Score=38.70  Aligned_cols=149  Identities=16%  Similarity=0.217  Sum_probs=73.0

Q ss_pred             cCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC----CCCCCCCceEEEEEeCC----C--ceEEEe
Q 016199           92 AHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA----NSDPDADRITMIVADAY----K--GLLKIS  160 (393)
Q Consensus        92 ~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d----~~G~~~~~~~L~v~~~~----~--gl~~id  160 (393)
                      |... +++++ ..++++.|+++++.    +..+.  .++++.+.+-    -+|   .+..|.++...    .  .+++++
T Consensus        66 p~kS-lIigTdK~~GL~VYdL~Gk~----lq~~~--~Gr~NNVDvrygf~l~g---~~vDlavas~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   66 PAKS-LIIGTDKKGGLYVYDLDGKE----LQSLP--VGRPNNVDVRYGFPLNG---KTVDLAVASDRSDGRNSLRLFRID  135 (381)
T ss_dssp             GGG--EEEEEETTTEEEEEETTS-E----EEEE---SS-EEEEEEEEEEEETT---EEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred             cccc-eEEEEeCCCCEEEEcCCCcE----EEeec--CCCcceeeeecceecCC---ceEEEEEEecCcCCCCeEEEEEec
Confidence            4444 44554 57899999999876    55553  3667654432    133   01124454322    1  277788


Q ss_pred             CC-c-eEEEeeccCC--ccccccccEEE--cC-CCcEEEEeCCCccchhhheehhcccCCCcEEEE--Ee-CCCCeEE-E
Q 016199          161 GN-S-TVLLTDEAEG--QKFKLTDGVDV--AD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLS--FD-PVTKETK-V  229 (393)
Q Consensus       161 ~~-g-~~~l~~~~~g--~~~~~~~~l~~--d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~--~d-~~t~~~~-~  229 (393)
                      ++ + ++.+......  ..+.-+.+++.  ++ +|.+|+--..                ..|.+..  +. ...+.++ .
T Consensus       136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~  199 (381)
T PF02333_consen  136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSAT  199 (381)
T ss_dssp             TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEE
T ss_pred             CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeE
Confidence            64 4 4333211100  11222456664  33 5666654211                1233433  32 2233321 1


Q ss_pred             EecC---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          230 LVSD---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       230 ~~~~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      +.+.   -..+-|+.++.....||++|. ...||+|+.+.+
T Consensus       200 lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~  239 (381)
T PF02333_consen  200 LVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPE  239 (381)
T ss_dssp             EEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSCC
T ss_pred             EEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCCC
Confidence            2222   235788889888789999997 479999998744

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.02  E-value=6.9  Score=38.72  Aligned_cols=98  Identities=11%  Similarity=-0.073  Sum_probs=49.7

Q ss_pred             cEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-EEEEec-CccCCCcEEEcCCCCEEEEEeCCCCe
Q 016199          181 GVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-TKVLVS-DLYFANGVVLSPDQTHLVYCETSMRR  258 (393)
Q Consensus       181 ~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~r  258 (393)
                      ++...+||.+++..                  ..|.+++-+..+.. .+.+.. .-....++.+.+|+.. |+.. ..+.
T Consensus       243 ~v~~~~dG~~~~vg------------------~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l-~l~g-~~G~  302 (398)
T PLN00033        243 TVNRSPDGDYVAVS------------------SRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGL-WLLT-RGGG  302 (398)
T ss_pred             eEEEcCCCCEEEEE------------------CCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCE-EEEe-CCce
Confidence            45566777666552                  23556665444333 233322 2233567778888864 4444 3466


Q ss_pred             EEEEEecCCCCcceeeeec-cCC--C-CCCeEEECCCCCEEEEEe
Q 016199          259 CRKFYIKGKNAGRVEKFIE-TLP--G-LPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       259 i~~~~~~g~~~~~~~~~~~-~l~--g-~P~~i~~d~~G~lwva~~  299 (393)
                      +++-.-+|. .-+...|.. ..+  + ...++.+.+++.+|++..
T Consensus       303 l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~  346 (398)
T PLN00033        303 LYVSKGTGL-TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG  346 (398)
T ss_pred             EEEecCCCC-cccccceeecccCCCCcceEEEEEcCCCcEEEEEC
Confidence            766543332 111112221 111  1 134466778899998766

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=94.02  E-value=0.57  Score=47.21  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=88.0

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeee---eecCCC-----ceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHN---WINTGG-----RPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~---~~~~~~-----~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      +-+.+..++|-+|+.+|.|-.||+..+..-..+..   +....+     .+..+.|..+|     -.+-||+..+.++.+
T Consensus       181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-----L~~aVGts~G~v~iy  255 (703)
T KOG2321|consen  181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-----LHVAVGTSTGSVLIY  255 (703)
T ss_pred             eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-----eeEEeeccCCcEEEE
Confidence            34445555677888899999999876541111111   111111     36789999888     246666666779999


Q ss_pred             eCCc-eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          160 SGNS-TVLLT-DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       160 d~~g-~~~l~-~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      |... ...+. +.....++...+.+..+....++-.|                   ...+-.||+.+|+.-.......-.
T Consensus       256 DLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-------------------k~~~kiWd~~~Gk~~asiEpt~~l  316 (703)
T KOG2321|consen  256 DLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-------------------KRILKIWDECTGKPMASIEPTSDL  316 (703)
T ss_pred             EcccCCceeecccCCccceeeecccccCCCceEEecc-------------------hHHhhhcccccCCceeeccccCCc
Confidence            9765 33333 23333333322232222223444443                   112445788888776666666668


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      |.+|+-|++..+ +.......+..|.+.
T Consensus       317 ND~C~~p~sGm~-f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  317 NDFCFVPGSGMF-FTANESSKMHTYYIP  343 (703)
T ss_pred             CceeeecCCceE-EEecCCCcceeEEcc
Confidence            999999998544 444456777777763

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.00  E-value=7.1  Score=38.74  Aligned_cols=201  Identities=12%  Similarity=0.063  Sum_probs=87.7

Q ss_pred             CCEEEEEe-cCCeEEEEEcCCCCC-cceeeeeec-------CCCceeeeEECCCCCCCCceEEEEEeC-------CCceE
Q 016199           94 SKLIYTGC-EDGWIKRVTLNDSPA-DSLVHNWIN-------TGGRPLGIAFANSDPDADRITMIVADA-------YKGLL  157 (393)
Q Consensus        94 g~~L~~~~-~~g~I~~~~~~~~~~-~~~~~~~~~-------~~~~p~gl~~d~~G~~~~~~~L~v~~~-------~~gl~  157 (393)
                      -+.|++.. .+++|+.+|..+... ....+.+..       ...+|+-..--++|      +++|...       .+|++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G------~imIS~lGd~~G~g~Ggf~  160 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG------RIMISALGDADGNGPGGFV  160 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--------EEEEEEEETTS-S--EEE
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc------cEEEEeccCCCCCCCCcEE
Confidence            34676655 588999999874332 222232221       11357777777889      8888732       24688


Q ss_pred             EEeCCceEEEeec-cCCccccccccEEEcCCCcEEEEeCCCccc--hhhhee-hhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          158 KISGNSTVLLTDE-AEGQKFKLTDGVDVADDGMIYFTDASNKYY--LREYIL-DIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       158 ~id~~g~~~l~~~-~~g~~~~~~~~l~~d~dG~l~~td~~~~~~--~~~~~~-~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      .+|.++.++.... .+.....+..++...+..++.++..-....  ...+.. ++..+.-..+|..+|-.+++.....+-
T Consensus       161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             EE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             EEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            8888774333322 222223456688888988888886321110  011111 222333345799999987776543321


Q ss_pred             ---ccCCCcEEEc--CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec------------cC-------CCCCCeEEEC
Q 016199          234 ---LYFANGVVLS--PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE------------TL-------PGLPDNIRYD  289 (393)
Q Consensus       234 ---l~~~ngi~~s--~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~------------~l-------~g~P~~i~~d  289 (393)
                         ...|--|.+.  |+...=|+.....+.|++|..+.+..=+.+..++            .+       |+++..|.++
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence               1122233343  4455667877788999999874221111222221            11       4567788888


Q ss_pred             CCCC-EEEEEec
Q 016199          290 GEGH-YLIALAT  300 (393)
Q Consensus       290 ~~G~-lwva~~~  300 (393)
                      .|.+ +||+++.
T Consensus       321 lDDrfLYvs~W~  332 (461)
T PF05694_consen  321 LDDRFLYVSNWL  332 (461)
T ss_dssp             TTS-EEEEEETT
T ss_pred             cCCCEEEEEccc
Confidence            8888 7888874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.00  E-value=2.7  Score=41.49  Aligned_cols=146  Identities=16%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             CCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           83 KGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ..-.+.++.|.. +.+.+|+.||.|..|+......  .+..+ +.+.....+.+-+.|      .+++...+..+-.+|.
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~el-nhg~pVe~vl~lpsg------s~iasAgGn~vkVWDl  224 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVEL-NHGCPVESVLALPSG------SLIASAGGNSVKVWDL  224 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEEe-cCCCceeeEEEcCCC------CEEEEcCCCeEEEEEe
Confidence            344556666644 4677888999999998775430  02222 233445678888888      7877755666777786


Q ss_pred             C-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC--
Q 016199          162 N-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN--  238 (393)
Q Consensus       162 ~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n--  238 (393)
                      - |-+.+.... . ....+..+....++.-.++-                 .-.+.+-.||..+  .+.. ....+|+  
T Consensus       225 ~~G~qll~~~~-~-H~KtVTcL~l~s~~~rLlS~-----------------sLD~~VKVfd~t~--~Kvv-~s~~~~~pv  282 (487)
T KOG0310|consen  225 TTGGQLLTSMF-N-HNKTVTCLRLASDSTRLLSG-----------------SLDRHVKVFDTTN--YKVV-HSWKYPGPV  282 (487)
T ss_pred             cCCceehhhhh-c-ccceEEEEEeecCCceEeec-----------------ccccceEEEEccc--eEEE-Eeeecccce
Confidence            5 422222111 1 12346678888887433331                 3345677787432  2222 2334443  


Q ss_pred             -cEEEcCCCCEEEEEeCCCCeEE
Q 016199          239 -GVVLSPDQTHLVYCETSMRRCR  260 (393)
Q Consensus       239 -gi~~s~dg~~l~v~~~~~~ri~  260 (393)
                       .+++++|++.+++.-+ ++-+.
T Consensus       283 Lsiavs~dd~t~viGms-nGlv~  304 (487)
T KOG0310|consen  283 LSIAVSPDDQTVVIGMS-NGLVS  304 (487)
T ss_pred             eeEEecCCCceEEEecc-cceee
Confidence             5789999988877654 44333

>PHA02713 hypothetical protein; Provisional

Probab=93.77  E-value=9.7  Score=39.54  Aligned_cols=218  Identities=11%  Similarity=0.047  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCcceeeeeecCCCc--eeeeEECCCCCCCCceEEEEEeCCC-------ceEEEeCCc-e-EEEeeccCC
Q 016199          105 WIKRVTLNDSPADSLVHNWINTGGR--PLGIAFANSDPDADRITMIVADAYK-------GLLKISGNS-T-VLLTDEAEG  173 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~~~--p~gl~~d~~G~~~~~~~L~v~~~~~-------gl~~id~~g-~-~~l~~~~~g  173 (393)
                      .+.+|++..+.    +.........  ..+++.- +|      .||+.....       .+.++|+.. . ..+.. ...
T Consensus       273 ~v~~yd~~~~~----W~~l~~mp~~r~~~~~a~l-~~------~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-m~~  340 (557)
T PHA02713        273 CILVYNINTME----YSVISTIPNHIINYASAIV-DN------EIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-MIK  340 (557)
T ss_pred             CEEEEeCCCCe----EEECCCCCccccceEEEEE-CC------EEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-Ccc
Confidence            46788887765    5554432211  1334443 56      888874421       266777654 1 11111 111


Q ss_pred             ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC---CcEEEcCCCCEEE
Q 016199          174 QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA---NGVVLSPDQTHLV  250 (393)
Q Consensus       174 ~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~---ngi~~s~dg~~l~  250 (393)
                        .+.-.++ ..-+|.||+--...            .......+.+|||.+++.+.+.. +..+   .+++. -+| .||
T Consensus       341 --~R~~~~~-~~~~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IY  402 (557)
T PHA02713        341 --NRCRFSL-AVIDDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIY  402 (557)
T ss_pred             --hhhceeE-EEECCEEEEECCcC------------CCCCCceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEE
Confidence              1111122 33478898763210            00123458999999988876543 2211   22222 345 678


Q ss_pred             EEeCC-----------------------CCeEEEEEecCCCCcceeeeeccCC--CCCCeEEECCCCCEEEEEecCcchh
Q 016199          251 YCETS-----------------------MRRCRKFYIKGKNAGRVEKFIETLP--GLPDNIRYDGEGHYLIALATEFSTY  305 (393)
Q Consensus       251 v~~~~-----------------------~~ri~~~~~~g~~~~~~~~~~~~l~--g~P~~i~~d~~G~lwva~~~~r~~~  305 (393)
                      +....                       ...+.+|++..++   -+... .++  ...-+++. -+|.+||........ 
T Consensus       403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~-~m~~~r~~~~~~~-~~~~IYv~GG~~~~~-  476 (557)
T PHA02713        403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLP-NFWTGTIRPGVVS-HKDDIYVVCDIKDEK-  476 (557)
T ss_pred             EEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecC-CCCcccccCcEEE-ECCEEEEEeCCCCCC-
Confidence            76532                       2357888875432   11111 221  11112332 357888763311000 


Q ss_pred             hhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCC-cEEEEee-CCCCCccEEEEEeCCEEEEEecCCC--eEEE
Q 016199          306 WDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDG-KPIAHYY-DPEMSLISSAIKIGDHLYCGSVHHR--GILH  381 (393)
Q Consensus       306 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~-d~~~~~~~~~~~~~g~Lyigs~~~~--~i~~  381 (393)
                                                 .....+.++|++. +.-.... .+.......+...+|+||+-+-...  .+-+
T Consensus       477 ---------------------------~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~  529 (557)
T PHA02713        477 ---------------------------NVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDT  529 (557)
T ss_pred             ---------------------------ccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhh
Confidence                                       0012478999986 4443333 2332233455667899998754333  3445


Q ss_pred             EeCC
Q 016199          382 LDVN  385 (393)
Q Consensus       382 ~~~~  385 (393)
                      ||..
T Consensus       530 yd~~  533 (557)
T PHA02713        530 FNVY  533 (557)
T ss_pred             cCcc
Confidence            5543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.66  E-value=7.2  Score=37.69  Aligned_cols=88  Identities=15%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             CCCcEEEEEeCCCCeEEEEecC-c-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC
Q 016199          212 KPNGRLLSFDPVTKETKVLVSD-L-YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD  289 (393)
Q Consensus       212 ~~~g~l~~~d~~t~~~~~~~~~-l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d  289 (393)
                      +..+.|-.||+..++.-+..-+ . .....+++.|+|.++|++++ .+.+..||+.+.+...  .+.++..|-+.+|..+
T Consensus       223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g--~~~kg~tGsirsih~h  299 (412)
T KOG3881|consen  223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLG--CGLKGITGSIRSIHCH  299 (412)
T ss_pred             ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeec--cccCCccCCcceEEEc
Confidence            5567899999985543222212 1 22356778899999999886 6789999986543221  2234566778889999


Q ss_pred             CCCCEEEEEecCc
Q 016199          290 GEGHYLIALATEF  302 (393)
Q Consensus       290 ~~G~lwva~~~~r  302 (393)
                      +.+.+...+.-.|
T Consensus       300 p~~~~las~GLDR  312 (412)
T KOG3881|consen  300 PTHPVLASCGLDR  312 (412)
T ss_pred             CCCceEEeeccce
Confidence            8888777666443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=93.57  E-value=4.7  Score=39.25  Aligned_cols=185  Identities=11%  Similarity=0.083  Sum_probs=96.2

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .|...+-.++.+|++++.+...++++.+..|+.+...-   ..++.........+.|-...     .++.-+.+..-|-.
T Consensus       216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~---~~TLsGHtdkVt~ak~~~~~-----~~vVsgs~DRtiK~  287 (459)
T KOG0288|consen  216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL---RHTLSGHTDKVTAAKFKLSH-----SRVVSGSADRTIKL  287 (459)
T ss_pred             hccCCCcceeeecCCCceEEeecCCCceeeeeccchhh---hhhhcccccceeeehhhccc-----cceeeccccchhhh
Confidence            34445566799999998888888898888888765430   11111111222333332211     02222222222333


Q ss_pred             EeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199          159 ISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN  238 (393)
Q Consensus       159 id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n  238 (393)
                      .|.... ...  ..-.+...+++|+..  +...+++                 ...+.|-.||..+..............
T Consensus       288 WDl~k~-~C~--kt~l~~S~cnDI~~~--~~~~~Sg-----------------H~DkkvRfwD~Rs~~~~~sv~~gg~vt  345 (459)
T KOG0288|consen  288 WDLQKA-YCS--KTVLPGSQCNDIVCS--ISDVISG-----------------HFDKKVRFWDIRSADKTRSVPLGGRVT  345 (459)
T ss_pred             hhhhhh-hee--ccccccccccceEec--ceeeeec-----------------ccccceEEEeccCCceeeEeecCccee
Confidence            343220 000  001123457787765  3344442                 223457778865555444444445678


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-----CeEEECCCCCEEEEE
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-----DNIRYDGEGHYLIAL  298 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-----~~i~~d~~G~lwva~  298 (393)
                      .+.++.+|..++.+ +-...+-.+++.+...  ...|-  -+++-     .-++++++|.|..+.
T Consensus       346 Sl~ls~~g~~lLss-sRDdtl~viDlRt~eI--~~~~s--A~g~k~asDwtrvvfSpd~~YvaAG  405 (459)
T KOG0288|consen  346 SLDLSMDGLELLSS-SRDDTLKVIDLRTKEI--RQTFS--AEGFKCASDWTRVVFSPDGSYVAAG  405 (459)
T ss_pred             eEeeccCCeEEeee-cCCCceeeeecccccE--EEEee--ccccccccccceeEECCCCceeeec
Confidence            89999999888777 4467788888754321  11121  11121     236788888755543

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=93.51  E-value=0.57  Score=42.28  Aligned_cols=133  Identities=14%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             cccccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc----eeeeeecC-CCceeeeEECCCCCCC
Q 016199           68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS----LVHNWINT-GGRPLGIAFANSDPDA  142 (393)
Q Consensus        68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~----~~~~~~~~-~~~p~gl~~d~~G~~~  142 (393)
                      ++.+....+|+.+.-..=..|++++.| .||.-..+|.++|..........    ..+.+... -.....+.++++|   
T Consensus        66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G-~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~G---  141 (229)
T PF14517_consen   66 NTWDSGSKQIGDGGWNSFKFIFFDPTG-VLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNG---  141 (229)
T ss_dssp             --HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS---
T ss_pred             ccccccCcccccCcccceeEEEecCCc-cEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCc---
Confidence            444566788888822222389999998 59998999999887654332110    01112111 1236778899999   


Q ss_pred             CceEEEEEeCCCceEEE-eCCc-eEEEe---eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEE
Q 016199          143 DRITMIVADAYKGLLKI-SGNS-TVLLT---DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRL  217 (393)
Q Consensus       143 ~~~~L~v~~~~~gl~~i-d~~g-~~~l~---~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l  217 (393)
                         .||+-+..+.+++. .+++ .....   ..+.+......+-|...++|+||..+                  ..|.|
T Consensus       142 ---vLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~------------------~~G~l  200 (229)
T PF14517_consen  142 ---VLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVK------------------SNGKL  200 (229)
T ss_dssp             ----EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-------------------ETTEE
T ss_pred             ---cEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEe------------------cCCEE
Confidence               89988755447766 3332 11110   01111122224567788999999873                  35789


Q ss_pred             EEEeCCCC
Q 016199          218 LSFDPVTK  225 (393)
Q Consensus       218 ~~~d~~t~  225 (393)
                      ||+.+.+.
T Consensus       201 yr~~~p~~  208 (229)
T PF14517_consen  201 YRGRPPQN  208 (229)
T ss_dssp             EEES---S
T ss_pred             eccCCccc
Confidence            99987653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.50  E-value=0.35  Score=30.69  Aligned_cols=41  Identities=20%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             cCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC
Q 016199           92 AHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA  136 (393)
Q Consensus        92 ~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d  136 (393)
                      ++++.||++.. ++.|..++..+..    .......+..|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~----~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK----VIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe----EEEEEECCCCCceEEeC
Confidence            46778999886 6689999987654    33333456778888874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.40  E-value=5.1  Score=37.71  Aligned_cols=151  Identities=11%  Similarity=0.069  Sum_probs=79.7

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeCCCceEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADAYKGLLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~~~gl~~id~~g  163 (393)
                      -.++++.|.|+....-..|+.+..||+-.+.    .....+....+.-+.+++.|      . +++. ...+|-.+..+.
T Consensus       130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr----~a~v~~L~~~at~v~w~~~G------d~F~v~-~~~~i~i~q~d~  198 (362)
T KOG0294|consen  130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGR----VAFVLNLKNKATLVSWSPQG------DHFVVS-GRNKIDIYQLDN  198 (362)
T ss_pred             cceeEecCCCceEEEEcCCceeeeehhhcCc----cceeeccCCcceeeEEcCCC------CEEEEE-eccEEEEEeccc
Confidence            4567788877744433446666667765543    22223334456668888888      5 4444 456655554433


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEE-
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVV-  241 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~-  241 (393)
                      ..++. .....  ..+..+.+...+.+.++                  ..++.+..+|.+.... ..+...-...-++. 
T Consensus       199 A~v~~-~i~~~--~r~l~~~~l~~~~L~vG------------------~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~  257 (362)
T KOG0294|consen  199 ASVFR-EIENP--KRILCATFLDGSELLVG------------------GDNEWISLKDTDSDTPLTEFLAHENRVKDIAS  257 (362)
T ss_pred             HhHhh-hhhcc--ccceeeeecCCceEEEe------------------cCCceEEEeccCCCccceeeecchhheeeeEE
Confidence            11111 00000  11234455555667666                  2334566677654322 11222223344555 


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      +......++++.+..|.|..|+++-+
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEcccc
Confidence            33223367888888999999988754

>smart00284 OLF Olfactomedin-like domains

Probab=93.18  E-value=7  Score=36.09  Aligned_cols=149  Identities=14%  Similarity=0.188  Sum_probs=82.4

Q ss_pred             cCCCceEEEecCCCEEEEE-ecCCeEEEEEcCCCCCcceeeeeecC--------------CCceeeeEECCCCCCCCceE
Q 016199           82 LKGPEDLLYDAHSKLIYTG-CEDGWIKRVTLNDSPADSLVHNWINT--------------GGRPLGIAFANSDPDADRIT  146 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~-~~~g~I~~~~~~~~~~~~~~~~~~~~--------------~~~p~gl~~d~~G~~~~~~~  146 (393)
                      ..|.-.+++.  |. ||.- .....|++++..++.    +......              +..-..++.|.+|       
T Consensus        74 ~~GtG~VVYn--gs-lYY~~~~s~~iiKydL~t~~----v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-------  139 (255)
T smart00284       74 GQGTGVVVYN--GS-LYFNKFNSHDICRFDLTTET----YQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG-------  139 (255)
T ss_pred             cccccEEEEC--ce-EEEEecCCccEEEEECCCCc----EEEEEecCccccccccccccCCCccEEEEEcCCc-------
Confidence            3555556663  44 5442 234579999998875    3322111              0112478889988       


Q ss_pred             EEEEeC---CCc---eEEEeCCceEE---EeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE-
Q 016199          147 MIVADA---YKG---LLKISGNSTVL---LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR-  216 (393)
Q Consensus       147 L~v~~~---~~g---l~~id~~g~~~---l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~-  216 (393)
                      |||--+   ..|   |-++|++.+++   +.........  .+.  +---|.||++++..              ....+ 
T Consensus       140 LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa--~na--FmvCGvLY~~~s~~--------------~~~~~I  201 (255)
T smart00284      140 LWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSA--SNA--FMICGILYVTRSLG--------------SKGEKV  201 (255)
T ss_pred             eEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccc--ccc--EEEeeEEEEEccCC--------------CCCcEE
Confidence            887622   223   34678876322   2222111111  122  22358899997422              12223 


Q ss_pred             EEEEeCCCCeEEEEe----cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          217 LLSFDPVTKETKVLV----SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       217 l~~~d~~t~~~~~~~----~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      -+.||..+++...+.    .......-+...|..+.||+-+.  +.+..|++
T Consensus       202 ~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdn--g~~l~Y~v  251 (255)
T smart00284      202 FYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNN--GHLVHYDI  251 (255)
T ss_pred             EEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeC--CeEEEEEE
Confidence            567898876543321    11233445778888889999875  67888876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=92.89  E-value=8.3  Score=36.15  Aligned_cols=188  Identities=16%  Similarity=0.246  Sum_probs=97.1

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY  153 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~  153 (393)
                      ...++.+. .+-.+|......+.+..|+.|+.|..||+....   ....+ ..+.....+.... .      +|.||...
T Consensus        87 ~~~igth~-~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~---~~~~~-d~~kkVy~~~v~g-~------~LvVg~~~  154 (323)
T KOG1036|consen   87 EDQIGTHD-EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV---VVGTF-DQGKKVYCMDVSG-N------RLVVGTSD  154 (323)
T ss_pred             ceeeccCC-CceEEEEeeccCCeEEEcccCccEEEEeccccc---ccccc-ccCceEEEEeccC-C------EEEEeecC
Confidence            34444442 445566666544557788889999999987432   01122 2234455555543 2      79998888


Q ss_pred             CceEEEeCCc-eEEEeeccCCccc-cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEE--EeCC----CC
Q 016199          154 KGLLKISGNS-TVLLTDEAEGQKF-KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLS--FDPV----TK  225 (393)
Q Consensus       154 ~gl~~id~~g-~~~l~~~~~g~~~-~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~--~d~~----t~  225 (393)
                      ..+..+|... ...+  ......+ ..+..|+.-|++.=|+..+                 -.|||..  +|+.    .+
T Consensus       155 r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sS-----------------ieGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSS-----------------IEGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             ceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEe-----------------ecceEEEEccCCchHHhhh
Confidence            8888888644 1111  0000111 1133455555444344421                 1233332  2221    01


Q ss_pred             eE----EEE-ec--C-ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe---EEECCCCCE
Q 016199          226 ET----KVL-VS--D-LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN---IRYDGEGHY  294 (393)
Q Consensus       226 ~~----~~~-~~--~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~---i~~d~~G~l  294 (393)
                      +.    ... ..  . ....|.|+|+|--.+ +++.-..+-|.+|++...|  +..    ++..++.+   ++++.+|..
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-faTgGsDG~V~~Wd~~~rK--rl~----q~~~~~~SI~slsfs~dG~~  288 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-FATGGSDGIVNIWDLFNRK--RLK----QLAKYETSISSLSFSMDGSL  288 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccce-EEecCCCceEEEccCcchh--hhh----hccCCCCceEEEEeccCCCe
Confidence            10    000 01  1 234699999987544 4666667888888875332  122    34445554   567889985


Q ss_pred             E-EEEe
Q 016199          295 L-IALA  299 (393)
Q Consensus       295 w-va~~  299 (393)
                      . ||..
T Consensus       289 LAia~s  294 (323)
T KOG1036|consen  289 LAIASS  294 (323)
T ss_pred             EEEEec
Confidence            4 5543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=92.81  E-value=9.5  Score=36.65  Aligned_cols=146  Identities=12%  Similarity=0.205  Sum_probs=80.4

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccCCccccccccE-EEcCC-CcEEEEeCCCccchhhhee
Q 016199          129 RPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGV-DVADD-GMIYFTDASNKYYLREYIL  206 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~g~~~~~~~~l-~~d~d-G~l~~td~~~~~~~~~~~~  206 (393)
                      ..+.+.+.++       +|.|+-. ..|+.+|.+.++.+.+ .+..+ ..+.++ +..++ ++-|++=.+.         
T Consensus        89 ~IL~VrmNr~-------RLvV~Le-e~IyIydI~~MklLhT-I~t~~-~n~~gl~AlS~n~~n~ylAyp~s---------  149 (391)
T KOG2110|consen   89 SILAVRMNRK-------RLVVCLE-ESIYIYDIKDMKLLHT-IETTP-PNPKGLCALSPNNANCYLAYPGS---------  149 (391)
T ss_pred             ceEEEEEccc-------eEEEEEc-ccEEEEecccceeehh-hhccC-CCccceEeeccCCCCceEEecCC---------
Confidence            3466666654       7988854 4499999877444432 22111 122333 34443 3455552211         


Q ss_pred             hhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-CCCCC
Q 016199          207 DIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-PGLPD  284 (393)
Q Consensus       207 ~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-~g~P~  284 (393)
                           ...|.|+.||..+=+... +...-.....++|++|| .++.+.+..|+|.|...-.+ ......|-.+. +..--
T Consensus       150 -----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~Iy  222 (391)
T KOG2110|consen  150 -----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSIY  222 (391)
T ss_pred             -----CCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEEE
Confidence                 346789999976433222 22223345679999999 57788888898887553211 11122232221 11123


Q ss_pred             eEEECCCCCEEEEEec
Q 016199          285 NIRYDGEGHYLIALAT  300 (393)
Q Consensus       285 ~i~~d~~G~lwva~~~  300 (393)
                      .+++++++.+..+...
T Consensus       223 SL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSN  238 (391)
T ss_pred             EEEECCCCCeEEEecC
Confidence            4678999997776543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=92.79  E-value=15  Score=38.98  Aligned_cols=153  Identities=13%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcce---eeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSL---VHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~---~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      .+.+++++++.+-++..+|+|..|.--+..+++.   .-+|-  .....+++|..+|     ..||-|..+.-+.++...
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH--~~~V~~L~fS~~G-----~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH--HDEVNSLSFSSDG-----AYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec--ccccceeEEecCC-----ceEeecccceEEEEEeec
Confidence            3477889998777777899998887544121110   11221  2356789999999     145555333334455443


Q ss_pred             c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE------------
Q 016199          163 S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV------------  229 (393)
Q Consensus       163 g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~------------  229 (393)
                      . .+.+...... +   +-++.+.+|+++|.....                 ...+..+...+-+...            
T Consensus       282 T~~kqfLPRLgs-~---I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~  340 (792)
T KOG1963|consen  282 TGKKQFLPRLGS-P---ILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPST  340 (792)
T ss_pred             CCCcccccccCC-e---eEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccc
Confidence            3 2222222222 2   347889999988865421                 1223333221111110            


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      -.....++.+++++|.-+.+.+ ....+.|..|++-.+
T Consensus       341 k~~~~~l~t~~~idpr~~~~vl-n~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  341 KTRPQSLTTGVSIDPRTNSLVL-NGHPGHVQFYDLYTD  377 (792)
T ss_pred             cccccccceeEEEcCCCCceee-cCCCceEEEEecccc
Confidence            0112456788999996544544 345789999998654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.77  E-value=8.9  Score=36.22  Aligned_cols=160  Identities=15%  Similarity=0.055  Sum_probs=90.9

Q ss_pred             EEEecCCeEEEEEcCCCCCc--ceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCceE-EEeecc
Q 016199           98 YTGCEDGWIKRVTLNDSPAD--SLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNSTV-LLTDEA  171 (393)
Q Consensus        98 ~~~~~~g~I~~~~~~~~~~~--~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~~-~l~~~~  171 (393)
                      .+.+.+|.|.-|++.-....  ..+..+.+  .+..-.|+++...+   ..+.||.++...+ |-.+|.+-.+ .+....
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~---~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTG---GGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecC---CCceEEEeccCCCceEEecCccccccCCCCc
Confidence            45667888888876433210  00222211  12224577766331   0128999988654 5555543211 111111


Q ss_pred             --CCccc-cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCC
Q 016199          172 --EGQKF-KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQ  246 (393)
Q Consensus       172 --~g~~~-~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg  246 (393)
                        ...+. ..|..|.. -.|+||++=+.++-..    ++-..+.+.|-|-.||+.+.-++++.++  |.-|.|+++.|-+
T Consensus       181 ~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~----~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       181 IDPALPAGYAPFNVQN-LGGTLYVTYAQQDADR----NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             cCCCCCCCCCCcceEE-ECCeEEEEEEecCCcc----cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhh
Confidence              11121 22445532 2579999843322111    2223345677899999987777777654  7889999997642


Q ss_pred             -----CEEEEEeCCCCeEEEEEec
Q 016199          247 -----THLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       247 -----~~l~v~~~~~~ri~~~~~~  265 (393)
                           ..|+|.+.+.++|..||..
T Consensus       256 FG~~sg~lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       256 FGSLSGALLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             hCCCCCCeEEeecCCceeEEecCC
Confidence                 2688999999999999974

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.59  E-value=0.62  Score=29.52  Aligned_cols=42  Identities=19%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD  289 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d  289 (393)
                      ||++.+|+++...+.|..++...   +.....+ .....|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i-~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATI-PVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC---CeEEEEE-ECCCCCceEEeC
Confidence            57889999999999999999742   2222222 123468888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=92.55  E-value=9.1  Score=35.83  Aligned_cols=115  Identities=12%  Similarity=0.085  Sum_probs=78.8

Q ss_pred             CCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhh
Q 016199          127 GGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREY  204 (393)
Q Consensus       127 ~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~  204 (393)
                      .+..+-+.|+|+|      ..++... ++.|+.++..| -+-.. ...|.. ..+-++...+||+..++.          
T Consensus        47 ~geI~~~~F~P~g------s~~aSgG~Dr~I~LWnv~gdceN~~-~lkgHs-gAVM~l~~~~d~s~i~S~----------  108 (338)
T KOG0265|consen   47 KGEIYTIKFHPDG------SCFASGGSDRAIVLWNVYGDCENFW-VLKGHS-GAVMELHGMRDGSHILSC----------  108 (338)
T ss_pred             cceEEEEEECCCC------CeEeecCCcceEEEEecccccccee-eecccc-ceeEeeeeccCCCEEEEe----------
Confidence            4567788999999      7766644 45577777555 11111 011222 345578888999888875          


Q ss_pred             eehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          205 ILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       205 ~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                             ....+|..+|..+|+... ......+.|.++....|-.++.+.+..+.+..||...
T Consensus       109 -------gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen  109 -------GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             -------cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence                   334589999999887544 3445667788877777778888888889999999863

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.43  E-value=2.7  Score=40.51  Aligned_cols=102  Identities=9%  Similarity=-0.053  Sum_probs=64.7

Q ss_pred             CCceEEEecC--CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           84 GPEDLLYDAH--SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        84 ~Pe~ia~d~~--g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ++.++.|-+.  ...+.++++-+.+..||+..+.-+  +..+.-.......+...++|     +.+|+|+....+..+|.
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--V~~fd~~E~~is~~~l~p~g-----n~Iy~gn~~g~l~~FD~  276 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--VAQFDFLENPISSTGLTPSG-----NFIYTGNTKGQLAKFDL  276 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcc--eeEeccccCcceeeeecCCC-----cEEEEecccchhheecc
Confidence            4555666554  455778888888888887743211  33443323445677888888     36899988778999998


Q ss_pred             CceEEEeeccCCccccccccEEEcCCCcEEEE
Q 016199          162 NSTVLLTDEAEGQKFKLTDGVDVADDGMIYFT  193 (393)
Q Consensus       162 ~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~t  193 (393)
                      .+...+.....|.. ..+.+|..++.+.+...
T Consensus       277 r~~kl~g~~~kg~t-Gsirsih~hp~~~~las  307 (412)
T KOG3881|consen  277 RGGKLLGCGLKGIT-GSIRSIHCHPTHPVLAS  307 (412)
T ss_pred             cCceeeccccCCcc-CCcceEEEcCCCceEEe
Confidence            76333332233332 34668888888766555

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=92.42  E-value=0.17  Score=28.39  Aligned_cols=16  Identities=25%  Similarity=0.283  Sum_probs=12.6

Q ss_pred             CeEEECCCCCEEEEEe
Q 016199          284 DNIRYDGEGHYLIALA  299 (393)
Q Consensus       284 ~~i~~d~~G~lwva~~  299 (393)
                      ..|..|++|++||++.
T Consensus         8 ~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    8 YSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEE-TTSCEEEEET
T ss_pred             EEEEEcCCcCEEEEeC
Confidence            3578899999999975

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=92.41  E-value=5.2  Score=38.50  Aligned_cols=161  Identities=9%  Similarity=0.122  Sum_probs=103.1

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--------------------c---CCCceeeeEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--------------------N---TGGRPLGIAF  135 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--------------------~---~~~~p~gl~~  135 (393)
                      .|.-..-+++.++++|.++..|+.|..|..|+......+ ..+...                    .   .......+.+
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~-~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w  268 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEED-ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW  268 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccceeeecccCCCccc-cccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence            365566788999999998888888988888872211100 011110                    0   0112456777


Q ss_pred             CCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCc
Q 016199          136 ANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNG  215 (393)
Q Consensus       136 d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g  215 (393)
                      .+.+      .+|-+.+++-|...|............+..   .+.+...+.-++.++-.+                 ..
T Consensus       269 ~d~~------v~yS~SwDHTIk~WDletg~~~~~~~~~ks---l~~i~~~~~~~Ll~~gss-----------------dr  322 (423)
T KOG0313|consen  269 SDAT------VIYSVSWDHTIKVWDLETGGLKSTLTTNKS---LNCISYSPLSKLLASGSS-----------------DR  322 (423)
T ss_pred             cCCC------ceEeecccceEEEEEeecccceeeeecCcc---eeEeecccccceeeecCC-----------------CC
Confidence            7777      889988888888888643111111122222   357777777778777322                 22


Q ss_pred             EEEEEeCCCCeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          216 RLLSFDPVTKETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .+..|||.++.-...    .....+..++..+|-..+.+++.+..+.+-.+|+..
T Consensus       323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            356689987654332    333456788999999999999999999999999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=92.35  E-value=4.6  Score=38.21  Aligned_cols=149  Identities=9%  Similarity=-0.001  Sum_probs=77.4

Q ss_pred             cCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecC--CCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC--Cc--e
Q 016199           92 AHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINT--GGRPLGIAFANSDPDADRITMIVADAYKGLLKISG--NS--T  164 (393)
Q Consensus        92 ~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~--~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~--~g--~  164 (393)
                      |+.. ||..+ .+.-|..|+.-++...-....+.+.  -...+.++|.+||      ..++|...+-|..+|.  -|  -
T Consensus       121 P~t~-l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG------eqlfaGykrcirvFdt~RpGr~c  193 (406)
T KOG2919|consen  121 PSTN-LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG------EQLFAGYKRCIRVFDTSRPGRDC  193 (406)
T ss_pred             Cccc-eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC------CeEeecccceEEEeeccCCCCCC
Confidence            4443 44443 3555777776554411111112111  1235789999999      6555534555666664  23  1


Q ss_pred             EEEe---eccCCccccccccEEEcCCC-cEE-EEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199          165 VLLT---DEAEGQKFKLTDGVDVADDG-MIY-FTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG  239 (393)
Q Consensus       165 ~~l~---~~~~g~~~~~~~~l~~d~dG-~l~-~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng  239 (393)
                      .+..   ....|.. ..+..+++.|-. .++ ++.-+                ..-+||+.|.. +-+..+-..-.....
T Consensus       194 ~vy~t~~~~k~gq~-giisc~a~sP~~~~~~a~gsY~----------------q~~giy~~~~~-~pl~llggh~gGvTh  255 (406)
T KOG2919|consen  194 PVYTTVTKGKFGQK-GIISCFAFSPMDSKTLAVGSYG----------------QRVGIYNDDGR-RPLQLLGGHGGGVTH  255 (406)
T ss_pred             cchhhhhccccccc-ceeeeeeccCCCCcceeeeccc----------------ceeeeEecCCC-CceeeecccCCCeee
Confidence            2221   1112211 123345666643 233 33211                12246665532 223333222334555


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +.+.+||+.+|...+....|..+|+.
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeeh
Confidence            77899999999999989999999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.33  E-value=0.59  Score=44.54  Aligned_cols=147  Identities=13%  Similarity=0.115  Sum_probs=82.8

Q ss_pred             EEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceEEEeCCc-e
Q 016199           88 LLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLLKISGNS-T  164 (393)
Q Consensus        88 ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~~id~~g-~  164 (393)
                      +-+.|-...+..++ .|+.|+.||.....   .++.+ ....++++|++.|++      ..+++ +-+..+|.+|... .
T Consensus       193 vkfNpvETsILas~~sDrsIvLyD~R~~~---Pl~KV-i~~mRTN~IswnPea------fnF~~a~ED~nlY~~DmR~l~  262 (433)
T KOG0268|consen  193 VKFNPVETSILASCASDRSIVLYDLRQAS---PLKKV-ILTMRTNTICWNPEA------FNFVAANEDHNLYTYDMRNLS  262 (433)
T ss_pred             EecCCCcchheeeeccCCceEEEecccCC---cccee-eeeccccceecCccc------cceeeccccccceehhhhhhc
Confidence            44555443344444 58889999987654   12222 235789999999988      55554 4466799888654 1


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcC
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP  244 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~  244 (393)
                      +.+ ....+. .+.+-++++.|.|.=+++-+.               ..+-+||-.+....+-..........-++.++.
T Consensus       263 ~p~-~v~~dh-vsAV~dVdfsptG~Efvsgsy---------------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~  325 (433)
T KOG0268|consen  263 RPL-NVHKDH-VSAVMDVDFSPTGQEFVSGSY---------------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM  325 (433)
T ss_pred             ccc-hhhccc-ceeEEEeccCCCcchhccccc---------------cceEEEeecCCCcchhhhhHhhhheeeEEEEec
Confidence            122 111121 134557888999976666321               123345544432211111122355677888999


Q ss_pred             CCCEEEEEeCCCCeEEEE
Q 016199          245 DQTHLVYCETSMRRCRKF  262 (393)
Q Consensus       245 dg~~l~v~~~~~~ri~~~  262 (393)
                      |.+++ ++++..+.|..|
T Consensus       326 Dskyi-~SGSdd~nvRlW  342 (433)
T KOG0268|consen  326 DSKYI-ISGSDDGNVRLW  342 (433)
T ss_pred             cccEE-EecCCCcceeee
Confidence            98654 666665544443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=92.11  E-value=13  Score=37.77  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=59.3

Q ss_pred             eEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhccc
Q 016199          133 IAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEG  211 (393)
Q Consensus       133 l~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~  211 (393)
                      +..-++|      +|+++. ...+..+|..| .... ...++....+=|++...++|++++..........    .....
T Consensus       153 ~~~l~nG------~ll~~~-~~~~~e~D~~G~v~~~-~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~----~~~~~  220 (477)
T PF05935_consen  153 FKQLPNG------NLLIGS-GNRLYEIDLLGKVIWE-YDLPGGYYDFHHDIDELPNGNLLILASETKYVDE----DKDVD  220 (477)
T ss_dssp             EEE-TTS-------EEEEE-BTEEEEE-TT--EEEE-EE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-T----S-EE-
T ss_pred             eeEcCCC------CEEEec-CCceEEEcCCCCEEEe-eecCCcccccccccEECCCCCEEEEEeecccccC----CCCcc
Confidence            6677899      888885 47899999988 2211 2233322344689999999976654321110000    00001


Q ss_pred             CCCcEEEEEeCCCCeEEEE------e----c------------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEE
Q 016199          212 KPNGRLLSFDPVTKETKVL------V----S------------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFY  263 (393)
Q Consensus       212 ~~~g~l~~~d~~t~~~~~~------~----~------------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~  263 (393)
                      .-...|..+| .+|++.-.      .    .                  +..+.|++.+++..+.|+++.+..+.|++++
T Consensus       221 ~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id  299 (477)
T PF05935_consen  221 TVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID  299 (477)
T ss_dssp             --S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred             EecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence            1223566777 44443321      0    0                  1235688989886678999999999999999


Q ss_pred             ec
Q 016199          264 IK  265 (393)
Q Consensus       264 ~~  265 (393)
                      ..
T Consensus       300 ~~  301 (477)
T PF05935_consen  300 YR  301 (477)
T ss_dssp             -T
T ss_pred             CC
Confidence            53

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.05  E-value=9.9  Score=35.08  Aligned_cols=150  Identities=15%  Similarity=0.188  Sum_probs=84.8

Q ss_pred             cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-C-------------CceeeeEECCCCCCCCceEE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-G-------------GRPLGIAFANSDPDADRITM  147 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~-------------~~p~gl~~d~~G~~~~~~~L  147 (393)
                      .+|+-.+++  +|...|--.....|+++++.++.    +...... +             ..-..+++|.+|       |
T Consensus        69 ~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~----v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-------L  135 (250)
T PF02191_consen   69 WQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRS----VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-------L  135 (250)
T ss_pred             eccCCeEEE--CCcEEEEecCCceEEEEECcCCc----EEEEEECCccccccccceecCCCceEEEEEcCCC-------E
Confidence            456666665  34433433345689999998876    4412111 0             112578899888       8


Q ss_pred             EEEeC---CCc---eEEEeCCce---EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE-E
Q 016199          148 IVADA---YKG---LLKISGNST---VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR-L  217 (393)
Q Consensus       148 ~v~~~---~~g---l~~id~~g~---~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~-l  217 (393)
                      ||--+   ..|   |-++|++.+   +.+.........  .+  ++---|.||+++....              ...+ -
T Consensus       136 WvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~--~n--aFmvCGvLY~~~s~~~--------------~~~~I~  197 (250)
T PF02191_consen  136 WVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSA--GN--AFMVCGVLYATDSYDT--------------RDTEIF  197 (250)
T ss_pred             EEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhh--cc--eeeEeeEEEEEEECCC--------------CCcEEE
Confidence            87622   233   456787762   222222222111  12  3334689999975431              1123 4


Q ss_pred             EEEeCCCCeEEEEec----CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          218 LSFDPVTKETKVLVS----DLYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       218 ~~~d~~t~~~~~~~~----~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      +.||..+++...+.-    ......-+...|..+.||+-+.  +.+..|++
T Consensus       198 yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v  246 (250)
T PF02191_consen  198 YAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV  246 (250)
T ss_pred             EEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence            678988776543321    1233455778888889999875  66777776

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=92.03  E-value=9.4  Score=34.79  Aligned_cols=149  Identities=12%  Similarity=0.087  Sum_probs=84.8

Q ss_pred             EecCCCEEEEEecCCeEEEEEcCCC---CC--cceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC-
Q 016199           90 YDAHSKLIYTGCEDGWIKRVTLNDS---PA--DSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG-  161 (393)
Q Consensus        90 ~d~~g~~L~~~~~~g~I~~~~~~~~---~~--~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~-  161 (393)
                      ++|-++.|++|+..|.|..+.++.-   ..  +.....+.  ...+..+.++|. +.      .|+.| ..+-++-+.- 
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~------~Lls~-gdG~V~gw~W~   89 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DD------FLLSG-GDGLVYGWEWN   89 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hh------heeec-cCceEEEeeeh
Confidence            5677778888888998877766431   10  00011111  123445677776 33      45555 3332333321 


Q ss_pred             -----CceEE-E----eeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          162 -----NSTVL-L----TDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       162 -----~g~~~-l----~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                           .+.+. +    ....+..+..-+|.+..|| +|.++++                  .+.+-+|.+|.++|+++..
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A------------------gGD~~~y~~dlE~G~i~r~  151 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA------------------GGDGVIYQVDLEDGRIQRE  151 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe------------------cCCeEEEEEEecCCEEEEE
Confidence                 11111 1    1112223345578999997 5678877                  4567899999999998876


Q ss_pred             ecC-ccCCCcEEE-cCCCCEEEEEeCCCCeEEEEEecC
Q 016199          231 VSD-LYFANGVVL-SPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       231 ~~~-l~~~ngi~~-s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .++ ..+.+.+.. ...++  +++....+.+..++.+.
T Consensus       152 ~rGHtDYvH~vv~R~~~~q--ilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQ--ILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             EcCCcceeeeeeecccCcc--eeecCCCccEEEEeccc
Confidence            554 345566654 33343  35666678888888753

>PRK13616 lipoprotein LpqB; Provisional

Probab=91.79  E-value=19  Score=37.72  Aligned_cols=156  Identities=9%  Similarity=0.030  Sum_probs=81.0

Q ss_pred             cCCCceEEEecCCCEE-EEEe-----cC--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199           82 LKGPEDLLYDAHSKLI-YTGC-----ED--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY  153 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L-~~~~-----~~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~  153 (393)
                      ...+.+++++++|+.+ |+..     .+  ..|+..+..+.     ...+.. +..-..-.++++|     ..||+....
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----~~~lt~-g~~~t~PsWspDG-----~~lw~v~dg  417 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----AVQVLE-GHSLTRPSWSLDA-----DAVWVVVDG  417 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----ceeeec-CCCCCCceECCCC-----CceEEEecC
Confidence            3466788999999854 4432     12  25666664332     222221 2223456678885     268877433


Q ss_pred             CceEEEe-CCc-eEEEeeccCCcc-----ccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEE---EeC
Q 016199          154 KGLLKIS-GNS-TVLLTDEAEGQK-----FKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLS---FDP  222 (393)
Q Consensus       154 ~gl~~id-~~g-~~~l~~~~~g~~-----~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~---~d~  222 (393)
                      ..+.++. .++ .+......++..     -..+..+.+++|| +|.|..                   .++|+.   ...
T Consensus       418 ~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~  478 (591)
T PRK13616        418 NTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-------------------GGKVYLAVVEQT  478 (591)
T ss_pred             cceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeC
Confidence            2344332 222 111111111110     1236788999999 566652                   124444   333


Q ss_pred             CCCeEEE-----EecCccC-CCcEEEcCCCCEEEEEeC-CCCeEEEEEecCCC
Q 016199          223 VTKETKV-----LVSDLYF-ANGVVLSPDQTHLVYCET-SMRRCRKFYIKGKN  268 (393)
Q Consensus       223 ~t~~~~~-----~~~~l~~-~ngi~~s~dg~~l~v~~~-~~~ri~~~~~~g~~  268 (393)
                      ..|+.+.     +...+.. +..+.+..|+. |++... ....++++.++|..
T Consensus       479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             CCCceeecccEEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence            3444332     3334443 57788988886 555443 34568888888763

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=91.69  E-value=0.84  Score=28.86  Aligned_cols=36  Identities=19%  Similarity=0.051  Sum_probs=28.0

Q ss_pred             cCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCC
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDS  114 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~  114 (393)
                      ...+..|.++++|+.++.||+.+. .+.|.+.+.++.
T Consensus         5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            445789999999999888886654 567888887653

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.49  E-value=15  Score=36.18  Aligned_cols=163  Identities=19%  Similarity=0.184  Sum_probs=84.1

Q ss_pred             ccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC--CCcEEEcCCCCEEEEEeCCC
Q 016199          180 DGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF--ANGVVLSPDQTHLVYCETSM  256 (393)
Q Consensus       180 ~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~--~ngi~~s~dg~~l~v~~~~~  256 (393)
                      ..+.+++||+ +.++-.             ..|+..-.|+.+|.++|+...  +.+..  ..++++.+|++.+|.+....
T Consensus       127 ~~~~~Spdg~~la~~~s-------------~~G~e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~  191 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLS-------------DGGSEWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDE  191 (414)
T ss_dssp             EEEEETTTSSEEEEEEE-------------ETTSSEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECST
T ss_pred             eeeeECCCCCEEEEEec-------------CCCCceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCc
Confidence            4567888885 334411             112233468999999886532  22222  23399999998887776443


Q ss_pred             ----------CeEEEEEecCCCCcceeeeeccCCCC-CCeEEECCCCCEEEE-EecCcchhhhhhhcCcchhhhhhhhhh
Q 016199          257 ----------RRCRKFYIKGKNAGRVEKFIETLPGL-PDNIRYDGEGHYLIA-LATEFSTYWDLAYRYPFIRKVSGMVVR  324 (393)
Q Consensus       257 ----------~ri~~~~~~g~~~~~~~~~~~~l~g~-P~~i~~d~~G~lwva-~~~~r~~~~~~~~~~~~~r~~~~~~~~  324 (393)
                                .+|+++.+.........+|-+..+.+ --++..+.||++.+- .....+                     
T Consensus       192 ~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---------------------  250 (414)
T PF02897_consen  192 DQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS---------------------  250 (414)
T ss_dssp             TTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS---------------------
T ss_pred             ccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc---------------------
Confidence                      24777776433221123333222222 235677889986543 332211                     


Q ss_pred             hhCCCCCCCCCceEEEECCCCc-----EEEEeeCCCCCccEEEEEeCCEEEEEecC---CCeEEEEeCCCCC
Q 016199          325 YLGMPPMGKSSSGVFIVDLDGK-----PIAHYYDPEMSLISSAIKIGDHLYCGSVH---HRGILHLDVNQHP  388 (393)
Q Consensus       325 ~~~~~~~~~~~~~v~~~d~~g~-----~~~~~~d~~~~~~~~~~~~~g~Lyigs~~---~~~i~~~~~~~~~  388 (393)
                                ...++.++.+..     ....+..+.......+...++.+|+-+..   ...|.+++++...
T Consensus       251 ----------~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  251 ----------ESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             ----------EEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             ----------CCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence                      134666665432     33344333222333444457888876543   2477778876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.30  E-value=13  Score=34.95  Aligned_cols=172  Identities=19%  Similarity=0.232  Sum_probs=92.6

Q ss_pred             EEEEEeCCCceEEEeCCc---eEEEee-ccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199          146 TMIVADAYKGLLKISGNS---TVLLTD-EAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSF  220 (393)
Q Consensus       146 ~L~v~~~~~gl~~id~~g---~~~l~~-~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~  220 (393)
                      ..|++++..||..+|-..   .+++.. ...|.    ..++.+  .| ..|++|.                  +.+++.+
T Consensus        98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy----aygv~v--sGn~aYVadl------------------ddgfLiv  153 (370)
T COG5276          98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY----AYGVYV--SGNYAYVADL------------------DDGFLIV  153 (370)
T ss_pred             EEEEEcCCCceEEEeccCCCCcceeccccCCce----EEEEEe--cCCEEEEeec------------------cCcEEEE
Confidence            799999999999998544   122211 11121    123333  34 6888862                  3368888


Q ss_pred             eCCCCeEEEEecCccCC----CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCE
Q 016199          221 DPVTKETKVLVSDLYFA----NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHY  294 (393)
Q Consensus       221 d~~t~~~~~~~~~l~~~----ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~l  294 (393)
                      |..+-..-.++.....+    ..++++  |+.-|++.. ++++...|+..+..   .+|+..  ..+...++.+. +.+.
T Consensus       154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp~s---Pvli~~~n~g~g~~sv~vs-dnr~  226 (370)
T COG5276         154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNPHS---PVLIGSYNTGPGTYSVSVS-DNRA  226 (370)
T ss_pred             ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCCCC---CeEEEEEecCCceEEEEec-CCee
Confidence            86544433333333333    446666  557888875 57788889875421   223221  11122334443 3445


Q ss_pred             EEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCc----EEEEeeCCCCCccEEEEEeCCEEE
Q 016199          295 LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGK----PIAHYYDPEMSLISSAIKIGDHLY  370 (393)
Q Consensus       295 wva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~----~~~~~~d~~~~~~~~~~~~~g~Ly  370 (393)
                      |++...                                   .+++.+|.++.    ++-++.......++.+...+.+.|
T Consensus       227 y~vvy~-----------------------------------egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Y  271 (370)
T COG5276         227 YLVVYD-----------------------------------EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAY  271 (370)
T ss_pred             EEEEcc-----------------------------------cceEEEecCCCCCceEeeccccCCcccccceecccceee
Confidence            554442                                   25666766553    333444333334445566778888


Q ss_pred             EEecCCCeEEEEeC
Q 016199          371 CGSVHHRGILHLDV  384 (393)
Q Consensus       371 igs~~~~~i~~~~~  384 (393)
                      +.- .+.++..+|.
T Consensus       272 vad-ga~gl~~idi  284 (370)
T COG5276         272 VAD-GAKGLPIIDI  284 (370)
T ss_pred             eec-cccCceeEec
Confidence            874 3445666554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=91.20  E-value=1.8  Score=44.34  Aligned_cols=146  Identities=15%  Similarity=0.071  Sum_probs=78.2

Q ss_pred             EEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCCc-eEEEeeccCCc
Q 016199           97 IYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKISGNS-TVLLTDEAEGQ  174 (393)
Q Consensus        97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g-~~~l~~~~~g~  174 (393)
                      |-+++.|-.|..||......   ...+....+...+++..++|      +....-.. +.|..+++.. .+.+. +-.|.
T Consensus       693 La~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdG------r~~AtVcKDg~~rVy~Prs~e~pv~-Eg~gp  762 (1012)
T KOG1445|consen  693 LAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDG------RRIATVCKDGTLRVYEPRSREQPVY-EGKGP  762 (1012)
T ss_pred             hhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCC------cceeeeecCceEEEeCCCCCCCccc-cCCCC
Confidence            34455666777777765331   22233345678999999999      66554443 4466677654 32332 11111


Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE----ecCccCCCcEEEcCCCCEEE
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL----VSDLYFANGVVLSPDQTHLV  250 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~----~~~l~~~ngi~~s~dg~~l~  250 (393)
                      ....---|.+.-||++.+...-.+             ...-.|..||..+-....+    ++--..+---.+++|...++
T Consensus       763 vgtRgARi~wacdgr~viv~Gfdk-------------~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lf  829 (1012)
T KOG1445|consen  763 VGTRGARILWACDGRIVIVVGFDK-------------SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLF  829 (1012)
T ss_pred             ccCcceeEEEEecCcEEEEecccc-------------cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEE
Confidence            111112456666787666532111             1222356666543221111    11111122223567888999


Q ss_pred             EEeCCCCeEEEEEec
Q 016199          251 YCETSMRRCRKFYIK  265 (393)
Q Consensus       251 v~~~~~~ri~~~~~~  265 (393)
                      ++.-+..+|+.|.+-
T Consensus       830 ltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  830 LTGKGDRFVNMYEVI  844 (1012)
T ss_pred             EecCCCceEEEEEec
Confidence            999999999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=91.19  E-value=7.8  Score=37.95  Aligned_cols=173  Identities=14%  Similarity=0.103  Sum_probs=93.9

Q ss_pred             ccCcccccccCceEEecCccCCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCc-c---eeeeeecCCCceeeeEECC
Q 016199           63 AALRNERMLQGSEKVGYGVLKGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPAD-S---LVHNWINTGGRPLGIAFAN  137 (393)
Q Consensus        63 ~~~~~~~~l~~~~~l~~g~~~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~-~---~~~~~~~~~~~p~gl~~d~  137 (393)
                      |.+.|+-+|..-+.-       -.++.|..... +|..++.++.|..|+.+....+ +   ....+.........+++.+
T Consensus       165 ~~~~Pdl~L~gH~~e-------g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~  237 (422)
T KOG0264|consen  165 GECRPDLRLKGHEKE-------GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP  237 (422)
T ss_pred             ccCCCceEEEeeccc-------ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc
Confidence            345556666554442       22355665332 4667777889999988754311 0   0111211223345555554


Q ss_pred             CCCCCCceEEEEEeCCCc-eEEEeCCc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCC
Q 016199          138 SDPDADRITMIVADAYKG-LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPN  214 (393)
Q Consensus       138 ~G~~~~~~~L~v~~~~~g-l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~  214 (393)
                      ..     +.|+..-.+.+ +...|... ........... -.-+|.+++.|-+ .|..+ .                +..
T Consensus       238 ~h-----~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah-~~~vn~~~fnp~~~~ilAT-~----------------S~D  294 (422)
T KOG0264|consen  238 LH-----EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH-SAEVNCVAFNPFNEFILAT-G----------------SAD  294 (422)
T ss_pred             cc-----hhhheeecCCCeEEEEEcCCCCCCCccccccc-CCceeEEEeCCCCCceEEe-c----------------cCC
Confidence            33     14555444444 44555431 00000011111 1235688888855 55544 2                345


Q ss_pred             cEEEEEeCCCCe--EEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          215 GRLLSFDPVTKE--TKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       215 g~l~~~d~~t~~--~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      ++|.-||+..=.  +..+...-.....|.++|+.+.++.+....+|+..||+.
T Consensus       295 ~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  295 KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             CcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            678888875322  222222223356788999999999999899999999996

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.19  E-value=11  Score=39.18  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=88.6

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC---ceeeeEECCCCCCCCc-eEEEEEeCCCceEEEeCC
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG---RPLGIAFANSDPDADR-ITMIVADAYKGLLKISGN  162 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~---~p~gl~~d~~G~~~~~-~~L~v~~~~~gl~~id~~  162 (393)
                      +.+|..||+.+-+|..+|.|-.-+..+..    .-.+..+++   ..-++++.++- -.++ +.+-|.|+...+-.+..+
T Consensus       137 ~CsWtnDGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~p~s-g~G~~di~aV~DW~qTLSFy~Ls  211 (1081)
T KOG1538|consen  137 CCSWTNDGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWNPSS-GEGRNDILAVADWGQTLSFYQLS  211 (1081)
T ss_pred             EeeecCCCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEecCCC-CCCccceEEEEeccceeEEEEec
Confidence            46788999988888889987655544332    112222221   23577776531 0122 256777887777777777


Q ss_pred             ceEEEeeccCCcccc-ccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          163 STVLLTDEAEGQKFK-LTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       163 g~~~l~~~~~g~~~~-~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                      |. .+..   ...+. -|..+..=++| .+.++                  ..++.+..|..++-.+-++.+.-.....+
T Consensus       212 G~-~Igk---~r~L~FdP~CisYf~NGEy~LiG------------------Gsdk~L~~fTR~GvrLGTvg~~D~WIWtV  269 (1081)
T KOG1538|consen  212 GK-QIGK---DRALNFDPCCISYFTNGEYILLG------------------GSDKQLSLFTRDGVRLGTVGEQDSWIWTV  269 (1081)
T ss_pred             ce-eecc---cccCCCCchhheeccCCcEEEEc------------------cCCCceEEEeecCeEEeeccccceeEEEE
Confidence            61 1110   01111 14455555677 44454                  44566777777654555555545567788


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      ++.|+++.+ +..+-.++|-+|++-
T Consensus       270 ~~~PNsQ~v-~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  270 QAKPNSQYV-VVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEccCCceE-EEEEccCeeehhhhH
Confidence            899998654 556678889888864

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.18  E-value=11  Score=36.49  Aligned_cols=85  Identities=11%  Similarity=0.154  Sum_probs=55.8

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccCC-CcEEEcCCCCEEEEEeCC----CCeEEEEEecCCCCcceeeeeccCCCCCC-e
Q 016199          212 KPNGRLLSFDPVTKETKVLVSDLYFA-NGVVLSPDQTHLVYCETS----MRRCRKFYIKGKNAGRVEKFIETLPGLPD-N  285 (393)
Q Consensus       212 ~~~g~l~~~d~~t~~~~~~~~~l~~~-ngi~~s~dg~~l~v~~~~----~~ri~~~~~~g~~~~~~~~~~~~l~g~P~-~  285 (393)
                      .+-..|+.++..++..+.+..+-... .-+.++++++.+|+..+.    ...|++.+++  ..+..+.+. ... ... .
T Consensus       257 ~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~--~~~~~~~LT-~~~-~~~~~  332 (353)
T PF00930_consen  257 DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD--SGGEPKCLT-CED-GDHYS  332 (353)
T ss_dssp             TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT--ETTEEEESS-TTS-STTEE
T ss_pred             CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC--CCCCeEecc-CCC-CCceE
Confidence            45668999999988877665554333 346788999999998876    3478888876  123334333 222 233 6


Q ss_pred             EEECCCCCEEEEEec
Q 016199          286 IRYDGEGHYLIALAT  300 (393)
Q Consensus       286 i~~d~~G~lwva~~~  300 (393)
                      +.++++|++++-...
T Consensus       333 ~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  333 ASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEE-TTSSEEEEEEE
T ss_pred             EEECCCCCEEEEEEc
Confidence            889999998886653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.16  E-value=21  Score=37.17  Aligned_cols=209  Identities=14%  Similarity=0.104  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCCcceeeeeecCC--CceeeeEECCCCCCCCceEEEEEeCCC-c------eEEEeCCceEEEeeccCCcc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTG--GRPLGIAFANSDPDADRITMIVADAYK-G------LLKISGNSTVLLTDEAEGQK  175 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~--~~p~gl~~d~~G~~~~~~~L~v~~~~~-g------l~~id~~g~~~l~~~~~g~~  175 (393)
                      .+..|++..+.    +.......  ..-.++++- +|      .||+..... |      +.++|+...+ +.....-..
T Consensus       302 ~ve~yd~~~~~----w~~~a~m~~~r~~~~~~~~-~~------~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~  369 (571)
T KOG4441|consen  302 SVECYDPKTNE----WSSLAPMPSPRCRVGVAVL-NG------KLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNT  369 (571)
T ss_pred             eeEEecCCcCc----EeecCCCCcccccccEEEE-CC------EEEEEccccCCCcccceEEEecCCCCc-eeccCCccC
Confidence            46677777654    44443321  112455554 56      899886655 3      5667775511 111000000


Q ss_pred             ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc--CCCcEEEcCCCCEEEEEe
Q 016199          176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY--FANGVVLSPDQTHLVYCE  253 (393)
Q Consensus       176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~--~~ngi~~s~dg~~l~v~~  253 (393)
                      -+.-.++++ -+|.||+.-...            .......+-+|||.+.+.+.+..-..  .-.|++. -+| .||+..
T Consensus       370 ~R~~~~v~~-l~g~iYavGG~d------------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-~~g-~iYi~G  434 (571)
T KOG4441|consen  370 KRSDFGVAV-LDGKLYAVGGFD------------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-LGG-KLYIIG  434 (571)
T ss_pred             ccccceeEE-ECCEEEEEeccc------------cccccccEEEecCCCCcccccCCCCcceeeeEEEE-ECC-EEEEEc
Confidence            112223332 267888763211            11223468999999998887654322  2233333 244 688876


Q ss_pred             CC------CCeEEEEEecCCCCcceeeeeccCC--CCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhh
Q 016199          254 TS------MRRCRKFYIKGKNAGRVEKFIETLP--GLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRY  325 (393)
Q Consensus       254 ~~------~~ri~~~~~~g~~~~~~~~~~~~l~--g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~  325 (393)
                      -.      -..+.+||+..++   -+... ..+  ..--+++.- +|.+|+.......                      
T Consensus       435 G~~~~~~~l~sve~YDP~t~~---W~~~~-~M~~~R~~~g~a~~-~~~iYvvGG~~~~----------------------  487 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNT---WTLIA-PMNTRRSGFGVAVL-NGKIYVVGGFDGT----------------------  487 (571)
T ss_pred             CcCCCccccceEEEEcCCCCc---eeecC-CcccccccceEEEE-CCEEEEECCccCC----------------------
Confidence            52      2467888875432   11111 111  011234433 5677765332110                      


Q ss_pred             hCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEEEec
Q 016199          326 LGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYCGSV  374 (393)
Q Consensus       326 ~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~  374 (393)
                             .....|-++|+..........-. ......+...++.||+-+-
T Consensus       488 -------~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG  530 (571)
T KOG4441|consen  488 -------SALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG  530 (571)
T ss_pred             -------CccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence                   01124888999877666654322 2333445667888887653

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=91.08  E-value=0.88  Score=29.35  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=30.2

Q ss_pred             EEEEEeCCCC-eEEEEEecCCCCcceeeeeccCCCCCCeEEECC
Q 016199          248 HLVYCETSMR-RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG  290 (393)
Q Consensus       248 ~l~v~~~~~~-ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~  290 (393)
                      .+||++.... +|.+-+++|..   .++++...-..|.+|++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence            6999999999 99999998753   3444434344799999873

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=90.87  E-value=16  Score=35.17  Aligned_cols=51  Identities=8%  Similarity=0.173  Sum_probs=29.6

Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       248 ~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      .+.++.+....|-.+++..   +..-.-+.+....-.++++.+.|+|.+++...
T Consensus       305 ~~l~s~SrDktIk~wdv~t---g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD  355 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVST---GMCLFTLVGHDNWVRGVAFSPGGKYILSCADD  355 (406)
T ss_pred             cEEEeecccceEEEEeccC---CeEEEEEecccceeeeeEEcCCCeEEEEEecC
Confidence            4556666566666666642   22111111222235678899999999888755

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=90.64  E-value=14  Score=34.05  Aligned_cols=104  Identities=14%  Similarity=0.239  Sum_probs=58.4

Q ss_pred             cEEEEEeCCCCeEEEEecC-------ccCCCcEEEcCCC---CEEEEEeCCCCeEEEEEecCCCCcc-----eeeeeccC
Q 016199          215 GRLLSFDPVTKETKVLVSD-------LYFANGVVLSPDQ---THLVYCETSMRRCRKFYIKGKNAGR-----VEKFIETL  279 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~~~-------l~~~ngi~~s~dg---~~l~v~~~~~~ri~~~~~~g~~~~~-----~~~~~~~l  279 (393)
                      -.+|.+||+++.++.+.+.       +..+.|+++..+.   .+-.+...-.+-+..|.+-....+.     .+.|  .+
T Consensus       126 i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f--k~  203 (364)
T COG4247         126 IVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF--KI  203 (364)
T ss_pred             EEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee--ec
Confidence            3578889988877776543       5678899987653   3333334445778788774221121     2223  23


Q ss_pred             CCCCCeEEEC-CCCCEEEEEecCcchhhhhhhc--Ccchhhhhhhh
Q 016199          280 PGLPDNIRYD-GEGHYLIALATEFSTYWDLAYR--YPFIRKVSGMV  322 (393)
Q Consensus       280 ~g~P~~i~~d-~~G~lwva~~~~r~~~~~~~~~--~~~~r~~~~~~  322 (393)
                      +..-.|+..| .-|.+||+.-..  .+|.+-++  ..--++++.++
T Consensus       204 ~tQTEG~VaDdEtG~LYIaeEdv--aiWK~~Aep~~G~~g~~idr~  247 (364)
T COG4247         204 PTQTEGMVADDETGFLYIAEEDV--AIWKYEAEPNRGNTGRLIDRI  247 (364)
T ss_pred             CCcccceeeccccceEEEeeccc--eeeecccCCCCCCccchhhhh
Confidence            4445666654 458899986432  33433322  23444554443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.49  E-value=3.3  Score=45.02  Aligned_cols=153  Identities=18%  Similarity=0.186  Sum_probs=78.7

Q ss_pred             EEEecCCCE----EEEEecCCeEEEEEcCCC-CCc--ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEE
Q 016199           88 LLYDAHSKL----IYTGCEDGWIKRVTLNDS-PAD--SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKI  159 (393)
Q Consensus        88 ia~d~~g~~----L~~~~~~g~I~~~~~~~~-~~~--~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~i  159 (393)
                      ++|.+.|..    |--|..||.|..|++..- .+.  ..+.......+...|+.|.+.+.     ++....+. +-|+.+
T Consensus        70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~-----nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG-----NLLASGADDGEILIW  144 (1049)
T ss_pred             eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC-----ceeeccCCCCcEEEe
Confidence            445554443    545567999999998752 110  11222223456789999998761     35444333 448888


Q ss_pred             eCCc-eEEEeeccCCc-cccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC---
Q 016199          160 SGNS-TVLLTDEAEGQ-KFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD---  233 (393)
Q Consensus       160 d~~g-~~~l~~~~~g~-~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~---  233 (393)
                      |.+. .+...  ..+. ....+..+.....- .|+.                 .+..+|+...+|...++...-...   
T Consensus       145 Dlnn~~tP~~--~~~~~~~~eI~~lsWNrkvqhILA-----------------S~s~sg~~~iWDlr~~~pii~ls~~~~  205 (1049)
T KOG0307|consen  145 DLNKPETPFT--PGSQAPPSEIKCLSWNRKVSHILA-----------------SGSPSGRAVIWDLRKKKPIIKLSDTPG  205 (1049)
T ss_pred             ccCCcCCCCC--CCCCCCcccceEeccchhhhHHhh-----------------ccCCCCCceeccccCCCcccccccCCC
Confidence            8765 21111  1111 01112222222211 2322                 235567888888865432211111   


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCC---eEEEEEe
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMR---RCRKFYI  264 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~---ri~~~~~  264 (393)
                      -..-++++++||.-.-++..+...   .|..+|+
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl  239 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL  239 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence            123468999999875555544444   4556665

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.42  E-value=26  Score=36.95  Aligned_cols=178  Identities=13%  Similarity=0.114  Sum_probs=94.9

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc---
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS---  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g---  163 (393)
                      +...++.-+|-+|..||-|..|+...+.   ..-.+........-|.+|..|      ..++... +.-|..+|.=+   
T Consensus        71 l~~~~d~l~lAVGYaDGsVqif~~~s~~---~~~tfngHK~AVt~l~fd~~G------~rlaSGskDt~IIvwDlV~E~G  141 (888)
T KOG0306|consen   71 LRSSDDILLLAVGYADGSVQIFSLESEE---ILITFNGHKAAVTTLKFDKIG------TRLASGSKDTDIIVWDLVGEEG  141 (888)
T ss_pred             eeccCCcceEEEEecCceEEeeccCCCc---eeeeecccccceEEEEEcccC------ceEeecCCCccEEEEEecccee
Confidence            4444555456789999988888866442   011221123456778899988      5544433 44577777433   


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEEE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVVL  242 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~  242 (393)
                      .-.+    .|.. ..+...-+-.+..+.++.                 ...+.+-.+|.++... .+..+.-....++++
T Consensus       142 l~rL----~GHk-d~iT~~~F~~~~~~lvS~-----------------sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~  199 (888)
T KOG0306|consen  142 LFRL----RGHK-DSITQALFLNGDSFLVSV-----------------SKDSMIKFWDLETQHCFETHVDHRGEIWALVL  199 (888)
T ss_pred             eEEe----ecch-HHHhHHhccCCCeEEEEe-----------------ccCceEEEEecccceeeeEEecccceEEEEEE
Confidence            1122    1211 112222233334555653                 2223455567766542 334444455677877


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecC--CC--------CcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKG--KN--------AGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g--~~--------~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++   .+.++....+.+..|++.-  +.        ....-.+..+-.+.+.+++.|.++++.+.-.
T Consensus       200 ~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g  263 (888)
T KOG0306|consen  200 DE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG  263 (888)
T ss_pred             ec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence            76   2455555666676776621  11        1112234434456788899999998666543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=90.33  E-value=8.3  Score=37.34  Aligned_cols=154  Identities=16%  Similarity=0.208  Sum_probs=88.2

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCC-CcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP-ADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~-~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      .|..+...++++.+++++.+.+.+.++..... +.+....+ ....+|..+.+..+.     ....|++..+-.+.++--
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~-----~sv~v~dkagD~~~~di~  137 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIRED-----TSVLVADKAGDVYSFDIL  137 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeecc-----ceEEEEeecCCceeeeee
Confidence            44456677788877788777665444433321 11111211 234567788776644     156777665556665421


Q ss_pred             ----c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccC
Q 016199          163 ----S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYF  236 (393)
Q Consensus       163 ----g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~  236 (393)
                          + .+.+    -|. .....+|++.+|+...++.-               ....-++.+|.. +..+..+ ...-.|
T Consensus       138 s~~~~~~~~~----lGh-vSml~dVavS~D~~~IitaD---------------RDEkIRvs~ypa-~f~IesfclGH~eF  196 (390)
T KOG3914|consen  138 SADSGRCEPI----LGH-VSMLLDVAVSPDDQFIITAD---------------RDEKIRVSRYPA-TFVIESFCLGHKEF  196 (390)
T ss_pred             cccccCcchh----hhh-hhhhheeeecCCCCEEEEec---------------CCceEEEEecCc-ccchhhhccccHhh
Confidence                2 1111    111 23456899999997666631               123345666643 3444333 223467


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ...+++.++  ..+++..+.+.|+.|++..
T Consensus       197 VS~isl~~~--~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  197 VSTISLTDN--YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             eeeeeeccC--ceeeecCCCCcEEEEeccc
Confidence            788888755  3578889999999999863

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.12  E-value=20  Score=37.03  Aligned_cols=188  Identities=15%  Similarity=0.131  Sum_probs=95.9

Q ss_pred             CCceEEE-ecCCCEEEEE-ecCCeEEEEEcCCCCCcceeeeee-----cCC----CceeeeEECCCCCCCCceEEEEEeC
Q 016199           84 GPEDLLY-DAHSKLIYTG-CEDGWIKRVTLNDSPADSLVHNWI-----NTG----GRPLGIAFANSDPDADRITMIVADA  152 (393)
Q Consensus        84 ~Pe~ia~-d~~g~~L~~~-~~~g~I~~~~~~~~~~~~~~~~~~-----~~~----~~p~gl~~d~~G~~~~~~~L~v~~~  152 (393)
                      .--++++ .++.. ++++ .-|++|..|+.+.+... .+..+.     ...    ...+.++..+.|      .++|+..
T Consensus       119 YVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~-l~~s~n~~t~~sl~sG~k~siYSLA~N~t~------t~ivsGg  190 (735)
T KOG0308|consen  119 YVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTAT-LVASFNNVTVNSLGSGPKDSIYSLAMNQTG------TIIVSGG  190 (735)
T ss_pred             hheeeeecccCce-eEEecCCCccEEEEEccCcchh-hhhhccccccccCCCCCccceeeeecCCcc------eEEEecC
Confidence            3445666 45544 5443 44889999999866310 011111     011    234778888888      8888754


Q ss_pred             CCc-eEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-EEE
Q 016199          153 YKG-LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-TKV  229 (393)
Q Consensus       153 ~~g-l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~~~  229 (393)
                      -.+ |..+|+.. .+...  ..|.. ..+..+.+++||+-.++.                 +..|.|-.+|....+ +.+
T Consensus       191 tek~lr~wDprt~~kimk--LrGHT-dNVr~ll~~dDGt~~ls~-----------------sSDgtIrlWdLgqQrCl~T  250 (735)
T KOG0308|consen  191 TEKDLRLWDPRTCKKIMK--LRGHT-DNVRVLLVNDDGTRLLSA-----------------SSDGTIRLWDLGQQRCLAT  250 (735)
T ss_pred             cccceEEeccccccceee--eeccc-cceEEEEEcCCCCeEeec-----------------CCCceEEeeeccccceeee
Confidence            444 55568765 32221  11221 235578899999666663                 334555556653221 111


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r  302 (393)
                      +.-.-.....+..+++-..+|..++ .+.|++-++... ......+.+..|-.--....+ +..+|+++..+.
T Consensus       251 ~~vH~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~-~~~tlick~daPv~~l~~~~~-~~~~WvtTtds~  320 (735)
T KOG0308|consen  251 YIVHKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNP-AKSTLICKEDAPVLKLHLHEH-DNSVWVTTTDSS  320 (735)
T ss_pred             EEeccCceEEEeeCCCcceEEecCC-CCcEEecccCCc-hhheEeecCCCchhhhhhccc-cCCceeeecccc
Confidence            2111111344555566667777665 567888887643 122233332222111112222 233688877653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=90.09  E-value=19  Score=34.93  Aligned_cols=188  Identities=7%  Similarity=0.087  Sum_probs=96.3

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCC---Ccceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSP---ADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~---~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      .|-|+.+++.|..|..+-++..|+.+.--   ..+-+....+ .......++|+..+     ..+|-+.....+...|..
T Consensus        61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-----~~~~SG~~~~~VI~HDiE  135 (609)
T KOG4227|consen   61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-----RFLYSGERWGTVIKHDIE  135 (609)
T ss_pred             eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-----eeEecCCCcceeEeeecc
Confidence            46688888755555455567777665321   0000111111 12345789998765     145666445556666655


Q ss_pred             c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe----EEEEecCccCC
Q 016199          163 S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE----TKVLVSDLYFA  237 (393)
Q Consensus       163 g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~----~~~~~~~l~~~  237 (393)
                      . .++....-+. .-..+.++.+.|-.++++..                 +..++|..+|.....    .-.++..-..-
T Consensus       136 t~qsi~V~~~~~-~~~~VY~m~~~P~DN~~~~~-----------------t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  136 TKQSIYVANENN-NRGDVYHMDQHPTDNTLIVV-----------------TRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             cceeeeeecccC-cccceeecccCCCCceEEEE-----------------ecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            5 2222111111 11235577788866665553                 345678888754322    22222222223


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCCC------eEEECCCCCEEEEEec
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLPGLPD------NIRYDGEGHYLIALAT  300 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~g~P~------~i~~d~~G~lwva~~~  300 (393)
                      +.+.|.|..-.|+.+....+++-.|+...+.   ..++. ....++|.      ++.+.++|+-+++...
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~---~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR  264 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQA---RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR  264 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeecccc---chHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence            4566777766677777777888888874321   11111 01123333      3566777777776553

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=90.00  E-value=1.2  Score=28.63  Aligned_cols=41  Identities=22%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcC
Q 016199          188 GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSP  244 (393)
Q Consensus       188 G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~  244 (393)
                      |+||++|.+.+                -.+.+-+.++...+. +..++..|+||++++
T Consensus         1 ~~iYWtD~~~~----------------~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQD----------------PSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTT----------------EEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCC----------------cEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            57899985431                268888877665444 456789999999864

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=89.92  E-value=13  Score=35.88  Aligned_cols=143  Identities=11%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             CceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe-C
Q 016199           85 PEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS-G  161 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id-~  161 (393)
                      -.+|.+.+||..|..++. +..|..|+++++.    -..... ..++..-+.+.|||      ..+++..-.+++++= .
T Consensus       198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~----~~pL~~~glgg~slLkwSPdg------d~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ----KIPLIPKGLGGFSLLKWSPDG------DVLFAATCDAVFRLWQE  267 (445)
T ss_pred             eeEEEEcCCCCEEeecccCcceEEEEcCCCCC----cccccccCCCceeeEEEcCCC------CEEEEecccceeeeehh
Confidence            356889999986666655 4578889998775    222221 12345567899999      777776767777663 2


Q ss_pred             C-c--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-----------e
Q 016199          162 N-S--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-----------E  226 (393)
Q Consensus       162 ~-g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-----------~  226 (393)
                      . .  .+.... ..|    .+..-..+|+| .|.|+.+++                 -+||+..-..+           +
T Consensus       268 ~q~wt~erw~l-gsg----rvqtacWspcGsfLLf~~sgs-----------------p~lysl~f~~~~~~~~~~~~~k~  325 (445)
T KOG2139|consen  268 NQSWTKERWIL-GSG----RVQTACWSPCGSFLLFACSGS-----------------PRLYSLTFDGEDSVFLRPQSIKR  325 (445)
T ss_pred             cccceecceec-cCC----ceeeeeecCCCCEEEEEEcCC-----------------ceEEEEeecCCCccccCccccee
Confidence            2 1  111111 111    34455789999 566765332                 23444322111           1


Q ss_pred             EEEEec--------C----ccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199          227 TKVLVS--------D----LYFANGVVLSPDQTHLVYCETSMRRC  259 (393)
Q Consensus       227 ~~~~~~--------~----l~~~ngi~~s~dg~~l~v~~~~~~ri  259 (393)
                      ....++        +    -..+..++++|.|+++.|.--...+|
T Consensus       326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v  370 (445)
T KOG2139|consen  326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFV  370 (445)
T ss_pred             eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchh
Confidence            111111        1    23567899999999888776655543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=89.41  E-value=11  Score=39.05  Aligned_cols=144  Identities=14%  Similarity=0.098  Sum_probs=76.8

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEE
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLL  167 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l  167 (393)
                      ++.-+++ .+.+|+.|..|..|..+ ..    ...+........|+++-+++      .+.-|+.++-|..++.+|...+
T Consensus       146 v~~l~e~-~~vTgsaDKtIklWk~~-~~----l~tf~gHtD~VRgL~vl~~~------~flScsNDg~Ir~w~~~ge~l~  213 (745)
T KOG0301|consen  146 VASLPEN-TYVTGSADKTIKLWKGG-TL----LKTFSGHTDCVRGLAVLDDS------HFLSCSNDGSIRLWDLDGEVLL  213 (745)
T ss_pred             eeecCCC-cEEeccCcceeeeccCC-ch----hhhhccchhheeeeEEecCC------CeEeecCCceEEEEeccCceee
Confidence            3444555 46677778777777643 22    44443334557889888876      6777765555666787771111


Q ss_pred             eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC
Q 016199          168 TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT  247 (393)
Q Consensus       168 ~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~  247 (393)
                        +..|.. +++..+....++.+.++.                 ...+.+-.++.+ .-...+.-.-.....+.+-++|+
T Consensus       214 --~~~ght-n~vYsis~~~~~~~Ivs~-----------------gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD  272 (745)
T KOG0301|consen  214 --EMHGHT-NFVYSISMALSDGLIVST-----------------GEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD  272 (745)
T ss_pred             --eeeccc-eEEEEEEecCCCCeEEEe-----------------cCCceEEEeecC-ceEEEEecCccceEEEEEeeCCC
Confidence              112221 456677766666677774                 222334444432 11111111111122344445664


Q ss_pred             EEEEEeCCCCeEEEEEecC
Q 016199          248 HLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       248 ~l~v~~~~~~ri~~~~~~g  266 (393)
                       +++ ....++|+.|..+.
T Consensus       273 -Ivv-g~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  273 -IVV-GGSDGRVRVFTVDK  289 (745)
T ss_pred             -EEE-eccCceEEEEEecc
Confidence             444 44578888888763

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=89.35  E-value=0.44  Score=26.70  Aligned_cols=18  Identities=11%  Similarity=0.174  Sum_probs=14.6

Q ss_pred             cccccEEEcCCCcEEEEe
Q 016199          177 KLTDGVDVADDGMIYFTD  194 (393)
Q Consensus       177 ~~~~~l~~d~dG~l~~td  194 (393)
                      ..+.+|..|++|+|||+.
T Consensus         5 n~I~~i~~D~~G~lWigT   22 (24)
T PF07494_consen    5 NNIYSIYEDSDGNLWIGT   22 (24)
T ss_dssp             SCEEEEEE-TTSCEEEEE
T ss_pred             CeEEEEEEcCCcCEEEEe
Confidence            457789999999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=89.26  E-value=14  Score=38.76  Aligned_cols=196  Identities=14%  Similarity=0.138  Sum_probs=92.8

Q ss_pred             cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199           82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS  160 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id  160 (393)
                      -.|-.+++++|+|++|-.|+..|.|..+++.....   ...+.......+.+.+...-  .. ++|+.....+. |..+|
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~--~~-~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPV--LT-NKLLASASRDRLIHVYD  532 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhh---hhheecccceeEEEeecCch--hh-hHhhhhccCCceEEEEe
Confidence            36778899999999998888888888888765320   11122223345555554311  00 13433323222 44455


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN  238 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n  238 (393)
                      ..-.-.+....++.. ..+..|.+...|  .-.++....+    .-++......+.|+++--...+-..       ..-.
T Consensus       533 v~rny~l~qtld~HS-ssITsvKFa~~gln~~MiscGADk----simFr~~qk~~~g~~f~r~t~t~~k-------tTlY  600 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHS-SSITSVKFACNGLNRKMISCGADK----SIMFRVNQKASSGRLFPRHTQTLSK-------TTLY  600 (1080)
T ss_pred             cccccchhhhhcccc-cceeEEEEeecCCceEEEeccCch----hhheehhccccCceecccccccccc-------ceEE
Confidence            432001111222221 234455554443  2223321110    0111112223334444332222111       1235


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEe
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .++++|.-+.+ ++..-...|..|++...  .+.+.|...  ..|-+--+..|+.|. |+++.
T Consensus       601 Dm~Vdp~~k~v-~t~cQDrnirif~i~sg--Kq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atS  659 (1080)
T KOG1408|consen  601 DMAVDPTSKLV-VTVCQDRNIRIFDIESG--KQVKSFKGSRDHEGDLIKVILDPSGI-YLATS  659 (1080)
T ss_pred             EeeeCCCcceE-EEEecccceEEEecccc--ceeeeecccccCCCceEEEEECCCcc-EEEEe
Confidence            67788877544 44445667888998632  234445421  224445577899995 55544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=89.17  E-value=23  Score=36.92  Aligned_cols=135  Identities=10%  Similarity=0.115  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCCcceeeeeecCC--CceeeeEECCCCCCCCceEEEEEeCCCc------eEEEeCCc-e-EEEeeccCCc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTG--GRPLGIAFANSDPDADRITMIVADAYKG------LLKISGNS-T-VLLTDEAEGQ  174 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~--~~p~gl~~d~~G~~~~~~~L~v~~~~~g------l~~id~~g-~-~~l~~~~~g~  174 (393)
                      .+.+||+..++    +.......  ..-.+++.- +|      .||+.....|      +-++|+.. . +..+....  
T Consensus       350 ~ve~YD~~~~~----W~~~a~M~~~R~~~~v~~l-~g------~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--  416 (571)
T KOG4441|consen  350 SVERYDPRTNQ----WTPVAPMNTKRSDFGVAVL-DG------KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--  416 (571)
T ss_pred             eEEEecCCCCc----eeccCCccCccccceeEEE-CC------EEEEEeccccccccccEEEecCCCCcccccCCCCc--
Confidence            57888888766    66544321  112455543 57      8888755443      66777765 1 11111111  


Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEE
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~  252 (393)
                       .+.-.++++ -+|.||+.-....           ....-..+.+|||.+++.+.+..-  -..-.|++.. ++ .||+.
T Consensus       417 -~r~~~gv~~-~~g~iYi~GG~~~-----------~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~-~iYvv  481 (571)
T KOG4441|consen  417 -RRSGHGVAV-LGGKLYIIGGGDG-----------SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NG-KIYVV  481 (571)
T ss_pred             -ceeeeEEEE-ECCEEEEEcCcCC-----------CccccceEEEEcCCCCceeecCCcccccccceEEEE-CC-EEEEE
Confidence             122234332 3789998732110           001235799999999998876432  1223445543 33 78887


Q ss_pred             eCCCC-----eEEEEEecCC
Q 016199          253 ETSMR-----RCRKFYIKGK  267 (393)
Q Consensus       253 ~~~~~-----ri~~~~~~g~  267 (393)
                      ...++     .+-+|++..+
T Consensus       482 GG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  482 GGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             CCccCCCccceEEEEcCCCC
Confidence            75443     4778887543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=89.05  E-value=22  Score=36.10  Aligned_cols=76  Identities=17%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             cEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC-EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe-EEECCCC
Q 016199          215 GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT-HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN-IRYDGEG  292 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~-~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~-i~~d~~G  292 (393)
                      ..||.++.++....+-+....-.+.+.++++++ +.+|-+..-..+..|+++++-      .. .+|.-|.| +.+++.|
T Consensus       251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------v~-df~egpRN~~~fnp~g  323 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------VF-DFPEGPRNTAFFNPHG  323 (566)
T ss_pred             ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------eE-eCCCCCccceEECCCC
Confidence            368888877555555555566679999999986 556666667789999987641      22 23434655 6789999


Q ss_pred             CEEEE
Q 016199          293 HYLIA  297 (393)
Q Consensus       293 ~lwva  297 (393)
                      +|.+-
T Consensus       324 ~ii~l  328 (566)
T KOG2315|consen  324 NIILL  328 (566)
T ss_pred             CEEEE
Confidence            96643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=88.78  E-value=11  Score=36.67  Aligned_cols=109  Identities=7%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             eeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheeh
Q 016199          130 PLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILD  207 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~  207 (393)
                      ...+...++|     ++|.+|...+.+-..+..+  ++.+.... .   ..+..+....+|+-.++-             
T Consensus        99 V~~v~WtPeG-----RRLltgs~SGEFtLWNg~~fnFEtilQaH-D---s~Vr~m~ws~~g~wmiSg-------------  156 (464)
T KOG0284|consen   99 VNVVRWTPEG-----RRLLTGSQSGEFTLWNGTSFNFETILQAH-D---SPVRTMKWSHNGTWMISG-------------  156 (464)
T ss_pred             eeeEEEcCCC-----ceeEeecccccEEEecCceeeHHHHhhhh-c---ccceeEEEccCCCEEEEc-------------
Confidence            5678889999     3688885444455555433  22221111 1   124467888888766652             


Q ss_pred             hcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          208 IFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       208 ~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                          ...|-|-.+++.-..+..... .-....+++++|.. ..+++.+..++|..++..
T Consensus       157 ----D~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  157 ----DKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             ----CCCceEEecccchhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEecc
Confidence                223334444554333322211 12346789999854 677888888999888864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=88.76  E-value=19  Score=35.07  Aligned_cols=99  Identities=7%  Similarity=0.074  Sum_probs=56.6

Q ss_pred             CCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCC--------c-----eE-EEeeccCCccccccccEEEcCCCcEE
Q 016199          127 GGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGN--------S-----TV-LLTDEAEGQKFKLTDGVDVADDGMIY  191 (393)
Q Consensus       127 ~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~--------g-----~~-~l~~~~~g~~~~~~~~l~~d~dG~l~  191 (393)
                      ....+.+.|+++|      +++....+.| ++.+-..        +     .+ .+..........-+-+++..+|++..
T Consensus        65 ~~aVN~vRf~p~g------elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   65 TRAVNVVRFSPDG------ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             cceeEEEEEcCCc------CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence            3457899999999      8877655555 3332211        1     00 00000001011234567778888665


Q ss_pred             EEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCE
Q 016199          192 FTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTH  248 (393)
Q Consensus       192 ~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~  248 (393)
                      ++.                 .....++.+|...|.+....+ .-.+++|++++|-+++
T Consensus       139 ~s~-----------------s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  139 VSG-----------------SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             eee-----------------eccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence            552                 234467888877777665443 4577899998887653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.68  E-value=26  Score=34.53  Aligned_cols=242  Identities=13%  Similarity=0.116  Sum_probs=114.4

Q ss_pred             EEEecCCCEEEEEe-cCC----eEEEEEcCCCCCcceee-eeecCCCceeeeEECCCCCCCCceEEEEEeCCC-------
Q 016199           88 LLYDAHSKLIYTGC-EDG----WIKRVTLNDSPADSLVH-NWINTGGRPLGIAFANSDPDADRITMIVADAYK-------  154 (393)
Q Consensus        88 ia~d~~g~~L~~~~-~~g----~I~~~~~~~~~~~~~~~-~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-------  154 (393)
                      +.++|+|+++.++. .+|    .|+.++.+++.   .+. .+..  ....++.+.++|     ..+|......       
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~---~l~d~i~~--~~~~~~~W~~d~-----~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK---FLPDGIEN--PKFSSVSWSDDG-----KGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTE---EEEEEEEE--EESEEEEECTTS-----SEEEEEECSTTTSS-CC
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCc---CcCCcccc--cccceEEEeCCC-----CEEEEEEeCcccccccC
Confidence            56888998665543 344    47788887764   111 1111  112238888876     1343332221       


Q ss_pred             ----ceEEEeCCc--e--EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-
Q 016199          155 ----GLLKISGNS--T--VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-  225 (393)
Q Consensus       155 ----gl~~id~~g--~--~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-  225 (393)
                          .|++.....  .  ..+....++ .+ ..-++..++||...+-....+             .....++.++...+ 
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~-~~-~~~~~~~s~d~~~l~i~~~~~-------------~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDE-PF-WFVSVSRSKDGRYLFISSSSG-------------TSESEVYLLDLDDGG  263 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTC-TT-SEEEEEE-TTSSEEEEEEESS-------------SSEEEEEEEECCCTT
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCC-Cc-EEEEEEecCcccEEEEEEEcc-------------ccCCeEEEEeccccC
Confidence                255555433  1  222222221 11 133677888885444322211             11256888888754 


Q ss_pred             ----eEEEEecCccCCCcEEEcCCCCEEEE-EeC--CCCeEEEEEecCCCCccee-eeeccCCC-CCCeEEECCCCCEEE
Q 016199          226 ----ETKVLVSDLYFANGVVLSPDQTHLVY-CET--SMRRCRKFYIKGKNAGRVE-KFIETLPG-LPDNIRYDGEGHYLI  296 (393)
Q Consensus       226 ----~~~~~~~~l~~~ngi~~s~dg~~l~v-~~~--~~~ri~~~~~~g~~~~~~~-~~~~~l~g-~P~~i~~d~~G~lwv  296 (393)
                          ..+.+.......... +...++.+|+ ++.  .+++|.+++++........ .+...... .-.++....+ .+.+
T Consensus       264 ~~~~~~~~l~~~~~~~~~~-v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl  341 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYY-VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVL  341 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEE-EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEE
T ss_pred             CCcCCcEEEeCCCCceEEE-EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEE
Confidence                455554332211111 1122445555 432  2469999998754332222 33322111 2234444432 3333


Q ss_pred             EEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEEE--eCCEEEE--
Q 016199          297 ALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIK--IGDHLYC--  371 (393)
Q Consensus       297 a~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~--~~g~Lyi--  371 (393)
                      ......                                ...|..++.+ +.....+..+....+.....  ..+.+++  
T Consensus       342 ~~~~~~--------------------------------~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~  389 (414)
T PF02897_consen  342 SYRENG--------------------------------SSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSY  389 (414)
T ss_dssp             EEEETT--------------------------------EEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred             EEEECC--------------------------------ccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence            333221                                0247778888 88777777665433333331  2355544  


Q ss_pred             EecCC-CeEEEEeCCCCC
Q 016199          372 GSVHH-RGILHLDVNQHP  388 (393)
Q Consensus       372 gs~~~-~~i~~~~~~~~~  388 (393)
                      +|+.. ..+.++|+....
T Consensus       390 ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  390 SSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EETTEEEEEEEEETTTTC
T ss_pred             eCCCCCCEEEEEECCCCC
Confidence            44443 578888887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=88.32  E-value=25  Score=33.86  Aligned_cols=158  Identities=15%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEE--E
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLK--I  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~--i  159 (393)
                      .+-.++++-|.|+.+...++|..|..|+.+++.   .+..+.....-..-++...||      .|+.+-.. ..|..  +
T Consensus       194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~---cv~t~~~h~ewvr~v~v~~DG------ti~As~s~dqtl~vW~~  264 (406)
T KOG0295|consen  194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY---CVKTFPGHSEWVRMVRVNQDG------TIIASCSNDQTLRVWVV  264 (406)
T ss_pred             cceeeEEEEecCCeeeecccccceeEEecccce---eEEeccCchHhEEEEEecCCe------eEEEecCCCceEEEEEe
Confidence            444557888888878777789899999888763   234443322334667777888      66555322 22222  2


Q ss_pred             eCCc-eEEEee---ccCC---ccccccccEEE-cC--CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-
Q 016199          160 SGNS-TVLLTD---EAEG---QKFKLTDGVDV-AD--DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-  228 (393)
Q Consensus       160 d~~g-~~~l~~---~~~g---~~~~~~~~l~~-d~--dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-  228 (393)
                      .... ..++..   .++-   .+..+-.++.. .+  +|.=+.+.                ++..+.+-.+|..++..- 
T Consensus       265 ~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s----------------~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  265 ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS----------------GSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe----------------ecccceEEEEeccCCeEEE
Confidence            2110 001100   0000   00000001111 01  12222222                234456777888887543 


Q ss_pred             EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          229 VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       229 ~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ++........+++|+|.|++|+ +-..+..|..|+++.
T Consensus       329 tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  329 TLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKN  365 (406)
T ss_pred             EEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEecc
Confidence            3444567789999999998764 455678999999853

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.31  E-value=12  Score=37.92  Aligned_cols=114  Identities=11%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCc---eeeeEECCCCCCCCceEEEEEeC------------
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGR---PLGIAFANSDPDADRITMIVADA------------  152 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~---p~gl~~d~~G~~~~~~~L~v~~~------------  152 (393)
                      +..-++|+ ++++.. ..+..++..++.    +..+....+.   -+.+...++|      ++++..+            
T Consensus       153 ~~~l~nG~-ll~~~~-~~~~e~D~~G~v----~~~~~l~~~~~~~HHD~~~l~nG------n~L~l~~~~~~~~~~~~~~  220 (477)
T PF05935_consen  153 FKQLPNGN-LLIGSG-NRLYEIDLLGKV----IWEYDLPGGYYDFHHDIDELPNG------NLLILASETKYVDEDKDVD  220 (477)
T ss_dssp             EEE-TTS--EEEEEB-TEEEEE-TT--E----EEEEE--TTEE-B-S-EEE-TTS-------EEEEEEETTEE-TS-EE-
T ss_pred             eeEcCCCC-EEEecC-CceEEEcCCCCE----EEeeecCCcccccccccEECCCC------CEEEEEeecccccCCCCcc
Confidence            34455665 444443 567777777653    3334322211   3678888999      6555433            


Q ss_pred             --CCceEEEeCCc--eEEEe--eccC--------------------CccccccccEEEcC-CCcEEEEeCCCccchhhhe
Q 016199          153 --YKGLLKISGNS--TVLLT--DEAE--------------------GQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       153 --~~gl~~id~~g--~~~l~--~~~~--------------------g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~  205 (393)
                        ...|+.+|++|  +..+.  +..+                    +..-.++|++..++ ++.|+++.           
T Consensus       221 ~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs-----------  289 (477)
T PF05935_consen  221 TVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS-----------  289 (477)
T ss_dssp             --S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE-----------
T ss_pred             EecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc-----------
Confidence              24588888777  33322  1110                    11124678899988 67888874           


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                            .....|+++|..++++.-.
T Consensus       290 ------R~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  290 ------RHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             ------TTT-EEEEEE-TTS-EEEE
T ss_pred             ------CcceEEEEEECCCCcEEEE
Confidence                  3345799999777776644

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.11  E-value=11  Score=38.04  Aligned_cols=153  Identities=12%  Similarity=0.115  Sum_probs=84.4

Q ss_pred             EEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCC--CceEEEEEeCCCceEEEeCC--
Q 016199           88 LLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDA--DRITMIVADAYKGLLKISGN--  162 (393)
Q Consensus        88 ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~--~~~~L~v~~~~~gl~~id~~--  162 (393)
                      |....+.+.||..-. ..+|+.++.+.+.   .++.|... ....-+.+.+++.-+  ..+.-+||-...+|+++|+.  
T Consensus       339 mL~~~dsnlil~~~~~~~~l~klDIE~GK---IVeEWk~~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~  414 (644)
T KOG2395|consen  339 MLHRADSNLILMDGGEQDKLYKLDIERGK---IVEEWKFE-DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ  414 (644)
T ss_pred             hhhccccceEeeCCCCcCcceeeecccce---eeeEeecc-CCcceeeccCCcchhcccccccEEeecCCceEEeccccc
Confidence            444555566665432 4579999988765   35555321 111111222221000  00135677778899999974  


Q ss_pred             ceEEEeeccCCcc---ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC-CC
Q 016199          163 STVLLTDEAEGQK---FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF-AN  238 (393)
Q Consensus       163 g~~~l~~~~~g~~---~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~-~n  238 (393)
                      |...+. ..++..   -+.-+.++...+|.|.++                  +..|.|--||.-..+..+...++.- ..
T Consensus       415 ~~~kl~-~~q~kqy~~k~nFsc~aTT~sG~Ivvg------------------S~~GdIRLYdri~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  415 GKNKLA-VVQSKQYSTKNNFSCFATTESGYIVVG------------------SLKGDIRLYDRIGRRAKTALPGLGDAIK  475 (644)
T ss_pred             Ccceee-eeeccccccccccceeeecCCceEEEe------------------ecCCcEEeehhhhhhhhhcccccCCcee
Confidence            321221 111111   122345677788988888                  3456677788755555556666654 47


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +|.++.||++|+.+  ....|...+..
T Consensus       476 hVdvtadGKwil~T--c~tyLlLi~t~  500 (644)
T KOG2395|consen  476 HVDVTADGKWILAT--CKTYLLLIDTL  500 (644)
T ss_pred             eEEeeccCcEEEEe--cccEEEEEEEe
Confidence            89999999876443  34556665543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=87.79  E-value=24  Score=33.14  Aligned_cols=71  Identities=14%  Similarity=0.180  Sum_probs=46.1

Q ss_pred             eEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           87 DLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        87 ~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      +++|+| ....+-.++.|+.|..|+.+... ...-+......+-++.+++..+|.     +++.+..++.+-.+|...
T Consensus        32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-~~~~ka~~~~~~PvL~v~Wsddgs-----kVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSG-QLVPKAQQSHDGPVLDVCWSDDGS-----KVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             eeEeccccCceEEecccCCceEEEEEecCC-cccchhhhccCCCeEEEEEccCCc-----eEEeeccCCceEEEEccC
Confidence            378888 44444477889988888876521 100111223356679999999982     678887777777788654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=87.59  E-value=41  Score=35.55  Aligned_cols=181  Identities=14%  Similarity=0.160  Sum_probs=98.3

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      .--.+++++.+.. +..+..++.|..|+.++.+   ...++.  ++-.++-.|-+.+     +.+.+|.-.+-+..+|..
T Consensus       374 ~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~k---ciRTi~--~~y~l~~~Fvpgd-----~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  374 SDVRSLCVSSDSI-LLASGAGESIKIWNRDTLK---CIRTIT--CGYILASKFVPGD-----RYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             hheeEEEeecCce-eeeecCCCcEEEEEccCcc---eeEEec--cccEEEEEecCCC-----ceEEEeccCCceEEEEee
Confidence            4456688887764 4444446678888887643   233332  4566777777766     134555333446677654


Q ss_pred             c---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC-------CCC-e-EEEE
Q 016199          163 S---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP-------VTK-E-TKVL  230 (393)
Q Consensus       163 g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~-------~t~-~-~~~~  230 (393)
                      .   .+.+. ..+|    .+..++..|||.=+++-+                 +...|..||.       .+. + +...
T Consensus       443 S~~l~Eti~-AHdg----aIWsi~~~pD~~g~vT~s-----------------aDktVkfWdf~l~~~~~gt~~k~lsl~  500 (888)
T KOG0306|consen  443 SASLVETIR-AHDG----AIWSISLSPDNKGFVTGS-----------------ADKTVKFWDFKLVVSVPGTQKKVLSLK  500 (888)
T ss_pred             hhhhhhhhh-cccc----ceeeeeecCCCCceEEec-----------------CCcEEEEEeEEEEeccCcccceeeeec
Confidence            3   22221 1122    245677788876555532                 1222222221       111 1 1110


Q ss_pred             e-cCccC---CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC--CC-CeEEECCCCCEEEEEecCcc
Q 016199          231 V-SDLYF---ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG--LP-DNIRYDGEGHYLIALATEFS  303 (393)
Q Consensus       231 ~-~~l~~---~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g--~P-~~i~~d~~G~lwva~~~~r~  303 (393)
                      . +.+..   .-.+.+||||++|-|+ -.++++-.|.++.-+     -|. .+-|  +| -.+-+++|+.+.++....++
T Consensus       501 ~~rtLel~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDtlK-----Ffl-sLYGHkLPV~smDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  501 HTRTLELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDTLK-----FFL-SLYGHKLPVLSMDISPDSKLIVTGSADKN  573 (888)
T ss_pred             cceEEeccccEEEEEEcCCCcEEEEE-eccCeEEEEEeccee-----eee-eecccccceeEEeccCCcCeEEeccCCCc
Confidence            0 11223   3457799999876554 468899999987432     122 2222  23 45667888999888776654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=87.39  E-value=24  Score=32.52  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=33.6

Q ss_pred             ecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           91 DAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        91 d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      +..++.||+|+.+| |+.++......   ....... .....|..-++-      ++.+.-+++.++.++.+.
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~---~~~i~~~-~~I~ql~vl~~~------~~llvLsd~~l~~~~L~~   65 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSK---PTRILKL-SSITQLSVLPEL------NLLLVLSDGQLYVYDLDS   65 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCcc---ceeEeec-ceEEEEEEeccc------CEEEEEcCCccEEEEchh
Confidence            44567899998887 88888732210   2222211 224555555543      333333456677666543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=86.95  E-value=31  Score=33.43  Aligned_cols=105  Identities=11%  Similarity=0.130  Sum_probs=65.4

Q ss_pred             EecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-Cc
Q 016199           77 VGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KG  155 (393)
Q Consensus        77 l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~g  155 (393)
                      ..+|...--.++.|++.+ .+|.++.|..|.+||...+.    ...-......-+.+...+.-      +|+++... ..
T Consensus       255 tl~GHt~~Vs~V~w~d~~-v~yS~SwDHTIk~WDletg~----~~~~~~~~ksl~~i~~~~~~------~Ll~~gssdr~  323 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSDAT-VIYSVSWDHTIKVWDLETGG----LKSTLTTNKSLNCISYSPLS------KLLASGSSDRH  323 (423)
T ss_pred             EecccccceeeEEEcCCC-ceEeecccceEEEEEeeccc----ceeeeecCcceeEeeccccc------ceeeecCCCCc
Confidence            445655556678888865 69999999999999998765    22211223345677777776      77777554 44


Q ss_pred             eEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEE
Q 016199          156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFT  193 (393)
Q Consensus       156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~t  193 (393)
                      |..+||..  -......+-|.. +++.++...|... ++++
T Consensus       324 irl~DPR~~~gs~v~~s~~gH~-nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  324 IRLWDPRTGDGSVVSQSLIGHK-NWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             eeecCCCCCCCceeEEeeecch-hhhhheecCCCCceEEEE
Confidence            66668743  222222333433 4677888888774 4444

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.65  E-value=40  Score=34.37  Aligned_cols=128  Identities=13%  Similarity=0.112  Sum_probs=72.5

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEE----CCCCCCCCceEEEEEeCCCceEEEeCCceEEEeecc
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAF----ANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEA  171 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~----d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~  171 (393)
                      .+..|+..|.|+.++..+++    +......+..+..+..    +.-|      .||-+++...+..++......+....
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~----it~~~st~~h~~~v~~~~~~~~~~------ciyS~~ad~~v~~~~~~~~~~~~~~~  141 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGE----ITAKLSTDKHYGNVNEILDAQRLG------CIYSVGADLKVVYILEKEKVIIRIWK  141 (541)
T ss_pred             EEEeecCCccEEEEEecCCe----EEEEEecCCCCCcceeeecccccC------ceEecCCceeEEEEecccceeeeeec
Confidence            56677788888888887765    5544333333322222    1234      56776666667777765411222222


Q ss_pred             CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc-CCCcEEEcCC-----
Q 016199          172 EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY-FANGVVLSPD-----  245 (393)
Q Consensus       172 ~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~-~~ngi~~s~d-----  245 (393)
                      .+.+  .+-.+++.+||.+..+                   +.+.|-.||.+++++-...++.. ..+.+++..+     
T Consensus       142 ~~~~--~~~sl~is~D~~~l~~-------------------as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~  200 (541)
T KOG4547|consen  142 EQKP--LVSSLCISPDGKILLT-------------------ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGII  200 (541)
T ss_pred             cCCC--ccceEEEcCCCCEEEe-------------------ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccc
Confidence            2222  3558899999977765                   23468888888887655544433 3355555544     


Q ss_pred             CCEEEEEeC
Q 016199          246 QTHLVYCET  254 (393)
Q Consensus       246 g~~l~v~~~  254 (393)
                      |++++-+..
T Consensus       201 G~~vLssa~  209 (541)
T KOG4547|consen  201 GKYVLSSAA  209 (541)
T ss_pred             cceeeeccc
Confidence            555544443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=86.37  E-value=30  Score=32.62  Aligned_cols=149  Identities=14%  Similarity=0.055  Sum_probs=82.3

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~~id~~g  163 (393)
                      +-+++|..||..+|+|.-|+.+..|++.+++    +..+....+....+.+-+...+    .+++. .++.-|-.+|...
T Consensus        75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q----~~~v~~Hd~pvkt~~wv~~~~~----~cl~TGSWDKTlKfWD~R~  146 (347)
T KOG0647|consen   75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ----VSQVAAHDAPVKTCHWVPGMNY----QCLVTGSWDKTLKFWDTRS  146 (347)
T ss_pred             eEEEEEccCCceEEeeccCCceEEEEccCCC----eeeeeecccceeEEEEecCCCc----ceeEecccccceeecccCC
Confidence            4578999999999999999999999999887    6666544443344444332200    23333 3344455556543


Q ss_pred             -eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCccC-CC
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLYF-AN  238 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~~-~n  238 (393)
                       ..+..-...++-.      +.|-.. -+.++                  .....|..|+...+..  ......+.+ ..
T Consensus       147 ~~pv~t~~LPeRvY------a~Dv~~pm~vVa------------------ta~r~i~vynL~n~~te~k~~~SpLk~Q~R  202 (347)
T KOG0647|consen  147 SNPVATLQLPERVY------AADVLYPMAVVA------------------TAERHIAVYNLENPPTEFKRIESPLKWQTR  202 (347)
T ss_pred             CCeeeeeeccceee------ehhccCceeEEE------------------ecCCcEEEEEcCCCcchhhhhcCcccceee
Confidence             1111111111111      111111 12222                  2334588887754332  223333433 46


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .|++..|.+. +...+..+|+....++.
T Consensus       203 ~va~f~d~~~-~alGsiEGrv~iq~id~  229 (347)
T KOG0647|consen  203 CVACFQDKDG-FALGSIEGRVAIQYIDD  229 (347)
T ss_pred             EEEEEecCCc-eEeeeecceEEEEecCC
Confidence            7888777753 35566788998888864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.17  E-value=17  Score=35.34  Aligned_cols=70  Identities=23%  Similarity=0.300  Sum_probs=42.3

Q ss_pred             cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--CccCCCcEEEcCCCCEEEEEeC
Q 016199          177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--DLYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~l~~~ngi~~s~dg~~l~v~~~  254 (393)
                      ..+..++++.||++..--                 +..|.|..|+..+=+.-.+..  ...+..+++|+||.+.+ .+-+
T Consensus       282 ~siSsl~VS~dGkf~AlG-----------------T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~-~svS  343 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLALG-----------------TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL-ASVS  343 (398)
T ss_pred             CcceeEEEcCCCcEEEEe-----------------ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc-cccc
Confidence            346789999999755321                 446778899875433322222  34578999999998644 2233


Q ss_pred             CCCeEEEEEe
Q 016199          255 SMRRCRKFYI  264 (393)
Q Consensus       255 ~~~ri~~~~~  264 (393)
                      ...+.....+
T Consensus       344 s~~~~~v~~l  353 (398)
T KOG0771|consen  344 SDNEAAVTKL  353 (398)
T ss_pred             cCCceeEEEE
Confidence            3444444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.64  E-value=48  Score=34.38  Aligned_cols=151  Identities=13%  Similarity=0.050  Sum_probs=90.4

Q ss_pred             EecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCceEEEe
Q 016199           90 YDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNSTVLLT  168 (393)
Q Consensus        90 ~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~~~l~  168 (393)
                      |-...+.+.+|+.|.+|..|+.++..   .++.|.....-...|+++|..      -..+..++.- |-.++-++.-...
T Consensus        63 fiaRknWiv~GsDD~~IrVfnynt~e---kV~~FeAH~DyIR~iavHPt~------P~vLtsSDDm~iKlW~we~~wa~~  133 (794)
T KOG0276|consen   63 FIARKNWIVTGSDDMQIRVFNYNTGE---KVKTFEAHSDYIRSIAVHPTL------PYVLTSSDDMTIKLWDWENEWACE  133 (794)
T ss_pred             eeeccceEEEecCCceEEEEecccce---eeEEeeccccceeeeeecCCC------CeEEecCCccEEEEeeccCceeee
Confidence            44556678889999999999887653   266676555667889999987      4445444443 3344655411122


Q ss_pred             eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC
Q 016199          169 DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT  247 (393)
Q Consensus       169 ~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~  247 (393)
                      ..++|.. .++-.+++.|.. +-+++ ++.              ..+-.||.+-...-.. ++.......|.|.+-+.|+
T Consensus       134 qtfeGH~-HyVMqv~fnPkD~ntFaS-~sL--------------DrTVKVWslgs~~~nf-Tl~gHekGVN~Vdyy~~gd  196 (794)
T KOG0276|consen  134 QTFEGHE-HYVMQVAFNPKDPNTFAS-ASL--------------DRTVKVWSLGSPHPNF-TLEGHEKGVNCVDYYTGGD  196 (794)
T ss_pred             eEEcCcc-eEEEEEEecCCCccceee-eec--------------cccEEEEEcCCCCCce-eeeccccCcceEEeccCCC
Confidence            2345543 456788999865 55554 222              2344566554332222 2333455678888887765


Q ss_pred             E-EEEEeCCCCeEEEEEecC
Q 016199          248 H-LVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       248 ~-l~v~~~~~~ri~~~~~~g  266 (393)
                      . .+++......+-.||.+.
T Consensus       197 kpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  197 KPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             cceEEecCCCceEEEeecch
Confidence            3 456666666777777654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.02  E-value=36  Score=32.37  Aligned_cols=167  Identities=14%  Similarity=0.129  Sum_probs=77.7

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce--EEEeec
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST--VLLTDE  170 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~--~~l~~~  170 (393)
                      ..|+....+.|++-.-.+..    ++.+.   ...+.|.++....++      ..+++...+.|++-.-.|.  +.+...
T Consensus        73 ~g~ivG~~g~ll~T~DgG~t----W~~v~l~~~lpgs~~~i~~l~~~------~~~l~~~~G~iy~T~DgG~tW~~~~~~  142 (302)
T PF14870_consen   73 EGWIVGEPGLLLHTTDGGKT----WERVPLSSKLPGSPFGITALGDG------SAELAGDRGAIYRTTDGGKTWQAVVSE  142 (302)
T ss_dssp             EEEEEEETTEEEEESSTTSS-----EE----TT-SS-EEEEEEEETT------EEEEEETT--EEEESSTTSSEEEEE-S
T ss_pred             ceEEEcCCceEEEecCCCCC----cEEeecCCCCCCCeeEEEEcCCC------cEEEEcCCCcEEEeCCCCCCeeEcccC
Confidence            46665556655554333333    55542   234567777776677      7777766666777654452  222222


Q ss_pred             cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEE-EEeCCCCeEEEEec-CccCCCcEEEcCCCCE
Q 016199          171 AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLL-SFDPVTKETKVLVS-DLYFANGVVLSPDQTH  248 (393)
Q Consensus       171 ~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~-~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~  248 (393)
                      ..    ....++...+||++....                  ..|.+| ..|+.....+...+ .......+.+++|+ .
T Consensus       143 ~~----gs~~~~~r~~dG~~vavs------------------~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~  199 (302)
T PF14870_consen  143 TS----GSINDITRSSDGRYVAVS------------------SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-N  199 (302)
T ss_dssp             --------EEEEEE-TTS-EEEEE------------------TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--
T ss_pred             Cc----ceeEeEEECCCCcEEEEE------------------CcccEEEEecCCCccceEEccCccceehhceecCCC-C
Confidence            22    234567788899755442                  234555 45664333444433 24556778899997 5


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeeeecc-CCCCCC-----eEEECCCCCEEEEEec
Q 016199          249 LVYCETSMRRCRKFYIKGKNAGRVEKFIET-LPGLPD-----NIRYDGEGHYLIALAT  300 (393)
Q Consensus       249 l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-l~g~P~-----~i~~d~~G~lwva~~~  300 (393)
                      ||+... .+.|..=+ ..   ...+.+.+. .|-..+     .++..+++.+|++...
T Consensus       200 lw~~~~-Gg~~~~s~-~~---~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  200 LWMLAR-GGQIQFSD-DP---DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             EEEEET-TTEEEEEE--T---TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             EEEEeC-CcEEEEcc-CC---CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            766653 34444433 11   122333211 111111     2577888999998763

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=84.97  E-value=32  Score=31.70  Aligned_cols=155  Identities=14%  Similarity=0.092  Sum_probs=80.8

Q ss_pred             CCCceEEEecCCCEEEEEe--c-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGC--E-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~--~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      ..+++++++++|+.+.+-.  . ...++....++.     ..... .+.....-.++++|      .+|+.+......++
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----~~~~~-~g~~l~~PS~d~~g------~~W~v~~~~~~~~~   91 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----VRPVL-TGGSLTRPSWDPDG------WVWTVDDGSGGVRV   91 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----ceeec-cCCccccccccCCC------CEEEEEcCCCceEE
Confidence            3677889999988554333  2 235666654433     22221 23345566788999      99999765543332


Q ss_pred             e---CCc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEE----eCCCCeEEE-
Q 016199          160 S---GNS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSF----DPVTKETKV-  229 (393)
Q Consensus       160 d---~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~----d~~t~~~~~-  229 (393)
                      -   .++ .....-...... ..+..+.+++|| ++-+.-               +....++|+.-    +.+ +.... 
T Consensus        92 ~~~~~~g~~~~~~v~~~~~~-~~I~~l~vSpDG~RvA~v~---------------~~~~~~~v~va~V~r~~~-g~~~~l  154 (253)
T PF10647_consen   92 VRDSASGTGEPVEVDWPGLR-GRITALRVSPDGTRVAVVV---------------EDGGGGRVYVAGVVRDGD-GVPRRL  154 (253)
T ss_pred             EEecCCCcceeEEecccccC-CceEEEEECCCCcEEEEEE---------------ecCCCCeEEEEEEEeCCC-CCccee
Confidence            2   334 222111111110 046789999999 444331               11122445432    222 21111 


Q ss_pred             -----Ee-cCccCCCcEEEcCCCCEEEEEeCCCCeEEE-EEecC
Q 016199          230 -----LV-SDLYFANGVVLSPDQTHLVYCETSMRRCRK-FYIKG  266 (393)
Q Consensus       230 -----~~-~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~-~~~~g  266 (393)
                           +. .....+..+++..++..+++.......+.. +.++|
T Consensus       155 ~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  155 TGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             ccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence                 11 123456788999888666666555555666 55554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.92  E-value=42  Score=33.13  Aligned_cols=183  Identities=13%  Similarity=0.189  Sum_probs=97.6

Q ss_pred             eEEEecCCC-EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCC--
Q 016199           87 DLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGN--  162 (393)
Q Consensus        87 ~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~--  162 (393)
                      ++++...-+ .|..|+.|..|..|+.+.++   ....+.+.++....+.+.+.-+     .+++...+.+ +...|-.  
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---p~~s~~~~~k~Vq~l~wh~~~p-----~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGK---PKSSITHHGKKVQTLEWHPYEP-----SVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCC---cceehhhcCCceeEEEecCCCc-----eEEEeccccceEEeeeccCc
Confidence            444544333 45566779999999998765   1233334566778888887542     4444434444 4444422  


Q ss_pred             -c-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC--eEEEEecCccCC
Q 016199          163 -S-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK--ETKVLVSDLYFA  237 (393)
Q Consensus       163 -g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~--~~~~~~~~l~~~  237 (393)
                       . ...+.  +.+    -+..+++++.. +.+|..                 +..|.|+.||...-  -+..+...-...
T Consensus       320 ~~s~~~wk--~~g----~VEkv~w~~~se~~f~~~-----------------tddG~v~~~D~R~~~~~vwt~~AHd~~I  376 (463)
T KOG0270|consen  320 SNSGKEWK--FDG----EVEKVAWDPHSENSFFVS-----------------TDDGTVYYFDIRNPGKPVWTLKAHDDEI  376 (463)
T ss_pred             cccCceEE--ecc----ceEEEEecCCCceeEEEe-----------------cCCceEEeeecCCCCCceeEEEeccCCc
Confidence             1 11111  111    13345666644 333332                 45678888886432  222232223456


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      .|+++...-..++.+......+..+++.+...+......-.+ |.-..++.+++--+|++..+.
T Consensus       377 Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~  439 (463)
T KOG0270|consen  377 SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGE  439 (463)
T ss_pred             ceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCc
Confidence            788888776678788776666666666543221111110011 223445667776677776654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.86  E-value=21  Score=36.10  Aligned_cols=156  Identities=14%  Similarity=0.173  Sum_probs=86.2

Q ss_pred             CCCceE-EEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCC-CC-CceEEEEEeCCCceEE
Q 016199           83 KGPEDL-LYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDP-DA-DRITMIVADAYKGLLK  158 (393)
Q Consensus        83 ~~Pe~i-a~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~-~~-~~~~L~v~~~~~gl~~  158 (393)
                      .-|+.+ ..+.+...||.... ...++.++.+.+.   .++.|..... . -+.+.+... +. .-+.-+||-+..+|++
T Consensus       467 idp~K~mlh~~dssli~~dg~~~~kLykmDIErGk---vveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFr  541 (776)
T COG5167         467 IDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGK---VVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFR  541 (776)
T ss_pred             CChhhceeecCCcceEEecCCCcccceeeecccce---eeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEE
Confidence            456664 44555556665433 4579999887654   2555542111 1 111221100 00 0013567878899999


Q ss_pred             EeCC--ceEEEeec---cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          159 ISGN--STVLLTDE---AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       159 id~~--g~~~l~~~---~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      |||.  |.++.+.+   ..+. ..| +.......|.|-++                  +..|-|--||.-+.+..+.+.+
T Consensus       542 IDPR~~gNKi~v~esKdY~tK-n~F-ss~~tTesGyIa~a------------------s~kGDirLyDRig~rAKtalP~  601 (776)
T COG5167         542 IDPRARGNKIKVVESKDYKTK-NKF-SSGMTTESGYIAAA------------------SRKGDIRLYDRIGKRAKTALPG  601 (776)
T ss_pred             ecccccCCceeeeeehhcccc-ccc-cccccccCceEEEe------------------cCCCceeeehhhcchhhhcCcc
Confidence            9984  42222211   1111 111 23345557776666                  3456688888776666666665


Q ss_pred             ccC-CCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          234 LYF-ANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       234 l~~-~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +.- .-+|.++.+|++++.+  ..+.|...++.
T Consensus       602 lG~aIk~idvta~Gk~ilaT--Ck~yllL~d~~  632 (776)
T COG5167         602 LGDAIKHIDVTANGKHILAT--CKNYLLLTDVP  632 (776)
T ss_pred             cccceeeeEeecCCcEEEEe--ecceEEEEecc
Confidence            543 5789999999877654  34677777765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=84.82  E-value=38  Score=32.44  Aligned_cols=190  Identities=12%  Similarity=0.119  Sum_probs=102.3

Q ss_pred             CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCC-CCCCCceEEEEEeCCCceEEEeCCc---eEEEe-e
Q 016199           95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANS-DPDADRITMIVADAYKGLLKISGNS---TVLLT-D  169 (393)
Q Consensus        95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~-G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~-~  169 (393)
                      ..+-++..+|.|..|++.+++   ..+.+.......++++|-.. ++    +.++.|...+-|-.+|...   ..++. .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~---~l~~fk~~~~~~N~vrf~~~ds~----h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ---LLEEFKGPPATTNGVRFISCDSP----HGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh---hhheecCCCCcccceEEecCCCC----CeeEEeccCCeEEEEEeecchhhhheecc
Confidence            357788889999999988743   14444433344567777542 21    2578886666677777533   11111 1


Q ss_pred             ccCCccccccccEEEcC--CCcEEEEeCCCccchhhheehhccc-CCCcEEEEEeCCCCeE--EEEec-CccCCCcEEEc
Q 016199          170 EAEGQKFKLTDGVDVAD--DGMIYFTDASNKYYLREYILDIFEG-KPNGRLLSFDPVTKET--KVLVS-DLYFANGVVLS  243 (393)
Q Consensus       170 ~~~g~~~~~~~~l~~d~--dG~l~~td~~~~~~~~~~~~~~~e~-~~~g~l~~~d~~t~~~--~~~~~-~l~~~ngi~~s  243 (393)
                      ...+.++     +.+|.  .+++.-+..              |. .....|+.||-...+.  ..+.+ ...-...+.|.
T Consensus       114 ~~~~~~f-----~~ld~nck~~ii~~Gt--------------E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH  174 (376)
T KOG1188|consen  114 QQSGTPF-----ICLDLNCKKNIIACGT--------------ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH  174 (376)
T ss_pred             CCCCCcc-----eEeeccCcCCeEEecc--------------ccccCceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence            2222222     23443  566665531              11 1234577788643321  11111 12234567788


Q ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCCcce-eeeeccCCCCCCeEEECCCC--CEEEEEecCcchhhhhhhc
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKGKNAGRV-EKFIETLPGLPDNIRYDGEG--HYLIALATEFSTYWDLAYR  311 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~-~~~~~~l~g~P~~i~~d~~G--~lwva~~~~r~~~~~~~~~  311 (393)
                      |..-.++++.+..+-+..||++++..... ...+ +....-.-+..-++|  ++|.-++-..-.++++-..
T Consensus       175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             CCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            88878999999999999999976521111 1111 111111224455666  6777665544445544433

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=84.63  E-value=25  Score=33.30  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=70.6

Q ss_pred             eeeeEECCCCCCCCceEEEEEeC-CCceEEEeCC-c-eE-EEeec------cCCccccccccEEEc----CCCcEEEEeC
Q 016199          130 PLGIAFANSDPDADRITMIVADA-YKGLLKISGN-S-TV-LLTDE------AEGQKFKLTDGVDVA----DDGMIYFTDA  195 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~-g-~~-~l~~~------~~g~~~~~~~~l~~d----~dG~l~~td~  195 (393)
                      .+++..+.+|      +++|..- ..-|+.++++ | +. .+...      ..+..+..-|+..+-    .+++|-+-|-
T Consensus       146 iNsV~~~~~G------~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDDG------DYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCCc------cEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            4678888888      8777743 3458899854 4 21 22100      011225556676666    5666665542


Q ss_pred             C-CccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC--------CcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          196 S-NKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA--------NGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       196 ~-~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~--------ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      . ...        .......++++.+|+.+++.+.+......+        -.+..-++| .+++++...+++.-|+.+|
T Consensus       220 ~~~~~--------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nG-n~li~~g~~g~~~E~~~~G  290 (299)
T PF14269_consen  220 ANSDF--------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNG-NVLIGWGNNGRISEFTPDG  290 (299)
T ss_pred             CCCCC--------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCC-CEEEecCCCceEEEECCCC
Confidence            1 100        011235678999999977665543221112        224455666 5678888888888888665


Q ss_pred             C
Q 016199          267 K  267 (393)
Q Consensus       267 ~  267 (393)
                      +
T Consensus       291 ~  291 (299)
T PF14269_consen  291 E  291 (299)
T ss_pred             C
Confidence            3

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=83.84  E-value=61  Score=34.05  Aligned_cols=97  Identities=11%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCceEEE---eCCc
Q 016199           89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKGLLKI---SGNS  163 (393)
Q Consensus        89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i---d~~g  163 (393)
                      ++|..++.+-+|+..|.+|.|+.+++.    ...+.+  ..+......+..+.      .+.++...+|.+.+   +...
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~----~~~~~~~~~~~~~~~~~vs~~e------~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGE----MRKLKNEGATGITCVRSVSSVE------YLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchh----hhcccccCccceEEEEEecchh------HhhhhhcCCceEEeehhhccC
Confidence            355666677788888888888877654    222222  11222334455554      45444445554433   2222


Q ss_pred             --eEEEeeccCCccccccccEEEcCCC-cEEEEeC
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDA  195 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~  195 (393)
                        ...+....+-..-..+..+.++++| ++|.+|.
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~  144 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS  144 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence              1111111111112346788999999 8999974

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=83.82  E-value=4.9  Score=39.80  Aligned_cols=65  Identities=15%  Similarity=0.235  Sum_probs=34.7

Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc--eeeeec--------------cCCCCCCeEEECCCCC-EEEE
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR--VEKFIE--------------TLPGLPDNIRYDGEGH-YLIA  297 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~--~~~~~~--------------~l~g~P~~i~~d~~G~-lwva  297 (393)
                      ..+..|.+|-|.++|||+....+.|..||++.+..-+  -++++.              .+.|-|.-+.++-||+ +|++
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            3468899999999999999999999999998542111  112221              1234577788999997 8887


Q ss_pred             Ee
Q 016199          298 LA  299 (393)
Q Consensus       298 ~~  299 (393)
                      +.
T Consensus       392 nS  393 (461)
T PF05694_consen  392 NS  393 (461)
T ss_dssp             --
T ss_pred             ee
Confidence            54

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=83.42  E-value=42  Score=31.89  Aligned_cols=55  Identities=13%  Similarity=0.093  Sum_probs=34.3

Q ss_pred             eeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEe
Q 016199          130 PLGIAFANSDPDADRITMIVADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTD  194 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td  194 (393)
                      ...+.|.+.|.     .|-+|-..+.++.+|..+   ...+..     ..+-+..++.++||+..++.
T Consensus        26 a~~~~Fs~~G~-----~lAvGc~nG~vvI~D~~T~~iar~lsa-----H~~pi~sl~WS~dgr~Llts   83 (405)
T KOG1273|consen   26 AECCQFSRWGD-----YLAVGCANGRVVIYDFDTFRIARMLSA-----HVRPITSLCWSRDGRKLLTS   83 (405)
T ss_pred             cceEEeccCcc-----eeeeeccCCcEEEEEccccchhhhhhc-----cccceeEEEecCCCCEeeee
Confidence            45677888881     344444456677887655   122211     12335688999999988885

>PHA03098 kelch-like protein; Provisional

Probab=83.10  E-value=59  Score=33.35  Aligned_cols=134  Identities=10%  Similarity=-0.004  Sum_probs=64.9

Q ss_pred             eEEEEEcCCCCCcceeeeeecCC-Cc-eeeeEECCCCCCCCceEEEEEeCCC------ceEEEeCCc-e-EEEeeccCCc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTG-GR-PLGIAFANSDPDADRITMIVADAYK------GLLKISGNS-T-VLLTDEAEGQ  174 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~-~~-p~gl~~d~~G~~~~~~~L~v~~~~~------gl~~id~~g-~-~~l~~~~~g~  174 (393)
                      .+++|++.+..    +....... .+ -.+++. -+|      +||+.....      -+.++|+.. . +... .... 
T Consensus       312 ~v~~yd~~~~~----W~~~~~~~~~R~~~~~~~-~~~------~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~lp~-  378 (534)
T PHA03098        312 SVVSYDTKTKS----WNKVPELIYPRKNPGVTV-FNN------RIYVIGGIYNSISLNTVESWKPGESKWREEP-PLIF-  378 (534)
T ss_pred             cEEEEeCCCCe----eeECCCCCcccccceEEE-ECC------EEEEEeCCCCCEecceEEEEcCCCCceeeCC-CcCc-
Confidence            57888887765    55443221 11 123332 256      888874432      155666654 1 1111 1111 


Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC--CcEEEcCCCCEEEEE
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA--NGVVLSPDQTHLVYC  252 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~--ngi~~s~dg~~l~v~  252 (393)
                      + +..+.. ..-+|.||+.-....           .+.....+++||+.+++.+.+.. ...+  ..-+...++ .+|+.
T Consensus       379 ~-r~~~~~-~~~~~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~  443 (534)
T PHA03098        379 P-RYNPCV-VNVNNLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDG-KIYVI  443 (534)
T ss_pred             C-CccceE-EEECCEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCC-CCccccCceEEEECC-EEEEE
Confidence            1 112222 233678888632110           00123568999999888876532 2111  111222344 67776


Q ss_pred             eCCC--------CeEEEEEecC
Q 016199          253 ETSM--------RRCRKFYIKG  266 (393)
Q Consensus       253 ~~~~--------~ri~~~~~~g  266 (393)
                      +-..        ..+++||+..
T Consensus       444 GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        444 GGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             CCccCCCCCcccceEEEecCCC
Confidence            5321        2488898754

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.20  E-value=46  Score=31.45  Aligned_cols=146  Identities=16%  Similarity=0.110  Sum_probs=77.2

Q ss_pred             EecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEE
Q 016199           90 YDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLL  167 (393)
Q Consensus        90 ~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l  167 (393)
                      ++-.|+.+|++.-+.++..++..+.+.+...-.+...++..+.+++..+       .-|++....||..+|-..  ...+
T Consensus       134 v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn-------~AYvA~~d~GL~ivDVSnp~sPvl  206 (370)
T COG5276         134 VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGN-------YAYVAWRDGGLTIVDVSNPHSPVL  206 (370)
T ss_pred             EEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecC-------eEEEEEeCCCeEEEEccCCCCCeE
Confidence            3445777888876555777777654422222233333333456666533       689998889999998654  2233


Q ss_pred             eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCc---EEE
Q 016199          168 TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANG---VVL  242 (393)
Q Consensus       168 ~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ng---i~~  242 (393)
                      ....+-.+  .+.++.+. +.+.|+++.                  +-+|+..|..+.+-..+...  -..|.+   +.+
T Consensus       207 i~~~n~g~--g~~sv~vs-dnr~y~vvy------------------~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V  265 (370)
T COG5276         207 IGSYNTGP--GTYSVSVS-DNRAYLVVY------------------DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV  265 (370)
T ss_pred             EEEEecCC--ceEEEEec-CCeeEEEEc------------------ccceEEEecCCCCCceEeeccccCCcccccceec
Confidence            22211111  23344333 567888862                  23588887654332122111  122333   344


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecC
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      +  |+..|+.+- ...+-..+.+.
T Consensus       266 s--~~~~Yvadg-a~gl~~idisn  286 (370)
T COG5276         266 S--GEYAYVADG-AKGLPIIDISN  286 (370)
T ss_pred             c--cceeeeecc-ccCceeEeccC
Confidence            3  457888874 44566666653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.07  E-value=5.2  Score=24.48  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=25.8

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVT  110 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~  110 (393)
                      .+......+|++.++++.+.+++.|+.|..|+
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            34445667899999999898999999888775

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=81.83  E-value=8.5  Score=37.26  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             CceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC----ceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchh
Q 016199          128 GRPLGIAFANSDPDADRITMIVADAYKGLLKISGN----STVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLR  202 (393)
Q Consensus       128 ~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~----g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~  202 (393)
                      ..+......++|     +-+++++...+...++-.    +.+.+ ......  ..++.+.+..+. ...++|.       
T Consensus        63 ~a~~~~~~s~~~-----~llAv~~~~K~~~~f~~~~~~~~~kl~-~~~~v~--~~~~ai~~~~~~~sv~v~dk-------  127 (390)
T KOG3914|consen   63 LAPALVLTSDSG-----RLVAVATSSKQRAVFDYRENPKGAKLL-DVSCVP--KRPTAISFIREDTSVLVADK-------  127 (390)
T ss_pred             ccccccccCCCc-----eEEEEEeCCCceEEEEEecCCCcceee-eEeecc--cCcceeeeeeccceEEEEee-------
Confidence            344555556666     235666666664443322    21122 111111  234566665544 5666652       


Q ss_pred             hheehhcccCCCcEEEEEeCC---CCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC-eEEEE
Q 016199          203 EYILDIFEGKPNGRLLSFDPV---TKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR-RCRKF  262 (393)
Q Consensus       203 ~~~~~~~e~~~~g~l~~~d~~---t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~-ri~~~  262 (393)
                                 .|-++.+|--   .+..+..+..+.....|++++|+++++.++.... ||.+|
T Consensus       128 -----------agD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y  180 (390)
T KOG3914|consen  128 -----------AGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY  180 (390)
T ss_pred             -----------cCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence                       3345555432   2555566666777889999999999988887433 44444

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=81.79  E-value=4.5  Score=30.71  Aligned_cols=36  Identities=14%  Similarity=0.164  Sum_probs=28.1

Q ss_pred             EEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcC
Q 016199           76 KVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLN  112 (393)
Q Consensus        76 ~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~  112 (393)
                      .+..| +..|.+|+++++++.||+++. .+.|..+..+
T Consensus        48 ~va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   48 VVASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             Eeecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            34344 789999999999999999886 5677777654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=81.64  E-value=13  Score=36.29  Aligned_cols=64  Identities=13%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r  302 (393)
                      .-+..+++++|+.+ .++.+..+.+..||+.   +|+.....+....++.+++.|+-+.+.......|
T Consensus       124 ~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~---~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  124 DDIYDLAWSPDSNF-LVSGSVDNSVRLWDVH---AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             cchhhhhccCCCce-eeeeeccceEEEEEec---cceeEeeccccccccceeecchhhhhhhhhccCc
Confidence            45778899999964 4667788999999984   4555544444455778888877776665555444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=81.53  E-value=71  Score=33.20  Aligned_cols=60  Identities=23%  Similarity=0.286  Sum_probs=33.2

Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCC-cceeee-eccCCCC------CCeEEECCCCCEEEEEe
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNA-GRVEKF-IETLPGL------PDNIRYDGEGHYLIALA  299 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~-~~~~~~-~~~l~g~------P~~i~~d~~G~lwva~~  299 (393)
                      +-+..|+..|.-+...++.|-.||+..... ...+.. .+..+..      --+++.|+.|.+..|.-
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            335578777766665578888899864421 111111 1111100      13578899998666544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=81.32  E-value=28  Score=34.50  Aligned_cols=155  Identities=14%  Similarity=0.207  Sum_probs=85.8

Q ss_pred             ceEEEecCCC--EEEEEecCCeEEEEEcCCCCCc-ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eC
Q 016199           86 EDLLYDAHSK--LIYTGCEDGWIKRVTLNDSPAD-SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SG  161 (393)
Q Consensus        86 e~ia~d~~g~--~L~~~~~~g~I~~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~  161 (393)
                      .+++|.|-.+  .+-+|+..|.|-.|+..+.+-+ ..+..+....+...+|.|.+.+.+    .+|.. .+.|..++ |.
T Consensus       190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ss-SyDGtiR~~D~  264 (498)
T KOG4328|consen  190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSS-SYDGTIRLQDF  264 (498)
T ss_pred             EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeee-ccCceeeeeee
Confidence            4577888543  5667888898999988532100 113333333445678999886521    46666 56665554 65


Q ss_pred             Cc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCccC
Q 016199          162 NS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLYF  236 (393)
Q Consensus       162 ~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~~  236 (393)
                      ++  .+.+... +... ....++.+.. ++.++|++                  .-|-+-.+|..++..  ..+.-.-..
T Consensus       265 ~~~i~e~v~s~-~~d~-~~fs~~d~~~e~~~vl~~~------------------~~G~f~~iD~R~~~s~~~~~~lh~kK  324 (498)
T KOG4328|consen  265 EGNISEEVLSL-DTDN-IWFSSLDFSAESRSVLFGD------------------NVGNFNVIDLRTDGSEYENLRLHKKK  324 (498)
T ss_pred             cchhhHHHhhc-Cccc-eeeeeccccCCCccEEEee------------------cccceEEEEeecCCccchhhhhhhcc
Confidence            55  2222111 0111 1122344444 34666664                  122233445443332  222212236


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      .+++++.|-..+++.+...++....||+.
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R  353 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLR  353 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehh
Confidence            78999999988888888888888888875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=81.28  E-value=66  Score=32.67  Aligned_cols=185  Identities=12%  Similarity=0.167  Sum_probs=97.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEE-EEeCCCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMI-VADAYKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~-v~~~~~gl~~id  160 (393)
                      ....++.++++|+.|-+|+.+|.|..||.....   .+..+.. ...+.-.++..  +      .++ .+...+-|...|
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k---~~~~~~~~h~~rvg~laW~--~------~~lssGsr~~~I~~~d  286 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK---KTRTLRGSHASRVGSLAWN--S------SVLSSGSRDGKILNHD  286 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhhcc---ccccccCCcCceeEEEecc--C------ceEEEecCCCcEEEEE
Confidence            567779999999999999999999999976532   0222221 22344445544  4      344 443333466665


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCc
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANG  239 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ng  239 (393)
                      ..-.+.+.....+.. ..+.++...+||+...+-                 ...+.++.+|...... ..+.....-.-.
T Consensus       287 vR~~~~~~~~~~~H~-qeVCgLkws~d~~~lASG-----------------gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA  348 (484)
T KOG0305|consen  287 VRISQHVVSTLQGHR-QEVCGLKWSPDGNQLASG-----------------GNDNVVFIWDGLSPEPKFTFTEHTAAVKA  348 (484)
T ss_pred             Eecchhhhhhhhccc-ceeeeeEECCCCCeeccC-----------------CCccceEeccCCCccccEEEeccceeeeE
Confidence            432001111111211 236688899998765541                 3345788888633222 222222333456


Q ss_pred             EEEcCCCCEEEEEeCC-CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          240 VVLSPDQTHLVYCETS-MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~-~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++++|=.+.|+.+..+ ..++.+|+-.  .++....-++ -...-.++...+..+=.++++
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~--~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNT--NTGARIDSVD-TGSQVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEc--CCCcEecccc-cCCceeeEEEcCCCCEEEEec
Confidence            7777776666665543 3356665532  1222221111 112445666666665444444

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=80.63  E-value=75  Score=32.89  Aligned_cols=152  Identities=11%  Similarity=0.112  Sum_probs=80.7

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLL  157 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~  157 (393)
                      .|...+--++++...++.|+.|+.|..+..|+..++.    -..... +..-.+.+++..+      .+.++ ..+.-|.
T Consensus       246 ~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----C~~~l~-gh~stv~~~~~~~------~~~~sgs~D~tVk  314 (537)
T KOG0274|consen  246 VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----CTHSLQ-GHTSSVRCLTIDP------FLLVSGSRDNTVK  314 (537)
T ss_pred             cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----EEEEec-CCCceEEEEEccC------ceEeeccCCceEE
Confidence            3444445557776545678888889999999877664    222221 1111222333333      33333 2334455


Q ss_pred             EEeCC-c--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-
Q 016199          158 KISGN-S--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-  233 (393)
Q Consensus       158 ~id~~-g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-  233 (393)
                      .++-+ +  ...+.    + ....++.+..+  +.+.|+-                 +..+.|-.||+.+++.-....+ 
T Consensus       315 VW~v~n~~~l~l~~----~-h~~~V~~v~~~--~~~lvsg-----------------s~d~~v~VW~~~~~~cl~sl~gH  370 (537)
T KOG0274|consen  315 VWDVTNGACLNLLR----G-HTGPVNCVQLD--EPLLVSG-----------------SYDGTVKVWDPRTGKCLKSLSGH  370 (537)
T ss_pred             EEeccCcceEEEec----c-ccccEEEEEec--CCEEEEE-----------------ecCceEEEEEhhhceeeeeecCC
Confidence            55543 3  22322    1 11234566665  5444442                 3345677888776665433333 


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      ......+.++..  ..+++.+.+..|..+|+.+.
T Consensus       371 ~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  371 TGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             cceEEEEEecCc--ceEEeeeeccceEeecCCch
Confidence            233445554432  45667777888999998654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=80.55  E-value=55  Score=31.28  Aligned_cols=59  Identities=8%  Similarity=0.179  Sum_probs=31.2

Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-CCCCCeEEECCCCCEEEEEecC
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-PGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +++-++.| +.....+.++.|+++.........+.... ...-.-.+++.||.+.+.....
T Consensus       315 ~d~~~~~l-a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd  374 (385)
T KOG1034|consen  315 FDPWQKML-ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD  374 (385)
T ss_pred             ecHHHHHH-hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence            34445433 44445688999998753221111121111 1123446678899988877654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=80.37  E-value=71  Score=32.47  Aligned_cols=153  Identities=10%  Similarity=0.056  Sum_probs=81.8

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS  163 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g  163 (393)
                      ++.+.+|++.+-.|..|+.+..|+.....   ....+....+....|++.|--.     .|+....+   +-|...|..+
T Consensus       306 gLkws~d~~~lASGgnDN~~~Iwd~~~~~---p~~~~~~H~aAVKA~awcP~q~-----~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  306 GLKWSPDGNQLASGGNDNVVFIWDGLSPE---PKFTFTEHTAAVKALAWCPWQS-----GLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             eeEECCCCCeeccCCCccceEeccCCCcc---ccEEEeccceeeeEeeeCCCcc-----CceEEcCCCcccEEEEEEcCC
Confidence            37788888755555567788888874322   1333444456778888887320     34443222   2244445543


Q ss_pred             eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVL  242 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~  242 (393)
                      ...+.....+   ..+..|...+.. .|..+-...              ...-.||+|..- +....+.......-.+++
T Consensus       378 g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s--------------~n~i~lw~~ps~-~~~~~l~gH~~RVl~la~  439 (484)
T KOG0305|consen  378 GARIDSVDTG---SQVCSLIWSKKYKELLSTHGYS--------------ENQITLWKYPSM-KLVAELLGHTSRVLYLAL  439 (484)
T ss_pred             CcEecccccC---CceeeEEEcCCCCEEEEecCCC--------------CCcEEEEecccc-ceeeeecCCcceeEEEEE
Confidence            1111111111   235577788776 444442111              112356666432 334444444555677889


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecC
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      +|||+.+.+ ...+..|..|++-+
T Consensus       440 SPdg~~i~t-~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  440 SPDGETIVT-GAADETLRFWNLFD  462 (484)
T ss_pred             CCCCCEEEE-ecccCcEEeccccC
Confidence            999987654 44566676666543

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=80.19  E-value=13  Score=36.22  Aligned_cols=112  Identities=13%  Similarity=0.252  Sum_probs=61.2

Q ss_pred             eEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC---CCceEEEeCC
Q 016199           87 DLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA---YKGLLKISGN  162 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~---~~gl~~id~~  162 (393)
                      +|.++=|.+.||+... .|-|.+||..+..                ....  +|      .+|+|..   +.-+..+..+
T Consensus       316 DilISmDDRFLYvs~WLHGDirQYdIsDP~----------------n~kL--tg------Qi~lGG~i~~~s~vkvl~~e  371 (476)
T KOG0918|consen  316 DILISLDDRFLYVSNWLHGDIRQYDISDPK----------------NPKL--TG------QIFLGGSIQKGSPVKVLEEE  371 (476)
T ss_pred             eeEEeecCcEEEEEeeeecceeeeccCCCC----------------Ccce--EE------EEEECcEeecCCceEEeccc
Confidence            4566777788998876 5567788876532                1111  35      6777633   1113333323


Q ss_pred             c--eEEEeeccCCcccc-ccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          163 S--TVLLTDEAEGQKFK-LTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       163 g--~~~l~~~~~g~~~~-~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      +  .+.-+..+.|..++ .|.-+..+-|| +||+|++-.+..-++|--++.+..  +.+.++|-+|
T Consensus       372 ~~~~~~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G--~~miqidvdt  435 (476)
T KOG0918|consen  372 GLKKQPEALYVKGRKLRGGPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKG--SHMIQIDVDT  435 (476)
T ss_pred             cccCCCccceecCccccCCceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcC--ceEEEEeeec
Confidence            2  10001112233332 24567778899 899998766555556555555432  3567777643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=80.16  E-value=16  Score=33.76  Aligned_cols=68  Identities=25%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             cccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEEEcCCCCEEEEEeCCCC
Q 016199          179 TDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVVLSPDQTHLVYCETSMR  257 (393)
Q Consensus       179 ~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~  257 (393)
                      ++++.+-+|+.|..+- +                ..+|+..|+=.+... .++.-.-...|.++|+||- .+..+.+...
T Consensus       254 v~gvrIRpD~KIlATA-G----------------WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-~lmAaaskD~  315 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATA-G----------------WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-ELMAAASKDA  315 (323)
T ss_pred             ccceEEccCCcEEeec-c----------------cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-chhhhccCCc
Confidence            5688899999987763 2                234555555444332 2222223457899999995 4667777788


Q ss_pred             eEEEEEe
Q 016199          258 RCRKFYI  264 (393)
Q Consensus       258 ri~~~~~  264 (393)
                      ||..|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            8887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	393
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		6e-13
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-13
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		1e-11

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 26/238 (10%)
Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV--------------HNWINTGGR 129
            P    +D+ +K  YT  +DG   RV   + P    V               N  +   R
Sbjct: 11  APNSFTFDSTNKGFYTSVQDG---RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKR 67
Query: 130 PLGIAFANSDPDADRITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFKLTDGVDVAD- 186
           PL     +   +     + + D Y  L  +   G     L    +G  FK    V V   
Sbjct: 68  PLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 127
Query: 187 DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244
            G++YFTD S  Y  R  + I+D       GRL+ +DP TKET +L+ +L+   G  +S 
Sbjct: 128 TGIVYFTDVSTLYDDRGVQQIMDT--SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302
           D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E 
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 241

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 26/238 (10%)
Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV--------------HNWINTGGR 129
            P    +D+ +K  YT  +DG   RV   + P    V               N  +   R
Sbjct: 20  APNSFTFDSTNKGFYTSVQDG---RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKR 76
Query: 130 PLGIAFANSDPDADRITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFKLTDGVDVAD- 186
           PL     +   +     + + D Y  L  +   G     L    +G  FK    V V   
Sbjct: 77  PLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 136
Query: 187 DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244
            G++YFTD S  Y  R  + I+D  +    GRL+ +DP TKET +L+ +L+   G  +S 
Sbjct: 137 TGIVYFTDVSTLYDDRGVQQIMDTSD--KTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 194
Query: 245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302
           D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E 
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 250

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 26/238 (10%)
Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV--------------HNWINTGGR 129
            P    +D+ +K  YT  +DG   RV   + P    V               N  +   R
Sbjct: 20  APNSFTFDSTNKGFYTSVQDG---RVXKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKR 76
Query: 130 PLGIAFANSDPDADRITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFKLTDGVDVAD- 186
           PL     +   +       + D Y  L  +   G     L    +G  FK    V V   
Sbjct: 77  PLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 136
Query: 187 DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244
            G++YFTD S  Y  R  + I D  +    GRL  +DP TKET +L  +L+   G  +S 
Sbjct: 137 TGIVYFTDVSTLYDDRGVQQIXDTSD--KTGRLXKYDPSTKETTLLXKELHVPGGAEVSA 194
Query: 245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302
           D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E 
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 250

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	3e-70
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	2e-31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	2e-20
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	2e-15
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	3e-15
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	3e-13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	5e-10
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	3e-04
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	3e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	9e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  223 bits (568), Expect = 3e-70
 Identities = 66/335 (19%), Positives = 118/335 (35%), Gaps = 53/335 (15%)

Query: 74  SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDS----------------PAD 117
            E +       P    +D+ +K  YT  +DG + +    +S                  +
Sbjct: 10  KEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCEN 69

Query: 118 SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS--GNSTVLLTDEAEGQK 175
           S         GR   I++   +       + + D Y  L  +   G     L    +G  
Sbjct: 70  STDAEKRPLCGRTYDISYNLQNNQ-----LYIVDCYYHLSVVGSEGGHATQLATSVDGVP 124

Query: 176 FKLTDGVDV-ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL 234
           FK    V V    G++YFTD S  Y  R     +      GRL+ +DP TKET +L+ +L
Sbjct: 125 FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 184

Query: 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHY 294
           +   G  +S D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+
Sbjct: 185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHF 242

Query: 295 LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDP 354
            ++ + E             I+                         D  G  +     P
Sbjct: 243 WVSSSEELDGNMHGRVDPKGIK------------------------FDEFGNILEVIPLP 278

Query: 355 E---MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 386
                       +    LY G++ H  +  L  ++
Sbjct: 279 PPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  121 bits (304), Expect = 2e-31
 Identities = 39/324 (12%), Positives = 92/324 (28%), Gaps = 41/324 (12%)

Query: 79  YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV------------------ 120
            G+  G EDL     + L +      +   ++ +   +  ++                  
Sbjct: 46  KGIDNGSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIG 104

Query: 121 HNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI----SGNSTVLLTDEAEGQKF 176
           +    +   P GI+    D +   + ++        +++        ++L       +  
Sbjct: 105 NTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLL 164

Query: 177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF 236
              + +        Y T+            ++  G     +  + P   + +V+     F
Sbjct: 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDF 222

Query: 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-EGHYL 295
           ANG+ +SPD  ++   E    +   +           + +     L DNI  D   G   
Sbjct: 223 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLW 281

Query: 296 IALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE 355
           +         +      P        V+R      + +      +   +G          
Sbjct: 282 VGCHPNGMRIFFYDAENPPGS----EVLRI--QDILSEEPKVTVVYAENGTV-------- 327

Query: 356 MSLISSAIKIGDHLYCGSVHHRGI 379
           +   + A      L  G+V H+ +
Sbjct: 328 LQGSTVAAVYKGKLLIGTVFHKAL 351

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 90.2 bits (224), Expect = 2e-20
 Identities = 43/226 (19%), Positives = 79/226 (34%), Gaps = 21/226 (9%)

Query: 85  PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVH-NWINTGGRPLGIAFANSDPDAD 143
                Y    ++   G   G I R+ L       +        GG P G      D DA+
Sbjct: 27  KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC---DRDAN 83

Query: 144 RITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFK-LTDGVDVADDGMIYFTDASNKYY 200
           ++   VAD   GLL +   G    +   ++EG++ +   D      +G ++ T  +    
Sbjct: 84  QLF--VADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA-FDYEGNLWITAPA--GE 138

Query: 201 LREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPD----QTHLVYCETSM 256
           +          +  G +  F     +   + +   F NG+ +          L+  ET  
Sbjct: 139 VAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT 197

Query: 257 RRCRKFYIKG----KNAGRVEKFIETLPGLPDNIRYDGEGHYLIAL 298
           ++   + IKG    +N         T  G  D + +D + + L+A 
Sbjct: 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 14/189 (7%)

Query: 116 ADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQK 175
            D  V   ++      G A    D     +               G + +L+   A  + 
Sbjct: 74  EDGTVDVLLDATAFTNGNAV---DAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRL 130

Query: 176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY 235
               D + VA DG I+FTD                   +  +    P     +  ++DL 
Sbjct: 131 NSPNDLI-VARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-MADLD 188

Query: 236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA-------GRVEKFIETLPGLPDNIRY 288
             NG+  SPD+  L   +T  +      I             R   F     GLPD    
Sbjct: 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH--FASVPDGLPDGFCV 246

Query: 289 DGEGHYLIA 297
           D  G    +
Sbjct: 247 DRGGWLWSS 255

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 38/224 (16%), Positives = 71/224 (31%), Gaps = 29/224 (12%)

Query: 84  GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDAD 143
           G     +D   +L      +G I ++              ++    P  I       D  
Sbjct: 49  GL---NFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKANPAAIKI---HKDGR 99

Query: 144 RITMIVAD--AYKGLLKISGNSTVLLTDEAEGQKFK-LTDGVDVADDGMIYFTDASNKYY 200
                + D  +  G+   + N   L     +      + D V     G  YFTD      
Sbjct: 100 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV-FDSKGGFYFTD------ 152

Query: 201 LREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCR 260
                   +   P G +    P  +    ++ ++  ANG+ LS D+  L   ET+  R  
Sbjct: 153 -----FRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLH 207

Query: 261 KFYIK-----GKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299
           +  ++      +  G    +  T    PD+   D + +  +A+ 
Sbjct: 208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY 251

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 50/246 (20%)

Query: 116 ADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI---SGNSTVLLTDEAE 172
            D  +   ++      G        +     +  +   + L +     G    +  D  E
Sbjct: 57  DDGQLSPEMHPSHHQNGHCL-----NKQGHLIACSHGLRRLERQREPGGEWESIA-DSFE 110

Query: 173 GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232
           G+K    + V +A DG ++F+D +      E         P   +    P        + 
Sbjct: 111 GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-DGTLSAPIR 169

Query: 233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK--GKNAGRVEKFIETLPGLPDNIRYDG 290
           D    NG+   P    L+  +T      ++ +   G+   +        PG  D +R D 
Sbjct: 170 DRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQ-GVHFTVEPGKTDGLRVDA 227

Query: 291 EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAH 350
            G         +++  D                             GV ++  DG  +  
Sbjct: 228 GGLI-------WASAGD-----------------------------GVHVLTPDGDELGR 251

Query: 351 YYDPEM 356
              P+ 
Sbjct: 252 VLTPQT 257

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 59.2 bits (143), Expect = 5e-10
 Identities = 38/220 (17%), Positives = 66/220 (30%), Gaps = 30/220 (13%)

Query: 85  PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADR 144
            E+L       +  T  E G I  +T      D          G+  G+AF ++      
Sbjct: 34  LENLASAPDGTIFVTNHEVGEIVSIT-----PDGNQQIHATVEGKVSGLAFTSNG----- 83

Query: 145 ITMIVAD----AYKGLLKISGNSTV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKY 199
             ++       +   +  +  + TV  L    +       +G+    D      D+    
Sbjct: 84  -DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL---NGITPLSDTQYLTADSYRGA 139

Query: 200 YLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC 259
                   I   +P+G +    P+   +    S    ANG  L      L    T     
Sbjct: 140 IWL-----IDVVQPSGSIWLEHPMLARS-NSESVFPAANG--LKRFGNFLYVSNTEKMLL 191

Query: 260 RKFYIKGK-NAGRVEKFIETLPGLPDNIRYDGEGHYLIAL 298
            +  +      G  E F+E      D+  +D EG+   A 
Sbjct: 192 LRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGAT 229

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Length = 326

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 207 DIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI-- 264
                   G +        +   L +D+   N +  SPD T   + +T + R  +  +  
Sbjct: 153 GRKAETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA 210

Query: 265 -KGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIAL 298
             G   G+ E FI++  + G  D    D EGH   A 
Sbjct: 211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 36/230 (15%), Positives = 68/230 (29%), Gaps = 43/230 (18%)

Query: 83  KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDA 142
           K  + LLYD    L+Y        + +++ D      +    +  G P G+       D 
Sbjct: 212 KWSKILLYDPIRDLVYCSNWIS--EDISVIDRKTKLEIR-KTDKIGLPRGLLL---SKDG 265

Query: 143 DRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTD------GVDVADDG-MIYFTDA 195
             +   +A       + SG   + +    + +             +   +    IY +D 
Sbjct: 266 KEL--YIAQFSASNQE-SGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM 322

Query: 196 SNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHL-VYCET 254
                               ++  +D   K+ +  +      N + LSPD  +L V C  
Sbjct: 323 C-----------------CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRG 365

Query: 255 SMRRCRKFYIKGKNAGRV-------EKFIETLP--GLPDNIRYDGEGHYL 295
                  +  KG   G+V       +   E       P  +    +  YL
Sbjct: 366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYL 415

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 26/221 (11%), Positives = 58/221 (26%), Gaps = 36/221 (16%)

Query: 80  GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSD 139
               GP  +      K+  T  +   I  + L+        +       + + +      
Sbjct: 12  NQDTGPYGITVSDKGKVWITQHKANMISCINLDGK---ITEYPLPTPDAKVMCLTI---S 65

Query: 140 PDADRITMIVADAYKG-LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNK 198
            D     +   +     + +I+    +   +           G+    +G I+FT+ +  
Sbjct: 66  SDG---EVWFTENAANKIGRITKKGII--KEYTLPNPDSAPYGITEGPNGDIWFTEMN-- 118

Query: 199 YYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDLYFANGVVLSPDQTHLVYCETSMR 257
                            R+       K     L +   + + + L  D   L + E    
Sbjct: 119 ---------------GNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNN 162

Query: 258 RCRKFYIKGKNAGRVEKF-IETLPGLPDNIRYDGEGHYLIA 297
              +       +G + +F I T    P  I    +      
Sbjct: 163 AIGRI----TESGDITEFKIPTPASGPVGITKGNDDALWFV 199

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 17/168 (10%), Positives = 44/168 (26%), Gaps = 30/168 (17%)

Query: 80  GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSD 139
                P  +   + + L +T  ++  I R+T          +        P+GI      
Sbjct: 143 NKGSYPAFITLGSDNALWFTENQNNSIGRITNT---GKLEEYPLPTNAAAPVGITS---G 196

Query: 140 PDADRITMIVADAYKG-LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNK 198
            D   +     +     + +I+    +   D            +    +  I+FT+    
Sbjct: 197 ND-GAL--WFVEIMGNKIGRITTTGEISEYDIPTP--NARPHAITAGKNSEIWFTEWG-- 249

Query: 199 YYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVVLSPD 245
                            ++          +  + ++    +G+    D
Sbjct: 250 ---------------ANQIGRITNDNTIQEYQLQTENAEPHGITFGKD 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.96
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.96
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.92
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.92
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.89
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.87
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.84
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.82
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.77
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.76
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.73
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.71
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.68
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.67
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.66
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.63
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.62
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.61
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.6
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.59
3ott_A	758	Two-component system sensor histidine kinase; beta	99.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.59
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.59
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.54
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.53
3ott_A	758	Two-component system sensor histidine kinase; beta	99.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.52
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.5
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.47
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.47
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.46
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.46
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.43
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.42
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.39
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.38
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.37
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.37
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.35
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.31
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.31
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.3
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.3
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.26
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.24
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.21
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.18
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.15
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.15
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.15
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.13
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.12
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.09
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.09
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.09
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.08
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.08
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.07
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.06
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.06
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.06
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.05
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.03
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.01
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.98
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.98
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.97
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.97
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.94
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.93
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.93
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.93
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.93
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.91
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.91
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.91
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.91
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.9
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.88
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.85
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.84
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.84
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.83
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.82
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.82
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.81
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.8
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.8
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.78
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.78
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.78
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.77
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.77
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.77
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.75
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.75
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.74
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.74
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.73
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.73
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.7
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.7
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.69
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.69
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.69
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.69
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.68
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.67
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.66
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.66
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.66
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.66
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.65
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.65
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.65
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.64
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.64
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.62
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.61
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.61
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.61
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.61
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.6
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.6
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.59
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.59
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.59
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.58
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.57
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.57
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.56
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.55
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.55
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.54
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.51
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.51
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.49
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.48
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.48
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.47
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.46
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.46
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.46
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.44
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.44
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.42
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.42
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.41
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.4
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.4
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.39
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.36
3jro_A	753	Fusion protein of protein transport protein SEC13	98.35
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.35
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.33
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.33
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.31
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.31
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.3
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.3
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.29
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.29
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.28
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.27
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.27
2pm7_B	297	Protein transport protein SEC13, protein transport	98.25
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.23
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.21
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.21
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.21
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.21
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.2
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.2
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.2
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.19
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.19
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.14
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.11
2pm7_B	297	Protein transport protein SEC13, protein transport	98.1
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.1
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.09
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.09
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.07
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.05
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.03
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.03
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.0
3jro_A	753	Fusion protein of protein transport protein SEC13	97.97
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.95
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.93
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.91
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.9
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.87
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.85
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.85
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.84
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.8
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.78
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.76
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.76
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.72
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.7
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.67
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.62
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.62
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.58
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.55
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.48
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.38
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.38
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.37
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.36
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.32
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.3
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.27
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.26
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.14
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.12
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.09
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.05
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.95
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.94
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.91
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.89
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.82
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.8
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.52
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.51
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.43
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.41
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.1
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.35
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.34
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	95.33
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.21
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	95.11
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	94.82
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.49
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	94.37
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	94.06
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	93.99
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	93.39
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	93.17
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.45
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.26
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.06
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.51
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.88
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	88.65
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	88.21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.95
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	84.79
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	83.5
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	82.03
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	80.78

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=6.2e-32  Score=257.42  Aligned_cols=272  Identities=23%  Similarity=0.391  Sum_probs=216.0

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec--------------------CCCceeeeEECC-
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--------------------TGGRPLGIAFAN-  137 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~--------------------~~~~p~gl~~d~-  137 (393)
                      .|.+.+||++++|++|+.+|++..+++|++++++++.    +..+..                    ..++|.+|++++ 
T Consensus        15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~   90 (322)
T 2fp8_A           15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG----FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ   90 (322)
T ss_dssp             ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTC----EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred             CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc----eEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence            4567899999999998779999999999999987654    444431                    124699999997 


Q ss_pred             CCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCC
Q 016199          138 SDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPN  214 (393)
Q Consensus       138 ~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~  214 (393)
                      +|      +|||++...+|+++++++  .+.+.....+.++.+++++++|+ +|++||+|...++...++...+.+....
T Consensus        91 ~g------~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  164 (322)
T 2fp8_A           91 NN------QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT  164 (322)
T ss_dssp             TT------EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred             CC------cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence            89      999999888999999875  45554444455567799999999 9999999987555444555555666677


Q ss_pred             cEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCE
Q 016199          215 GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHY  294 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~l  294 (393)
                      ++|++||+++++.+.+...+..|+||++++||+.+||+++..++|++|++++...+..+.+.+ +++ |+|+++|++|++
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHF  242 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCE
T ss_pred             ceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCE
Confidence            899999999888887777788999999999999999999999999999998765566666663 677 999999999999


Q ss_pred             EEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC---CCccEEEEEeCCEEEE
Q 016199          295 LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYC  371 (393)
Q Consensus       295 wva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~---~~~~~~~~~~~g~Lyi  371 (393)
                      ||+....+..+                        +.....+.|.++|++|+++..+..+.   +..++.+...+++||+
T Consensus       243 ~va~~~~~~~~------------------------~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v  298 (322)
T 2fp8_A          243 WVSSSEELDGN------------------------MHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYI  298 (322)
T ss_dssp             EEEEEEETTSS------------------------TTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEE
T ss_pred             EEEecCccccc------------------------ccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEE
Confidence            99987533211                        00111256999999999999998765   4556666678899999


Q ss_pred             EecCCCeEEEEeCCC
Q 016199          372 GSVHHRGILHLDVNQ  386 (393)
Q Consensus       372 gs~~~~~i~~~~~~~  386 (393)
                      ++...++|.++++++
T Consensus       299 ~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          299 GTLFHGSVGILVYDK  313 (322)
T ss_dssp             ECSSCSEEEEEEC--
T ss_pred             eecCCCceEEEeccc
Confidence            999999999999864

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.96  E-value=2.4e-27  Score=227.82  Aligned_cols=279  Identities=17%  Similarity=0.207  Sum_probs=199.1

Q ss_pred             CceEEecCccCCCceEEEecCCCEEEEEe-------------cCCeEEEEEcCCCCCcceeeeeec-------CCCceee
Q 016199           73 GSEKVGYGVLKGPEDLLYDAHSKLIYTGC-------------EDGWIKRVTLNDSPADSLVHNWIN-------TGGRPLG  132 (393)
Q Consensus        73 ~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~-------------~~g~I~~~~~~~~~~~~~~~~~~~-------~~~~p~g  132 (393)
                      .++.+ ++...+||+|+++++| ++|+++             .+|+|+++++++....  .+.+..       ...+|+|
T Consensus        41 ~C~~i-~~~~~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~--~~~l~~~g~~~~~~~f~PhG  116 (355)
T 3sre_A           41 NCNLV-KGIDNGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA--VSELEIIGNTLDISSFNPHG  116 (355)
T ss_dssp             CEEEC-TTCCSCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCC--EEECEEECSSCCGGGCCEEE
T ss_pred             CCEEe-CCCCCCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc--eEEEEccCCCCCcCceeeee
Confidence            45555 5545899999999987 699997             5889999998743211  222222       2358999


Q ss_pred             eEECC--CCCCCCceEEEEEeCCCc-----eEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhh
Q 016199          133 IAFAN--SDPDADRITMIVADAYKG-----LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREY  204 (393)
Q Consensus       133 l~~d~--~G~~~~~~~L~v~~~~~g-----l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~  204 (393)
                      |.+..  +|    +.+|||+++..+     |+++++++ ...+....++.+++.+|+++++++|.+|+++...-.....-
T Consensus       117 i~~~~d~dg----~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          117 ISTFIDDDN----TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             EEEEECTTC----CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eEEEECCCC----cEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            99854  33    227999988743     88899876 55555667788889999999999999999976321100000


Q ss_pred             eehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeeccCCCCC
Q 016199          205 ILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK-NAGRVEKFIETLPGLP  283 (393)
Q Consensus       205 ~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~-~~~~~~~~~~~l~g~P  283 (393)
                      ..+..++...|+||+||+.  +.+.+.+++.+||||+++||++.+||+++..++|++|+++++ +.+..+.+  .+++.|
T Consensus       193 ~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~P  268 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLV  268 (355)
T ss_dssp             HHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEE
T ss_pred             cchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCC
Confidence            1222344567899999984  677788899999999999999999999999999999999743 23334455  457899


Q ss_pred             CeEEECC-CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEEC----CCCcEEEEeeC-CC-C
Q 016199          284 DNIRYDG-EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVD----LDGKPIAHYYD-PE-M  356 (393)
Q Consensus       284 ~~i~~d~-~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d----~~g~~~~~~~d-~~-~  356 (393)
                      ||+++|+ +|++|+|+.......+.+   .                 |...+...|.++.    .++++.+.|.| ++ .
T Consensus       269 DGi~vD~e~G~lwva~~~~g~~v~~~---~-----------------P~~~~~s~v~rI~~~~~~~~~v~~v~~ddG~~l  328 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHPNGMRIFFY---D-----------------AENPPGSEVLRIQDILSEEPKVTVVYAENGTVL  328 (355)
T ss_dssp             EEEEECTTTCCEEEEEESCHHHHHSC---C-----------------TTSCCCEEEEEEECTTSSSCEEEEEEEECSSSC
T ss_pred             ceEEEeCCCCcEEEEecCCceEEEEE---C-----------------CCCCCCCEEEEEEccCCCCcEEEEEEEcCCCEE
Confidence            9999999 599999875332211100   1                 1111234578886    46788888876 33 6


Q ss_pred             CccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          357 SLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       357 ~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                      +..|.+.+.+|+||+|++..+ +..|++
T Consensus       329 ~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          329 QGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             CSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             EeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence            788888899999999999888 555553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.96  E-value=9.4e-27  Score=219.85  Aligned_cols=260  Identities=17%  Similarity=0.203  Sum_probs=196.0

Q ss_pred             CceEEecCccCCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe
Q 016199           73 GSEKVGYGVLKGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        73 ~~~~l~~g~~~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      ..+++..+ ...+|+++++++|+ ++|++..+++|++++++ +.    ...+....+.|.+++++++|      +||+++
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~----~~~~~~~~~~~~gl~~d~dG------~l~v~~  103 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT----VDVLLDATAFTNGNAVDAQQ------RLVHCE  103 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC----EEEEEESCSCEEEEEECTTS------CEEEEE
T ss_pred             ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC----EEEEeCCCCccceeeECCCC------CEEEEE
Confidence            45667676 48899999999998 55666678899999985 33    55555556789999999999      999998


Q ss_pred             CC-CceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          152 AY-KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       152 ~~-~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                      .. .+|.+++++| .+.+.....+.++..+++++++++|++||+|....................++|+++|+++++.+.
T Consensus       104 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          104 HGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             TTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             CCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence            75 6799999888 666655555666677999999999999999863211000000000011235789999998888877


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCC-----CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcch
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSM-----RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFST  304 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~-----~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~  304 (393)
                      +. ++..|||+++++||+.||++++..     ++|++|++++......+.+.+...+.|+++++|++|++|++..     
T Consensus       184 ~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-----  257 (305)
T 3dr2_A          184 MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG-----  257 (305)
T ss_dssp             EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-----
T ss_pred             Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC-----
Confidence            77 788899999999999999999874     7999999875433334455544567899999999999999874     


Q ss_pred             hhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCCCeEEEEe
Q 016199          305 YWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHHRGILHLD  383 (393)
Q Consensus       305 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~~~i~~~~  383 (393)
                                                     ++|.+++++|+.+..+..+. ...+++. +++++||+++  ...|.+++
T Consensus       258 -------------------------------~gv~~~~~~g~~~~~~~~~~~~~~~~f~-~d~~~L~it~--~~~l~~~~  303 (305)
T 3dr2_A          258 -------------------------------TGVCVFDSDGQLLGHIPTPGTASNCTFD-QAQQRLFITG--GPCLWMLP  303 (305)
T ss_dssp             -------------------------------SEEEEECTTSCEEEEEECSSCCCEEEEC-TTSCEEEEEE--TTEEEEEE
T ss_pred             -------------------------------CcEEEECCCCCEEEEEECCCceeEEEEe-CCCCEEEEEc--CCeEEEEE
Confidence                                           46999999999999988765 3333332 4557999995  57899987


Q ss_pred             C
Q 016199          384 V  384 (393)
Q Consensus       384 ~  384 (393)
                      +
T Consensus       304 ~  304 (305)
T 3dr2_A          304 L  304 (305)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.94  E-value=2.6e-24  Score=201.47  Aligned_cols=260  Identities=16%  Similarity=0.242  Sum_probs=190.3

Q ss_pred             eEEecCccCCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199           75 EKVGYGVLKGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY  153 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~  153 (393)
                      +.+..+ ...||+++++++|+ .+|+++.+++|++++++++     ...+......|.+++++++|      +||+++..
T Consensus        21 ~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg------~l~v~~~~   88 (296)
T 3e5z_A           21 RRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQG------HLIACSHG   88 (296)
T ss_dssp             EEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTC------CEEEEETT
T ss_pred             EEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCC------cEEEEecC
Confidence            455454 58899999999998 6777778899999998864     34454455779999999999      99999875


Q ss_pred             -CceEEEeC-Cc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhe-ehhcccCCCcEEEEEeCCCCeEEE
Q 016199          154 -KGLLKISG-NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYI-LDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       154 -~gl~~id~-~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~-~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                       .+|.++++ +| .+.+.....+.+...+++++++++|++|++|+..... ..+. .........++|++++++ ++.+.
T Consensus        89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~-~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (296)
T 3e5z_A           89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGID-KPEEGYGGEMELPGRWVFRLAPD-GTLSA  166 (296)
T ss_dssp             TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHH-CGGGSSCCCCCSSSCEEEEECTT-SCEEE
T ss_pred             CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccc-cccccccccccCCCcEEEEECCC-CCEEE
Confidence             67999998 55 5444433344455678999999999999998531100 0000 000011234689999998 77777


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC-CC-cceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhh
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK-NA-GRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWD  307 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~-~~-~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~  307 (393)
                      +...+..|+++++++||+.+ ++++..++|++|++++. +. .....+ ....+.|+++++|++|++|++..        
T Consensus       167 ~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~--------  236 (296)
T 3e5z_A          167 PIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAG--------  236 (296)
T ss_dssp             EECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEET--------
T ss_pred             eecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcC--------
Confidence            77788899999999999888 99999999999998632 12 223444 44567899999999999999982        


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCC-CccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEM-SLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~-~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                                                  ++|.++|++|+.+..+..+.. ..+++..++++.||+++  .+.|.++++++
T Consensus       237 ----------------------------~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t--~~~l~~~~~~~  286 (296)
T 3e5z_A          237 ----------------------------DGVHVLTPDGDELGRVLTPQTTSNLCFGGPEGRTLYMTV--STEFWSIETNV  286 (296)
T ss_dssp             ----------------------------TEEEEECTTSCEEEEEECSSCCCEEEEESTTSCEEEEEE--TTEEEEEECSC
T ss_pred             ----------------------------CeEEEECCCCCEEEEEECCCCceeEEEECCCCCEEEEEc--CCeEEEEEccc
Confidence                                        579999999999988876553 22222112346899995  57999999865


Q ss_pred             CC
Q 016199          387 HP  388 (393)
Q Consensus       387 ~~  388 (393)
                      ..
T Consensus       287 ~~  288 (296)
T 3e5z_A          287 RG  288 (296)
T ss_dssp             CB
T ss_pred             cc
Confidence            43

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.92  E-value=2.6e-23  Score=195.53  Aligned_cols=247  Identities=15%  Similarity=0.101  Sum_probs=179.0

Q ss_pred             EEecCccCCCceEEEecCCCEEEE-EecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC
Q 016199           76 KVGYGVLKGPEDLLYDAHSKLIYT-GCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK  154 (393)
Q Consensus        76 ~l~~g~~~~Pe~ia~d~~g~~L~~-~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~  154 (393)
                      .+.......+|+++|+++++.||+ +..+++|++++++++.    ...+. ....|.+++++++|      +||++. ..
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~----~~~~~-~~~~~~~i~~~~dG------~l~v~~-~~   73 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ----VQRVT-MDAPVSSVALRQSG------GYVATI-GT   73 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEEEE-CSSCEEEEEEBTTS------SEEEEE-TT
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc----EEEEe-CCCceEEEEECCCC------CEEEEE-CC
Confidence            333444578999999996555555 4557899999998765    54443 35679999999999      899996 67


Q ss_pred             ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          155 GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       155 gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      +|+++|+++  .+.+.....+.+...++++++|++|++|+++.......      .......++|++++++ ++...+..
T Consensus        74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~------~~~~~~~~~l~~~d~~-g~~~~~~~  146 (297)
T 3g4e_A           74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP------AVLERHQGALYSLFPD-HHVKKYFD  146 (297)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT------TBCCTTCEEEEEECTT-SCEEEEEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc------ccccCCCcEEEEEECC-CCEEEEee
Confidence            999999864  55554433344455688999999999999974321100      0011345789999986 56666677


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeec--cCCCCCCeEEECCCCCEEEEEecCcchhhhh
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK--NAGRVEKFIE--TLPGLPDNIRYDGEGHYLIALATEFSTYWDL  308 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~--~~~~~~~~~~--~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~  308 (393)
                      .+..|||+++++|++.+|++++..++|++|+++..  .....+.+.+  ..++.|+++++|++|++|++....       
T Consensus       147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-------  219 (297)
T 3g4e_A          147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-------  219 (297)
T ss_dssp             EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-------
T ss_pred             ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-------
Confidence            78889999999999999999999999999998521  1222334432  234689999999999999999854       


Q ss_pred             hhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCC--CccEEEEEeCCEEEEEecC
Q 016199          309 AYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEM--SLISSAIKIGDHLYCGSVH  375 (393)
Q Consensus       309 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~--~~~~~~~~~~g~Lyigs~~  375 (393)
                                                 +.|.++|++ |+.+..+..+..  ..+++..++.++||+++..
T Consensus       220 ---------------------------~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          220 ---------------------------GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             ---------------------------TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             ---------------------------CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence                                       469999997 999988887642  2222221455799999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.92  E-value=7.6e-23  Score=192.05  Aligned_cols=262  Identities=18%  Similarity=0.290  Sum_probs=185.9

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEE--------ecCCeEEEEEcCCCCCcceeeeeec-----CCCceeeeEECCC-CC
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTG--------CEDGWIKRVTLNDSPADSLVHNWIN-----TGGRPLGIAFANS-DP  140 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~--------~~~g~I~~~~~~~~~~~~~~~~~~~-----~~~~p~gl~~d~~-G~  140 (393)
                      +.+.. .+..|++++++++|+ ||++        +.+++|+++++.++.    ...+..     ....|.+++++++ | 
T Consensus        11 ~~~~~-~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~i~~~~~~g-   83 (314)
T 1pjx_A           11 TKVTE-DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGK----KTVICKPEVNGYGGIPAGCQCDRDAN-   83 (314)
T ss_dssp             EEEEC-CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCC----EEEEECCEETTEECCEEEEEECSSSS-
T ss_pred             hhhhc-cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCc----EEEEEecccCCCCCCCceEEEecCCC-
Confidence            34434 468999999999986 7776        568899999977665    554432     2357999999999 9 


Q ss_pred             CCCceEEEEEeCCCceEEEeCCc-eEEE-eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEE
Q 016199          141 DADRITMIVADAYKGLLKISGNS-TVLL-TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLL  218 (393)
Q Consensus       141 ~~~~~~L~v~~~~~gl~~id~~g-~~~l-~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~  218 (393)
                           +||+++...+|++++.++ ...+ .....+.+...+++++++++|++|+++........++..  ......++|+
T Consensus        84 -----~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~--~~~~~~~~l~  156 (314)
T 1pjx_A           84 -----QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR--SMQEKFGSIY  156 (314)
T ss_dssp             -----EEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB--TTSSSCEEEE
T ss_pred             -----cEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc--cccCCCCeEE
Confidence                 999998877999999877 4433 322223344568899999999999998542110001100  1112347899


Q ss_pred             EEeCCCCeEEEEecCccCCCcEEEc----CCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeeccCC----CCCCeEEEC
Q 016199          219 SFDPVTKETKVLVSDLYFANGVVLS----PDQTHLVYCETSMRRCRKFYIKGK-NAGRVEKFIETLP----GLPDNIRYD  289 (393)
Q Consensus       219 ~~d~~t~~~~~~~~~l~~~ngi~~s----~dg~~l~v~~~~~~ri~~~~~~g~-~~~~~~~~~~~l~----g~P~~i~~d  289 (393)
                      ++|++ ++.+.+......|++++++    +||+.+|++++..++|++|++++. +....+.+. ..+    +.|+++++|
T Consensus       157 ~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~i~~d  234 (314)
T 1pjx_A          157 CFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHEGGADGMDFD  234 (314)
T ss_dssp             EECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSSCEEEEEEEB
T ss_pred             EECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-ECCCCCCCCCCceEEC
Confidence            99987 6776666667789999999    999889999998999999998621 111222332 222    568999999


Q ss_pred             CCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEEEeCC-
Q 016199          290 GEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIKIGD-  367 (393)
Q Consensus       290 ~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~~~g-  367 (393)
                      ++|++|++....                                  ++|.++|++ |+.+..+..+...........+| 
T Consensus       235 ~~G~l~v~~~~~----------------------------------~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          235 EDNNLLVANWGS----------------------------------SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             TTCCEEEEEETT----------------------------------TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             CCCCEEEEEcCC----------------------------------CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCC
Confidence            999999998644                                  579999998 88877776553222222233344 


Q ss_pred             EEEEEecCCCeEEEEeCCC
Q 016199          368 HLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       368 ~Lyigs~~~~~i~~~~~~~  386 (393)
                      +||+++...+.|.+++++.
T Consensus       281 ~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          281 TIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEETTTTEEEEEECSS
T ss_pred             EEEEEeCCCCeEEEEeCCC
Confidence            5999988888999999753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.89  E-value=2.6e-20  Score=177.62  Aligned_cols=245  Identities=18%  Similarity=0.188  Sum_probs=176.4

Q ss_pred             CceEEecCccCCCceEEEecCCCEEE-EEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe
Q 016199           73 GSEKVGYGVLKGPEDLLYDAHSKLIY-TGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        73 ~~~~l~~g~~~~Pe~ia~d~~g~~L~-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      ..+.+.......+|+++++++++.+| ++..+++|++++++++.    ...+. ....+.+++++++|      ++|++.
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~----~~~~~-~~~~v~~i~~~~dg------~l~v~~  107 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGR----KTVHA-LPFMGSALAKISDS------KQLIAS  107 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE----EEEEE-CSSCEEEEEEEETT------EEEEEE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc----EEEEE-CCCcceEEEEeCCC------eEEEEE
Confidence            35666665567789999999755554 55567899999998765    44443 24678999999999      999996


Q ss_pred             CCCceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          152 AYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       152 ~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                       ..||++++.++  .+.+.....+.+...++++++|++|++|+++....           +....++|++++  +++.+.
T Consensus       108 -~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~--~g~~~~  173 (326)
T 2ghs_A          108 -DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA--KGKVTK  173 (326)
T ss_dssp             -TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE--TTEEEE
T ss_pred             -CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe--CCcEEE
Confidence             67899999754  44443222223334578999999999999863210           112457899999  477776


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec--CC-CCcceeeeec--cCCCCCCeEEECCCCCEEEEEecCcch
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK--GK-NAGRVEKFIE--TLPGLPDNIRYDGEGHYLIALATEFST  304 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~--g~-~~~~~~~~~~--~l~g~P~~i~~d~~G~lwva~~~~r~~  304 (393)
                      +..+...++++++++||+.+|++++..++|++|+++  +. .....+.+..  ...+.|+++++|++|++|++....   
T Consensus       174 ~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~---  250 (326)
T 2ghs_A          174 LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE---  250 (326)
T ss_dssp             EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT---
T ss_pred             eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC---
Confidence            666667899999999999999999988999999985  21 2222233332  234679999999999999998743   


Q ss_pred             hhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEE--EeCCEEEEEecCC
Q 016199          305 YWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAI--KIGDHLYCGSVHH  376 (393)
Q Consensus       305 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~--~~~g~Lyigs~~~  376 (393)
                                                     ++|.++|++|+.+..+..+.....+...  +++++||+++...
T Consensus       251 -------------------------------~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          251 -------------------------------GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             -------------------------------TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             -------------------------------CEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence                                           5799999999998888766422222222  2447899998765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.88  E-value=2.3e-20  Score=177.08  Aligned_cols=246  Identities=16%  Similarity=0.220  Sum_probs=177.0

Q ss_pred             ccCCCceEEEecCCCEEE-EEecCCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCCC----
Q 016199           81 VLKGPEDLLYDAHSKLIY-TGCEDGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAYK----  154 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~-~~~~~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~----  154 (393)
                      ....|++++++++|+ || ++..+++|++++++++.    ...+. .....|.+++++++|      ++|+++...    
T Consensus        43 ~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~i~~~~dg------~l~v~~~~~~~~~  111 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKE----IKRPFVSHKANPAAIKIHKDG------RLFVCYLGDFKST  111 (333)
T ss_dssp             SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCC----EEEEEECSSSSEEEEEECTTS------CEEEEECTTSSSC
T ss_pred             cCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCc----EEEEeeCCCCCcceEEECCCC------cEEEEeCCCCCCC
Confidence            357899999999998 66 56678899999988765    55443 334679999999999      999998654    


Q ss_pred             -ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe
Q 016199          155 -GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV  231 (393)
Q Consensus       155 -gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~  231 (393)
                       +|++++.++  .+.+....  .....+++++++++|++|+++....           .....++|+++|+++++.+.+.
T Consensus       112 ~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~  178 (333)
T 2dg1_A          112 GGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPII  178 (333)
T ss_dssp             CEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEE
T ss_pred             ceEEEEeCCCCEEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEee
Confidence             799999877  33222111  1224578999999999999974210           0123578999999887777766


Q ss_pred             cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC--CCcce--eeeeccCC--CCCCeEEECCCCCEEEEEecCcchh
Q 016199          232 SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK--NAGRV--EKFIETLP--GLPDNIRYDGEGHYLIALATEFSTY  305 (393)
Q Consensus       232 ~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~--~~~~~--~~~~~~l~--g~P~~i~~d~~G~lwva~~~~r~~~  305 (393)
                      .....++++++++||+.+|++++..++|++|+++..  .....  ..+. ..+  ..|+++++|++|++|++....    
T Consensus       179 ~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~----  253 (333)
T 2dg1_A          179 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-YFTGHEGPDSCCIDSDDNLYVAMYGQ----  253 (333)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-ECCSSSEEEEEEEBTTCCEEEEEETT----
T ss_pred             cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-ecCCCCCCCceEECCCCCEEEEEcCC----
Confidence            666779999999999999999988899999998532  11111  1111 122  368999999999999998643    


Q ss_pred             hhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCC------CccEEEE-EeCCEEEEEecCC--
Q 016199          306 WDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEM------SLISSAI-KIGDHLYCGSVHH--  376 (393)
Q Consensus       306 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~------~~~~~~~-~~~g~Lyigs~~~--  376 (393)
                                                    ++|.++|++|+.+..+..+..      ....... +++++||+++...  
T Consensus       254 ------------------------------~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~  303 (333)
T 2dg1_A          254 ------------------------------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEM  303 (333)
T ss_dssp             ------------------------------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGG
T ss_pred             ------------------------------CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCC
Confidence                                          579999999998888875431      1122222 3346999998663  


Q ss_pred             ---CeEEEEeCC
Q 016199          377 ---RGILHLDVN  385 (393)
Q Consensus       377 ---~~i~~~~~~  385 (393)
                         ..|.++++.
T Consensus       304 ~~~~~l~~~~~~  315 (333)
T 2dg1_A          304 GGGSMLYTVNGF  315 (333)
T ss_dssp             TCCEEEEEEECS
T ss_pred             CCCceEEEEecc
Confidence               378888864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.88  E-value=5.7e-20  Score=170.70  Aligned_cols=241  Identities=17%  Similarity=0.182  Sum_probs=177.4

Q ss_pred             cCccCCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecC------CCceeeeEE-CCCCCCCCceEEEEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINT------GGRPLGIAF-ANSDPDADRITMIVA  150 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~------~~~p~gl~~-d~~G~~~~~~~L~v~  150 (393)
                      .+.+..|.+++++++|+ +|++. .+++|.+|++++..    ...+...      ...|.++++ +++|      +||++
T Consensus        26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~g~~----~~~~~~~~~~~~~~~~p~~i~~~~~~g------~l~v~   94 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNSG------DIIVT   94 (286)
T ss_dssp             TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTTT------EEEEE
T ss_pred             CCccCCCceEEECCCCC-EEEEECCCCEEEEECCCCcE----EEEecccCCCcccccCceEEEEEcCCC------eEEEE
Confidence            45678899999999997 77764 57899999987543    4444221      146899999 6889      99999


Q ss_pred             eC--CCceEEEeCCc-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe
Q 016199          151 DA--YKGLLKISGNS-T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE  226 (393)
Q Consensus       151 ~~--~~gl~~id~~g-~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~  226 (393)
                      +.  ...|.+++.+| . ..+.    ......+++++++++|++|+++                 ...++|++||+++..
T Consensus        95 ~~~~~~~i~~~d~~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~-----------------~~~~~i~~~~~~g~~  153 (286)
T 1q7f_A           95 ERSPTHQIQIYNQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVE-----------------CKVMRVIIFDQNGNV  153 (286)
T ss_dssp             ECGGGCEEEEECTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEE-----------------TTTTEEEEECTTSCE
T ss_pred             cCCCCCEEEEECCCCcEEEEec----CccCCCceEEEEeCCCCEEEEE-----------------CCCCEEEEEcCCCCE
Confidence            85  56799999877 2 2221    1223457899999999999997                 345689999987655


Q ss_pred             EEEEe--cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCeEEECCCCCEEEEEecCcc
Q 016199          227 TKVLV--SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE-TLPGLPDNIRYDGEGHYLIALATEFS  303 (393)
Q Consensus       227 ~~~~~--~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-~l~g~P~~i~~d~~G~lwva~~~~r~  303 (393)
                      ...+.  ..+..|+++++++|| .+|+++...++|.+|+.++..   ...+.. .....|.++++|++|++|++....  
T Consensus       154 ~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~--  227 (286)
T 1q7f_A          154 LHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHN--  227 (286)
T ss_dssp             EEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSS--
T ss_pred             EEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCCC--
Confidence            55553  345679999999998 599999989999999976531   222321 111468999999999999998643  


Q ss_pred             hhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCc-eEEEECCCCcEEEEeeCCC-C-CccEEEEEeCCEEEEEecCCCeEE
Q 016199          304 TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSS-GVFIVDLDGKPIAHYYDPE-M-SLISSAIKIGDHLYCGSVHHRGIL  380 (393)
Q Consensus       304 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~v~~~d~~g~~~~~~~d~~-~-~~~~~~~~~~g~Lyigs~~~~~i~  380 (393)
                                                      + .|.+++++|+.+..+.... . .....+...+|+||+++ .++.|.
T Consensus       228 --------------------------------~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~~~~v~  274 (286)
T 1q7f_A          228 --------------------------------NFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS-KDYRLY  274 (286)
T ss_dssp             --------------------------------SCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEEE
T ss_pred             --------------------------------CEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEEC-CCCeEE
Confidence                                            3 6999999999888876533 2 22344455679999997 478899


Q ss_pred             EEeCCCCCCC
Q 016199          381 HLDVNQHPAR  390 (393)
Q Consensus       381 ~~~~~~~~~~  390 (393)
                      .++.....|+
T Consensus       275 v~~~~~~~pv  284 (286)
T 1q7f_A          275 IYRYVQLAPV  284 (286)
T ss_dssp             EEECSCCCCT
T ss_pred             EEEccccccc
Confidence            9998777665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.87  E-value=8.1e-20  Score=172.49  Aligned_cols=222  Identities=16%  Similarity=0.147  Sum_probs=160.8

Q ss_pred             CCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-Cc--eEE
Q 016199           83 KGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KG--LLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~g--l~~  158 (393)
                      ..||+++++++|+ ||+++ .+++|++++++++     ...+....+.|.+|+++++|      +|||++.. .+  |++
T Consensus        32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-----~~~~~~~~~~p~gia~~~dG------~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-----QQIHATVEGKVSGLAFTSNG------DLVATGWNADSIPVVS   99 (306)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-----EEEEEECSSEEEEEEECTTS------CEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-----eEEEEeCCCCceeEEEcCCC------cEEEEeccCCcceEEE
Confidence            6899999999987 77776 5789999998864     33333446789999999999      99999864 23  888


Q ss_pred             EeC-Cc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE------
Q 016199          159 ISG-NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL------  230 (393)
Q Consensus       159 id~-~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~------  230 (393)
                      ++. +| .+.+....   ...++++++..+++.+|++|                 ...++||++|+.+++.+..      
T Consensus       100 ~d~~~g~~~~~~~~~---~~~~~~g~~~~~~~~~~v~d-----------------~~~g~i~~~d~~~~~~~v~~~~~~~  159 (306)
T 2p4o_A          100 LVKSDGTVETLLTLP---DAIFLNGITPLSDTQYLTAD-----------------SYRGAIWLIDVVQPSGSIWLEHPML  159 (306)
T ss_dssp             EECTTSCEEEEEECT---TCSCEEEEEESSSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECGGG
T ss_pred             EcCCCCeEEEEEeCC---CccccCcccccCCCcEEEEE-----------------CCCCeEEEEeCCCCcEeEEEECCcc
Confidence            874 45 44443321   13457888888888899997                 3457899999976543322      


Q ss_pred             -----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcch
Q 016199          231 -----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK-NAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFST  304 (393)
Q Consensus       231 -----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~-~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~  304 (393)
                           ...+..||||  ++|++.+|++++.+++|++|++++. +.+..+.+.+ . ..|+++++|++|++||+....   
T Consensus       160 ~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-~~P~gi~vd~dG~l~va~~~~---  232 (306)
T 2p4o_A          160 ARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-TNIDDFAFDVEGNLYGATHIY---  232 (306)
T ss_dssp             SCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-CCCSSEEEBTTCCEEEECBTT---
T ss_pred             ccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-CCCCCeEECCCCCEEEEeCCC---
Confidence                 1235678998  8899999999999999999999752 2334455543 2 469999999999999998754   


Q ss_pred             hhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEE--eeCCCCCccEEE-E----EeCCEEEEEecC
Q 016199          305 YWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAH--YYDPEMSLISSA-I----KIGDHLYCGSVH  375 (393)
Q Consensus       305 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~--~~d~~~~~~~~~-~----~~~g~Lyigs~~  375 (393)
                                                     +.|.+++++|+....  +..+ ....+.+ .    +++++||+++..
T Consensus       233 -------------------------------~~V~~~~~~G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          233 -------------------------------NSVVRIAPDRSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             -------------------------------CCEEEECTTCCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -------------------------------CeEEEECCCCCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence                                           569999999987543  3333 2222333 3    345899999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.86  E-value=7.9e-20  Score=167.78  Aligned_cols=238  Identities=16%  Similarity=0.193  Sum_probs=169.7

Q ss_pred             CCceEEEecCCCEEEE-E-ecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199           84 GPEDLLYDAHSKLIYT-G-CEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~-~-~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      .|++++++++|+ ||+ + ..+++|++++.++..    ...+.. ....|.+|+++++|      +||+++..++|++++
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~~~~g------~l~v~~~~~~i~~~d   93 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTG----TTVLPFNGLYQPQGLAVDGAG------TVYVTDFNNRVVTLA   93 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTC------CEEEEETTTEEEEEC
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcc----cceEeeCCcCCcceeEECCCC------CEEEEcCCCEEEEEe
Confidence            999999999997 888 7 457899999876543    332221 22579999999999      999998866799999


Q ss_pred             CCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccCCC
Q 016199          161 GNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYFAN  238 (393)
Q Consensus       161 ~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~~n  238 (393)
                      +++ ..... ..  ..+..+++++++++|++|+++                 ...++|++++..+...... ...+..|+
T Consensus        94 ~~~~~~~~~-~~--~~~~~p~~i~~~~~g~l~v~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~p~  153 (270)
T 1rwi_B           94 AGSNNQTVL-PF--DGLNYPEGLAVDTQGAVYVAD-----------------RGNNRVVKLAAGSKTQTVLPFTGLNDPD  153 (270)
T ss_dssp             TTCSCCEEC-CC--CSCSSEEEEEECTTCCEEEEE-----------------GGGTEEEEECTTCCSCEECCCCSCCSCC
T ss_pred             CCCceEeee-ec--CCcCCCcceEECCCCCEEEEE-----------------CCCCEEEEEECCCceeEeeccccCCCce
Confidence            887 22211 11  123457899999999999997                 2346899998765543332 23456799


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhh
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      +++++++|+ +|+++...++|.+|+.++..   ...........|.++++|++|++|++....                 
T Consensus       154 ~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~-----------------  212 (270)
T 1rwi_B          154 GVAVDNSGN-VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNT-----------------  212 (270)
T ss_dssp             CEEECTTCC-EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTT-----------------
T ss_pred             eEEEeCCCC-EEEEECCCCEEEEEecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCC-----------------
Confidence            999999995 99999888999999976532   111111111468999999999999998643                 


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEE-eCCEEEEEecCCCeEEEEeCCCCCCC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIK-IGDHLYCGSVHHRGILHLDVNQHPAR  390 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~-~~g~Lyigs~~~~~i~~~~~~~~~~~  390 (393)
                                       +.|.+++++++....+..........+.. .+|+||++...++.|.++++.+.+..
T Consensus       213 -----------------~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          213 -----------------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             -----------------SCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             -----------------CcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence                             46999999887665543322333344443 45899999999999999998876654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.86  E-value=4.5e-19  Score=175.78  Aligned_cols=239  Identities=13%  Similarity=0.129  Sum_probs=175.4

Q ss_pred             ccCCCceEEEecC--CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-----
Q 016199           81 VLKGPEDLLYDAH--SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-----  153 (393)
Q Consensus        81 ~~~~Pe~ia~d~~--g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-----  153 (393)
                      .+..|.+|++|++  ++.||++...++|++++++++.    +..+......|.+|+++++|      +|||++..     
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~----v~~~~~~~~~P~giavd~dG------~lyVad~~~~~~~  206 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY----VDIKTTNIGQCADVNFTLNG------DMVVVDDQSSDTN  206 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE----EEEECCCCSCEEEEEECTTC------CEEEEECCSCTTS
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE----EEEeecCCCCccEEEECCCC------CEEEEcCCCCccc
Confidence            6788999999984  3469998776889999997765    66665555679999999999      89999873     


Q ss_pred             CceEEEeCCc-eE---EEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-
Q 016199          154 KGLLKISGNS-TV---LLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-  227 (393)
Q Consensus       154 ~gl~~id~~g-~~---~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-  227 (393)
                      .+++.++.++ ..   .+.      .+..++++++++ +|+|||+|                 ...++|+++|++++.. 
T Consensus       207 ~gv~~~~~~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d-----------------~~~~~V~~~d~~~g~~~  263 (433)
T 4hw6_A          207 TGIYLFTRASGFTERLSLC------NARGAKTCAVHPQNGKIYYTR-----------------YHHAMISSYDPATGTLT  263 (433)
T ss_dssp             EEEEEECGGGTTCCEEEEE------ECSSBCCCEECTTTCCEEECB-----------------TTCSEEEEECTTTCCEE
T ss_pred             ceEEEEECCCCeecccccc------ccCCCCEEEEeCCCCeEEEEE-----------------CCCCEEEEEECCCCeEE
Confidence            3577777655 21   221      256789999999 89999998                 4467899999987776 


Q ss_pred             EEEec--CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeecc--CC------------CCCCeEEE-
Q 016199          228 KVLVS--DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK--NAGRVEKFIET--LP------------GLPDNIRY-  288 (393)
Q Consensus       228 ~~~~~--~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~--~~~~~~~~~~~--l~------------g~P~~i~~-  288 (393)
                      +.+..  ....+.+++++++|+.|||+++.+++|+++++++.  .......++..  ..            ..|.++++ 
T Consensus       264 ~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~  343 (433)
T 4hw6_A          264 EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFV  343 (433)
T ss_dssp             EEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEE
T ss_pred             EEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEE
Confidence            33322  23445679999999999999999999999998642  11222233321  11            24788999 


Q ss_pred             --------CCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-----
Q 016199          289 --------DGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-----  355 (393)
Q Consensus       289 --------d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-----  355 (393)
                              |.+|++||+....                                  +.|.+++++|++......+.     
T Consensus       344 ~n~~y~~dd~~g~lyvaD~~n----------------------------------~~I~~~~~~G~v~t~~G~g~~~~~G  389 (433)
T 4hw6_A          344 KNEAYAGEEDEYDFYFCDRDS----------------------------------HTVRVLTPEGRVTTYAGRGNSREWG  389 (433)
T ss_dssp             ECGGGTTSSCCEEEEEEETTT----------------------------------TEEEEECTTSEEEEEECCCTTCSSC
T ss_pred             ccccccccCCCCcEEEEECCC----------------------------------CEEEEECCCCCEEEEEeCCCCCccc
Confidence                    9999999998754                                  56899999997665543211     


Q ss_pred             -----------CCccEEEE-E-eCCEEEEEecCCCeEEEEeCCC
Q 016199          356 -----------MSLISSAI-K-IGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       356 -----------~~~~~~~~-~-~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                                 +.....+. . .+|+||++...+..|.++++++
T Consensus       390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~  433 (433)
T 4hw6_A          390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPEE  433 (433)
T ss_dssp             CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred             cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecCC
Confidence                       33334444 3 4799999999999999998864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=1.6e-18  Score=171.74  Aligned_cols=240  Identities=14%  Similarity=0.128  Sum_probs=175.1

Q ss_pred             ccCCCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-----
Q 016199           81 VLKGPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-----  154 (393)
Q Consensus        81 ~~~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-----  154 (393)
                      .+..|.+|++|+ +++.||+....++|.+++++++.    +..+......|.+|+++++|     +.||+++...     
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~----v~~~~~~~~~P~~ia~d~~G-----~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY----VSTVYSGLSKVRTICWTHEA-----DSMIITNDQNNNDRP  205 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE----EEEEECCCSCEEEEEECTTS-----SEEEEEECCSCTTSE
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE----EEEEecCCCCcceEEEeCCC-----CEEEEEeCCCCcccc
Confidence            468999999997 34569998877889999998765    66665556789999999998     2499998733     


Q ss_pred             ceEEEeCCc-eE---EEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          155 GLLKISGNS-TV---LLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       155 gl~~id~~g-~~---~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                      .++.++.++ ..   .+.      .+..++++++++ +|+||++|                 ...++|++|+++++....
T Consensus       206 ~v~~~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d-----------------~~~~~V~~~~~~~~~~~~  262 (430)
T 3tc9_A          206 NNYILTRESGFKVITELT------KGQNCNGAETHPINGELYFNS-----------------WNAGQVFRYDFTTQETTP  262 (430)
T ss_dssp             EEEEEEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEE-----------------TTTTEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEE-----------------CCCCEEEEEECCCCcEEE
Confidence            366677766 22   221      246789999999 88999998                 345789999998877633


Q ss_pred             Ee--cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC--Ccceeeeecc--C------------CCCCC-eEEE--
Q 016199          230 LV--SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN--AGRVEKFIET--L------------PGLPD-NIRY--  288 (393)
Q Consensus       230 ~~--~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~--~~~~~~~~~~--l------------~g~P~-~i~~--  288 (393)
                      +.  .....|++++++++|+.+||++...++|++++.++..  ......+...  .            -..|. ++++  
T Consensus       263 ~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~  342 (430)
T 3tc9_A          263 LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKN  342 (430)
T ss_dssp             EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEEC
T ss_pred             EEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcc
Confidence            32  2346799999999999999999999999999987531  1112222211  0            12476 7887  


Q ss_pred             ------CCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCC--------
Q 016199          289 ------DGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDP--------  354 (393)
Q Consensus       289 ------d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~--------  354 (393)
                            |++|++||+....                                  +.|.+++++|++......+        
T Consensus       343 ~~y~~~D~~g~lyvaD~~n----------------------------------~~I~~i~~~G~v~~~~g~g~~~~~G~~  388 (430)
T 3tc9_A          343 PAYKGSSDEYDFYFCDREN----------------------------------HCIRILTPQGRVTTFAGRGSNGTSGYN  388 (430)
T ss_dssp             GGGTTSSCCEEEEEEEGGG----------------------------------TEEEEECTTSEEEEEEECCTTSSSSCB
T ss_pred             ccccccCCCCeEEEEECCC----------------------------------cEEEEECCCCcEEEEEeCCCCCCCccc
Confidence                  5679999998753                                  4699999999776655431        


Q ss_pred             ----C----CCccEEEEEe--CCEEEEEecCCCeEEEEeCCC
Q 016199          355 ----E----MSLISSAIKI--GDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       355 ----~----~~~~~~~~~~--~g~Lyigs~~~~~i~~~~~~~  386 (393)
                          .    +.....+..+  +|+||++...+..|.++++++
T Consensus       389 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~  430 (430)
T 3tc9_A          389 DGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYEE  430 (430)
T ss_dssp             CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred             CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccCC
Confidence                0    2233444333  699999999999999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.83  E-value=1.7e-17  Score=153.76  Aligned_cols=233  Identities=11%  Similarity=0.083  Sum_probs=169.4

Q ss_pred             ccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCC-Cce
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAY-KGL  156 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl  156 (393)
                      ....|.+++++++|+ +|+++. +++|.+++++ +.    +..+..  ....|.+|+++++|      ++|+++.. ++|
T Consensus        18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~----~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~v   85 (300)
T 2qc5_A           18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GR----IKEFEVPTPDAKVMCLIVSSLG------DIWFTENGANKI   85 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC----EEEEECSSTTCCEEEEEECTTS------CEEEEETTTTEE
T ss_pred             CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-Cc----eEEEECCCCCCcceeEEECCCC------CEEEEecCCCeE
Confidence            357899999999997 888875 7899999987 44    444432  13579999999999      99999874 569


Q ss_pred             EEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe--cC
Q 016199          157 LKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV--SD  233 (393)
Q Consensus       157 ~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~--~~  233 (393)
                      +++++++ ...+...  . ....+++++++++|++|+++                 ...++|+++|++ ++...+.  ..
T Consensus        86 ~~~d~~g~~~~~~~~--~-~~~~~~~i~~~~~g~l~v~~-----------------~~~~~i~~~~~~-g~~~~~~~~~~  144 (300)
T 2qc5_A           86 GKLSKKGGFTEYPLP--Q-PDSGPYGITEGLNGDIWFTQ-----------------LNGDRIGKLTAD-GTIYEYDLPNK  144 (300)
T ss_dssp             EEECTTSCEEEEECS--S-TTCCEEEEEECSTTCEEEEE-----------------TTTTEEEEECTT-SCEEEEECSST
T ss_pred             EEECCCCCeEEecCC--C-CCCCCccceECCCCCEEEEc-----------------cCCCeEEEECCC-CCEEEccCCCC
Confidence            9999887 4333211  1 12457899999999999997                 335689999998 6655442  23


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcC
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRY  312 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~  312 (393)
                      ...|++++++++|+ +|+++...++|++|+.++.    ...+. ......|.++++|++|++|++....           
T Consensus       145 ~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-----------  208 (300)
T 2qc5_A          145 GSYPAFITLGSDNA-LWFTENQNNSIGRITNTGK----LEEYPLPTNAAAPVGITSGNDGALWFVEIMG-----------  208 (300)
T ss_dssp             TCCEEEEEECTTSS-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECTTSSEEEEETTT-----------
T ss_pred             CCCceeEEECCCCC-EEEEecCCCeEEEECCCCc----EEEeeCCCCCCCcceEEECCCCCEEEEccCC-----------
Confidence            56789999999996 9999988899999997432    22222 1112368899999999999998643           


Q ss_pred             cchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEE-eCCEEEEEecCCCeEEEEeCC
Q 016199          313 PFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIK-IGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       313 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~-~~g~Lyigs~~~~~i~~~~~~  385 (393)
                                             +.|.+++++|+............+..+.. .+|+||++....+.|.+++.+
T Consensus       209 -----------------------~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          209 -----------------------NKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             -----------------------TEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             -----------------------CEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence                                   46999999877655322212333334444 468999999888999999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.83  E-value=6.3e-18  Score=156.75  Aligned_cols=229  Identities=11%  Similarity=0.095  Sum_probs=166.0

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeC-CCceE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADA-YKGLL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~  157 (393)
                      ...|.+++++++|+ +|+++. +++|++++++ +.    ...+..  ....|.+++++++|      ++|+++. ..+|+
T Consensus        61 ~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~----~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~  128 (300)
T 2qc5_A           61 DAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GG----FTEYPLPQPDSGPYGITEGLNG------DIWFTQLNGDRIG  128 (300)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC----EEEEECSSTTCCEEEEEECSTT------CEEEEETTTTEEE
T ss_pred             CCcceeEEECCCCC-EEEEecCCCeEEEECCC-CC----eEEecCCCCCCCCccceECCCC------CEEEEccCCCeEE
Confidence            46799999999987 888776 6789999987 44    444432  23579999999999      9999987 45799


Q ss_pred             EEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe--cCc
Q 016199          158 KISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV--SDL  234 (393)
Q Consensus       158 ~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~--~~l  234 (393)
                      ++++++ .....  .. .....+++++++++|++|+++                 ...++|+++|+ +++...+.  ...
T Consensus       129 ~~~~~g~~~~~~--~~-~~~~~~~~i~~d~~g~l~v~~-----------------~~~~~i~~~~~-~g~~~~~~~~~~~  187 (300)
T 2qc5_A          129 KLTADGTIYEYD--LP-NKGSYPAFITLGSDNALWFTE-----------------NQNNSIGRITN-TGKLEEYPLPTNA  187 (300)
T ss_dssp             EECTTSCEEEEE--CS-STTCCEEEEEECTTSSEEEEE-----------------TTTTEEEEECT-TCCEEEEECSSTT
T ss_pred             EECCCCCEEEcc--CC-CCCCCceeEEECCCCCEEEEe-----------------cCCCeEEEECC-CCcEEEeeCCCCC
Confidence            999887 43332  11 123467899999999999997                 33568999999 56655543  235


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCc
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYP  313 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~  313 (393)
                      ..|.+++++++| .+|+++...++|.+|+.++.    ...+. ......|.++++|++|++|++....            
T Consensus       188 ~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~------------  250 (300)
T 2qc5_A          188 AAPVGITSGNDG-ALWFVEIMGNKIGRITTTGE----ISEYDIPTPNARPHAITAGKNSEIWFTEWGA------------  250 (300)
T ss_dssp             CCEEEEEECTTS-SEEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECSTTCEEEEETTT------------
T ss_pred             CCcceEEECCCC-CEEEEccCCCEEEEEcCCCc----EEEEECCCCCCCceEEEECCCCCEEEeccCC------------
Confidence            678999999998 69999988889999997432    22221 1112358899999999999998643            


Q ss_pred             chhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199          314 FIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       314 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                                            ++|.+++++|++. .+..+.  ......+...+|+||+++. + .|.+++++
T Consensus       251 ----------------------~~i~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          251 ----------------------NQIGRITNDNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             ----------------------TEEEEECTTSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             ----------------------CeEEEECCCCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence                                  5799999987655 443332  2222333445689999987 5 99999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.83  E-value=3.1e-17  Score=152.02  Aligned_cols=231  Identities=13%  Similarity=0.164  Sum_probs=168.8

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCC-CceE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAY-KGLL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~  157 (393)
                      ...|.++++|++|+ +|+++. +++|.+++++ +.    +..+..  ....|.+++++++|      ++|+++.. ++|+
T Consensus        14 ~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~----~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~   81 (299)
T 2z2n_A           14 DTGPYGITVSDKGK-VWITQHKANMISCINLD-GK----ITEYPLPTPDAKVMCLTISSDG------EVWFTENAANKIG   81 (299)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CC----EEEEECSSTTCCEEEEEECTTS------CEEEEETTTTEEE
T ss_pred             CCCccceEECCCCC-EEEEecCCCcEEEEcCC-CC----eEEecCCcccCceeeEEECCCC------CEEEeCCCCCeEE
Confidence            46899999999997 888887 6799999988 44    554432  24679999999999      99999874 5699


Q ss_pred             EEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe--cCc
Q 016199          158 KISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV--SDL  234 (393)
Q Consensus       158 ~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~--~~l  234 (393)
                      ++++++ .+.+...   .....+++++++++|++|+++                 ...++|+++|+ +++...+.  ...
T Consensus        82 ~~~~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~-----------------~~~~~i~~~d~-~g~~~~~~~~~~~  140 (299)
T 2z2n_A           82 RITKKGIIKEYTLP---NPDSAPYGITEGPNGDIWFTE-----------------MNGNRIGRITD-DGKIREYELPNKG  140 (299)
T ss_dssp             EECTTSCEEEEECS---STTCCEEEEEECTTSCEEEEE-----------------TTTTEEEEECT-TCCEEEEECSSTT
T ss_pred             EECCCCcEEEEeCC---CcCCCceeeEECCCCCEEEEe-----------------cCCceEEEECC-CCCEEEecCCCCC
Confidence            999887 4333211   123457899999999999996                 33568999999 56655443  235


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee-eccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCc
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF-IETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYP  313 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~-~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~  313 (393)
                      ..|++++++++| .+|+++...++|++++.++    +...+ .......|.++++|++|++|++....            
T Consensus       141 ~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------------  203 (299)
T 2z2n_A          141 SYPSFITLGSDN-ALWFTENQNNAIGRITESG----DITEFKIPTPASGPVGITKGNDDALWFVEIIG------------  203 (299)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTT------------
T ss_pred             CCCceEEEcCCC-CEEEEeCCCCEEEEEcCCC----cEEEeeCCCCCCcceeEEECCCCCEEEEccCC------------
Confidence            678999999998 6899998889999999732    22222 11122358899999999999998643            


Q ss_pred             chhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEEEEE-eCCEEEEEecCCCeEEEEeCC
Q 016199          314 FIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIK-IGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       314 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~-~~g~Lyigs~~~~~i~~~~~~  385 (393)
                                            +.|.++|++|+.. .+..+. ...+..+.. .+|+||++....+.|.+++.+
T Consensus       204 ----------------------~~i~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          204 ----------------------NKIGRITTSGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             ----------------------TEEEEECTTCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             ----------------------ceEEEECCCCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence                                  5799999977654 343332 333344444 468999998888999999974

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.82  E-value=2.2e-17  Score=152.93  Aligned_cols=231  Identities=11%  Similarity=0.096  Sum_probs=165.4

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeC-CCceEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADA-YKGLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~  158 (393)
                      ..|.+++++++|+ +|+++. +++|+++++++ .    ...+..  ....|.+|+++++|      +||+++. ..+|++
T Consensus        57 ~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~----~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~~  124 (299)
T 2z2n_A           57 AKVMCLTISSDGE-VWFTENAANKIGRITKKG-I----IKEYTLPNPDSAPYGITEGPNG------DIWFTEMNGNRIGR  124 (299)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTTS-C----EEEEECSSTTCCEEEEEECTTS------CEEEEETTTTEEEE
T ss_pred             CceeeEEECCCCC-EEEeCCCCCeEEEECCCC-c----EEEEeCCCcCCCceeeEECCCC------CEEEEecCCceEEE
Confidence            6799999999987 888776 67899999763 3    444432  34579999999999      9999976 457999


Q ss_pred             EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ecCcc
Q 016199          159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VSDLY  235 (393)
Q Consensus       159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~~l~  235 (393)
                      +++++ ...+...   .....+++++++++|++|+++                 ...++|+++|+ +++...+  .....
T Consensus       125 ~d~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~-----------------~~~~~i~~~~~-~g~~~~~~~~~~~~  183 (299)
T 2z2n_A          125 ITDDGKIREYELP---NKGSYPSFITLGSDNALWFTE-----------------NQNNAIGRITE-SGDITEFKIPTPAS  183 (299)
T ss_dssp             ECTTCCEEEEECS---STTCCEEEEEECTTSCEEEEE-----------------TTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred             ECCCCCEEEecCC---CCCCCCceEEEcCCCCEEEEe-----------------CCCCEEEEEcC-CCcEEEeeCCCCCC
Confidence            99876 4333211   123457899999999999996                 33568999999 6766654  23456


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcc
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPF  314 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~  314 (393)
                      .|++++++++|+ +|+++...++|.+|+.++    ....+. ......|.++++|++|++|++....             
T Consensus       184 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------  245 (299)
T 2z2n_A          184 GPVGITKGNDDA-LWFVEIIGNKIGRITTSG----EITEFKIPTPNARPHAITAGAGIDLWFTEWGA-------------  245 (299)
T ss_dssp             CEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETTT-------------
T ss_pred             cceeEEECCCCC-EEEEccCCceEEEECCCC----cEEEEECCCCCCCceeEEECCCCCEEEeccCC-------------
Confidence            788999999985 899998889999999733    222231 1112468899999999999998543             


Q ss_pred             hhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          315 IRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       315 ~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                           ++|.++|++|++ ..+..+. ...+..+...+|+||++.. .+.|.++++++.
T Consensus       246 ---------------------~~i~~~d~~g~~-~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          246 ---------------------NKIGRLTSNNII-EEYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             ---------------------TEEEEEETTTEE-EEEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             ---------------------ceEEEECCCCce-EEEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence                                 579999997754 4443322 2223333337799999975 689999997654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.81  E-value=3.3e-17  Score=161.22  Aligned_cols=237  Identities=12%  Similarity=0.089  Sum_probs=169.6

Q ss_pred             ccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC--ceE
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK--GLL  157 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~--gl~  157 (393)
                      .+..|.+|++|++|+ ||+... +++|.+++++++.    +..+......|. ++++++|     +.||+++...  .|+
T Consensus       129 ~~~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~----~~~~~~~~~~~~-ia~~~~g-----~~l~~~d~~~~~~I~  197 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNK----VTTVHPGFKGGK-PAVTKDK-----QRVYSIGWEGTHTVY  197 (409)
T ss_dssp             CCCCEEEEEECSTTE-EEEEETTTTEEEEEETTTTE----EEEEEETCCBCB-CEECTTS-----SEEEEEBSSTTCEEE
T ss_pred             ccCCceEEEEeCCCC-EEEEecCCCcEEEEECCCCE----EEEeeccCCCCc-eeEecCC-----CcEEEEecCCCceEE
Confidence            467899999999987 777665 6799999998766    666555455677 9999988     3688887644  699


Q ss_pred             EEeCCc-e--EEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE---
Q 016199          158 KISGNS-T--VLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL---  230 (393)
Q Consensus       158 ~id~~g-~--~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~---  230 (393)
                      ++++++ .  ..+. .........++++++++ +|.||+++                  ..++|++||++++....+   
T Consensus       198 ~~d~~~~~~~~~~g-~~~~~~~~~p~~iav~p~~g~lyv~d------------------~~~~I~~~d~~~~~~~~~~~~  258 (409)
T 3hrp_A          198 VYMKASGWAPTRIG-QLGSTFSGKIGAVALDETEEWLYFVD------------------SNKNFGRFNVKTQEVTLIKQL  258 (409)
T ss_dssp             EEEGGGTTCEEEEE-ECCTTSCSCCCBCEECTTSSEEEEEC------------------TTCEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCCceeEEee-eccchhcCCcEEEEEeCCCCeEEEEE------------------CCCcEEEEECCCCCEEEEecc
Confidence            998865 2  2221 11111245688999999 78999985                  246899999988876655   


Q ss_pred             -ecCcc--CCC-cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC--------------CCCCCeEEECCCC
Q 016199          231 -VSDLY--FAN-GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL--------------PGLPDNIRYDGEG  292 (393)
Q Consensus       231 -~~~l~--~~n-gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l--------------~g~P~~i~~d~~G  292 (393)
                       ..+..  .|. ++++++++..+|++++.+++|++|+.++.    ...+....              -..|+++++|++|
T Consensus       259 ~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence             22221  234 99999977799999999999999997653    22232111              1258999999999


Q ss_pred             CEEEEEe-cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEEC-CCCcEEEEeeCC-------------CCC
Q 016199          293 HYLIALA-TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVD-LDGKPIAHYYDP-------------EMS  357 (393)
Q Consensus       293 ~lwva~~-~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~d~-------------~~~  357 (393)
                      ++|++.. ..                                  +.|.+++ ++|++......+             .+.
T Consensus       335 ~lyvad~~~~----------------------------------~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~  380 (409)
T 3hrp_A          335 NFYIVDGFKG----------------------------------YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFN  380 (409)
T ss_dssp             CEEEEETTTT----------------------------------CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBS
T ss_pred             CEEEEeCCCC----------------------------------CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeC
Confidence            9999976 44                                  4689999 677765444331             023


Q ss_pred             ccEEEE-EeCCEEEEEecCCCeEEEEeCC
Q 016199          358 LISSAI-KIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       358 ~~~~~~-~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                      ....+. ..+|+||++...+..|.++.++
T Consensus       381 ~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          381 YPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             SEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            333333 3459999999999999998863

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=1.4e-17  Score=158.50  Aligned_cols=249  Identities=14%  Similarity=0.188  Sum_probs=163.0

Q ss_pred             ccCCCceEEEecCCCEEEEEecCC-------------------------eEEEEEcCCCCCcceeeeeec--CCCceeee
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCEDG-------------------------WIKRVTLNDSPADSLVHNWIN--TGGRPLGI  133 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~g-------------------------~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl  133 (393)
                      .+..|.+++++++|+ +|++...+                         .|++++.+++.    +.....  ....|.+|
T Consensus        22 ~l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~p~gi   96 (329)
T 3fvz_A           22 LPGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE----ILQSSGKNLFYLPHGL   96 (329)
T ss_dssp             CCSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC----EEEEECTTTCSSEEEE
T ss_pred             ecCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe----EEeccCCCccCCceEE
Confidence            467789999999997 77776543                         69999987554    332221  22479999


Q ss_pred             EECCCCCCCCceEEEEEeCC-CceEEEeCCc-e---EEEeec-cC---CccccccccEEEcC-CCcEEEEeCCCccchhh
Q 016199          134 AFANSDPDADRITMIVADAY-KGLLKISGNS-T---VLLTDE-AE---GQKFKLTDGVDVAD-DGMIYFTDASNKYYLRE  203 (393)
Q Consensus       134 ~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g-~---~~l~~~-~~---g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~  203 (393)
                      +++++|      +||+++.. ..|.+++++| .   ..+... ..   ...+..|++|++++ +|++|++|..       
T Consensus        97 a~d~~g------~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~-------  163 (329)
T 3fvz_A           97 SIDTDG------NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-------  163 (329)
T ss_dssp             EECTTS------CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS-------
T ss_pred             EECCCC------CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC-------
Confidence            999999      99999875 4588999887 2   112110 01   12355789999999 8999999831       


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEEEEe----------cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec-CCCCcce
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETKVLV----------SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK-GKNAGRV  272 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~----------~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~-g~~~~~~  272 (393)
                               ..++|.+||+++.....+.          ..+..|+++++++++..+||++..+++|.+|+++ |+.   .
T Consensus       164 ---------~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~---~  231 (329)
T 3fvz_A          164 ---------CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF---V  231 (329)
T ss_dssp             ---------SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---E
T ss_pred             ---------CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE---E
Confidence                     3568999997755444442          1345699999999966999999999999999986 321   1


Q ss_pred             eeee-ccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEEC-CCCcEEEE
Q 016199          273 EKFI-ETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVD-LDGKPIAH  350 (393)
Q Consensus       273 ~~~~-~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~  350 (393)
                      ..+. ......|.++++.+ |.++......                           .........+..++ .+|+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~---------------------------~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          232 REIKHASFGRNVFAISYIP-GFLFAVNGKP---------------------------YFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             EEECCTTTTTCEEEEEEET-TEEEEEECCC---------------------------CTTCSCCCCEEEEETTTCCEEEE
T ss_pred             EEEeccccCCCcceeeecC-CEEEEeCCCE---------------------------EeccCCCcEEEEEEcCCCeEEEE
Confidence            1121 11112344555555 3333332110                           00001113578888 57888888


Q ss_pred             eeCC--CCCccEEE-EEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          351 YYDP--EMSLISSA-IKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       351 ~~d~--~~~~~~~~-~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                      +...  .......+ ...+|+||++...++.|.+++++..
T Consensus       284 ~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          284 FKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             ECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            7532  23333333 4456899999999999999998654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.78  E-value=4.3e-17  Score=156.23  Aligned_cols=240  Identities=13%  Similarity=0.095  Sum_probs=160.1

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEEec---CC--eEEEEEcCCCCCcceeeeeec-------CCCceeeeEECCCCCCC
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTGCE---DG--WIKRVTLNDSPADSLVHNWIN-------TGGRPLGIAFANSDPDA  142 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~---~g--~I~~~~~~~~~~~~~~~~~~~-------~~~~p~gl~~d~~G~~~  142 (393)
                      +.+.+.. ..|++++++++|+ +|++..   ++  +|+.++ + +.    ...+..       ....|+++++|++|   
T Consensus        10 ~~v~~~~-~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~-~-g~----~~~~p~~~~~~~~~~~~p~gv~~d~~g---   78 (343)
T 2qe8_A           10 EVVAELS-LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELT-Q-DG----LIPFPPQSGNAIITFDTVLGIKSDGNG---   78 (343)
T ss_dssp             EEEEEES-SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEE-T-TE----EEESCCCCSSCCCCCSCEEEEEECSSS---
T ss_pred             EEEEEcC-CCcceEEECCCCC-EEEEeCCCCCCceEEEEEC-C-CC----eecCCCcccCcccceeEeeEEEEcCCC---
Confidence            4444433 6899999999997 777742   34  788887 3 32    343321       12469999999999   


Q ss_pred             CceEEEEEeCC------CceEEEeCC-c--eEEEee-ccCCccccccccEEEcCC-CcEEEEeCCCccchhhheehhccc
Q 016199          143 DRITMIVADAY------KGLLKISGN-S--TVLLTD-EAEGQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEG  211 (393)
Q Consensus       143 ~~~~L~v~~~~------~gl~~id~~-g--~~~l~~-~~~g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~  211 (393)
                         +||++|..      ..|+++|++ +  .+.+.. .....+..++++++++++ |.+|++|.+.+             
T Consensus        79 ---~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~-------------  142 (343)
T 2qe8_A           79 ---IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD-------------  142 (343)
T ss_dssp             ---EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG-------------
T ss_pred             ---cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC-------------
Confidence               99999865      579999976 4  222221 111223356799999974 79999985321             


Q ss_pred             CCCcEEEEEeCCCCeEEEEecC------------------------------ccCCCcEEEcCCCCEEEEEeCCCCeEEE
Q 016199          212 KPNGRLLSFDPVTKETKVLVSD------------------------------LYFANGVVLSPDQTHLVYCETSMRRCRK  261 (393)
Q Consensus       212 ~~~g~l~~~d~~t~~~~~~~~~------------------------------l~~~ngi~~s~dg~~l~v~~~~~~ri~~  261 (393)
                       ..++|++||+.+++......+                              ...+|||++++||+.||+++....+|++
T Consensus       143 -~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~  221 (343)
T 2qe8_A          143 -DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR  221 (343)
T ss_dssp             -GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred             -CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence             245788888876665544321                              0236999999999999999998889999


Q ss_pred             EEecC---CCCcceeee---e-ccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCC
Q 016199          262 FYIKG---KNAGRVEKF---I-ETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKS  334 (393)
Q Consensus       262 ~~~~g---~~~~~~~~~---~-~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  334 (393)
                      ++.+.   ...+..+.+   . ....+.|+|+++|++|++|++....                                 
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~---------------------------------  268 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH---------------------------------  268 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG---------------------------------
T ss_pred             EEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCC---------------------------------
Confidence            98631   111111111   0 0123479999999999999998754                                 


Q ss_pred             CceEEEECC-CCcEEEEeeCCCCCccEEE-EEeCCEEEEEecCC
Q 016199          335 SSGVFIVDL-DGKPIAHYYDPEMSLISSA-IKIGDHLYCGSVHH  376 (393)
Q Consensus       335 ~~~v~~~d~-~g~~~~~~~d~~~~~~~~~-~~~~g~Lyigs~~~  376 (393)
                       +.|.++|+ +|+......++.....+.+ ...+|+||+.+...
T Consensus       269 -~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          269 -SAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             -TEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             -CeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence             56999999 8876555555433333333 33568999997643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.78  E-value=7.8e-17  Score=148.60  Aligned_cols=205  Identities=18%  Similarity=0.216  Sum_probs=153.2

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCC-CCCCCceEEEEEeCCC-ceE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANS-DPDADRITMIVADAYK-GLL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~-G~~~~~~~L~v~~~~~-gl~  157 (393)
                      ...|+++++|++++.||+... +++|++++++++.    ...+... ...|.+|++|++ |      +||+++... .|.
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~~~~~~~~~~~p~~ia~d~~~~------~lyv~d~~~~~I~  104 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PTTIIRQDLGSPEGIALDHLGR------TIFWTDSQLDRIE  104 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CEEEECTTCCCEEEEEEETTTT------EEEEEETTTTEEE
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----cEEEEECCCCCccEEEEEecCC------eEEEEECCCCEEE
Confidence            367999999997777887775 6799999998764    4444332 258999999984 6      999998754 588


Q ss_pred             EEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cC
Q 016199          158 KISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SD  233 (393)
Q Consensus       158 ~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~  233 (393)
                      +++.+|  .+.+...    .+..|+++++|+ +|+||+++..               ...++|+++++++...+.+. ..
T Consensus       105 ~~~~~g~~~~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~dg~~~~~~~~~~  165 (267)
T 1npe_A          105 VAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDN  165 (267)
T ss_dssp             EEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTT
T ss_pred             EEEcCCCCEEEEEEC----CCCCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEecCCCCcEEEEECC
Confidence            888887  3333211    134688999999 5799999732               12468999998765555544 45


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCc
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYP  313 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~  313 (393)
                      +..|+|++++++++.|||+++..++|.++++++.   ....+.+. ...|.++++| +|++|++....            
T Consensus       166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~------------  228 (267)
T 1npe_A          166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEG-LQYPFAVTSY-GKNLYYTDWKT------------  228 (267)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEEC-CCSEEEEEEE-TTEEEEEETTT------------
T ss_pred             CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEecC-CCCceEEEEe-CCEEEEEECCC------------
Confidence            7789999999999899999999999999998653   23334433 3479999998 68899988754            


Q ss_pred             chhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCC
Q 016199          314 FIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDP  354 (393)
Q Consensus       314 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~  354 (393)
                                            +.|.++|++ |++++.+...
T Consensus       229 ----------------------~~v~~~d~~~g~~~~~i~~g  248 (267)
T 1npe_A          229 ----------------------NSVIAMDLAISKEMDTFHPH  248 (267)
T ss_dssp             ----------------------TEEEEEETTTTEEEEEECCS
T ss_pred             ----------------------CeEEEEeCCCCCceEEEccc
Confidence                                  569999985 7888887643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.77  E-value=1.2e-16  Score=153.76  Aligned_cols=186  Identities=17%  Similarity=0.194  Sum_probs=139.9

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECC-CCCCCCceEEEEEeCC-CceE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFAN-SDPDADRITMIVADAY-KGLL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~  157 (393)
                      +..|+++++|+.++.||+.+. .++|+++++++..    .+.+... ...|.||++|+ .|      +||+++.. +.|.
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~~~~~~p~glavd~~~g------~ly~~d~~~~~I~  141 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----VEEVVSTGLESPGGLAVDWVHD------KLYWTDSGTSRIE  141 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCC----ceEEEeCCCCCccEEEEecCCC------eEEEEcCCCCeEE
Confidence            578999999976667877664 7799999998765    4444332 35799999996 67      99999885 4588


Q ss_pred             EEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cC
Q 016199          158 KISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SD  233 (393)
Q Consensus       158 ~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~  233 (393)
                      +++.+|  .+.+..    ..+..|++|++|+ +|.||++|..                ..++|+++++++...+.+. .+
T Consensus       142 ~~~~dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~  201 (349)
T 3v64_C          142 VANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTH  201 (349)
T ss_dssp             EEETTSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSS
T ss_pred             EEcCCCCceEEEEe----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECC
Confidence            899888  333321    1245688999998 6799999832                1268999999876655554 46


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +..|||++++++++.|||+++..++|.+++++|..   .+.+.....+.|++++++ +|++|++.+..
T Consensus       202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~~  265 (349)
T 3v64_C          202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWHT  265 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred             CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CCEEEEecCCC
Confidence            88899999999888999999999999999998642   233433323579999995 57899987754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.76  E-value=9.3e-16  Score=147.64  Aligned_cols=227  Identities=15%  Similarity=0.146  Sum_probs=163.6

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCC-ceEEEeCCc--
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYK-GLLKISGNS--  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~-gl~~id~~g--  163 (393)
                      .+.+++. .|+++.. ..|.++++++..    .+........|.++++|+ ++      .||++|... .|++++++|  
T Consensus        39 ~~~~~~~-~ll~~~~-~~I~~i~~~g~~----~~~~~~~~~~~~~l~~d~~~~------~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           39 KALGPEP-VLLFANR-IDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRE------LVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             EESSSCC-EEEEECB-SCEEEECTTSCC----EEEEECSCSCEEEEEEETTTT------EEEEEETTTTEEEEEETTSCS
T ss_pred             cccccCc-eeEeecc-cceEEEeCCCCe----eEEeecCCCceEEEEEecccc------EEEEEeccCCceEEEecCCCC
Confidence            3344443 5666654 359999988765    555555556799999995 67      999999754 588999887  


Q ss_pred             eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcEE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVV  241 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi~  241 (393)
                      .+.+...    .+..+.++++|. +|+||++|.                 ..++|.++++++...+.+. .++..|++++
T Consensus       107 ~~~~~~~----~~~~p~glavd~~~g~ly~~d~-----------------~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia  165 (349)
T 3v64_C          107 VEEVVST----GLESPGGLAVDWVHDKLYWTDS-----------------GTSRIEVANLDGAHRKVLLWQSLEKPRAIA  165 (349)
T ss_dssp             CEEEECS----SCSCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred             ceEEEeC----CCCCccEEEEecCCCeEEEEcC-----------------CCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence            3333211    134578999997 679999983                 3468999999876555554 4678899999


Q ss_pred             EcCCCCEEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCeEEECC-CCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          242 LSPDQTHLVYCETSM-RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-EGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      ++|++..+||++... ++|++++++|..   .+.+....-..|++|++|+ +|++|++....                  
T Consensus       166 vdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~------------------  224 (349)
T 3v64_C          166 LHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH------------------  224 (349)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEEEETTT------------------
T ss_pred             EecCcCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEEEECCC------------------
Confidence            999888999999988 999999998642   2333322234699999995 67799987643                  


Q ss_pred             hhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          320 GMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                      +.|.+++.+|...+.+..........+..++++||++...+..|.+++.
T Consensus       225 ----------------~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~  273 (349)
T 3v64_C          225 ----------------HVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANK  273 (349)
T ss_dssp             ----------------TEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ----------------CEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEc
Confidence                            4699999988655544433333333444478999999999999999984

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.76  E-value=3.3e-16  Score=148.63  Aligned_cols=190  Identities=16%  Similarity=0.144  Sum_probs=136.2

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECC-CCCCCCceEEEEEeCC-CceE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFAN-SDPDADRITMIVADAY-KGLL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~  157 (393)
                      +..|+++++|++++.||+.+. +++|+++++++.......+.+.. ....|.+|++|. +|      +||+++.. +.|.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~------~ly~~d~~~~~I~  102 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVS  102 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC------eEEEEECCCCEEE
Confidence            578999999987667877765 67999999886210000233322 235799999995 67      99999875 4588


Q ss_pred             EEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cC
Q 016199          158 KISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SD  233 (393)
Q Consensus       158 ~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~  233 (393)
                      +++.+|  .+.+...    .+..|+++++|+ +|.||++|..                ..++|+++++++...+.+. ..
T Consensus       103 ~~~~~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~  162 (316)
T 1ijq_A          103 VADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTEN  162 (316)
T ss_dssp             EEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSS
T ss_pred             EEeCCCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECC
Confidence            899888  3334321    234688999997 6799999832                1368999999866555554 46


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEecC
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +..|+|++++++++.|||+++..++|.+++++|..   .+.+...  ....|.+++++. |++|++.+..
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~  228 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  228 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc---eEEEeecCCccCCcEEEEEEC-CEEEEEECCC
Confidence            88999999999988999999999999999998642   3444432  234799999984 7888887644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.75  E-value=6.5e-16  Score=142.39  Aligned_cols=227  Identities=15%  Similarity=0.190  Sum_probs=157.5

Q ss_pred             CEEEEEecCCeEEEEEcCCCCCcce--eeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCC-ceEEEeCCc--eEEEe
Q 016199           95 KLIYTGCEDGWIKRVTLNDSPADSL--VHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYK-GLLKISGNS--TVLLT  168 (393)
Q Consensus        95 ~~L~~~~~~g~I~~~~~~~~~~~~~--~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~-gl~~id~~g--~~~l~  168 (393)
                      ..||++.. +.|++++.++......  ...+......|.++++|+ ++      +||+++... .|.+++.+|  ...+.
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~------~ly~~d~~~~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK------VVYWTDISEPSIGRASLHGGEPTTII   74 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT------EEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC------EEEEEECCCCEEEEEecCCCCcEEEE
Confidence            35666654 4799999887541000  011111134689999998 56      999999754 588999887  23322


Q ss_pred             eccCCccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcEEEcCCC
Q 016199          169 DEAEGQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVVLSPDQ  246 (393)
Q Consensus       169 ~~~~g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi~~s~dg  246 (393)
                      .    ..+..++++++|++ |+||++|                 ...++|.+++.++...+.+. .++..|+++++++++
T Consensus        75 ~----~~~~~p~~ia~d~~~~~lyv~d-----------------~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~  133 (267)
T 1npe_A           75 R----QDLGSPEGIALDHLGRTIFWTD-----------------SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR  133 (267)
T ss_dssp             C----TTCCCEEEEEEETTTTEEEEEE-----------------TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred             E----CCCCCccEEEEEecCCeEEEEE-----------------CCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence            1    12346889999985 6999998                 34568999998765544443 356789999999988


Q ss_pred             CEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhh
Q 016199          247 THLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVV  323 (393)
Q Consensus       247 ~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~  323 (393)
                      +.+||++..  .++|+++++++..   .+.+.......|+++++|++ +++|++....                      
T Consensus       134 g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~----------------------  188 (267)
T 1npe_A          134 GNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGT----------------------  188 (267)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETTT----------------------
T ss_pred             CEEEEEECCCCCcEEEEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEEEECCC----------------------
Confidence            899999987  5799999987642   22333222247999999996 4688887644                      


Q ss_pred             hhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          324 RYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                  +.|.+++.+|.....+... ......+..++++||++...++.|.+++.+..
T Consensus       189 ------------~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          189 ------------HRAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             ------------TEEEEEETTEEEEEEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             ------------CEEEEEecCCCceEEEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCC
Confidence                        4699999987655444332 22223445578999999999999999998654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.75  E-value=3.3e-16  Score=152.88  Aligned_cols=187  Identities=17%  Similarity=0.189  Sum_probs=139.2

Q ss_pred             ccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECC-CCCCCCceEEEEEeCC-Cce
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFAN-SDPDADRITMIVADAY-KGL  156 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl  156 (393)
                      .+..|+++++|+.++.||+.+. .++|+++++++..    .+.+... ...|.||++|+ .|      +||+++.. ..|
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~~~~~~p~glavd~~~g------~lY~~d~~~~~I  183 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----VEEVVSTGLESPGGLAVDWVHD------KLYWTDSGTSRI  183 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC----EEEEECSSCSCCCCEEEETTTT------EEEEEETTTTEE
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC----cEEEEeCCCCCccEEEEEeCCC------eEEEEcCCCCeE
Confidence            3578999999976666777664 7799999998765    4444332 35799999996 67      99999985 458


Q ss_pred             EEEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-c
Q 016199          157 LKISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-S  232 (393)
Q Consensus       157 ~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~  232 (393)
                      .+++.+|  .+.+..    ..+..|++|++|+ +|.||++|..                ..++|+++++++...+.+. .
T Consensus       184 ~~~~~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~  243 (386)
T 3v65_B          184 EVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADT  243 (386)
T ss_dssp             EECBTTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECS
T ss_pred             EEEeCCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEEC
Confidence            8888888  333322    1245688999997 5699999832                1368999999876555554 5


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ++..|+||+++++++.|||+++..++|.+++++|..   .+.+.....+.|++|+++ +|++|++.+..
T Consensus       244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~~  308 (386)
T 3v65_B          244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWHT  308 (386)
T ss_dssp             SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred             CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CCEEEEeeCCC
Confidence            688899999999888999999999999999987632   233433323579999995 56788887644

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=7.6e-16  Score=146.67  Aligned_cols=217  Identities=12%  Similarity=0.115  Sum_probs=149.2

Q ss_pred             cCCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCC------ceeeeEECCCCCCCCceEEEEEeC--
Q 016199           82 LKGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGG------RPLGIAFANSDPDADRITMIVADA--  152 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~------~p~gl~~d~~G~~~~~~~L~v~~~--  152 (393)
                      ...|++++++++| .+|+++ .++.|.++++++++    +......+.      .|.+|++ .++      +||+++.  
T Consensus        83 ~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~----~~~~i~~g~~~~~~~~p~~i~~-~~~------~lyv~~~~~  150 (328)
T 3dsm_A           83 FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE----ITGYIECPDMDMESGSTEQMVQ-YGK------YVYVNCWSY  150 (328)
T ss_dssp             CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE----EEEEEECTTCCTTTCBCCCEEE-ETT------EEEEEECTT
T ss_pred             CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe----EEEEEEcCCccccCCCcceEEE-ECC------EEEEEcCCC
Confidence            3789999998888 699998 68899999998765    443334445      7999999 467      9999985  


Q ss_pred             CCceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          153 YKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       153 ~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      ...|..+|+++.+.......+   ..+++++++++|++|+++....... .     . ....+.|+++|++++++.....
T Consensus       151 ~~~v~viD~~t~~~~~~i~~g---~~p~~i~~~~dG~l~v~~~~~~~~~-~-----~-~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          151 QNRILKIDTETDKVVDELTIG---IQPTSLVMDKYNKMWTITDGGYEGS-P-----Y-GYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             CCEEEEEETTTTEEEEEEECS---SCBCCCEECTTSEEEEEBCCBCTTC-S-----S-CBCCCEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEEcC---CCccceEEcCCCCEEEEECCCccCC-c-----c-ccCCceEEEEECCCCeEEEEEe
Confidence            456999998651111111111   2467999999999999974320000 0     0 0013689999999887653322


Q ss_pred             --CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC-CCCEEEEEecCcchhhhhh
Q 016199          233 --DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-EGHYLIALATEFSTYWDLA  309 (393)
Q Consensus       233 --~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~~~r~~~~~~~  309 (393)
                        ....|+++++++|++.+|+++.   .|++++.++.+... ..+.......|+++++|+ +|++||+....-       
T Consensus       221 ~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y-------  289 (328)
T 3dsm_A          221 FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDY-------  289 (328)
T ss_dssp             CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTS-------
T ss_pred             cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEccccc-------
Confidence              1347999999999999999876   89999986433211 122221135799999997 788999972110       


Q ss_pred             hcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCC
Q 016199          310 YRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDP  354 (393)
Q Consensus       310 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~  354 (393)
                                             ...+.|.+||++|+.+..+..+
T Consensus       290 -----------------------~~~~~V~v~d~~g~~~~~i~~G  311 (328)
T 3dsm_A          290 -----------------------QQQGIVYRYSPQGKLIDEFYVG  311 (328)
T ss_dssp             -----------------------SSEEEEEEECTTCCEEEEEEEE
T ss_pred             -----------------------ccCCEEEEECCCCCEEEEEEec
Confidence                                   0015699999999999888643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.74  E-value=2.5e-15  Score=146.57  Aligned_cols=229  Identities=15%  Similarity=0.136  Sum_probs=164.9

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCC-ceEEEeCCc-
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYK-GLLKISGNS-  163 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~-gl~~id~~g-  163 (393)
                      +.+.++++ .|+++.. ..|.++++++..    ...+......|.++++|+ ++      +||++|... .|++++++| 
T Consensus        81 C~~~~~~~-~l~~~~~-~~I~~i~~~~~~----~~~~~~~~~~~~gl~~d~~~~------~ly~~D~~~~~I~r~~~~g~  148 (386)
T 3v65_B           81 CKALGPEP-VLLFANR-IDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRE------LVFWSDVTLDRILRANLNGS  148 (386)
T ss_dssp             EEECSSCC-EEEEECB-SCEEEECTTSCC----CEEEECSCSCEEEEEEETTTT------EEEEEETTTTEEEEEETTSC
T ss_pred             ECCccccc-eeEeecC-ccceeeccCCCc----EEEEecCCCccEEEEEecCCC------eEEEEeCCCCcEEEEecCCC
Confidence            34444443 4665554 469999988765    555555557899999995 67      999998754 588999887 


Q ss_pred             -eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGV  240 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi  240 (393)
                       .+.+..    ..+..++++++|+ .|+||++|.                 ..++|.+++++++..+.+. .++..|++|
T Consensus       149 ~~~~~~~----~~~~~p~glavd~~~g~lY~~d~-----------------~~~~I~~~~~dg~~~~~l~~~~l~~P~gi  207 (386)
T 3v65_B          149 NVEEVVS----TGLESPGGLAVDWVHDKLYWTDS-----------------GTSRIEVANLDGAHRKVLLWQSLEKPRAI  207 (386)
T ss_dssp             CEEEEEC----SSCSCCCCEEEETTTTEEEEEET-----------------TTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred             CcEEEEe----CCCCCccEEEEEeCCCeEEEEcC-----------------CCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence             333321    1234578999996 679999983                 3468999998866555544 467889999


Q ss_pred             EEcCCCCEEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCeEEECC-CCCEEEEEecCcchhhhhhhcCcchhhh
Q 016199          241 VLSPDQTHLVYCETSM-RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-EGHYLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      +++|++..|||++... ++|++++++|..   .+.+....-..|++|++|+ ++++|++....                 
T Consensus       208 avdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~-----------------  267 (386)
T 3v65_B          208 ALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH-----------------  267 (386)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETTT-----------------
T ss_pred             EEEcCCCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECCC-----------------
Confidence            9999888999999988 899999987642   2333322234699999995 67799987643                 


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                                       +.|.+++.+|...+.+..........+..++++||++...+..|.+++..
T Consensus       268 -----------------~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~  317 (386)
T 3v65_B          268 -----------------HVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKF  317 (386)
T ss_dssp             -----------------TEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             -----------------CEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECC
Confidence                             46999999886555544333333344444889999999999999999843

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.73  E-value=8.4e-16  Score=146.06  Aligned_cols=188  Identities=14%  Similarity=0.168  Sum_probs=136.2

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCC-CceEE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAY-KGLLK  158 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~~  158 (393)
                      +..|.++++++.++.||+.+. .++|+++++++....  ..........|.|+++|. .|      +||+++.. ..|.+
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--~~~~~~~l~~p~glavd~~~g------~ly~~d~~~~~I~~  105 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--QNVVVSGLLSPDGLACDWLGE------KLYWTDSETNRIEV  105 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--CEEEEECCSCCCEEEEETTTT------EEEEEETTTTEEEE
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--EEEEcCCCCCccEEEEEcCCC------eEEEEECCCCEEEE
Confidence            466888999986556776654 779999999875310  111222235799999996 67      99999875 45888


Q ss_pred             EeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCc
Q 016199          159 ISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDL  234 (393)
Q Consensus       159 id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l  234 (393)
                      ++++|  .+.+..    ..+..|++|++|+ .|.||++|.+                ..++|+++++++...+.+ ..++
T Consensus       106 ~~~dG~~~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l  165 (318)
T 3sov_A          106 SNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEI  165 (318)
T ss_dssp             EETTSCSCEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSC
T ss_pred             EECCCCcEEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCC
Confidence            89888  344432    1235688999997 5799999832                246899999986555554 3568


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ..|||++++++++.|||+++..++|.+++++|.   ..+.+.....+.|++++++.+ .+|++.+..
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~glav~~~-~lywtd~~~  228 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFED-ILYWTDWST  228 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSCCSCEEEEEEETT-EEEEEETTT
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---ceEEEecCCCCCceEEEEeCC-EEEEEecCC
Confidence            899999999998899999999999999999864   234454433457999999855 566655543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=2.6e-15  Score=149.66  Aligned_cols=246  Identities=16%  Similarity=0.184  Sum_probs=171.6

Q ss_pred             cCccCCCceEEEec-CCCEEEEEecC-CeEEEEEcCCCCCcceeeeeecCC----CceeeeEE-------CCCCCCCCce
Q 016199           79 YGVLKGPEDLLYDA-HSKLIYTGCED-GWIKRVTLNDSPADSLVHNWINTG----GRPLGIAF-------ANSDPDADRI  145 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~-~g~~L~~~~~~-g~I~~~~~~~~~~~~~~~~~~~~~----~~p~gl~~-------d~~G~~~~~~  145 (393)
                      .+.+..|..|++|| +++.||+.... ++|.+++++++.    +..+...+    .+|.+|++       +++|     +
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~----v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-----~  205 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM----LSSPLNINTIPTNRIRSIAFNKKIEGYADEA-----E  205 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE----EEEEECCTTSSCSBEEEEEECCCBTTTBCTT-----C
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE----EEEEEccCccccCCCcEEEEeecccccCCCC-----C
Confidence            34467899999998 35569988764 579999998876    66554332    36999999       9888     2


Q ss_pred             EEEEEeCCC-------ceEEEeC--Cc-e------EEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehh
Q 016199          146 TMIVADAYK-------GLLKISG--NS-T------VLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDI  208 (393)
Q Consensus       146 ~L~v~~~~~-------gl~~id~--~g-~------~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~  208 (393)
                      .||+++...       .++.++.  +| .      ..+.      .+..++++++++ +|.||+++              
T Consensus       206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd--------------  265 (496)
T 3kya_A          206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNS--------------  265 (496)
T ss_dssp             EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEE--------------
T ss_pred             EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEE--------------
Confidence            499998764       2667753  23 2      1221      245789999999 67999998              


Q ss_pred             cccCCCcEEEEEeCC-------CCeE------------EEE--ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          209 FEGKPNGRLLSFDPV-------TKET------------KVL--VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       209 ~e~~~~g~l~~~d~~-------t~~~------------~~~--~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                         ...+.|++||++       ++..            +.+  ......|.+|+++++|+.+||+++.+++|++++.++.
T Consensus       266 ---~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~  342 (496)
T 3kya_A          266 ---YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI  342 (496)
T ss_dssp             ---TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ---CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence               345789999987       5554            122  1234568899999999999999999999999988753


Q ss_pred             C--Ccceeeeecc--CC------------CCCC-eEEEC-------CCCCEEEEEecCcchhhhhhhcCcchhhhhhhhh
Q 016199          268 N--AGRVEKFIET--LP------------GLPD-NIRYD-------GEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVV  323 (393)
Q Consensus       268 ~--~~~~~~~~~~--l~------------g~P~-~i~~d-------~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~  323 (393)
                      .  ......++..  ..            ..|. ++++|       .+|++||+....                      
T Consensus       343 ~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N----------------------  400 (496)
T 3kya_A          343 KKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN----------------------  400 (496)
T ss_dssp             TTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG----------------------
T ss_pred             cceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCC----------------------
Confidence            2  1111233321  11            2477 78887       789999998754                      


Q ss_pred             hhhCCCCCCCCCceEEEECCCCcEEEEeeC----------------C------CCCccEEEEEe--CCEEEEEecCCCeE
Q 016199          324 RYLGMPPMGKSSSGVFIVDLDGKPIAHYYD----------------P------EMSLISSAIKI--GDHLYCGSVHHRGI  379 (393)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d----------------~------~~~~~~~~~~~--~g~Lyigs~~~~~i  379 (393)
                                  +.|.+++++|.+......                .      .+.....+..+  +|.||++...+..|
T Consensus       401 ------------~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rI  468 (496)
T 3kya_A          401 ------------FCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTI  468 (496)
T ss_dssp             ------------TEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ------------CEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEE
Confidence                        469999999976554332                1      03334444443  39999999999999


Q ss_pred             EEEeCCCCCCC
Q 016199          380 LHLDVNQHPAR  390 (393)
Q Consensus       380 ~~~~~~~~~~~  390 (393)
                      -+++++....+
T Consensus       469 rki~~~~~~~~  479 (496)
T 3kya_A          469 RTISMEQEENV  479 (496)
T ss_dssp             EEEEECCCC--
T ss_pred             EEEECCCCccc
Confidence            99998776544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.73  E-value=4.4e-15  Score=140.86  Aligned_cols=222  Identities=14%  Similarity=0.168  Sum_probs=158.6

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCC-CceEEEeCCc------eEEE
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAY-KGLLKISGNS------TVLL  167 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~~id~~g------~~~l  167 (393)
                      .|+++..+ .|.+++.++..    ..........|.++++|+ ++      +||++|.. ..|++++.++      .+.+
T Consensus         3 ~ll~~~~~-~I~~i~~~~~~----~~~~~~~~~~p~g~~~d~~~~------~ly~~D~~~~~I~~~~~~g~~~~~~~~~~   71 (316)
T 1ijq_A            3 YLFFTNRH-EVRKMTLDRSE----YTSLIPNLRNVVALDTEVASN------RIYWSDLSQRMICSTQLDRAHGVSSYDTV   71 (316)
T ss_dssp             EEEEECBS-SEEEEETTSCC----CEEEECSCSSEEEEEEETTTT------EEEEEETTTTEEEEEEC--------CEEE
T ss_pred             EEEEECCC-eEEEEECCCcc----eEehhcCCCceEEEEEEeCCC------EEEEEECCCCcEEEEECCCCCCCcccEEE
Confidence            35555543 58999988765    444545567899999997 56      89999985 4588898765      1122


Q ss_pred             eeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEcCC
Q 016199          168 TDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLSPD  245 (393)
Q Consensus       168 ~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~d  245 (393)
                      .   . ..+..+.+|++|. +|+||++|                 ...++|.+++++++..+.+.. .+..|++++++|+
T Consensus        72 ~---~-~~~~~p~glavd~~~~~ly~~d-----------------~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~  130 (316)
T 1ijq_A           72 I---S-RDIQAPDGLAVDWIHSNIYWTD-----------------SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV  130 (316)
T ss_dssp             E---C-SSCSCCCEEEEETTTTEEEEEE-----------------TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred             E---e-CCCCCcCEEEEeecCCeEEEEE-----------------CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC
Confidence            1   1 1235678999996 67999998                 345689999998766655543 6788999999998


Q ss_pred             CCEEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhh
Q 016199          246 QTHLVYCETSM-RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVV  323 (393)
Q Consensus       246 g~~l~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~  323 (393)
                      ++.+||++... ++|++++++|..   .+.+....-..|+++++|++ +++|++....                      
T Consensus       131 ~g~ly~~d~~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~----------------------  185 (316)
T 1ijq_A          131 HGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL----------------------  185 (316)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTT----------------------
T ss_pred             CCEEEEEccCCCCeEEEEcCCCCC---eEEEEECCCCCceEEEEeccCCEEEEEECCC----------------------
Confidence            88999999875 899999987642   23333222347999999964 6788887643                      


Q ss_pred             hhhCCCCCCCCCceEEEECCCCcEEEEeeC-C-CCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          324 RYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-P-EMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~-~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                                  +.|.++|.+|+..+.+.. . .......+..++++||++...+..|.+++...
T Consensus       186 ------------~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          186 ------------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             ------------TEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             ------------CeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCC
Confidence                        469999998866555532 2 23333444447899999999999999998643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=8.2e-16  Score=140.80  Aligned_cols=186  Identities=18%  Similarity=0.223  Sum_probs=136.7

Q ss_pred             ccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCC-CceEE
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAY-KGLLK  158 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~  158 (393)
                      ....|.+++++++|+ ||+++.+++|+++++++..    ...+... ...|.+|+++++|      ++|+++.. ++|++
T Consensus        65 ~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~----~~~~~~~~~~~p~~i~~~~~g------~l~v~~~~~~~i~~  133 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNN----QTVLPFDGLNYPEGLAVDTQG------AVYVADRGNNRVVK  133 (270)
T ss_dssp             SCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSC----CEECCCCSCSSEEEEEECTTC------CEEEEEGGGTEEEE
T ss_pred             CcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCce----EeeeecCCcCCCcceEECCCC------CEEEEECCCCEEEE
Confidence            346899999999997 8888778899999988764    3333222 2579999999999      99999864 46888


Q ss_pred             EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccC
Q 016199          159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYF  236 (393)
Q Consensus       159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~  236 (393)
                      ++..+ ..... ..  ..+..+++|+++++|++|+++                 ...++|++||++++..... ...+..
T Consensus       134 ~~~~~~~~~~~-~~--~~~~~p~~i~~~~~g~l~v~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (270)
T 1rwi_B          134 LAAGSKTQTVL-PF--TGLNDPDGVAVDNSGNVYVTD-----------------TDNNRVVKLEAESNNQVVLPFTDITA  193 (270)
T ss_dssp             ECTTCCSCEEC-CC--CSCCSCCCEEECTTCCEEEEE-----------------GGGTEEEEECTTTCCEEECCCSSCCS
T ss_pred             EECCCceeEee-cc--ccCCCceeEEEeCCCCEEEEE-----------------CCCCEEEEEecCCCceEeecccCCCC
Confidence            87654 22221 11  123468899999999999997                 2346899999987665443 234577


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      |.+++++++| .+|+++...++|.+|+.++...   ..........|.++++|++|++|++....
T Consensus       194 p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          194 PWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             EEEEEECTTC-CEEEEETTTSCEEEECTTCSCC---EECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             ceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc---eeeccCCCCCceeEEECCCCCEEEEECCC
Confidence            9999999999 7999999899999999765321   11111111358999999999999998754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.71  E-value=2.6e-15  Score=155.22  Aligned_cols=187  Identities=17%  Similarity=0.165  Sum_probs=146.1

Q ss_pred             CccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCC-CceeeeEECCC-CCCCCceEEEEEeCCC-c
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTG-GRPLGIAFANS-DPDADRITMIVADAYK-G  155 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~-G~~~~~~~L~v~~~~~-g  155 (393)
                      ..+..|.+|++|++++.||+++. +++|+++++++..    .+.+...+ ..|.||++|.. |      +||+++... .
T Consensus        34 ~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~----~~~v~~~g~~~P~GlAvD~~~~------~LY~tD~~~~~  103 (628)
T 4a0p_A           34 TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA----LEHVVEFGLDYPEGMAVDWLGK------NLYWADTGTNR  103 (628)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSCCCEEEEETTTT------EEEEEETTTTE
T ss_pred             CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC----cEEEEeCCCCCcceEEEEeCCC------EEEEEECCCCE
Confidence            34678999999997777887764 7899999998765    55554433 57999999964 6      999999854 4


Q ss_pred             eEEEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      |.+++.+|  .+.+..    ..+..|.+|++|| +|.||++|.+                ..++|++.++++...+.+..
T Consensus       104 I~v~~~dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~  163 (628)
T 4a0p_A          104 IEVSKLDGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVP  163 (628)
T ss_dssp             EEEEETTSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEecCCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEEC
Confidence            88889888  444432    1245688999997 6899999832                14689999999887888888


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ++..|+||+++++++.|||+++..++|.+++++|..   .+.+.+.++ .|.+++++. +++|++.+..
T Consensus       164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~---~~v~~~~l~-~P~glav~~-~~ly~tD~~~  227 (628)
T 4a0p_A          164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN---REVIADDLP-HPFGLTQYQ-DYIYWTDWSR  227 (628)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECCS-CEEEEEEET-TEEEEEETTT
T ss_pred             CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc---eEEeeccCC-CceEEEEEC-CEEEEecCCC
Confidence            899999999999988999999999999999998743   244554444 799999986 6888887643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.68  E-value=8.1e-15  Score=138.89  Aligned_cols=244  Identities=14%  Similarity=0.148  Sum_probs=166.6

Q ss_pred             CCCceEEEecCCCEEEEEec-------CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-C
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-------DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-K  154 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-------~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~  154 (393)
                      .+|.+++++++|+.+|+++.       ++.|+.++.++++    .......+..|.+++++++|     +.+|+++.. +
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~s~dg-----~~l~v~~~~~~  111 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----VTQAIHNDLKPFGATINNTT-----QTLWFGNTVNS  111 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----EEEEEEESSCCCSEEEETTT-----TEEEEEETTTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----EEEEEecCCCcceEEECCCC-----CEEEEEecCCC
Confidence            46888999999999998884       4579999988765    33333345679999999998     258998774 4


Q ss_pred             ceEEEeCCc--e-EEEeeccCC----ccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe
Q 016199          155 GLLKISGNS--T-VLLTDEAEG----QKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE  226 (393)
Q Consensus       155 gl~~id~~g--~-~~l~~~~~g----~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~  226 (393)
                      .|..+|.++  . ..+......    .....+++++++++|+ +|+++.                ...+.|+.+|..+++
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----------------~~~~~i~~~d~~~~~  175 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI----------------GKESVIWVVDGGNIK  175 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE----------------SSSCEEEEEETTTTE
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec----------------CCCceEEEEcCCCCc
Confidence            588888765  2 222111000    0011367899999985 888752                124679999999887


Q ss_pred             EEEEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec---cCCCCCCeEEECCCCC-EEEEEecC
Q 016199          227 TKVLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE---TLPGLPDNIRYDGEGH-YLIALATE  301 (393)
Q Consensus       227 ~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~---~l~g~P~~i~~d~~G~-lwva~~~~  301 (393)
                      ...... ....++++++++||+.+|+++. .+.|..|++...+.  ...+..   .....+.+++++++|+ +|++....
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  252 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKA  252 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence            765554 3456899999999999999876 78999999753321  111211   1223466799999998 66665432


Q ss_pred             cchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEE
Q 016199          302 FSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGIL  380 (393)
Q Consensus       302 r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~  380 (393)
                                                        +.|..+|. +++.+..+..+.... ..+.+++++||+++..++.|.
T Consensus       253 ----------------------------------~~v~~~d~~~~~~~~~~~~~~~~~-~~~s~dg~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          253 ----------------------------------AEVLVVDTRNGNILAKVAAPESLA-VLFNPARNEAYVTHRQAGKVS  297 (353)
T ss_dssp             ----------------------------------SEEEEEETTTCCEEEEEECSSCCC-EEEETTTTEEEEEETTTTEEE
T ss_pred             ----------------------------------CEEEEEECCCCcEEEEEEcCCCce-EEECCCCCEEEEEECCCCeEE
Confidence                                              46888887 577777776544222 223445567999998889999


Q ss_pred             EEeCCCCCC
Q 016199          381 HLDVNQHPA  389 (393)
Q Consensus       381 ~~~~~~~~~  389 (393)
                      .+|+.....
T Consensus       298 ~~d~~~~~~  306 (353)
T 3vgz_A          298 VIDAKSYKV  306 (353)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCeE
Confidence            999876543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.68  E-value=4.7e-15  Score=157.56  Aligned_cols=227  Identities=11%  Similarity=0.170  Sum_probs=160.4

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC---------CCceeeeEECCCCCCCCceE-EEEEeCCC
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT---------GGRPLGIAFANSDPDADRIT-MIVADAYK  154 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~---------~~~p~gl~~d~~G~~~~~~~-L~v~~~~~  154 (393)
                      -.+++.|++|+ ||+|+.+++|.+++++++.    +..+...         .....+++.|++|      + ||||....
T Consensus       359 V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g------~~lWigt~~~  427 (795)
T 4a2l_A          359 VSCIVEDKDKN-LWIGTNDGGLNLYNPITQR----FTSYTLQEDESARGIGSNNIKAVYVDEKK------SLVYIGTHAG  427 (795)
T ss_dssp             EEEEEECTTSC-EEEEESSSCEEEECTTTCC----EEEECCC------CCSCSCEEEEEEETTT------TEEEEEETTT
T ss_pred             eEEEEECCCCC-EEEEECCCCeEEEcCCCCc----EEEEecCCCCcccCCCCccEEEEEEcCCC------CEEEEEeCcC
Confidence            34688888886 9999999889999988765    5555321         2346788999999      9 99998789


Q ss_pred             ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          155 GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       155 gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      ||+++++++  .+.+.......+...+.++..|++|+||++.                  . ++|++||+++++.+.+..
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt------------------~-~Gl~~~~~~~~~~~~~~~  488 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT------------------L-SALVRFNPEQRSFTTIEK  488 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE------------------S-SCEEEEETTTTEEEECCB
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe------------------c-CceeEEeCCCCeEEEccc
Confidence            999999865  4443221111223456788999999999995                  2 469999999888776542


Q ss_pred             C-----c--cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCC----CeEEECCCCCEEEEEe
Q 016199          233 D-----L--YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE--TLPGLP----DNIRYDGEGHYLIALA  299 (393)
Q Consensus       233 ~-----l--~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~--~l~g~P----~~i~~d~~G~lwva~~  299 (393)
                      .     +  .....+..+++| .+|++..  ++|++|+.++.+.    .+..  ...+++    ..|+.|++|++|+++.
T Consensus       489 ~~~~~~~~~~~i~~i~~d~~g-~lWigt~--~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~  561 (795)
T 4a2l_A          489 EKDGTPVVSKQITTLFRDSHK-RLWIGGE--EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTR  561 (795)
T ss_dssp             CTTCCBCCCCCEEEEEECTTC-CEEEEES--SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEES
T ss_pred             cccccccCCceEEEEEECCCC-CEEEEeC--CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC
Confidence            2     1  234567777777 5888765  6899999864322    2210  112233    3577899999999987


Q ss_pred             cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC---CCccEEEEEe-CCEEEEEecC
Q 016199          300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKI-GDHLYCGSVH  375 (393)
Q Consensus       300 ~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~---~~~~~~~~~~-~g~Lyigs~~  375 (393)
                                                          +||+++|++.+.+..+...+   ...+..+.++ +|+||+++  
T Consensus       562 ------------------------------------~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--  603 (795)
T 4a2l_A          562 ------------------------------------EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--  603 (795)
T ss_dssp             ------------------------------------SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--
T ss_pred             ------------------------------------CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--
Confidence                                                46999999888887776432   2334555555 59999996  


Q ss_pred             CCeEEEEeCCC
Q 016199          376 HRGILHLDVNQ  386 (393)
Q Consensus       376 ~~~i~~~~~~~  386 (393)
                      ..+|.+++.+.
T Consensus       604 ~~Gl~~~~~~~  614 (795)
T 4a2l_A          604 NRGISCFNPET  614 (795)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCceEEEcCCC
Confidence            68999999754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.68  E-value=1.3e-14  Score=142.24  Aligned_cols=189  Identities=15%  Similarity=0.136  Sum_probs=133.8

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECC-CCCCCCceEEEEEeCCC-ceE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFAN-SDPDADRITMIVADAYK-GLL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~-gl~  157 (393)
                      +..|.+|++|+.++.||+.+. .++|+++++++.........+.. ....|.||++|. .+      +||+++... .|.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~------~lY~~d~~~~~I~  184 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVS  184 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT------EEEEEETTTTEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC------ceEEEECCCCeEE
Confidence            578999999986667877765 77999999876210000223322 345799999997 67      999999854 588


Q ss_pred             EEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecC
Q 016199          158 KISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSD  233 (393)
Q Consensus       158 ~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~  233 (393)
                      +++++|  .+.+...    .+..|++|++|+ .|.||++|.+.                .++|+++++++...+.+ ..+
T Consensus       185 ~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~~----------------~~~I~~~~~dG~~~~~~~~~~  244 (400)
T 3p5b_L          185 VADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTEN  244 (400)
T ss_dssp             EECTTTCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECSS----------------SCCEEEEETTSCSCEEEECSS
T ss_pred             EEeCCCCceEEEEeC----CCCCcceEEEecccCeEEEEeCCC----------------CCEEEEEeCCCCccEEEEECC
Confidence            889888  3333321    234578999998 57999998321                35799999987665555 456


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEec
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      +..|+||+++++++.|||+++..++|.+++++|..   .+.+...  .-..|.+++++. +++|++.+.
T Consensus       245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~  309 (400)
T 3p5b_L          245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDII  309 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEET-TEEEEEESS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEeC-CEEEEecCC
Confidence            78999999999988999999999999999998642   3334332  124689999975 456666554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.68  E-value=8.3e-15  Score=144.02  Aligned_cols=188  Identities=19%  Similarity=0.185  Sum_probs=133.5

Q ss_pred             cCCCceEEEecCCCEEEEEecCC--eEEEEEcCCCCCcceeeee---ec-CCCceeeeEECC-CCCCCCceEEEEEeCCC
Q 016199           82 LKGPEDLLYDAHSKLIYTGCEDG--WIKRVTLNDSPADSLVHNW---IN-TGGRPLGIAFAN-SDPDADRITMIVADAYK  154 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~~g--~I~~~~~~~~~~~~~~~~~---~~-~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~  154 (393)
                      ...|. ++++++++.||++..++  +|++++.+++..   ...+   .. ....|.++++++ +|      +||+++..+
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g------~lyv~d~~~  240 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA---PTRIGQLGSTFSGKIGAVALDETEE------WLYFVDSNK  240 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC---EEEEEECCTTSCSCCCBCEECTTSS------EEEEECTTC
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce---eEEeeeccchhcCCcEEEEEeCCCC------eEEEEECCC
Confidence            35677 99999999999988755  899999876541   1122   12 356799999999 78      999987756


Q ss_pred             ceEEEeCCc--eEEEee-ccCCccccccc-cEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          155 GLLKISGNS--TVLLTD-EAEGQKFKLTD-GVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       155 gl~~id~~g--~~~l~~-~~~g~~~~~~~-~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                      .|+++++++  ...+.. ...+.....|. ++++++ +|+||++|                 ...++|+++++++. ...
T Consensus       241 ~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d-----------------~~~~~I~~~~~~g~-~~~  302 (409)
T 3hrp_A          241 NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD-----------------QNLSSVYKITPDGE-CEW  302 (409)
T ss_dssp             EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE-----------------TTTTEEEEECTTCC-EEE
T ss_pred             cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe-----------------CCCCEEEEEecCCC-EEE
Confidence            699999876  333311 11121112234 999999 58999998                 44568999998754 444


Q ss_pred             Eec-C--------------ccCCCcEEEcCCCCEEEEEeC-CCCeEEEEEecCCCCcceeeeecc---------C-----
Q 016199          230 LVS-D--------------LYFANGVVLSPDQTHLVYCET-SMRRCRKFYIKGKNAGRVEKFIET---------L-----  279 (393)
Q Consensus       230 ~~~-~--------------l~~~ngi~~s~dg~~l~v~~~-~~~ri~~~~~~g~~~~~~~~~~~~---------l-----  279 (393)
                      +.. .              +..|+|+++++||+ +||+++ .+++|.++++..   +....+...         .     
T Consensus       303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~---G~v~~~~g~~~~~g~~~g~~~~~~  378 (409)
T 3hrp_A          303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILD---GYVSTVAGQVDVASQIDGTPLEAT  378 (409)
T ss_dssp             EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTT---TEEEEEEECTTCBSCCCBSTTTCC
T ss_pred             EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCC---CEEEEEeCCCCCCCcCCCChhceE
Confidence            432 1              56799999999996 999999 999999999532   223333211         0     


Q ss_pred             CCCCCeEEECCCCCEEEEEecC
Q 016199          280 PGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       280 ~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      -..|.++++|++|++||+....
T Consensus       379 ~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          379 FNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             BSSEEEEEECSSSEEEEEESTT
T ss_pred             eCCceEEEEcCCCCEEEEECCC
Confidence            1359999999999999998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.67  E-value=2e-14  Score=140.90  Aligned_cols=223  Identities=13%  Similarity=0.164  Sum_probs=159.9

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCC-ceEEEeCCc-e-----EEE
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYK-GLLKISGNS-T-----VLL  167 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~-gl~~id~~g-~-----~~l  167 (393)
                      .|+++. ...|.++++++..    ...+......|.+|++|+ ++      +||++|... .|++++.+| .     +.+
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~----~~~~~~~~~~~~~l~~d~~~~------~lywsD~~~~~I~~~~~~g~~~~~~~~~~  153 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSE----YTSLIPNLRNVVALDTEVASN------RIYWSDLSQRMICSTQLDRAHGVSSYDTV  153 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCS----CEEEECSCSCEEEEEEETTTT------EEEEEETTTTEEEEEEC------CCCEEE
T ss_pred             eeEEec-cceeEEEccCCcc----eeEeccccCcceEEeeeeccC------ceEEEecCCCeEEEEEcccCCCCCcceEE
Confidence            455544 4579999988765    555555557899999996 56      999999754 588888765 1     222


Q ss_pred             eeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcEEEcCC
Q 016199          168 TDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVVLSPD  245 (393)
Q Consensus       168 ~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi~~s~d  245 (393)
                      .    ...+..+.+|++|. .++||++|                 ...++|.+++++++..+.+. ..+..|++|+++|.
T Consensus       154 ~----~~~~~~p~glavD~~~~~lY~~d-----------------~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~  212 (400)
T 3p5b_L          154 I----SRDIQAPDGLAVDWIHSNIYWTD-----------------SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV  212 (400)
T ss_dssp             E----CSSCSCEEEEEEETTTTEEEEEE-----------------TTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETT
T ss_pred             E----eCCCCCcccEEEEecCCceEEEE-----------------CCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecc
Confidence            1    11234678999997 67999998                 34568999999877666554 46788999999998


Q ss_pred             CCEEEEEeCC-CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC-CCCEEEEEecCcchhhhhhhcCcchhhhhhhhh
Q 016199          246 QTHLVYCETS-MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVV  323 (393)
Q Consensus       246 g~~l~v~~~~-~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~  323 (393)
                      +..|||++.. .++|.+++++|..   ...+....-..|++|++|+ ++++|++....                      
T Consensus       213 ~g~ly~td~~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~~lY~aD~~~----------------------  267 (400)
T 3p5b_L          213 HGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL----------------------  267 (400)
T ss_dssp             TTEEEEEECSSSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT----------------------
T ss_pred             cCeEEEEeCCCCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCCEEEEEECCC----------------------
Confidence            8899999976 4799999998642   2333322224799999995 56788886643                      


Q ss_pred             hhhCCCCCCCCCceEEEECCCCcEEEEeeCC--CCCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          324 RYLGMPPMGKSSSGVFIVDLDGKPIAHYYDP--EMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~--~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                  +.|.++|.+|...+.+...  .......+..++++||++......|.+++....
T Consensus       268 ------------~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          268 ------------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             ------------TEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred             ------------CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence                        4689999988766555432  233344455588999999999999999985433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.67  E-value=1.3e-14  Score=139.90  Aligned_cols=263  Identities=16%  Similarity=0.170  Sum_probs=164.6

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee---ecCCCceeeeEECCC----CCCCCceE
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW---INTGGRPLGIAFANS----DPDADRIT  146 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~---~~~~~~p~gl~~d~~----G~~~~~~~  146 (393)
                      .+.+.++ +..|++|+++++|+ ||++...|+|++++.++.   ..+..+   ......|++|+++++    |      .
T Consensus        21 ~~~va~~-l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~---~~~~~~~v~~~g~~g~~gia~~pdf~~~g------~   89 (354)
T 3a9g_A           21 ISEVASD-LEVPWSIAPLGGGR-YLVTERPGRLVLISPSGK---KLVASFDVANVGEAGLLGLALHPEFPKKS------W   89 (354)
T ss_dssp             EEEEECS-CSCEEEEEEEETTE-EEEEETTTEEEEECSSCE---EEEEECCCCCSTTCSEEEEEECTTTTTSC------E
T ss_pred             EEEEeCC-CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCc---eEeeccceeecCCCceeeEEeCCCCCcCC------E
Confidence            4555554 78999999999996 999999999999974432   112211   112357999999996    7      9


Q ss_pred             EEEEeCC--------CceEEEeCCc-------eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhccc
Q 016199          147 MIVADAY--------KGLLKISGNS-------TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEG  211 (393)
Q Consensus       147 L~v~~~~--------~gl~~id~~g-------~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~  211 (393)
                      |||+...        ..|.+++.++       .+.+..........++++|++++||.||+++......  ....+  ..
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~--~~~~d--~~  165 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADP--RLAQD--LS  165 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCG--GGGTC--TT
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCC--ccccC--CC
Confidence            9999764        5688887543       1223222222223457899999999999996432110  00011  12


Q ss_pred             CCCcEEEEEeCCCC--------eEEEEecCccCCCcEEEcCCCCEEEEEeCCCCe---EEEEEecCCCCcc---------
Q 016199          212 KPNGRLLSFDPVTK--------ETKVLVSDLYFANGVVLSPDQTHLVYCETSMRR---CRKFYIKGKNAGR---------  271 (393)
Q Consensus       212 ~~~g~l~~~d~~t~--------~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r---i~~~~~~g~~~~~---------  271 (393)
                      ...|+|+|+++++.        ..+.+..++..|+|++++++...||++|...++   |.+... |...+-         
T Consensus       166 ~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~  244 (354)
T 3a9g_A          166 SLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGR  244 (354)
T ss_dssp             CCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCC
T ss_pred             CCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCC
Confidence            34578999999854        346677888999999999954479999988765   444431 211110         


Q ss_pred             ---eeeeec--cCCCCCCeEEE-------CCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEE
Q 016199          272 ---VEKFIE--TLPGLPDNIRY-------DGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVF  339 (393)
Q Consensus       272 ---~~~~~~--~l~g~P~~i~~-------d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~  339 (393)
                         ......  ....-|.|+++       +.+|++|++....                                  +.|.
T Consensus       245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~----------------------------------~~v~  290 (354)
T 3a9g_A          245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG----------------------------------SMLA  290 (354)
T ss_dssp             TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT----------------------------------TEEE
T ss_pred             CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC----------------------------------CEEE
Confidence               001110  01124788888       5688999987644                                  4577


Q ss_pred             EECCC--CcEE--EEeeCCC-CCccEEEEEeCCEEEEEecC-CC---------eEEEEeCCC
Q 016199          340 IVDLD--GKPI--AHYYDPE-MSLISSAIKIGDHLYCGSVH-HR---------GILHLDVNQ  386 (393)
Q Consensus       340 ~~d~~--g~~~--~~~~d~~-~~~~~~~~~~~g~Lyigs~~-~~---------~i~~~~~~~  386 (393)
                      +++.+  |++.  +.+-... ..........+|.||+.... ..         .|.|+..+.
T Consensus       291 ~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~~g  352 (354)
T 3a9g_A          291 AVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVSEQ  352 (354)
T ss_dssp             EEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEETT
T ss_pred             EEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEecCC
Confidence            77654  4443  2232222 22333334456899999864 22         799987543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.67  E-value=9.2e-15  Score=155.34  Aligned_cols=226  Identities=15%  Similarity=0.214  Sum_probs=157.9

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-----CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-----TGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-----~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      .+++.|++|+.||+|+.+++|++++++++.    +..+..     .......+..|++|      +||++.. .||++++
T Consensus       409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~~~~~~~~~l~~~~v~~i~~d~~g------~lwigt~-~Gl~~~~  477 (795)
T 4a2l_A          409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VENFNQRNSQLVNENVYAILPDGEG------NLWLGTL-SALVRFN  477 (795)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEEETTTCC----EEEECTTTSCCSCSCEEEEEECSSS------CEEEEES-SCEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EEEeecCCCCcCCCeeEEEEECCCC------CEEEEec-CceeEEe
Confidence            467888888559999998899999988766    665542     12356789999999      9999976 8999999


Q ss_pred             CCc--eEEEeec--cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec----
Q 016199          161 GNS--TVLLTDE--AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS----  232 (393)
Q Consensus       161 ~~g--~~~l~~~--~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~----  232 (393)
                      +++  .+.+...  ..+.....+.++..|++|+||++.                  . ++|++||+++++. .+..    
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt------------------~-~Gl~~~~~~~~~~-~~~~~~~~  537 (795)
T 4a2l_A          478 PEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG------------------E-EGLSVFKQEGLDI-QKASILPV  537 (795)
T ss_dssp             TTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE------------------S-SCEEEEEEETTEE-EECCCSCS
T ss_pred             CCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe------------------C-CceEEEeCCCCeE-EEecCCCC
Confidence            865  3333211  012222456788999999999995                  2 4699999987776 4321    


Q ss_pred             -Cc--cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe----EEECCCCCEEEEEecCcchh
Q 016199          233 -DL--YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN----IRYDGEGHYLIALATEFSTY  305 (393)
Q Consensus       233 -~l--~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~----i~~d~~G~lwva~~~~r~~~  305 (393)
                       ++  ...+.+..+++| .+|++..  ++|++|+.++.   +.+.+. ...|+|++    ++.|++|++|+++.      
T Consensus       538 ~~l~~~~i~~i~~d~~g-~lWigT~--~Gl~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~------  604 (795)
T 4a2l_A          538 SNVTKLFTNCIYEASNG-IIWVGTR--EGFYCFNEKDK---QIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTN------  604 (795)
T ss_dssp             CGGGGSCEEEEEECTTS-CEEEEES--SCEEEEETTTT---EEEEEC-GGGTCSCSCEEEEEECTTSCEEEEET------
T ss_pred             CCCCCCeeEEEEECCCC-CEEEEeC--CCceeECCCCC---cEEEeC-CCCCCchhheEEEEECCCCCEEEEcC------
Confidence             12  234567777777 5787765  38999997533   334332 22345554    77899999999986      


Q ss_pred             hhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-C--C---ccEEEEEeCCEEEEEecCCCeE
Q 016199          306 WDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-M--S---LISSAIKIGDHLYCGSVHHRGI  379 (393)
Q Consensus       306 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~--~---~~~~~~~~~g~Lyigs~~~~~i  379 (393)
                                                    +||.+++++.+.+..|...+ .  .   ..+.....+|+||+|  ..+++
T Consensus       605 ------------------------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g--~~~Gl  652 (795)
T 4a2l_A          605 ------------------------------RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFG--GINGI  652 (795)
T ss_dssp             ------------------------------TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEE--ETTEE
T ss_pred             ------------------------------CceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEe--cCCce
Confidence                                          57999999988888876433 1  1   123334457999999  46789


Q ss_pred             EEEeCCCC
Q 016199          380 LHLDVNQH  387 (393)
Q Consensus       380 ~~~~~~~~  387 (393)
                      .+++.++.
T Consensus       653 ~~~~p~~~  660 (795)
T 4a2l_A          653 TTFRPELL  660 (795)
T ss_dssp             EEECGGGC
T ss_pred             EEEcHHHc
Confidence            99987543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=9.2e-15  Score=155.04  Aligned_cols=227  Identities=12%  Similarity=0.067  Sum_probs=158.8

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec---CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN---TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~---~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      .+++.|++|+ ||+|+.+++|++++++++.    ++.+..   .......++.|++|      +||++.. .||++++++
T Consensus       410 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~g------~lwigt~-~Gl~~~~~~  477 (781)
T 3v9f_A          410 LCSLKDSEGN-LWFGTYLGNISYYNTRLKK----FQIIELEKNELLDVRVFYEDKNK------KIWIGTH-AGVFVIDLA  477 (781)
T ss_dssp             EEEEECTTSC-EEEEETTEEEEEECSSSCE----EEECCSTTTCCCCEEEEEECTTS------EEEEEET-TEEEEEESS
T ss_pred             EEEEECCCCC-EEEEeccCCEEEEcCCCCc----EEEeccCCCCCCeEEEEEECCCC------CEEEEEC-CceEEEeCC
Confidence            4577888886 9999988889999987665    555532   13457889999999      9999976 899999986


Q ss_pred             c--eEEEeecc-CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--cc--
Q 016199          163 S--TVLLTDEA-EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LY--  235 (393)
Q Consensus       163 g--~~~l~~~~-~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~--  235 (393)
                      +  .+.+.... .......+.++.+|++|+||++.                  ..++|++||+++++.+.+...  +.  
T Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt------------------~~~Gl~~~~~~~~~~~~~~~~~~l~~~  539 (781)
T 3v9f_A          478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT------------------FGGGVGIYTPDMQLVRKFNQYEGFCSN  539 (781)
T ss_dssp             SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE------------------SSSCEEEECTTCCEEEEECTTTTCSCS
T ss_pred             CCeEEecccCcccccccceeEEEEEcCCCCEEEEE------------------cCCCEEEEeCCCCeEEEccCCCCCCCC
Confidence            5  33332111 11112456789999999999995                  234699999998888776432  22  


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeE-EEEEecCCCCcceeeeeccCCCCC----CeEEECCCCCEEEEEecCcchhhhhhh
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRC-RKFYIKGKNAGRVEKFIETLPGLP----DNIRYDGEGHYLIALATEFSTYWDLAY  310 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri-~~~~~~g~~~~~~~~~~~~l~g~P----~~i~~d~~G~lwva~~~~r~~~~~~~~  310 (393)
                      ....+..+++| .+|++..  +++ ++|+.++.   +.+.+. ...|+|    .+++.|++|++|+++.           
T Consensus       540 ~i~~i~~d~~g-~lWi~T~--~Glv~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lW~~t~-----------  601 (781)
T 3v9f_A          540 TINQIYRSSKG-QMWLATG--EGLVCFPSARNF---DYQVFQ-RKEGLPNTHIRAISEDKNGNIWASTN-----------  601 (781)
T ss_dssp             CEEEEEECTTS-CEEEEET--TEEEEESCTTTC---CCEEEC-GGGTCSCCCCCEEEECSSSCEEEECS-----------
T ss_pred             eeEEEEECCCC-CEEEEEC--CCceEEECCCCC---cEEEcc-ccCCCCCceEEEEEECCCCCEEEEcC-----------
Confidence            23466677777 5777765  567 99986533   333332 122333    4688999999999986           


Q ss_pred             cCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC------CCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          311 RYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE------MSLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       311 ~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~------~~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                               +||.+++++.+.+..|...+      +...+.....+|+||+|+  .+++.+++.
T Consensus       602 -------------------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~--~~Gl~~f~p  654 (781)
T 3v9f_A          602 -------------------------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGS--INGLCFFNP  654 (781)
T ss_dssp             -------------------------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEE--TTEEEEECS
T ss_pred             -------------------------CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEEC--CCceEEECh
Confidence                                     56999999988888886432      112233444579999995  678999987


Q ss_pred             CCC
Q 016199          385 NQH  387 (393)
Q Consensus       385 ~~~  387 (393)
                      +..
T Consensus       655 ~~~  657 (781)
T 3v9f_A          655 DIA  657 (781)
T ss_dssp             CCG
T ss_pred             hhc
Confidence            653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.66  E-value=5.4e-15  Score=136.91  Aligned_cols=184  Identities=13%  Similarity=0.155  Sum_probs=132.9

Q ss_pred             ccCCCceEEEe-cCCCEEEEEec--CCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCC-Cc
Q 016199           81 VLKGPEDLLYD-AHSKLIYTGCE--DGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAY-KG  155 (393)
Q Consensus        81 ~~~~Pe~ia~d-~~g~~L~~~~~--~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~g  155 (393)
                      .+..|.+++++ ++| .||++..  +++|.+++.++..    ...+.. ....|.+++++++|      ++|+++.. ..
T Consensus        75 ~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g~~----~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~  143 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQYGQF----VRKFGATILQHPRGVTVDNKG------RIIVVECKVMR  143 (286)
T ss_dssp             CBSSEEEEEEETTTT-EEEEEECGGGCEEEEECTTSCE----EEEECTTTCSCEEEEEECTTS------CEEEEETTTTE
T ss_pred             cccCceEEEEEcCCC-eEEEEcCCCCCEEEEECCCCcE----EEEecCccCCCceEEEEeCCC------CEEEEECCCCE
Confidence            45679999995 566 5888874  7899999966543    444432 23469999999999      99999874 45


Q ss_pred             eEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      |.++++++  ...+...   ..+..+++|+++++|++|+++                 ...++|++||+.++.+..+...
T Consensus       144 i~~~~~~g~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~-----------------~~~~~i~~~~~~g~~~~~~~~~  203 (286)
T 1q7f_A          144 VIIFDQNGNVLHKFGCS---KHLEFPNGVVVNDKQEIFISD-----------------NRAHCVKVFNYEGQYLRQIGGE  203 (286)
T ss_dssp             EEEECTTSCEEEEEECT---TTCSSEEEEEECSSSEEEEEE-----------------GGGTEEEEEETTCCEEEEESCT
T ss_pred             EEEEcCCCCEEEEeCCC---CccCCcEEEEECCCCCEEEEE-----------------CCCCEEEEEcCCCCEEEEEccC
Confidence            99999887  2222111   123457899999999999997                 3346899999976655555432


Q ss_pred             --ccCCCcEEEcCCCCEEEEEeCCCC-eEEEEEecCCCCcceeeeeccCC-CCCCeEEECCCCCEEEEEe
Q 016199          234 --LYFANGVVLSPDQTHLVYCETSMR-RCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       234 --l~~~ngi~~s~dg~~l~v~~~~~~-ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d~~G~lwva~~  299 (393)
                        +..|.++++++|| .+|+++...+ +|.+|+.++..   ...+..... ..|.+++++++|++|++..
T Consensus       204 g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          204 GITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             TTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred             CccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCE---EEEEcccCCCCcceeEEECCCCcEEEECC
Confidence              4679999999999 6899998876 99999965432   222322222 2477899999999999854

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=2.9e-14  Score=151.23  Aligned_cols=228  Identities=13%  Similarity=0.154  Sum_probs=158.4

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec----------CCCceeeeEECCCCCCCCceEEEEEeCCCc
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN----------TGGRPLGIAFANSDPDADRITMIVADAYKG  155 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~----------~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g  155 (393)
                      .+++.|.+|+ ||+|+.+++|.++++....    +..+..          ......+++.|++|      +||||+...|
T Consensus       316 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g------~lWigt~~~G  384 (781)
T 3v9f_A          316 RYIFQDSFNN-IWIGTWGGGINFISNAPPT----FHTWSYSPTQMNESSLSNKVVSSVCDDGQG------KLWIGTDGGG  384 (781)
T ss_dssp             EEEEECSSCC-EEEEEBSSCEEEECSSCCS----CEEEC----CCCSSCCSSSCEEEEEECTTS------CEEEEEBSSC
T ss_pred             EEEEEeCCCC-EEEEecCCeEEEeCCCCCc----ceeeccCccccccCCCCCcceEEEEEcCCC------CEEEEeCCCc
Confidence            4688999986 9999988889999987655    444421          12346789999999      9999987889


Q ss_pred             eEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      |+++++++  .+.+. ...+.....+.++..|++|+||++.                  ..++|++||+.+++.+.+...
T Consensus       385 l~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~d~~g~lWigt------------------~~~Gl~~~~~~~~~~~~~~~~  445 (781)
T 3v9f_A          385 INVFENGKRVAIYNK-ENRELLSNSVLCSLKDSEGNLWFGT------------------YLGNISYYNTRLKKFQIIELE  445 (781)
T ss_dssp             EEEEETTEEEEECC------CCCSBEEEEEECTTSCEEEEE------------------TTEEEEEECSSSCEEEECCST
T ss_pred             EEEEECCCCeEEEcc-CCCCCCCcceEEEEECCCCCEEEEe------------------ccCCEEEEcCCCCcEEEeccC
Confidence            99999875  22221 1112222456788999999999994                  346899999998887766432


Q ss_pred             ---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-----CCCCCeEEECCCCCEEEEEecCcchh
Q 016199          234 ---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-----PGLPDNIRYDGEGHYLIALATEFSTY  305 (393)
Q Consensus       234 ---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-----~g~P~~i~~d~~G~lwva~~~~r~~~  305 (393)
                         ......+..+++| .+|++..  ++|++|+.++.+   .+.+....     ......++.|++|++|+++..     
T Consensus       446 ~~~~~~v~~i~~d~~g-~lwigt~--~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-----  514 (781)
T 3v9f_A          446 KNELLDVRVFYEDKNK-KIWIGTH--AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-----  514 (781)
T ss_dssp             TTCCCCEEEEEECTTS-EEEEEET--TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-----
T ss_pred             CCCCCeEEEEEECCCC-CEEEEEC--CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCCEEEEEcC-----
Confidence               1234556667666 6888765  789999975432   22222111     123456889999999999873     


Q ss_pred             hhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC---CCccEEEEEe-CCEEEEEecCCCeE-E
Q 016199          306 WDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKI-GDHLYCGSVHHRGI-L  380 (393)
Q Consensus       306 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~---~~~~~~~~~~-~g~Lyigs~~~~~i-~  380 (393)
                                                    +||+++|++++.+..+....   ...+..+.++ +|+||+|+.  .++ .
T Consensus       515 ------------------------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~Glv~  562 (781)
T 3v9f_A          515 ------------------------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--EGLVC  562 (781)
T ss_dssp             ------------------------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--TEEEE
T ss_pred             ------------------------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--CCceE
Confidence                                          36999999888887776433   2345555554 699999964  678 8


Q ss_pred             EEeCCC
Q 016199          381 HLDVNQ  386 (393)
Q Consensus       381 ~~~~~~  386 (393)
                      +++.+.
T Consensus       563 ~~d~~~  568 (781)
T 3v9f_A          563 FPSARN  568 (781)
T ss_dssp             ESCTTT
T ss_pred             EECCCC
Confidence            887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.66  E-value=1.6e-14  Score=139.24  Aligned_cols=208  Identities=16%  Similarity=0.181  Sum_probs=134.1

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee------cCCCceeeeEECCC----CCCCC
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI------NTGGRPLGIAFANS----DPDAD  143 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~------~~~~~p~gl~~d~~----G~~~~  143 (393)
                      .+.+.++ +..|++|+++++|+ ||++...|+|++++ ++ .    .+.+.      .....|++|+++++    |    
T Consensus        23 ~~~va~~-l~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~g-~----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g----   90 (352)
T 2ism_A           23 VEEVVGG-LEVPWALAFLPDGG-MLIAERPGRIRLFR-EG-R----LSTYAELSVYHRGESGLLGLALHPRFPQEP----   90 (352)
T ss_dssp             EEEEECC-CSCEEEEEECTTSC-EEEEETTTEEEEEE-TT-E----EEEEEECCCCCSTTCSEEEEEECTTTTTSC----
T ss_pred             EEEEECC-CCCceEEEEcCCCe-EEEEeCCCeEEEEE-CC-C----ccEeecceEeecCCCCceeEEECCCCCCCC----
Confidence            4455554 68999999999997 99999899999998 43 2    22221      12357999999997    7    


Q ss_pred             ceEEEEEeCC------CceEEEeCCc-----eEEEeeccC--CccccccccEEEcCCCcEEEEeCCCccchhhheehhcc
Q 016199          144 RITMIVADAY------KGLLKISGNS-----TVLLTDEAE--GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFE  210 (393)
Q Consensus       144 ~~~L~v~~~~------~gl~~id~~g-----~~~l~~~~~--g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e  210 (393)
                        .|||++..      ..|.+++.++     .+.+.....  ......+++|++++||.||+++......  ....+  .
T Consensus        91 --~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~--~~~~d--~  164 (352)
T 2ism_A           91 --YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYER--ELAQD--L  164 (352)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCG--GGGGC--T
T ss_pred             --EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCC--ccccC--C
Confidence              89999764      5688887653     122322222  2223467899999999999997432111  11111  1


Q ss_pred             cCCCcEEEEEeCCC-------------CeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCe--------EEEEEecCCCC
Q 016199          211 GKPNGRLLSFDPVT-------------KETKVLVSDLYFANGVVLSPDQTHLVYCETSMRR--------CRKFYIKGKNA  269 (393)
Q Consensus       211 ~~~~g~l~~~d~~t-------------~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r--------i~~~~~~g~~~  269 (393)
                      ....|+|+|+++++             ...+.+..++..|+|++++++...||++|...++        |.++.. |...
T Consensus       165 ~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~ny  243 (352)
T 2ism_A          165 ASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNY  243 (352)
T ss_dssp             TCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBC
T ss_pred             CCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcC
Confidence            23457999999975             2445567778889999999955579999988776        544432 2211


Q ss_pred             cc------------eeeeeccC-CCCCCeEEECCCCCEEEEEecC
Q 016199          270 GR------------VEKFIETL-PGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       270 ~~------------~~~~~~~l-~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +.            ......-. ...|.|+++ .+|++|++....
T Consensus       244 Gwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~  287 (352)
T 2ism_A          244 GWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRG  287 (352)
T ss_dssp             CTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTT
T ss_pred             CCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCC
Confidence            10            00011000 124788998 578999987644

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.66  E-value=4.2e-14  Score=134.33  Aligned_cols=225  Identities=14%  Similarity=0.122  Sum_probs=157.6

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCC-ceEEEeCCc-e--EEEeec
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYK-GLLKISGNS-T--VLLTDE  170 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~-gl~~id~~g-~--~~l~~~  170 (393)
                      .|+++. ...|.++++++....  ..........+.+++++. +|      +||++|... .|.+++++| .  +.+.. 
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~--~~~~~~~~~~~~~ld~d~~~~------~lyw~D~~~~~I~r~~~~g~~~~~~~~~-   75 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKEN--ATIVVGGLEDAAAVDFVFSHG------LIYWSDVSEEAIKRTEFNKTESVQNVVV-   75 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSC--CEEEEEEEEEEEEEEEEGGGT------EEEEEETTTTEEEEEETTSSSCCCEEEE-
T ss_pred             EEEEEc-cCeEEEEECCCCceE--EEEEecCCCccEEEEEEeCCC------EEEEEECCCCcEEEEEccCCCceEEEEc-
Confidence            355544 346899998865300  111111124578899986 57      999999754 488998877 2  22221 


Q ss_pred             cCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcEEEcCCCCE
Q 016199          171 AEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVVLSPDQTH  248 (393)
Q Consensus       171 ~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi~~s~dg~~  248 (393)
                         ..+..+.++++|. +|+||++|                 ...++|.++++++...+.+. ..+..|+++++++++..
T Consensus        76 ---~~l~~p~glavd~~~g~ly~~d-----------------~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~  135 (318)
T 3sov_A           76 ---SGLLSPDGLACDWLGEKLYWTD-----------------SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF  135 (318)
T ss_dssp             ---ECCSCCCEEEEETTTTEEEEEE-----------------TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTE
T ss_pred             ---CCCCCccEEEEEcCCCeEEEEE-----------------CCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCE
Confidence               1234578999996 67999998                 34568999999876655554 66888999999998779


Q ss_pred             EEEEeCC-CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC-CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhh
Q 016199          249 LVYCETS-MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYL  326 (393)
Q Consensus       249 l~v~~~~-~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~  326 (393)
                      +||++.. .++|++++++|..   .+.+....-..|++|++|+ ++++|++....                         
T Consensus       136 ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~-------------------------  187 (318)
T 3sov_A          136 MYWTDWGEVPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADAKL-------------------------  187 (318)
T ss_dssp             EEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT-------------------------
T ss_pred             EEEEecCCCCEEEEEEcCCCC---eEEEEECCCCCccEEEEeccCCEEEEEECCC-------------------------
Confidence            9999975 6899999988642   2333322224799999997 57799987643                         


Q ss_pred             CCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          327 GMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       327 ~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                               +.|.++|.+|...+.+..........+..++++||.+...+..|.+++....
T Consensus       188 ---------~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          188 ---------NFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             ---------TEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             ---------CEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence                     4699999988766655543333334445578999999999999999997433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.64  E-value=6.5e-14  Score=147.88  Aligned_cols=223  Identities=13%  Similarity=0.164  Sum_probs=160.0

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCCc-eEEEeCCce------EEE
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYKG-LLKISGNST------VLL  167 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~g-l~~id~~g~------~~l  167 (393)
                      .|++... ..|.+++.++..    ...+......|.+|+++. ++      +||+++...+ |++++.+|.      +.+
T Consensus       397 ~Ll~an~-~~Ir~i~l~~~~----~~~l~~~~~~~~gl~~d~~~~------~lY~sD~~~~~I~~~~l~g~~~~~~~~~v  465 (791)
T 3m0c_C          397 YLFFTNR-HEVRKMTLDRSE----YTSLIPNLRNVVALDTEVASN------RIYWSDLSQRMICSTQLDRAHGVSSYDTV  465 (791)
T ss_dssp             EEEEECB-SSEEEECTTSCC----CEEEECSCSSEEEEEEETTTT------EEEEEETTTTEEEEEEC--------CEEE
T ss_pred             ccccccc-cceeEeeccCCc----ceeeecCCCceEEEeecccCC------eeEEeeccceeEEEEeccCCCCCcceeEE
Confidence            4555543 358888887655    555555456799999997 67      9999998654 888887651      122


Q ss_pred             eeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcEEEcCC
Q 016199          168 TDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVVLSPD  245 (393)
Q Consensus       168 ~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi~~s~d  245 (393)
                      .    ...+..+.+|++|..+ +||++|                 ...++|.+++++++..+.+. ..+..|++|++++.
T Consensus       466 i----~~~l~~P~GLAvD~~~~~LY~tD-----------------~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~  524 (791)
T 3m0c_C          466 I----SRDIQAPDGLAVDWIHSNIYWTD-----------------SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV  524 (791)
T ss_dssp             E----CSSCSCCCEEEEETTTTEEEEEE-----------------TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred             E----ecCCCCcceeeeeecCCcEEEEe-----------------cCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecC
Confidence            1    1124568899999765 999998                 44568999999877666654 46788999999998


Q ss_pred             CCEEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCeEEEC-CCCCEEEEEecCcchhhhhhhcCcchhhhhhhhh
Q 016199          246 QTHLVYCETSM-RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD-GEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVV  323 (393)
Q Consensus       246 g~~l~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d-~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~  323 (393)
                      +..|||++... .+|.+++++|..   ...++...-..|.+|++| .+|+||++....                      
T Consensus       525 ~g~LYwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~----------------------  579 (791)
T 3m0c_C          525 HGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL----------------------  579 (791)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTT----------------------
T ss_pred             CCCEEEecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCCC----------------------
Confidence            88999999876 899999998642   333443323479999999 567788887533                      


Q ss_pred             hhhCCCCCCCCCceEEEECCCCcEEEEeeCC--CCCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          324 RYLGMPPMGKSSSGVFIVDLDGKPIAHYYDP--EMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~--~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                  +.|.+++.+|.....+...  .......+...+++||++......|.+++....
T Consensus       580 ------------~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          580 ------------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             ------------TEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             ------------CcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence                        4689999998766655432  233344455578999999999999999985433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=9.2e-15  Score=138.97  Aligned_cols=195  Identities=13%  Similarity=0.168  Sum_probs=131.3

Q ss_pred             EecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec---------CCCceeeeEECC-CCCCCCce
Q 016199           77 VGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN---------TGGRPLGIAFAN-SDPDADRI  145 (393)
Q Consensus        77 l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~---------~~~~p~gl~~d~-~G~~~~~~  145 (393)
                      .+.+.+..|.+++++++|+ ||++.. +++|+++++++....  +..+..         ....|.+|++++ +|      
T Consensus        85 ~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~--~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g------  155 (329)
T 3fvz_A           85 SGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGP--LLILGRSMQPGSDQNHFCQPTDVAVEPSTG------  155 (329)
T ss_dssp             ECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCC--SEEESBTTBCCCSTTCCSSEEEEEECTTTC------
T ss_pred             cCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEE--EEEecccCCCCCCccccCCCcEEEEeCCCC------
Confidence            3345667999999999998 776654 789999998765200  233311         123699999999 88      


Q ss_pred             EEEEEeC--CCceEEEeCCc--eEEEeeccC-----CccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCc
Q 016199          146 TMIVADA--YKGLLKISGNS--TVLLTDEAE-----GQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNG  215 (393)
Q Consensus       146 ~L~v~~~--~~gl~~id~~g--~~~l~~~~~-----g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g  215 (393)
                      +|||++.  ...|.+++++|  ...+.....     ...+..|++|+++++ |+||++|                 ...+
T Consensus       156 ~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d-----------------~~~~  218 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD-----------------RENG  218 (329)
T ss_dssp             CEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE-----------------TTTT
T ss_pred             eEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE-----------------CCCC
Confidence            9999995  45689999888  333322111     123567899999998 8999998                 4467


Q ss_pred             EEEEEeCCCCeEEEEec-C--ccCCCcEEEcC------CCCEEEEEeCCCCeEEEEEecCCCCcceeeeec---cCCCCC
Q 016199          216 RLLSFDPVTKETKVLVS-D--LYFANGVVLSP------DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE---TLPGLP  283 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~~~-~--l~~~ngi~~s~------dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~---~l~g~P  283 (393)
                      +|.+||+++++...... .  ...+.+++++|      +|+ +|+++....++.++++..   ++......   .....|
T Consensus       219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~---g~~~~~~~~~~~~~~~p  294 (329)
T 3fvz_A          219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSS---GEIIDVFKPVRKHFDMP  294 (329)
T ss_dssp             EEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTT---CCEEEEECCSSSCCSSE
T ss_pred             EEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCC---CeEEEEEcCCCCccCCe
Confidence            89999998665443321 1  12234445555      663 666667777999999642   22222211   122368


Q ss_pred             CeEEECCCCCEEEEEecC
Q 016199          284 DNIRYDGEGHYLIALATE  301 (393)
Q Consensus       284 ~~i~~d~~G~lwva~~~~  301 (393)
                      .+|++|++|++||+....
T Consensus       295 ~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          295 HDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             EEEEECTTSEEEEEESSS
T ss_pred             eEEEECCCCCEEEEECCC
Confidence            999999999999998754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.64  E-value=2.7e-14  Score=147.41  Aligned_cols=189  Identities=16%  Similarity=0.215  Sum_probs=134.7

Q ss_pred             CccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECC-CCCCCCceEEEEEeCCCc-
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFAN-SDPDADRITMIVADAYKG-  155 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~-~G~~~~~~~L~v~~~~~g-  155 (393)
                      ..+..|.+|++++.++.||+++. .++|+++++++...   .+.+... ...|.||++|. .+      +||+++...+ 
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---~~~v~~~~~~~P~GlAvD~~~~------~ly~~d~~~~~  107 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---VQNVVVSGLLSPDGLACDWLGE------KLYWTDSETNR  107 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCEEEEEEETTTT------EEEEEETTTTE
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---eEEEEeCCCCCcCeEEEEecCC------EEEEEeCCCCE
Confidence            34678999999987777887765 67999999886530   1233222 25799999998 56      8999998654 


Q ss_pred             eEEEeCCc--eEEEeeccCCccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-
Q 016199          156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-  231 (393)
Q Consensus       156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-  231 (393)
                      |.+++.+|  .+.+..    ..+..|++|++|+. |.||++|.+.                .++|++.++++...+.+. 
T Consensus       108 I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~----------------~~~I~r~~~dG~~~~~l~~  167 (619)
T 3s94_A          108 IEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE----------------VPKIERAGMDGSSRFIIIN  167 (619)
T ss_dssp             EEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEEC
T ss_pred             EEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccCC----------------CCEEEEEECCCCceEEEEe
Confidence            77889988  344432    22456889999985 7999998321                358999999876555554 


Q ss_pred             cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          232 SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       232 ~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ..+..|+||+++++++.|||+++..++|.+++++|..   .+.+.......|.+|+++++ ++|++.+..
T Consensus       168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gi~~~~~-~ly~td~~~  233 (619)
T 3s94_A          168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFED-ILYWTDWST  233 (619)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE---EC---------CCCEEESSS-EEEEECTTT
T ss_pred             CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCCCCceEEEEeCC-EEEEecCCC
Confidence            5688999999999988999999999999999998742   23333322347999999876 788877643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.63  E-value=8.5e-14  Score=143.74  Aligned_cols=187  Identities=16%  Similarity=0.156  Sum_probs=140.1

Q ss_pred             ccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECC-CCCCCCceEEEEEeCCCc-e
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFAN-SDPDADRITMIVADAYKG-L  156 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~-~G~~~~~~~L~v~~~~~g-l  156 (393)
                      .+..|.++++|+.++.||+++. .++|+++++++..    .+.+... ...|.||++|. .+      +||++|...+ |
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~----~~~v~~~~~~~p~GlAvD~~~~------~lY~tD~~~~~I  416 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG----SQFVVTAQIAHPDGIAVDWVAR------NLYWTDTGTDRI  416 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEE
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc----cEEEEECCCCCcCceEEecccC------cEEEEeCCCCcE
Confidence            3567889999986667887764 7799999998755    4444432 36799999996 66      9999998654 7


Q ss_pred             EEEeCCc--eEEEeeccCCccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-c
Q 016199          157 LKISGNS--TVLLTDEAEGQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-S  232 (393)
Q Consensus       157 ~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~  232 (393)
                      .+++.+|  .+.+...    .+..|.+|++|+. |.||++|.+.                ..+|++.++++...+.+. .
T Consensus       417 ~v~~~~G~~~~~l~~~----~l~~P~~iavdp~~G~ly~tD~g~----------------~~~I~r~~~dG~~~~~l~~~  476 (619)
T 3s94_A          417 EVTRLNGTMRKILISE----DLEEPRAIVLDPMVGYMYWTDWGE----------------IPKIERAALDGSDRVVLVNT  476 (619)
T ss_dssp             EEEETTSCSCEEEECT----TCCSEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECS
T ss_pred             EEEeCCCCeEEEEEEC----CCCCeeeEEEEcCCCcEEEecCCC----------------CCEEEEEccCCCccEEEEeC
Confidence            7788888  3444321    3566889999985 8999998432                357999998866555554 4


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      .+..|+|++++++++.|||+++..++|.+++++|..   .+.+.......|.+++++.+ ++|++.+..
T Consensus       477 ~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glav~~~-~ly~tD~~~  541 (619)
T 3s94_A          477 SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG---RRVLVEDKIPHIFGFTLLGD-YVYWTDWQR  541 (619)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEEECCCCSSCCEEEETT-EEEEECTTS
T ss_pred             CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc---eEEEeccCCCCcEEEEEECC-EEEEeecCC
Confidence            588999999999888999999999999999998753   23333222347999999855 788887643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.62  E-value=1e-13  Score=130.45  Aligned_cols=191  Identities=15%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             cCccCCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCC--------CceeeeEE---CCCCCCCCceE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTG--------GRPLGIAF---ANSDPDADRIT  146 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~--------~~p~gl~~---d~~G~~~~~~~  146 (393)
                      ......||+++||+..+++|+++ ..++|.+++++++.    .+.+....        ..+.||.+   |++|      +
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~----~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g------r   78 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS----HFNVVIDGASSNGDGEQQMSGLSLLTHDNSK------R   78 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC----EEEECCTTTCCSSCCSEEEEEEEESSSSSCC------E
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe----EEEEecCCccccCCCcceeeEEEEeccCCCC------c
Confidence            34457899999998777899998 58999999998654    33331111        14789999   7899      9


Q ss_pred             EEEE-eC-------------CCceEEEeCC----c-eEEEeec---cC------CccccccccEEEcCCCcEEEEeCCCc
Q 016199          147 MIVA-DA-------------YKGLLKISGN----S-TVLLTDE---AE------GQKFKLTDGVDVADDGMIYFTDASNK  198 (393)
Q Consensus       147 L~v~-~~-------------~~gl~~id~~----g-~~~l~~~---~~------g~~~~~~~~l~~d~dG~l~~td~~~~  198 (393)
                      |||+ +.             ...|.++|.+    + .....+.   .+      +.....++++++|++|++|++++   
T Consensus        79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s---  155 (334)
T 2p9w_A           79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA---  155 (334)
T ss_dssp             EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE---
T ss_pred             EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC---
Confidence            9995 31             3458899977    4 2222211   11      11334589999999999999973   


Q ss_pred             cchhhheehhcccCCC-cEEEEEeCCCCeEEEEec------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc
Q 016199          199 YYLREYILDIFEGKPN-GRLLSFDPVTKETKVLVS------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR  271 (393)
Q Consensus       199 ~~~~~~~~~~~e~~~~-g~l~~~d~~t~~~~~~~~------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~  271 (393)
                                    .. +.|+++++++........      ....+|||+++|||+.|++.++ .++|++|+++...  .
T Consensus       156 --------------~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv--~  218 (334)
T 2p9w_A          156 --------------LGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPY--A  218 (334)
T ss_dssp             --------------ESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSS--C
T ss_pred             --------------CCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCc--c
Confidence                          23 679999999765554321      1345789999999999999998 9999999986321  1


Q ss_pred             eeeeec--c---CCCCCCeE-EECCCCCE-EEEEe
Q 016199          272 VEKFIE--T---LPGLPDNI-RYDGEGHY-LIALA  299 (393)
Q Consensus       272 ~~~~~~--~---l~g~P~~i-~~d~~G~l-wva~~  299 (393)
                      .++-..  +   ....|++| ....+|++ +|+..
T Consensus       219 ~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          219 WPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             CCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             eeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence            011111  1   11247885 66778987 66654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.61  E-value=2.8e-13  Score=127.40  Aligned_cols=221  Identities=13%  Similarity=0.168  Sum_probs=144.8

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEE
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLL  167 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l  167 (393)
                      .+++ ++ .||+++.+++|++++.+ +.  . ...+.........++.+++|      ++|++...++|+.++++|....
T Consensus       103 ~~~~-~~-~l~v~t~~~~l~~~d~~-g~--~-~~~~~~~~~~~~~~~~~~~g------~l~vgt~~~~l~~~d~~g~~~~  170 (330)
T 3hxj_A          103 FTIF-ED-ILYVTSMDGHLYAINTD-GT--E-KWRFKTKKAIYATPIVSEDG------TIYVGSNDNYLYAINPDGTEKW  170 (330)
T ss_dssp             EEEE-TT-EEEEECTTSEEEEECTT-SC--E-EEEEECSSCCCSCCEECTTS------CEEEECTTSEEEEECTTSCEEE
T ss_pred             ceEE-CC-EEEEEecCCEEEEEcCC-CC--E-EEEEcCCCceeeeeEEcCCC------EEEEEcCCCEEEEECCCCCEeE
Confidence            3444 55 69999999999999987 33  0 22222222334567888899      9999977789999998872111


Q ss_pred             eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC
Q 016199          168 TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT  247 (393)
Q Consensus       168 ~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~  247 (393)
                      ......   .....+.+|++|.+|++                  +  ++|+++|+.+...............++++++| 
T Consensus       171 ~~~~~~---~~~~~~~~d~~g~l~v~------------------t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g-  226 (330)
T 3hxj_A          171 RFKTND---AITSAASIGKDGTIYFG------------------S--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDG-  226 (330)
T ss_dssp             EEECSS---CCCSCCEECTTCCEEEE------------------S--SSEEEECTTSCEEEEECCSSCCCSCCEECTTS-
T ss_pred             EEecCC---CceeeeEEcCCCEEEEE------------------e--CEEEEECCCCcEEEEEccCCcceeceEECCCC-
Confidence            111211   23557789999999998                  3  57999995433433333333456778888887 


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhC
Q 016199          248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLG  327 (393)
Q Consensus       248 ~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~  327 (393)
                      .+|++.. .++|++++.++..   ...+. .....+..+.+|++|++|+++..                           
T Consensus       227 ~l~v~t~-~~gl~~~~~~g~~---~~~~~-~~~~~~~~~~~~~~g~l~v~t~~---------------------------  274 (330)
T 3hxj_A          227 TIYVTSL-DGHLYAINPDGTE---KWRFK-TGKRIESSPVIGNTDTIYFGSYD---------------------------  274 (330)
T ss_dssp             CEEEEET-TTEEEEECTTSCE---EEEEE-CSSCCCSCCEECTTSCEEEECTT---------------------------
T ss_pred             eEEEEcC-CCeEEEECCCCCE---eEEee-CCCCccccceEcCCCeEEEecCC---------------------------
Confidence            5777654 6789999754432   22222 22234567888999999999873                           


Q ss_pred             CCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          328 MPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       328 ~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                              ++|+++|++|+.+..+..+.....+.+...+|+||+|+  .+++.++...+
T Consensus       275 --------ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt--~~G~~~~~~~~  323 (330)
T 3hxj_A          275 --------GHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFGT--RNGKFYALFNL  323 (330)
T ss_dssp             --------CEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEEC--TTSCEEEEEC-
T ss_pred             --------CCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEEc--CCCeEEEEecc
Confidence                    47999999999888877654322233344779999995  44444444333

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=1.6e-13  Score=130.58  Aligned_cols=232  Identities=9%  Similarity=0.065  Sum_probs=154.5

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe-CCCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD-AYKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~-~~~gl~~id  160 (393)
                      ..|++++++.  +.+|+++. ++.|..+|.++++   ....+ .....|.+++++++|      ++|+++ ....|.++|
T Consensus        44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~---~~~~i-~~~~~p~~i~~~~~g------~lyv~~~~~~~v~~iD  111 (328)
T 3dsm_A           44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFK---EVGRI-TGFTSPRYIHFLSDE------KAYVTQIWDYRIFIIN  111 (328)
T ss_dssp             SCEEEEEEET--TEEEEEEGGGTEEEEEETTTCC---EEEEE-ECCSSEEEEEEEETT------EEEEEEBSCSEEEEEE
T ss_pred             ccceEEEEEC--CEEEEEEcCCCEEEEEECcccE---EEEEc-CCCCCCcEEEEeCCC------eEEEEECCCCeEEEEE
Confidence            3578888863  36888876 6789999998765   12444 335789999998899      999998 556799999


Q ss_pred             CCc--e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          161 GNS--T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       161 ~~g--~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      +++  . ..+...........+.++++ .++.+|+++.+                ..+.|.++|+++++..........|
T Consensus       112 ~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p  174 (328)
T 3dsm_A          112 PKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQP  174 (328)
T ss_dssp             TTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCB
T ss_pred             CCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCc
Confidence            876  2 12211110111235778888 57799999621                2458999999988765544444578


Q ss_pred             CcEEEcCCCCEEEEEeCCC----------CeEEEEEecCCCCcceeeeeccCC--CCCCeEEECCCCC-EEEEEecCcch
Q 016199          238 NGVVLSPDQTHLVYCETSM----------RRCRKFYIKGKNAGRVEKFIETLP--GLPDNIRYDGEGH-YLIALATEFST  304 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~----------~ri~~~~~~g~~~~~~~~~~~~l~--g~P~~i~~d~~G~-lwva~~~~r~~  304 (393)
                      +++++++||+ +|++....          ++|++++.++.   +..... ..+  ..|.+++++++|+ +|++..     
T Consensus       175 ~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~-~~~~g~~p~~la~~~d~~~lyv~~~-----  244 (328)
T 3dsm_A          175 TSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQF-KFKLGDWPSEVQLNGTRDTLYWINN-----  244 (328)
T ss_dssp             CCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEE-ECCTTCCCEEEEECTTSCEEEEESS-----
T ss_pred             cceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCC---eEEEEE-ecCCCCCceeEEEecCCCEEEEEcc-----
Confidence            9999999995 78887765          78999997532   222222 122  3699999999876 666432     


Q ss_pred             hhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEE--eeCCCCCccEEE-EE-eCCEEEEEe----cCC
Q 016199          305 YWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAH--YYDPEMSLISSA-IK-IGDHLYCGS----VHH  376 (393)
Q Consensus       305 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~--~~d~~~~~~~~~-~~-~~g~Lyigs----~~~  376 (393)
                                                      .|+++|.+...+..  +..........+ .. ++++||++.    ..+
T Consensus       245 --------------------------------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~  292 (328)
T 3dsm_A          245 --------------------------------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ  292 (328)
T ss_dssp             --------------------------------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSE
T ss_pred             --------------------------------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccC
Confidence                                            27888875433211  111101223333 33 478999998    677


Q ss_pred             CeEEEEeCC
Q 016199          377 RGILHLDVN  385 (393)
Q Consensus       377 ~~i~~~~~~  385 (393)
                      +.|.+++.+
T Consensus       293 ~~V~v~d~~  301 (328)
T 3dsm_A          293 GIVYRYSPQ  301 (328)
T ss_dssp             EEEEEECTT
T ss_pred             CEEEEECCC
Confidence            899999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.60  E-value=8.4e-13  Score=125.43  Aligned_cols=245  Identities=14%  Similarity=0.164  Sum_probs=151.0

Q ss_pred             cCCCceEEEecCCCEEEEEec---CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE---DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~---~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~  157 (393)
                      ...|.+++++++|+ ||+.+.   ++.|+.|+.+++.. ..+..+......|.+++++++|     +.||+++...+ +.
T Consensus        39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg-----~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEAR-----QLVYSANYHKGTAE  111 (347)
T ss_dssp             CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTT-----TEEEEEETTTTEEE
T ss_pred             cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCC-----CEEEEEeCCCCEEE
Confidence            37899999999998 887775   47899999865540 0122222235689999999999     25888875444 55


Q ss_pred             EEe--CCc-eEEEee-ccCCc------cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-CCe
Q 016199          158 KIS--GNS-TVLLTD-EAEGQ------KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-TKE  226 (393)
Q Consensus       158 ~id--~~g-~~~l~~-~~~g~------~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-t~~  226 (393)
                      .++  .+| .+.+.. ...+.      ....++.+++++||++|+++                 ...+.|..|+.. +++
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~-----------------~~~~~v~~~~~~~~g~  174 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID-----------------LGSDKVYVYNVSDAGQ  174 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE-----------------TTTTEEEEEEECTTSC
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe-----------------CCCCEEEEEEECCCCc
Confidence            555  444 333321 11111      12346789999999988886                 234567777765 455


Q ss_pred             EEEEe----cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee--eccCC------CCCCeEEECCCCC-
Q 016199          227 TKVLV----SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF--IETLP------GLPDNIRYDGEGH-  293 (393)
Q Consensus       227 ~~~~~----~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~--~~~l~------g~P~~i~~d~~G~-  293 (393)
                      +....    .....|++++++|||+.+|+++...+++..|+++.. .+..+..  ....+      ..|.+++++++|+ 
T Consensus       175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred             EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence            54332    122357889999999999999988999999988642 1222211  11222      2366799999998 


Q ss_pred             EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceE--EEECCCCc--EEEEeeCCCCCccEEEE-EeCCE
Q 016199          294 YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGV--FIVDLDGK--PIAHYYDPEMSLISSAI-KIGDH  368 (393)
Q Consensus       294 lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v--~~~d~~g~--~~~~~~d~~~~~~~~~~-~~~g~  368 (393)
                      +|++....                                  +.|  +.++.+|+  .+..+............ +++.+
T Consensus       254 l~v~~~~~----------------------------------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          254 LYVSNRGY----------------------------------NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF  299 (347)
T ss_dssp             EEEEEETT----------------------------------TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred             EEEEeCCC----------------------------------CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE
Confidence            56665432                                  234  44444453  33334332211122223 34567


Q ss_pred             EEEEecCCCeEEEEeCC
Q 016199          369 LYCGSVHHRGILHLDVN  385 (393)
Q Consensus       369 Lyigs~~~~~i~~~~~~  385 (393)
                      ||+++..++.|..++++
T Consensus       300 l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          300 VVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEe
Confidence            99998877888877543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.59  E-value=1.1e-14  Score=152.57  Aligned_cols=189  Identities=15%  Similarity=0.145  Sum_probs=131.9

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECC-CCCCCCceEEEEEeCC-CceE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFAN-SDPDADRITMIVADAY-KGLL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~  157 (393)
                      +..|++|+++++++.||+... .++|+++++++.........+.. ....|.+|++|. .|      +||+++.. +.|.
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g------~LY~tD~~~~~I~  478 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVS  478 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS------BCEECCTTTSCEE
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC------cEEEEeccCCeEE
Confidence            578999999987777888765 67899999886110000222221 234699999994 66      89999874 4688


Q ss_pred             EEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cC
Q 016199          158 KISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SD  233 (393)
Q Consensus       158 ~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~  233 (393)
                      +++++|  .+.+..    ..+..+++|++|+ .|.||++|.+                ..++|+++++++...+.+. ..
T Consensus       479 v~d~dg~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~  538 (699)
T 1n7d_A          479 VADTKGVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTEN  538 (699)
T ss_dssp             EEBSSSCCEEEECC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSS
T ss_pred             EEecCCCceEEEEe----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCC
Confidence            999888  333321    1234588999998 4699999732                1257999988765544443 46


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEec
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      +..|+||+++++++.|||+++..++|.+++++|..   .+.++..  .-..|.+|++|.+ ++|++.+.
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~~~P~glavd~~-~lywtd~~  603 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFWTDII  603 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC---CEEECCCSSSCSSCCCCEEETT-EEEEECST
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc---eEEEEecCCcCCCceEeEEECC-EEEEEeCC
Confidence            88999999999988999999999999999997632   3334321  2247999999976 56655553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.59  E-value=4e-13  Score=141.96  Aligned_cols=230  Identities=13%  Similarity=0.129  Sum_probs=149.1

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-------CCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-------TGGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-------~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      ..+++.|.+|+ ||+|+ +++|.+++++++.    +..+..       .......|..|.+|      +||||+..+||+
T Consensus       375 v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~i~~d~~g------~lWigT~~~Gl~  442 (758)
T 3ott_A          375 IRHIYEDKEQQ-LWIAT-DGSINRYDYATRQ----FIHYNIVDNTGTYNTNWTYYIFEDTAG------QLWISTCLGGIF  442 (758)
T ss_dssp             EEEEEECTTSC-EEEEE-TTEEEEEETTTTE----EEEEEEECCC--CBSSSEEEEEECTTS------EEEEEESSSCEE
T ss_pred             eEEEEECCCCC-EEEEe-CCcHhhcCcCCCc----EEEeecCCCcCCCCCceEEEEEEcCCC------CEEEEECCCceE
Confidence            35688888886 99999 5689999988765    555531       11235688999999      999998778999


Q ss_pred             EEeCCc-e----EEEe-----eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          158 KISGNS-T----VLLT-----DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       158 ~id~~g-~----~~l~-----~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      +++++. .    ..+.     ....+.+...+.+|..|++|+||++..                + .++|++||+++++.
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~----------------t-~~Gl~~~d~~~~~~  505 (758)
T 3ott_A          443 VVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLY----------------N-NKGIDKINPRTREV  505 (758)
T ss_dssp             EEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEET----------------T-CSSEEEEETTTTEE
T ss_pred             EEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEcc----------------C-CCCcEEEeCCCCce
Confidence            998652 0    1111     112233333467899999999999210                2 24699999998888


Q ss_pred             EEEecC-c---cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCC-CCCeEEECCCCCEEEEEecC
Q 016199          228 KVLVSD-L---YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLPG-LPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       228 ~~~~~~-l---~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~g-~P~~i~~d~~G~lwva~~~~  301 (393)
                      +.+... +   ..++.+..+.+| .+|++..  ++|.+|+.+..+   .+.+. +.++. ...++..+ +|++|+++.  
T Consensus       506 ~~~~~~~~~~~~~~~~i~~d~~g-~lWigt~--~Gl~~~~~~~~~---~~~~~~~gl~~~~i~~i~~~-~g~lWi~t~--  576 (758)
T 3ott_A          506 TKLFADELTGEKSPNYLLCDEDG-LLWVGFH--GGVMRINPKDES---QQSISFGSFSNNEILSMTCV-KNSIWVSTT--  576 (758)
T ss_dssp             EEECTTTSCGGGCEEEEEECTTS-CEEEEET--TEEEEECC--CC---CCBCCCCC---CCEEEEEEE-TTEEEEEES--
T ss_pred             EEecCCCcCCCcccceEEECCCC-CEEEEec--CceEEEecCCCc---eEEecccCCCccceEEEEEC-CCCEEEECC--
Confidence            776422 1   235667777777 5887753  689999975433   22221 12221 12345555 899999997  


Q ss_pred             cchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEE-eCCEEEEEecCCCeEE
Q 016199          302 FSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIK-IGDHLYCGSVHHRGIL  380 (393)
Q Consensus       302 r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~-~~g~Lyigs~~~~~i~  380 (393)
                                                        .||.++|++...+..+..+.......... .+|.||+|  +.+++.
T Consensus       577 ----------------------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~fG--~~~Gl~  620 (758)
T 3ott_A          577 ----------------------------------NGLWIIDRKTMDARQQNMTNKRFTSLLFDPKEDCVYLG--GADGFG  620 (758)
T ss_dssp             ----------------------------------SCEEEEETTTCCEEEC--CCCCCSEEEEETTTTEEEEE--CBSEEE
T ss_pred             ----------------------------------CCeEEEcCCCceeEEecCCCCceeeeEEECCCCcEEEe--cCCceE
Confidence                                              56999999877777765444222233333 47999999  567899


Q ss_pred             EEeCCCCC
Q 016199          381 HLDVNQHP  388 (393)
Q Consensus       381 ~~~~~~~~  388 (393)
                      ++++++..
T Consensus       621 ~f~p~~~~  628 (758)
T 3ott_A          621 ISHSNLEA  628 (758)
T ss_dssp             EEEC---C
T ss_pred             EEChhhcc
Confidence            99876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.59  E-value=2.5e-13  Score=143.47  Aligned_cols=191  Identities=16%  Similarity=0.129  Sum_probs=133.7

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCC-ceEE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYK-GLLK  158 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~  158 (393)
                      +..|.+|+++..++.||+... .++|+++++++.........+.. ....|.||++|..+     ++||+++... .|.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~-----~~LY~tD~~~~~I~v  497 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSV  497 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC-----CcEEEEecCCCeEEE
Confidence            578999999986666777665 67899999876321000223322 34679999999754     2899999854 4888


Q ss_pred             EeCCc--eEEEeeccCCccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCc
Q 016199          159 ISGNS--TVLLTDEAEGQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDL  234 (393)
Q Consensus       159 id~~g--~~~l~~~~~g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l  234 (393)
                      ++.+|  .+.+...    .+..|.+|++|+. |.||++|.+.                .++|.++++++...+.+. .++
T Consensus       498 ~~ldG~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g~----------------~~~I~~~~~dG~~~~~lv~~~l  557 (791)
T 3m0c_C          498 ADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENI  557 (791)
T ss_dssp             EETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSC
T ss_pred             EeCCCCeEEEEEeC----CCCCcceEEEecCCCCEEEecCCC----------------CCeEEEEecCCCceEEEEeCCC
Confidence            89988  3444321    2345889999985 7999998321                258999999876665554 467


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC--CCCCCeEEECCCCCEEEEEecC
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL--PGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l--~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ..|+||+++++++.|||++...++|.+++++|..   ...++...  -..|.+|+++. +++|++.+..
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~---~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~  622 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  622 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred             CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc---eEEEecCCCccCCCCEEEEeC-CEEEEEECCC
Confidence            8999999998888999999999999999998753   23333221  12577888864 4788877643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.59  E-value=3.5e-13  Score=139.34  Aligned_cols=189  Identities=13%  Similarity=0.100  Sum_probs=139.4

Q ss_pred             ccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-------CCCceeeeEECCCCCCCCceEEEEEeC
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-------TGGRPLGIAFANSDPDADRITMIVADA  152 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-------~~~~p~gl~~d~~G~~~~~~~L~v~~~  152 (393)
                      .+..+.++++|+.++.||+++. .++|++++.++..    .+.+..       ....|.||++|..+     ++||+++.
T Consensus       338 ~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~----~~~v~~~~~~~~~~~~~p~glAvD~~~-----~nLY~td~  408 (628)
T 4a0p_A          338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ----GFTVVVSSVPSQNLEIQPYDLSIDIYS-----RYIYWTCE  408 (628)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEEC--------CCCEEEEEEETTT-----TEEEEEET
T ss_pred             hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC----ceEEEEcccccccccCCcceEEeeccC-----CeEEEEcC
Confidence            3567888999997777887765 7799999988654    333221       13479999999864     18999998


Q ss_pred             CCc-eEEEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          153 YKG-LLKISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       153 ~~g-l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      ..+ |..++.+|  ...+...    .+..|.+|++|| +|.||++|.+.               ...+|++.++++...+
T Consensus       409 ~~~~I~v~~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g~---------------~~~~I~r~~~dG~~~~  469 (628)
T 4a0p_A          409 ATNVINVTRLDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQE---------------RSPKIERAALDGTERE  469 (628)
T ss_dssp             TTTEEEEEETTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEET---------------TEEEEEEEETTSCSCE
T ss_pred             CCCEEEEEECCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecCC---------------CCCeEEEEeCCCCCcE
Confidence            654 66778888  3344321    234588999999 79999998432               1137999999876666


Q ss_pred             EEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          229 VLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       229 ~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      .+.. ++..|+|++++++++.|||+++..++|.+++++|..   .+++.......|.+|+++. |++|++.+..
T Consensus       470 ~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~---r~~~~~~~~~~P~glav~~-~~ly~tD~~~  539 (628)
T 4a0p_A          470 VLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVLEDSNILQPVGLTVFE-NWLYWIDKQQ  539 (628)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCEEEEEEET-TEEEEEETTT
T ss_pred             EEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc---eEEEEcCCCCCcEEEEEEC-CEEEEEECCC
Confidence            5544 688999999999988999999999999999998753   3444433334799999986 7888887644

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.58  E-value=2.9e-12  Score=121.17  Aligned_cols=225  Identities=12%  Similarity=0.178  Sum_probs=150.4

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CC--------ceeeeEECCCCCCCCceEEEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GG--------RPLGIAFANSDPDADRITMIVADA  152 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~--------~p~gl~~d~~G~~~~~~~L~v~~~  152 (393)
                      ..|.+++++++|+.+|++.. ++.|..++.++++   ....+... ..        .|.+++++++|     +.+|+++.
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~l~~~~~  160 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE---VKGRLVLDDRKRTEEVRPLQPRELVADDAT-----NTVYISGI  160 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC---EEEEEESCCCCCCSSCCCCEEEEEEEETTT-----TEEEEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe---eEEEEecCCCccccccCCCCCceEEECCCC-----CEEEEEec
Confidence            45899999999998888766 6899999988765   12222211 11        27889999988     26888873


Q ss_pred             --CCceEEEeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          153 --YKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       153 --~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                        ...|+.+|.++.+.... ... ....+++++++++|+ +|+++                  ..+.++.+|..+++...
T Consensus       161 ~~~~~i~~~d~~~~~~~~~-~~~-~~~~~~~~~~s~dg~~l~~~~------------------~~~~i~~~d~~~~~~~~  220 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTA-IQN-TGKMSTGLALDSEGKRLYTTN------------------ADGELITIDTADNKILS  220 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEE-ECC-CCTTCCCCEEETTTTEEEEEC------------------TTSEEEEEETTTTEEEE
T ss_pred             CCCceEEEEcCCCCceEEE-ecC-CCCccceEEECCCCCEEEEEc------------------CCCeEEEEECCCCeEEE
Confidence              34488999865111111 110 012367899999985 77774                  35689999998887654


Q ss_pred             Eec-----CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcc
Q 016199          230 LVS-----DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFS  303 (393)
Q Consensus       230 ~~~-----~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~  303 (393)
                      ...     ....++++++++||+.+|+++...+.|..|+++..   +..... .. +.|.+++++++|+ +|++....  
T Consensus       221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~-~~-~~~~~~~~s~dg~~l~v~~~~~--  293 (353)
T 3vgz_A          221 RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKV-AA-PESLAVLFNPARNEAYVTHRQA--  293 (353)
T ss_dssp             EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEE-EC-SSCCCEEEETTTTEEEEEETTT--
T ss_pred             EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEE-Ec-CCCceEEECCCCCEEEEEECCC--
Confidence            322     13356789999999999999988899999998532   222122 12 2367899999998 77776533  


Q ss_pred             hhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEE-EeCCEEEEEecC
Q 016199          304 TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAI-KIGDHLYCGSVH  375 (393)
Q Consensus       304 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~-~~~g~Lyigs~~  375 (393)
                                                      +.|..+|. +++++..+..+... ..... +++.+||++...
T Consensus       294 --------------------------------~~v~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          294 --------------------------------GKVSVIDAKSYKVVKTFDTPTHP-NSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             --------------------------------TEEEEEETTTTEEEEEEECCSEE-EEEEECTTSCEEEEEEEC
T ss_pred             --------------------------------CeEEEEECCCCeEEEEEecCCCC-CeEEEcCCCCEEEEEEcc
Confidence                                            46888887 47777777654421 12223 344579998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=4e-13  Score=125.06  Aligned_cols=177  Identities=8%  Similarity=0.107  Sum_probs=124.8

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-----CCCceeeeEECCCCCCCCceEEEEEeC---
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-----TGGRPLGIAFANSDPDADRITMIVADA---  152 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-----~~~~p~gl~~d~~G~~~~~~~L~v~~~---  152 (393)
                      ...|.+++++++|+ ||+++. +++|++++++++.    .+.+..     ....|.+++++++|      ++|+++.   
T Consensus        68 ~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~i~~d~~G------~l~vtd~~~g  136 (296)
T 3e5z_A           68 SHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGE----WESIADSFEGKKLNSPNDVCLAPDG------SLWFSDPTYG  136 (296)
T ss_dssp             CSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCC----EEEEECEETTEECCCCCCEEECTTS------CEEEEECSHH
T ss_pred             CCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCc----EEEEeeccCCCCCCCCCCEEECCCC------CEEEECCccc
Confidence            35688999999997 787776 5799999986655    444321     12457899999999      9999753   


Q ss_pred             ---------------CCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE
Q 016199          153 ---------------YKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR  216 (393)
Q Consensus       153 ---------------~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~  216 (393)
                                     ..+|+++++++ ...+..     ....++++++++||++++++                 ...++
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-----~~~~~~gi~~s~dg~~lv~~-----------------~~~~~  194 (296)
T 3e5z_A          137 IDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIR-----DRVKPNGLAFLPSGNLLVSD-----------------TGDNA  194 (296)
T ss_dssp             HHCGGGSSCCCCCSSSCEEEEECTTSCEEEEEC-----CCSSEEEEEECTTSCEEEEE-----------------TTTTE
T ss_pred             cccccccccccccCCCcEEEEECCCCCEEEeec-----CCCCCccEEECCCCCEEEEe-----------------CCCCe
Confidence                           24799999877 443321     13457899999999877876                 34568


Q ss_pred             EEEEeCC-CCeE----EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEE-CC
Q 016199          217 LLSFDPV-TKET----KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRY-DG  290 (393)
Q Consensus       217 l~~~d~~-t~~~----~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~-d~  290 (393)
                      |++|+.. ++++    ..+......|+++++++||+ +|++.  .++|.+|+.+|+.   ...+. ...+ |.++++ ++
T Consensus       195 i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~~---~~~~~-~~~~-~~~~~f~~~  266 (296)
T 3e5z_A          195 THRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGDE---LGRVL-TPQT-TSNLCFGGP  266 (296)
T ss_dssp             EEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSCE---EEEEE-CSSC-CCEEEEEST
T ss_pred             EEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCCE---EEEEE-CCCC-ceeEEEECC
Confidence            9999875 4544    22312345689999999994 88888  7899999976432   22232 2223 888998 46


Q ss_pred             CCC-EEEEEe
Q 016199          291 EGH-YLIALA  299 (393)
Q Consensus       291 ~G~-lwva~~  299 (393)
                      +|+ +|+++.
T Consensus       267 d~~~L~v~t~  276 (296)
T 3e5z_A          267 EGRTLYMTVS  276 (296)
T ss_dssp             TSCEEEEEET
T ss_pred             CCCEEEEEcC
Confidence            765 999876

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.57  E-value=1.1e-13  Score=131.06  Aligned_cols=180  Identities=13%  Similarity=0.124  Sum_probs=125.7

Q ss_pred             CCCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-----CCCceeeeEECC-CCCCCCceEEEEEeCC--
Q 016199           83 KGPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-----TGGRPLGIAFAN-SDPDADRITMIVADAY--  153 (393)
Q Consensus        83 ~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-----~~~~p~gl~~d~-~G~~~~~~~L~v~~~~--  153 (393)
                      ..|.++++++ +| .||+++..++|++++++++.    ++.+..     ....|.++++++ +|      +|||++..  
T Consensus        80 ~~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~p~~i~~d~~~G------~l~v~d~~~~  148 (322)
T 2fp8_A           80 GRTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGH----ATQLATSVDGVPFKWLYAVTVDQRTG------IVYFTDVSTL  148 (322)
T ss_dssp             CCEEEEEEETTTT-EEEEEETTTEEEEECTTCEE----CEEEESEETTEECSCEEEEEECTTTC------CEEEEESCSS
T ss_pred             CCCceEEEcCCCC-cEEEEECCCCEEEEeCCCCE----EEEecccCCCCcccccceEEEecCCC------EEEEECCccc
Confidence            4689999997 66 59999887789999887654    333321     124689999999 99      99999864  


Q ss_pred             ----------------CceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCC
Q 016199          154 ----------------KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPN  214 (393)
Q Consensus       154 ----------------~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~  214 (393)
                                      ++|+++++++  .+.+..     .+..+++|+++++|+ ||+++                 ...
T Consensus       149 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyv~d-----------------~~~  206 (322)
T 2fp8_A          149 YDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSADSSFVLVAE-----------------FLS  206 (322)
T ss_dssp             CCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTTSSEEEEEE-----------------GGG
T ss_pred             ccccccceehcccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCCCCEEEEEe-----------------CCC
Confidence                            3589999864  333321     245689999999985 99997                 334


Q ss_pred             cEEEEEeCCC---CeEEEEecCccCCCcEEEcCCCCEEEEEeCC----------CCeEEEEEecCCCCcceeeeecc--C
Q 016199          215 GRLLSFDPVT---KETKVLVSDLYFANGVVLSPDQTHLVYCETS----------MRRCRKFYIKGKNAGRVEKFIET--L  279 (393)
Q Consensus       215 g~l~~~d~~t---~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~----------~~ri~~~~~~g~~~~~~~~~~~~--l  279 (393)
                      ++|++|+.++   +..+.+.. +..|+|++++++|+ +|+++..          .++|++|+.+|+.   .+.+...  .
T Consensus       207 ~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~---~~~~~~~~g~  281 (322)
T 2fp8_A          207 HQIVKYWLEGPKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNI---LEVIPLPPPF  281 (322)
T ss_dssp             TEEEEEESSSTTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCE---EEEEECCTTT
T ss_pred             CeEEEEECCCCcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCE---EEEEECCCCC
Confidence            6899999875   33444433 22299999999995 8998865          5789999876532   2223211  1


Q ss_pred             -CCCCCeEEECCCCCEEEEEecC
Q 016199          280 -PGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       280 -~g~P~~i~~d~~G~lwva~~~~  301 (393)
                       ...|.+++. .+|++||+....
T Consensus       282 ~~~~~~~~~~-~~g~L~v~~~~~  303 (322)
T 2fp8_A          282 AGEHFEQIQE-HDGLLYIGTLFH  303 (322)
T ss_dssp             TTSCCCEEEE-ETTEEEEECSSC
T ss_pred             ccccceEEEE-eCCEEEEeecCC
Confidence             124667776 478999987643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.57  E-value=2.4e-12  Score=121.08  Aligned_cols=240  Identities=11%  Similarity=0.076  Sum_probs=153.1

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCccee-eeeecCCCceee-eEECCCCCCCCceEEEEEeCCC----
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLV-HNWINTGGRPLG-IAFANSDPDADRITMIVADAYK----  154 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~-~~~~~~~~~p~g-l~~d~~G~~~~~~~L~v~~~~~----  154 (393)
                      ...| +++++++|+.+|++.. ++.|+.++.+++.    . .........|.. ++++++|     +.++ +....    
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~s~dg-----~~l~-~~~~~~~~~  108 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP----PKVVAIQEGQSSMADVDITPDD-----QFAV-TVTGLNHPF  108 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS----CEEEEEEECSSCCCCEEECTTS-----SEEE-ECCCSSSSC
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc----eeEEecccCCCCccceEECCCC-----CEEE-EecCCCCcc
Confidence            3556 8999999998888876 7899999998765    3 333334567877 9999999     2456 43444    


Q ss_pred             ceEEEeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCC-cEEEEEeCCCCeE----E
Q 016199          155 GLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPN-GRLLSFDPVTKET----K  228 (393)
Q Consensus       155 gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~-g~l~~~d~~t~~~----~  228 (393)
                      .|..+|.+..+.+.....+   ..++++++++||+ +|+++..               ... -.+|.++.. +..    .
T Consensus       109 ~i~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~---------------~~~~i~~~~~~~~-g~~~~~~~  169 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIP---YDAVGIAISPNGNGLILIDRS---------------SANTVRRFKIDAD-GVLFDTGQ  169 (331)
T ss_dssp             EEEEEETTTTEEEEEEECC---TTEEEEEECTTSSCEEEEEET---------------TTTEEEEEEECTT-CCEEEEEE
T ss_pred             cEEEEECCCCCeEEEEECC---CCccceEECCCCCEEEEEecC---------------CCceEEEEEECCC-CcEeecCC
Confidence            5888887651111111111   2357899999994 8888622               112 234455433 222    1


Q ss_pred             EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhh
Q 016199          229 VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA-GRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYW  306 (393)
Q Consensus       229 ~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~-~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~  306 (393)
                      ........|.++++++||+.+|++....+.|..|+++..+. .....+.  ....|.+++++++|+ +|++....     
T Consensus       170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~-----  242 (331)
T 3u4y_A          170 EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTEST-----  242 (331)
T ss_dssp             EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSE-----
T ss_pred             ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCC-----
Confidence            12233456899999999999999999899999999864322 1122222  235688999999999 56654422     


Q ss_pred             hhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcE--EEEeeCC-----CCCcc---EEEEEeCCEEEEEecC
Q 016199          307 DLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKP--IAHYYDP-----EMSLI---SSAIKIGDHLYCGSVH  375 (393)
Q Consensus       307 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~--~~~~~d~-----~~~~~---~~~~~~~g~Lyigs~~  375 (393)
                                                   +.|..+|.+ |++  +..+...     .....   ....+++.+||+++..
T Consensus       243 -----------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          243 -----------------------------VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             -----------------------------EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             -----------------------------CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence                                         457888875 444  3333222     11111   1334456789999988


Q ss_pred             CCeEEEEeCCCC
Q 016199          376 HRGILHLDVNQH  387 (393)
Q Consensus       376 ~~~i~~~~~~~~  387 (393)
                      .+.|..+++.+.
T Consensus       294 ~~~v~v~d~~~~  305 (331)
T 3u4y_A          294 SRELKVFTISGK  305 (331)
T ss_dssp             TTEEEEEETTSC
T ss_pred             CCcEEEEEecCC
Confidence            889999998654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.55  E-value=3.8e-13  Score=125.56  Aligned_cols=179  Identities=12%  Similarity=0.146  Sum_probs=127.3

Q ss_pred             CCCceEEEecC-CCEEEEEecCCeEEEEEcCCCCCcceeeee-ec-----CCCceeeeEECCCCCCCCceEEEEEeCC--
Q 016199           83 KGPEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHNW-IN-----TGGRPLGIAFANSDPDADRITMIVADAY--  153 (393)
Q Consensus        83 ~~Pe~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~-~~-----~~~~p~gl~~d~~G~~~~~~~L~v~~~~--  153 (393)
                      ..|.+++++++ | .||+++..++|++++.+ ++    ...+ ..     ....|.+++++++|      ++|+++..  
T Consensus        71 ~~~~~i~~~~~~g-~l~v~~~~~~l~~~d~~-g~----~~~~~~~~~~~~~~~~~~~i~~d~~g------~l~v~~~~~~  138 (314)
T 1pjx_A           71 GIPAGCQCDRDAN-QLFVADMRLGLLVVQTD-GT----FEEIAKKDSEGRRMQGCNDCAFDYEG------NLWITAPAGE  138 (314)
T ss_dssp             CCEEEEEECSSSS-EEEEEETTTEEEEEETT-SC----EEECCSBCTTSCBCBCCCEEEECTTS------CEEEEECBCB
T ss_pred             CCCceEEEecCCC-cEEEEECCCCEEEEeCC-CC----EEEEEeccCCCccccCCcCEEECCCC------CEEEEecCcc
Confidence            56889999999 6 59998877789999988 54    4433 21     12358899999999      99999864  


Q ss_pred             --------------CceEEEeCCc-eEEEeeccCCccccccccEEEc----CCC-cEEEEeCCCccchhhheehhcccCC
Q 016199          154 --------------KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVA----DDG-MIYFTDASNKYYLREYILDIFEGKP  213 (393)
Q Consensus       154 --------------~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d----~dG-~l~~td~~~~~~~~~~~~~~~e~~~  213 (393)
                                    .+|+++++++ ...+..     ....+++++++    ++| .+|+++                 ..
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-----~~~~~~~i~~~~~~d~dg~~l~v~~-----------------~~  196 (314)
T 1pjx_A          139 VAPADYTRSMQEKFGSIYCFTTDGQMIQVDT-----AFQFPNGIAVRHMNDGRPYQLIVAE-----------------TP  196 (314)
T ss_dssp             CTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-----EESSEEEEEEEECTTSCEEEEEEEE-----------------TT
T ss_pred             cccccccccccCCCCeEEEECCCCCEEEecc-----CCCCcceEEEecccCCCCCEEEEEE-----------------CC
Confidence                          4699999877 433321     12346788998    998 699997                 33


Q ss_pred             CcEEEEEeCC-CCeEE---EEe--c-Cc-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEec-CCCCcceeeeeccCCCCCC
Q 016199          214 NGRLLSFDPV-TKETK---VLV--S-DL-YFANGVVLSPDQTHLVYCETSMRRCRKFYIK-GKNAGRVEKFIETLPGLPD  284 (393)
Q Consensus       214 ~g~l~~~d~~-t~~~~---~~~--~-~l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~-g~~~~~~~~~~~~l~g~P~  284 (393)
                      .++|++||.+ +++..   .+.  . .. ..|++++++++| .+|+++...++|.+|+.+ +..   ...+. .....|.
T Consensus       197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~---~~~~~-~~~~~~~  271 (314)
T 1pjx_A          197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQP---KMRIR-CPFEKPS  271 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSC---SEEEE-CSSSCEE
T ss_pred             CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcE---eEEEe-CCCCCce
Confidence            5689999865 34432   111  1 11 568999999999 689998778899999976 321   12221 1124688


Q ss_pred             eEEECCCCC-EEEEEec
Q 016199          285 NIRYDGEGH-YLIALAT  300 (393)
Q Consensus       285 ~i~~d~~G~-lwva~~~  300 (393)
                      +++++++|+ +|++...
T Consensus       272 ~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          272 NLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEEECTTSSEEEEEETT
T ss_pred             eEEECCCCCEEEEEeCC
Confidence            999999999 9998764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.54  E-value=1.4e-13  Score=144.25  Aligned_cols=223  Identities=13%  Similarity=0.160  Sum_probs=152.6

Q ss_pred             EEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCC-CceEEEeCCc-e--EEEeecc
Q 016199           97 IYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAY-KGLLKISGNS-T--VLLTDEA  171 (393)
Q Consensus        97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~~id~~g-~--~~l~~~~  171 (393)
                      |++.. .+.|.+++.++..    ...+......|.+|++++ ++      +||+++.. ..|++++.++ .  .... ..
T Consensus       380 ll~~~-~~~I~~id~~~~~----~~~~~~~~~~p~gla~d~~~~------~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~~  447 (699)
T 1n7d_A          380 LFFTN-RHEVRKMTLDRSE----YTSLIPNLRNVVALDTEVASN------RIYWSDLSQRMICSTQLDRAHGVSSYD-TV  447 (699)
T ss_dssp             BCCCC-TTC-CEECTTSCC----EECCSCCCTTCCCCEEETTTT------EEEECCTTTTSBEEEESCCCCC-CCCC-CB
T ss_pred             EEecC-ccceEEEeCCCCc----ceeeeccCcceEEEccccccC------eEEEEecCCCeEEEEecCCCCCCcceE-EE
Confidence            44433 3468888877655    444444456899999997 56      89999875 4588888765 1  0000 11


Q ss_pred             CCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCEE
Q 016199          172 EGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTHL  249 (393)
Q Consensus       172 ~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~l  249 (393)
                      ....+..+.+|++|. .|+||++|                 ...++|++++++++..+.+.. ++..|++|+++++++.|
T Consensus       448 i~~~~~~P~glavD~~~g~LY~tD-----------------~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~l  510 (699)
T 1n7d_A          448 ISRDIQAPDGLAVDWIHSNIYWTD-----------------SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFM  510 (699)
T ss_dssp             CCSCC--CCCEECCCSSSBCEECC-----------------TTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCC
T ss_pred             EeCCCCCcceEEEEeeCCcEEEEe-----------------ccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcE
Confidence            111234578999995 67999997                 335679999998776666544 57889999999988899


Q ss_pred             EEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhC
Q 016199          250 VYCETSM-RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLG  327 (393)
Q Consensus       250 ~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~  327 (393)
                      ||++... ++|.+++++|..   .+++....-..|++|++|++ +++|++....                          
T Consensus       511 y~td~~~~~~I~~~~~dG~~---~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~--------------------------  561 (699)
T 1n7d_A          511 YWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL--------------------------  561 (699)
T ss_dssp             EECCCSSSCCEEBCCSSSCC---CCEESCSSCSSCCCEEECTTTCCEEEEETTT--------------------------
T ss_pred             EEcccCCCCeEEEEeCCCCC---eeEEEeCCCCCccEEEEeccCCEEEEEecCC--------------------------
Confidence            9999765 899999987642   22233222347999999975 6799987643                          


Q ss_pred             CCCCCCCCceEEEECCCCcEEEEeeCC--CCCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199          328 MPPMGKSSSGVFIVDLDGKPIAHYYDP--EMSLISSAIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       328 ~~~~~~~~~~v~~~d~~g~~~~~~~d~--~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                              +.|.+++.+|...+.+...  .......+..++++||++......|.+++..
T Consensus       562 --------~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          562 --------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             --------TEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred             --------CeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence                    4689999988655555432  2222223344678999999889999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.53  E-value=8.8e-12  Score=119.97  Aligned_cols=240  Identities=17%  Similarity=0.203  Sum_probs=161.8

Q ss_pred             CCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id  160 (393)
                      ..|.+++++++|+.||++. .++.|..|+..+++    ..........+.+++++++|     +.|+++... +.|..+|
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~----~~~~~~~~~~v~~~~~spdg-----~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIATVPAGSSPQGVAVSPDG-----KQVYVTNMASSTLSVID  102 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSEEEEEECTTS-----SEEEEEETTTTEEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCe----EEEEEECCCCccceEECCCC-----CEEEEEECCCCEEEEEE
Confidence            4578999999999886554 68999999987665    33333334588999999998     257777654 5688888


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG  239 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng  239 (393)
                      .++.+.+.....+   ..+.+++++++|. +|++.                 ...+.|+.||..+++..........+..
T Consensus       103 ~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~-----------------~~~~~v~~~d~~~~~~~~~~~~~~~~~~  162 (391)
T 1l0q_A          103 TTSNTVAGTVKTG---KSPLGLALSPDGKKLYVTN-----------------NGDKTVSVINTVTKAVINTVSVGRSPKG  162 (391)
T ss_dssp             TTTTEEEEEEECS---SSEEEEEECTTSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred             CCCCeEEEEEeCC---CCcceEEECCCCCEEEEEe-----------------CCCCEEEEEECCCCcEEEEEecCCCcce
Confidence            7651111111111   2356899999995 76775                 3456899999988876655544456789


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      +++++|++.+|++....+.|..|++...   +..... .....+.+++++++|+ +|++.....                
T Consensus       163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~----------------  222 (391)
T 1l0q_A          163 IAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKY----------------  222 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE-ECSSEEEEEEECTTSSEEEEEEECSS----------------
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEE-ecCCCccceEECCCCCEEEEEecCcC----------------
Confidence            9999999999999988899999998543   222222 1234577899999998 555543110                


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEE-EeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAI-KIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~-~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                                      .+.|..+|.+ ++.+..+..... ...... +++.+||+++.....|..+|+....
T Consensus       223 ----------------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          223 ----------------FNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             ----------------CCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ----------------CCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence                            1457888864 666666654332 122222 3345798888778889888876543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.53  E-value=7.1e-13  Score=140.05  Aligned_cols=232  Identities=13%  Similarity=0.117  Sum_probs=147.5

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-------CCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-------TGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-------~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+++.|.+|+ ||+|+. +++++++..++... .+..+..       .......|..|.+|      +||||+ ..||++
T Consensus       327 ~~i~~D~~g~-lWiGt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g------~lWigt-~~GL~~  396 (758)
T 3ott_A          327 YSLFRDSKGF-YWFGGA-NGLIRFTDPAGERH-DAIWYRMGDKTYPLSHNRIRHIYEDKEQ------QLWIAT-DGSINR  396 (758)
T ss_dssp             EEEEECTTCC-EEEEET-TEEEEESCTTSSCC-CCEEECTTCSSSCCSCSCEEEEEECTTS------CEEEEE-TTEEEE
T ss_pred             EEEEEcCCCC-EEEeeC-Ccceeecccccccc-eeEEeccCCcCCCCCCCceEEEEECCCC------CEEEEe-CCcHhh
Confidence            4577888886 999995 57999986643200 0222221       11346789999999      999997 579999


Q ss_pred             EeCCc--eEEEee-ccCC-ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC------CeEE
Q 016199          159 ISGNS--TVLLTD-EAEG-QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT------KETK  228 (393)
Q Consensus       159 id~~g--~~~l~~-~~~g-~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t------~~~~  228 (393)
                      +++++  .+.+.. ...+ .+...+.++..|++|+||++.                  ..++|++||+++      +...
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT------------------~~~Gl~~~~~~~~~~~~~~~~~  458 (758)
T 3ott_A          397 YDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST------------------CLGGIFVVDKHKLMQSTSGQYI  458 (758)
T ss_dssp             EETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE------------------SSSCEEEEEHHHHHHCCSSEEE
T ss_pred             cCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE------------------CCCceEEEccccccccCCccee
Confidence            99865  333321 1111 122346688899999999994                  345799998753      1221


Q ss_pred             ---EEe--cCcc--CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCC--CCCCeEEECCCCCEEEEE
Q 016199          229 ---VLV--SDLY--FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLP--GLPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       229 ---~~~--~~l~--~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~--g~P~~i~~d~~G~lwva~  298 (393)
                         .+.  .++.  ....+..+.+| .+|+.....++|++|+.+.   ++.+.+. +.+.  ..+..+..|++|++|+++
T Consensus       459 ~~~~~~~~~~l~~~~i~~i~~d~~g-~lWi~~~t~~Gl~~~d~~~---~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt  534 (758)
T 3ott_A          459 AEQNYSVHNGLSGMFINQIIPDNEG-NVWVLLYNNKGIDKINPRT---REVTKLFADELTGEKSPNYLLCDEDGLLWVGF  534 (758)
T ss_dssp             CSEEECGGGTCSCSCEEEEEECTTS-CEEEEETTCSSEEEEETTT---TEEEEECTTTSCGGGCEEEEEECTTSCEEEEE
T ss_pred             cccccccccccccceeeeEEEcCCC-CEEEEccCCCCcEEEeCCC---CceEEecCCCcCCCcccceEEECCCCCEEEEe
Confidence               111  1222  24556777777 5887333357899999743   2333332 1121  235678899999999998


Q ss_pred             ecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecCC
Q 016199          299 ATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVHH  376 (393)
Q Consensus       299 ~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~~  376 (393)
                      .                                    +||.+++++.+.+..+....  ...+..+.+++|+||+++  .
T Consensus       535 ~------------------------------------~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~~g~lWi~t--~  576 (758)
T 3ott_A          535 H------------------------------------GGVMRINPKDESQQSISFGSFSNNEILSMTCVKNSIWVST--T  576 (758)
T ss_dssp             T------------------------------------TEEEEECC--CCCCBCCCCC---CCEEEEEEETTEEEEEE--S
T ss_pred             c------------------------------------CceEEEecCCCceEEecccCCCccceEEEEECCCCEEEEC--C
Confidence            6                                    57999999776665553211  234556667789999996  6


Q ss_pred             CeEEEEeCCCC
Q 016199          377 RGILHLDVNQH  387 (393)
Q Consensus       377 ~~i~~~~~~~~  387 (393)
                      .+|.+++.++.
T Consensus       577 ~Gl~~~~~~~~  587 (758)
T 3ott_A          577 NGLWIIDRKTM  587 (758)
T ss_dssp             SCEEEEETTTC
T ss_pred             CCeEEEcCCCc
Confidence            78999998654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.52  E-value=1.2e-12  Score=125.08  Aligned_cols=166  Identities=15%  Similarity=0.127  Sum_probs=106.5

Q ss_pred             CceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeee-------cCCCceeeeEECC----CCC
Q 016199           73 GSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWI-------NTGGRPLGIAFAN----SDP  140 (393)
Q Consensus        73 ~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~-------~~~~~p~gl~~d~----~G~  140 (393)
                      ..+.+.++ +..|.+|++.++|+ ||+... .|+|++++.+++.    .+.+.       ...+.+++|++++    +| 
T Consensus        23 ~~~~va~g-L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~----~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-   95 (347)
T 3das_A           23 VLRTVATG-LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGR----KTELGEVPGVSPSGEGGLLGIALSPDYASDH-   95 (347)
T ss_dssp             EEEEEECC-CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCC----EEEEEECTTCCCBTTBSEEEEEECTTHHHHC-
T ss_pred             eeEEeecC-CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCc----EeeecccCceeecCCCCceeeEeccccccCC-
Confidence            45666665 79999999999997 888888 8999999876543    32221       1235689999998    48 


Q ss_pred             CCCceEEEEEeC---CCceEEEeCCc----------eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheeh
Q 016199          141 DADRITMIVADA---YKGLLKISGNS----------TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILD  207 (393)
Q Consensus       141 ~~~~~~L~v~~~---~~gl~~id~~g----------~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~  207 (393)
                           .||++.+   ...|.++..++          .+.+..........+...|++++||.|||+........  ...+
T Consensus        96 -----~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~--~~qd  168 (347)
T 3das_A           96 -----MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTG--LSQD  168 (347)
T ss_dssp             -----EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGG--GTTC
T ss_pred             -----EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCc--cccC
Confidence                 8999743   34688875322          23332222222234567899999999999953211100  0000


Q ss_pred             hcccCCCcEEEEEeCCCC--------eEEEEecCccCCCcEEEcCCCCEEEEEeCC
Q 016199          208 IFEGKPNGRLLSFDPVTK--------ETKVLVSDLYFANGVVLSPDQTHLVYCETS  255 (393)
Q Consensus       208 ~~e~~~~g~l~~~d~~t~--------~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~  255 (393)
                        .....|.|+|+++++.        ..+.+..++..|.|++++++| .||++|..
T Consensus       169 --~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G-~L~~~d~g  221 (347)
T 3das_A          169 --RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQ-RLFASEFG  221 (347)
T ss_dssp             --TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTC-CEEEEECC
T ss_pred             --CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCC-CEEEEecC
Confidence              0123577888888754        334566677777888887765 47777643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.51  E-value=1.8e-12  Score=121.89  Aligned_cols=219  Identities=13%  Similarity=0.148  Sum_probs=138.3

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEE
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVL  166 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~  166 (393)
                      +++++++| .||+++.+  |++++.++..    ...+..........++. +|      ++|++...++|+.++++|...
T Consensus        64 ~~~~~~~g-~l~v~t~~--l~~~d~~g~~----~~~~~~~~~~~~~~~~~-~~------~l~v~t~~~~l~~~d~~g~~~  129 (330)
T 3hxj_A           64 RPSIGKDG-TIYFGSDK--VYAINPDGTE----KWRFDTKKAIVSDFTIF-ED------ILYVTSMDGHLYAINTDGTEK  129 (330)
T ss_dssp             CCEETTTT-EECCSSCE--EEEECCCGGG----GGGSCC-----CCEEEE-TT------EEEEECTTSEEEEECTTSCEE
T ss_pred             ceEEecCC-cEEEecCc--EEEECCCCcE----EEEEECCCCcccCceEE-CC------EEEEEecCCEEEEEcCCCCEE
Confidence            46677777 49998766  9999864332    22221111111223333 78      999998778899999887222


Q ss_pred             EeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCC
Q 016199          167 LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQ  246 (393)
Q Consensus       167 l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg  246 (393)
                      .......   .....+.++++|++|++.                  ..++|++||+++...............+.++++|
T Consensus       130 ~~~~~~~---~~~~~~~~~~~g~l~vgt------------------~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g  188 (330)
T 3hxj_A          130 WRFKTKK---AIYATPIVSEDGTIYVGS------------------NDNYLYAINPDGTEKWRFKTNDAITSAASIGKDG  188 (330)
T ss_dssp             EEEECSS---CCCSCCEECTTSCEEEEC------------------TTSEEEEECTTSCEEEEEECSSCCCSCCEECTTC
T ss_pred             EEEcCCC---ceeeeeEEcCCCEEEEEc------------------CCCEEEEECCCCCEeEEEecCCCceeeeEEcCCC
Confidence            2111111   224567888899999983                  4468999999833333333333445667777777


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhh
Q 016199          247 THLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYL  326 (393)
Q Consensus       247 ~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~  326 (393)
                       .+|++.   ++|++++.++..   ...+. ........+++|++|++|+++..                          
T Consensus       189 -~l~v~t---~~l~~~d~~g~~---~~~~~-~~~~~~~~~~~~~~g~l~v~t~~--------------------------  234 (330)
T 3hxj_A          189 -TIYFGS---DKVYAINPDGTE---KWNFY-AGYWTVTRPAISEDGTIYVTSLD--------------------------  234 (330)
T ss_dssp             -CEEEES---SSEEEECTTSCE---EEEEC-CSSCCCSCCEECTTSCEEEEETT--------------------------
T ss_pred             -EEEEEe---CEEEEECCCCcE---EEEEc-cCCcceeceEECCCCeEEEEcCC--------------------------
Confidence             577765   889999843321   11111 11234567889999999999863                          


Q ss_pred             CCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          327 GMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       327 ~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                               ++|+++|++|+.+..+........+.+...+|+||+++. ..+|.+++.
T Consensus       235 ---------~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-~ggl~~~d~  282 (330)
T 3hxj_A          235 ---------GHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSY-DGHLYAINP  282 (330)
T ss_dssp             ---------TEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECT-TCEEEEECT
T ss_pred             ---------CeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecC-CCCEEEECC
Confidence                     479999999999888775442111223344799999963 348999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.50  E-value=2.6e-11  Score=115.00  Aligned_cols=194  Identities=13%  Similarity=0.103  Sum_probs=122.5

Q ss_pred             cCCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCC---------CceeeeEECCCCCCCCceEEEEEe
Q 016199           82 LKGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTG---------GRPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~---------~~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      ...|.+++++++|+.||++. .++.|..|+.+.......+..+...+         ..+.+++++++|      ++|+++
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg------~l~v~~  158 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN------RLAVID  158 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS------CEEEEE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC------cEEEEe
Confidence            36799999999999899888 47788888875321111122222111         237789999999      799987


Q ss_pred             CCCc-eEEEeCC--c-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe
Q 016199          152 AYKG-LLKISGN--S-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE  226 (393)
Q Consensus       152 ~~~g-l~~id~~--g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~  226 (393)
                      ...+ |..++.+  | ...... ........+.++++++||+ +|+++..               ...-.++.++..+++
T Consensus       159 ~~~~~v~~~~~~~~g~~~~~~~-~~~~~g~~p~~~~~spdg~~l~v~~~~---------------~~~v~v~~~~~~~g~  222 (347)
T 3hfq_A          159 LGSDKVYVYNVSDAGQLSEQSV-LTMEAGFGPRHLVFSPDGQYAFLAGEL---------------SSQIASLKYDTQTGA  222 (347)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETT---------------TTEEEEEEEETTTTE
T ss_pred             CCCCEEEEEEECCCCcEEEeee-EEcCCCCCCceEEECCCCCEEEEEeCC---------------CCEEEEEEecCCCCc
Confidence            7554 6666643  4 332221 1111112466899999996 8887522               112235555554566


Q ss_pred             EEEEec--Cc-------cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--ccCCCCCCeEEECCCCC-E
Q 016199          227 TKVLVS--DL-------YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--ETLPGLPDNIRYDGEGH-Y  294 (393)
Q Consensus       227 ~~~~~~--~l-------~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~~l~g~P~~i~~d~~G~-l  294 (393)
                      .+.+..  ..       ..+.+++++|||+++|+++...++|..|+++..  +..+...  ......|.+++++++|+ +
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD--GHLTLIQQISTEGDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG--GCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred             eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC--CcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence            544321  11       236779999999999999988999999998632  2222221  11233689999999998 5


Q ss_pred             EEEEe
Q 016199          295 LIALA  299 (393)
Q Consensus       295 wva~~  299 (393)
                      |++..
T Consensus       301 ~v~~~  305 (347)
T 3hfq_A          301 VVVNQ  305 (347)
T ss_dssp             EEEET
T ss_pred             EEEEc
Confidence            56554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.49  E-value=2.7e-11  Score=113.82  Aligned_cols=235  Identities=15%  Similarity=0.167  Sum_probs=150.6

Q ss_pred             EEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc--
Q 016199           89 LYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS--  163 (393)
Q Consensus        89 a~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g--  163 (393)
                      +++.+++.+|+... ++.|..|+.++++    ....... ...| +++++++|     +.+|++.. ...|+.+|.++  
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~-~~~~s~dg-----~~l~~~~~~~~~i~~~d~~~~~   73 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLE----ILNQITLGYDFV-DTAITSDC-----SNVVVTSDFCQTLVQIETQLEP   73 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCC----EEEEEECCCCEE-EEEECSSS-----CEEEEEESTTCEEEEEECSSSS
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccc----eeeeEEccCCcc-eEEEcCCC-----CEEEEEeCCCCeEEEEECCCCc
Confidence            35666677787664 7799999988765    3333222 3345 99999999     24888876 45688888765  


Q ss_pred             e-EEEeeccCCcccccccc-EEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEE
Q 016199          164 T-VLLTDEAEGQKFKLTDG-VDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVV  241 (393)
Q Consensus       164 ~-~~l~~~~~g~~~~~~~~-l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~  241 (393)
                      . .... .. +   ..+.. ++++++|+.+++...              ....+.|..||..+++..........|++++
T Consensus        74 ~~~~~~-~~-~---~~~~~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  134 (331)
T 3u4y_A           74 PKVVAI-QE-G---QSSMADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFISTIPIPYDAVGIA  134 (331)
T ss_dssp             CEEEEE-EE-C---SSCCCCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEEEECCTTEEEEE
T ss_pred             eeEEec-cc-C---CCCccceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEEEECCCCccceE
Confidence            2 2111 11 1   22445 999999964444210              0112279999998887665554455689999


Q ss_pred             EcCCCCEEEEEeCCCCe-EEEEEecCCCC-cce-eeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhh
Q 016199          242 LSPDQTHLVYCETSMRR-CRKFYIKGKNA-GRV-EKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRK  317 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~r-i~~~~~~g~~~-~~~-~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~  317 (393)
                      ++|||+.+|+++...++ |..|+++.... ... .... .....|.+++++++|+ +|++....                
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~----------------  197 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG----------------  197 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT----------------
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC----------------
Confidence            99999999999888777 99999864321 011 1111 1223588999999998 77776533                


Q ss_pred             hhhhhhhhhCCCCCCCCCceEEEECC-CCcE---EEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          318 VSGMVVRYLGMPPMGKSSSGVFIVDL-DGKP---IAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~---~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                        +.|..+|. +++.   +..+..........+.+++.+||+++...+.|..+|++..
T Consensus       198 ------------------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          198 ------------------NSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             ------------------TEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             ------------------CeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence                              45777776 4666   6666544322222233445679999877788999997654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=1.7e-12  Score=128.27  Aligned_cols=187  Identities=12%  Similarity=0.124  Sum_probs=127.2

Q ss_pred             ccCCCceEEEecCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCC-
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAY-  153 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~-  153 (393)
                      ....|.+|+++++|+.||+....     ..++.++.++....  ...+. ....|.++++++ +|      +||+++.. 
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~--~~~l~-~~~~p~giavdp~~g------~lyv~d~~~  247 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKV--ITELT-KGQNCNGAETHPING------ELYFNSWNA  247 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCS--EEEEE-ECSSCCCEEECTTTC------CEEEEETTT
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceee--eeeec-cCCCceEEEEeCCCC------EEEEEECCC
Confidence            35779999999999988888752     25777776654210  12222 246799999999 88      99999975 


Q ss_pred             CceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCC--CeE-
Q 016199          154 KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT--KET-  227 (393)
Q Consensus       154 ~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t--~~~-  227 (393)
                      +.|+++++++  ...+.. ..+  ...+++|+++++|+ ||++|                 ....+|++++.+.  +++ 
T Consensus       248 ~~V~~~~~~~~~~~~~~~-~~~--~~~P~gia~~pdG~~lyv~d-----------------~~~~~I~~~~~d~~~~~~~  307 (430)
T 3tc9_A          248 GQVFRYDFTTQETTPLFT-IQD--SGWEFHIQFHPSGNYAYIVV-----------------VNQHYILRSDYDWKTKRLT  307 (430)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSS--SSCCEEEEECTTSSEEEEEE-----------------TTTTEEEEEEEETTTTEEC
T ss_pred             CEEEEEECCCCcEEEEEE-cCC--CCcceeEEEcCCCCEEEEEE-----------------CCCCEEEEEeCCccccccc
Confidence            4599999886  323321 111  24578999999997 99998                 3456788876542  332 


Q ss_pred             --EEEec---------------CccCCC-cEEEc--------CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc---
Q 016199          228 --KVLVS---------------DLYFAN-GVVLS--------PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET---  278 (393)
Q Consensus       228 --~~~~~---------------~l~~~n-gi~~s--------~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~---  278 (393)
                        ..+..               .+..|. |+++.        ++| .|||+++.+++|.+++.+|    ....+...   
T Consensus       308 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G----~v~~~~g~g~~  382 (430)
T 3tc9_A          308 TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQG----RVTTFAGRGSN  382 (430)
T ss_dssp             CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTS----EEEEEEECCTT
T ss_pred             ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCC----cEEEEEeCCCC
Confidence              22221               155687 88885        345 8999999999999998654    23323211   


Q ss_pred             -C----C---------CCCCeEEECC-CCCEEEEEecC
Q 016199          279 -L----P---------GLPDNIRYDG-EGHYLIALATE  301 (393)
Q Consensus       279 -l----~---------g~P~~i~~d~-~G~lwva~~~~  301 (393)
                       .    .         ..|.+|++|+ +|++||+....
T Consensus       383 ~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  420 (430)
T 3tc9_A          383 GTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN  420 (430)
T ss_dssp             SSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             CCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence             0    1         2699999998 68999998754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=1.5e-12  Score=121.78  Aligned_cols=180  Identities=10%  Similarity=0.101  Sum_probs=127.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-----CCceeeeEECCCCCCCCceEEEEEeCC----
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-----GGRPLGIAFANSDPDADRITMIVADAY----  153 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-----~~~p~gl~~d~~G~~~~~~~L~v~~~~----  153 (393)
                      ..|.+++++++|+ ||+++ +.+|++++++++.    .+.+...     ..+|+++++|++|      ++|+++..    
T Consensus        54 ~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~----~~~~~~~~~~~~~~~~~di~~d~dG------~l~~~~~~~~~~  121 (297)
T 3g4e_A           54 APVSSVALRQSGG-YVATI-GTKFCALNWKEQS----AVVLATVDNDKKNNRFNDGKVDPAG------RYFAGTMAEETA  121 (297)
T ss_dssp             SCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTE----EEEEEECCTTCSSEEEEEEEECTTS------CEEEEEEECCSB
T ss_pred             CceEEEEECCCCC-EEEEE-CCeEEEEECCCCc----EEEEEecCCCCCCCCCCCEEECCCC------CEEEecCCcccc
Confidence            4688899999998 88887 5689999988765    4444321     2458899999999      99999732    


Q ss_pred             --------CceEEEeCCc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeC-
Q 016199          154 --------KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP-  222 (393)
Q Consensus       154 --------~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~-  222 (393)
                              .+|+++++++ ...+..     .+..++++++++|| .+|+++                 +..++|++|+. 
T Consensus       122 ~~~~~~~~~~l~~~d~~g~~~~~~~-----~~~~pngi~~spdg~~lyv~~-----------------~~~~~i~~~~~d  179 (297)
T 3g4e_A          122 PAVLERHQGALYSLFPDHHVKKYFD-----QVDISNGLDWSLDHKIFYYID-----------------SLSYSVDAFDYD  179 (297)
T ss_dssp             TTBCCTTCEEEEEECTTSCEEEEEE-----EESBEEEEEECTTSCEEEEEE-----------------GGGTEEEEEEEC
T ss_pred             cccccCCCcEEEEEECCCCEEEEee-----ccccccceEEcCCCCEEEEec-----------------CCCCcEEEEecc
Confidence                    3599999887 433322     13457899999999 599997                 33467888864 


Q ss_pred             -CCCeEE---EEe---cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCeEEEC-CCCC
Q 016199          223 -VTKETK---VLV---SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYD-GEGH  293 (393)
Q Consensus       223 -~t~~~~---~~~---~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d-~~G~  293 (393)
                       .++.+.   .+.   .....|.|++++++| .+|++....++|.+|++++   ++....+ ..| ..|.++++. ++++
T Consensus       180 ~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~t---G~~~~~i-~~p~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          180 LQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVT---GKRLQTV-KLPVDKTTSCCFGGKNYS  254 (297)
T ss_dssp             TTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTT---CCEEEEE-ECSSSBEEEEEEESGGGC
T ss_pred             CCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCC---ceEEEEE-ECCCCCceEEEEeCCCCC
Confidence             556542   222   123568999999999 6999998889999999752   2222222 233 357889996 5654


Q ss_pred             -EEEEEecC
Q 016199          294 -YLIALATE  301 (393)
Q Consensus       294 -lwva~~~~  301 (393)
                       +||++...
T Consensus       255 ~L~vt~~~~  263 (297)
T 3g4e_A          255 EMYVTCARD  263 (297)
T ss_dssp             EEEEEEBCT
T ss_pred             EEEEEcCCc
Confidence             89988643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=1.9e-11  Score=113.55  Aligned_cols=224  Identities=12%  Similarity=0.109  Sum_probs=152.1

Q ss_pred             CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCC-CceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccC
Q 016199           94 SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG-GRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAE  172 (393)
Q Consensus        94 g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~  172 (393)
                      ++.|++++.+++|+.++.++++   .+-.+.... ..++.+++.++|      +++++ ...+++.+|++|..+......
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~---~~w~~~~~~~~~~~~~~~~pdG------~ilvs-~~~~V~~~d~~G~~~W~~~~~   74 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKE---IVWEYPLEKGWECNSVAATKAG------EILFS-YSKGAKMITRDGRELWNIAAP   74 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTE---EEEEEECCTTCCCCEEEECTTS------CEEEE-CBSEEEEECTTSCEEEEEECC
T ss_pred             CcEEEeeCCCCEEEEEECCCCe---EEEEeCCCccCCCcCeEECCCC------CEEEe-CCCCEEEECCCCCEEEEEcCC
Confidence            4567788889999999986654   122332212 368999999999      99995 577899999987222211111


Q ss_pred             CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe--c----CccCCCcEEEcCCC
Q 016199          173 GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV--S----DLYFANGVVLSPDQ  246 (393)
Q Consensus       173 g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~--~----~l~~~ngi~~s~dg  246 (393)
                      .  ...++++.+.++|++++++..                ..++++.+|++++.+..+.  .    ....+.++++.+||
T Consensus        75 ~--~~~~~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G  136 (276)
T 3no2_A           75 A--GCEMQTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKG  136 (276)
T ss_dssp             T--TCEEEEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred             C--CccccccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCC
Confidence            1  012457788899999998621                1568999998765554432  1    12356788999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhh
Q 016199          247 THLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYL  326 (393)
Q Consensus       247 ~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~  326 (393)
                      + ++++....++|..|+.+|+.   ...+  ..++.|.++.+.++|+++|+....                         
T Consensus       137 ~-~lv~~~~~~~v~~~d~~G~~---~w~~--~~~~~~~~~~~~~~g~~~v~~~~~-------------------------  185 (276)
T 3no2_A          137 N-YLVPLFATSEVREIAPNGQL---LNSV--KLSGTPFSSAFLDNGDCLVACGDA-------------------------  185 (276)
T ss_dssp             C-EEEEETTTTEEEEECTTSCE---EEEE--ECSSCCCEEEECTTSCEEEECBTT-------------------------
T ss_pred             C-EEEEecCCCEEEEECCCCCE---EEEE--ECCCCccceeEcCCCCEEEEeCCC-------------------------
Confidence            6 56778889999999986542   1222  234568889999999999987643                         


Q ss_pred             CCCCCCCCCceEEEECCC-CcEEEEeeCCC-----CCccEEEEE-eCCEEEEEecC----------CCeEEEEeCC
Q 016199          327 GMPPMGKSSSGVFIVDLD-GKPIAHYYDPE-----MSLISSAIK-IGDHLYCGSVH----------HRGILHLDVN  385 (393)
Q Consensus       327 ~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~-----~~~~~~~~~-~~g~Lyigs~~----------~~~i~~~~~~  385 (393)
                               +.|+.+|++ |+++..+...+     ...++.+.. .+|++|+++..          ...+..++.+
T Consensus       186 ---------~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~  252 (276)
T 3no2_A          186 ---------HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE  252 (276)
T ss_dssp             ---------SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT
T ss_pred             ---------CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC
Confidence                     459999998 99999986321     333444443 57999999863          3357777643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.47  E-value=2e-12  Score=127.97  Aligned_cols=186  Identities=11%  Similarity=0.073  Sum_probs=127.0

Q ss_pred             ccCCCceEEEecCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCC
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYK  154 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~  154 (393)
                      .+..|.+++++++|+ ||+....     ..++.++..+....  ..... ....|.++++++ +|      +|||++...
T Consensus       180 ~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~--~~~~~-~~~~P~giavd~~~G------~lyv~d~~~  249 (433)
T 4hw6_A          180 NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTE--RLSLC-NARGAKTCAVHPQNG------KIYYTRYHH  249 (433)
T ss_dssp             CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCC--EEEEE-ECSSBCCCEECTTTC------CEEECBTTC
T ss_pred             CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeec--ccccc-ccCCCCEEEEeCCCC------eEEEEECCC
Confidence            457899999999998 8888753     24777765543210  11222 356799999999 88      999998765


Q ss_pred             -ceEEEeCC-c-e-EEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCC--CCeE
Q 016199          155 -GLLKISGN-S-T-VLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV--TKET  227 (393)
Q Consensus       155 -gl~~id~~-g-~-~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~--t~~~  227 (393)
                       .|++++++ | . +.+.. ...  .....+|+++++|+ ||++|                 ....+|++++.+  ++.+
T Consensus       250 ~~V~~~d~~~g~~~~~~~~-~~~--~~~~~~ia~dpdG~~LYvad-----------------~~~~~I~~~~~d~~~~~~  309 (433)
T 4hw6_A          250 AMISSYDPATGTLTEEEVM-MDT--KGSNFHIVWHPTGDWAYIIY-----------------NGKHCIYRVDYNRETGKL  309 (433)
T ss_dssp             SEEEEECTTTCCEEEEEEE-CSC--CSSCEEEEECTTSSEEEEEE-----------------TTTTEEEEEEBCTTTCCB
T ss_pred             CEEEEEECCCCeEEEEEec-cCC--CCCcccEEEeCCCCEEEEEe-----------------CCCCEEEEEeCCCCCccc
Confidence             49999987 5 3 33321 111  12345799999996 99998                 445688887654  3432


Q ss_pred             ---EEEec---------------CccCCCcEEE---------cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec---
Q 016199          228 ---KVLVS---------------DLYFANGVVL---------SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE---  277 (393)
Q Consensus       228 ---~~~~~---------------~l~~~ngi~~---------s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~---  277 (393)
                         ..+..               .+..|.++++         +.+| .|||+++.+++|.+++.+|.    ...++.   
T Consensus       310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~----v~t~~G~g~  384 (433)
T 4hw6_A          310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGR----VTTYAGRGN  384 (433)
T ss_dssp             CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSE----EEEEECCCT
T ss_pred             CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCCCC----EEEEEeCCC
Confidence               12221               2567899999         6666 79999999999999986542    222221   


Q ss_pred             --------c-C-----CCCCCeEEEC-CCCCEEEEEecC
Q 016199          278 --------T-L-----PGLPDNIRYD-GEGHYLIALATE  301 (393)
Q Consensus       278 --------~-l-----~g~P~~i~~d-~~G~lwva~~~~  301 (393)
                              + +     -..|.+|++| ++|++||+....
T Consensus       385 ~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          385 SREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             TCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             CCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence                    1 0     1258899999 899999998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.47  E-value=7.1e-11  Score=110.75  Aligned_cols=189  Identities=12%  Similarity=0.142  Sum_probs=121.4

Q ss_pred             CCCceEEEecCCCEEEEEecC-CeEEEEEcC--CCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCED-GWIKRVTLN--DSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~-g~I~~~~~~--~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~  158 (393)
                      ..|.+++++++|+.||++..+ +.|..|+.+  ++. ......+. ..+.|.+++++++|     +.||++....+ |..
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~s~dg-----~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-LTFAAESA-LPGSLTHISTDHQG-----QFVFVGSYNAGNVSV  110 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEE-CSSCCSEEEECTTS-----SEEEEEETTTTEEEE
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-eeeccccc-cCCCCcEEEEcCCC-----CEEEEEecCCCeEEE
Confidence            578899999999989988875 889888876  333 00112222 23478999999999     24888876455 666


Q ss_pred             EeC-Cc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-CeEEEEe---
Q 016199          159 ISG-NS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-KETKVLV---  231 (393)
Q Consensus       159 id~-~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-~~~~~~~---  231 (393)
                      ++. ++ ...........  ..+++++++++| .+|+++                 ...+.|..||..+ ++.....   
T Consensus       111 ~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~-----------------~~~~~v~~~d~~~~~~~~~~~~~~  171 (343)
T 1ri6_A          111 TRLEDGLPVGVVDVVEGL--DGCHSANISPDNRTLWVPA-----------------LKQDRICLFTVSDDGHLVAQDPAE  171 (343)
T ss_dssp             EEEETTEEEEEEEEECCC--TTBCCCEECTTSSEEEEEE-----------------GGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             EECCCCccccccccccCC--CCceEEEECCCCCEEEEec-----------------CCCCEEEEEEecCCCceeeecccc
Confidence            665 33 11111112221  237789999999 477775                 1345788888766 5554221   


Q ss_pred             ---cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceee--eeccCC------CCCCeEEECCCCC-EEEEE
Q 016199          232 ---SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEK--FIETLP------GLPDNIRYDGEGH-YLIAL  298 (393)
Q Consensus       232 ---~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~--~~~~l~------g~P~~i~~d~~G~-lwva~  298 (393)
                         .....|.++++++||+.+|++....++|..|+++.. .+..+.  .....+      ..|..++++++|+ +|++.
T Consensus       172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          172 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence               123467889999999999999988899999998532 122111  111122      1234699999997 44444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.46  E-value=2.6e-11  Score=116.60  Aligned_cols=246  Identities=11%  Similarity=0.020  Sum_probs=146.5

Q ss_pred             cCCCceEEEecCCCEEEEEecCCeEEEEEcC-CCCCcceeeee-e-cCCCceeeeEECCCCCCCCceE-EEE--Ee----
Q 016199           82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLN-DSPADSLVHNW-I-NTGGRPLGIAFANSDPDADRIT-MIV--AD----  151 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~-~~~~~~~~~~~-~-~~~~~p~gl~~d~~G~~~~~~~-L~v--~~----  151 (393)
                      ...|..++++++|+.||+++.+ .|..|+.+ ++.    .... . ...+.|.+++++++|      + +|+  ++    
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~----~~~~~~~~~~g~~~~~~~spdg------~~l~~~~~~~~~~  107 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE----IVHEASHPIGGHPRANDADTNT------RAIFLLAAKQPPY  107 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE----EEEEEEEECCSSGGGGCTTSCC------EEEEEEECSSTTC
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC----EEEeeEeecCCCCccEEECCCC------CEEEEEEecCCcc
Confidence            4579999999999989988877 88888875 433    2222 1 122458889999999      7 343  32    


Q ss_pred             ---------CCCce--EEEeCCc-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEE
Q 016199          152 ---------AYKGL--LKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLL  218 (393)
Q Consensus       152 ---------~~~gl--~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~  218 (393)
                               ..+.+  +.++.+| ...............++++++++||+ +|+++.                 ..+.|+
T Consensus       108 ~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~-----------------~~~~v~  170 (365)
T 1jof_A          108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-----------------TANKLW  170 (365)
T ss_dssp             CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----------------TTTEEE
T ss_pred             eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC-----------------CCCEEE
Confidence                     12223  4444455 22111111001124578999999995 777762                 235788


Q ss_pred             EEeCC-CCeEEEEe--c---CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceee---eeccCC----C----
Q 016199          219 SFDPV-TKETKVLV--S---DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEK---FIETLP----G----  281 (393)
Q Consensus       219 ~~d~~-t~~~~~~~--~---~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~---~~~~l~----g----  281 (393)
                      .|+.+ +++.+.+.  .   ....|.+++++|||+.+|++....+++..|+++.. .++...   ....++    +    
T Consensus       171 ~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~  249 (365)
T 1jof_A          171 THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGIPDRDPE  249 (365)
T ss_dssp             EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTCCCBCTT
T ss_pred             EEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCcCCcccc
Confidence            88876 67654321  1   13458899999999999999887889988887531 222210   111122    1    


Q ss_pred             -----CCCeEE-ECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCce--EEEECCCCcEEEE--
Q 016199          282 -----LPDNIR-YDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSG--VFIVDLDGKPIAH--  350 (393)
Q Consensus       282 -----~P~~i~-~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~--v~~~d~~g~~~~~--  350 (393)
                           .|.+++ +++||+ +|++......                             ...+.  ++.++.+|+....  
T Consensus       250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~-----------------------------~~~~~i~v~~~~~~g~~~~~~~  300 (365)
T 1jof_A          250 TGKGLYRADVCALTFSGKYMFASSRANKF-----------------------------ELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             TSSBSEEEEEEEECTTSSEEEEEEEESST-----------------------------TSCCEEEEEEECTTSCEEEEEE
T ss_pred             cccccccccEEEECCCCCEEEEECCCCCC-----------------------------CCCCeEEEEEECCCCCEEEeee
Confidence                 367899 999998 5555432210                             00013  4555556775542  


Q ss_pred             -eeCCC--CCccEEEEE---eCCEEEEEecCCCeEEEEeCCC
Q 016199          351 -YYDPE--MSLISSAIK---IGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       351 -~~d~~--~~~~~~~~~---~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                       .....  ...+ .+.+   ++++||+++..++.|..++++.
T Consensus       301 ~~~~~~~~~~~~-a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          301 LSPTPTSGGHSN-AVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEECSSCCTTCC-CEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             eeecCCCCcccc-eecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence             22221  2222 2355   5789999987777777776543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.46  E-value=7.1e-12  Score=118.27  Aligned_cols=182  Identities=13%  Similarity=0.171  Sum_probs=126.3

Q ss_pred             CCCceEEEecCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCC-
Q 016199           83 KGPEDLLYDAHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAY-  153 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-  153 (393)
                      ..|.+++++++|+ +|+++..     ++|++++++++.    ...+.   .....|.+++++++|      ++|+++.. 
T Consensus        87 ~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~i~~d~~g------~l~v~~~~~  155 (333)
T 2dg1_A           87 ANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDN----LQDIIEDLSTAYCIDDMVFDSKG------GFYFTDFRG  155 (333)
T ss_dssp             SSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCS----CEEEECSSSSCCCEEEEEECTTS------CEEEEECCC
T ss_pred             CCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCE----EEEEEccCccCCcccceEECCCC------CEEEEeccc
Confidence            5688999999997 7777654     489999988765    43222   123568999999999      99999764 


Q ss_pred             ------CceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          154 ------KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       154 ------~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                            .+|+++++++  ...+..     ....+++++++++|+ +|+++                 ...++|++||..+
T Consensus       156 ~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~i~~~~dg~~l~v~~-----------------~~~~~i~~~d~~~  213 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRTVTPIIQ-----NISVANGIALSTDEKVLWVTE-----------------TTANRLHRIALED  213 (333)
T ss_dssp             BTTBCCEEEEEECTTSCCEEEEEE-----EESSEEEEEECTTSSEEEEEE-----------------GGGTEEEEEEECT
T ss_pred             cccCCCceEEEEeCCCCEEEEeec-----CCCcccceEECCCCCEEEEEe-----------------CCCCeEEEEEecC
Confidence                  4699999875  333321     123467899999995 99986                 2345799998743


Q ss_pred             --CeEEEE-----e--cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC--C---CCCeEEECC
Q 016199          225 --KETKVL-----V--SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP--G---LPDNIRYDG  290 (393)
Q Consensus       225 --~~~~~~-----~--~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~--g---~P~~i~~d~  290 (393)
                        +....+     .  .+...|+++++++|| .+|++....++|.+|+.++..   ...+.....  +   .|.++++++
T Consensus       214 ~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~---~~~~~~~~~~~g~~~~~~~~~~~~  289 (333)
T 2dg1_A          214 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYP---IGQILIPGRDEGHMLRSTHPQFIP  289 (333)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCE---EEEEECTTGGGTCSCBCCEEEECT
T ss_pred             CCcCcccccceEEEecCCCCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCE---EEEEEcCCCccccccCcceEEECC
Confidence              233221     1  122468899999999 488988778899999875432   222221110  1   588999998


Q ss_pred             CC-CEEEEEecC
Q 016199          291 EG-HYLIALATE  301 (393)
Q Consensus       291 ~G-~lwva~~~~  301 (393)
                      +| .+|++...+
T Consensus       290 dg~~L~v~~~~g  301 (333)
T 2dg1_A          290 GTNQLIICSNDI  301 (333)
T ss_dssp             TSCEEEEEEECG
T ss_pred             CCCEEEEEeCcc
Confidence            86 699988753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.46  E-value=1.5e-10  Score=110.45  Aligned_cols=246  Identities=15%  Similarity=0.161  Sum_probs=141.7

Q ss_pred             ccCCCceEEEecCCCEEEEEecC----CeEEEEEcCC--CCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCED----GWIKRVTLND--SPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK  154 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~----g~I~~~~~~~--~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~  154 (393)
                      ....|..++++++|+.||+++.+    +.|..|+.+.  +. ...+......+..|..+++  +|     +.||+++...
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~-~~~~~~~~~~~~~p~~~~~--dg-----~~l~~~~~~~  119 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT-LHLLNTQKTMGADPCYLTT--NG-----KNIVTANYSG  119 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE-EEEEEEEECSSSCEEEEEE--CS-----SEEEEEETTT
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc-EEEeeEeccCCCCcEEEEE--CC-----CEEEEEECCC
Confidence            34789999999999999998874    6775555443  32 0012222223457899998  44     1688887654


Q ss_pred             c-eEEEeC--Cc-eEEEee--ccCC-------ccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199          155 G-LLKISG--NS-TVLLTD--EAEG-------QKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSF  220 (393)
Q Consensus       155 g-l~~id~--~g-~~~l~~--~~~g-------~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~  220 (393)
                      + +..++.  ++ ...+..  ...+       .....++++++++||+ +|+++.                 ..+.+..|
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----------------~~~~v~v~  182 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL-----------------GTDQIHKF  182 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET-----------------TTTEEEEE
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC-----------------CCCEEEEE
Confidence            4 555554  33 211110  0111       1123457899999996 888862                 23345554


Q ss_pred             --eCCCC----e-E-------EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC---CCC
Q 016199          221 --DPVTK----E-T-------KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP---GLP  283 (393)
Q Consensus       221 --d~~t~----~-~-------~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~---g~P  283 (393)
                        +..++    + +       .........|.+++++|||+.+|+++...++|..|++++.+......+. ..+   ..|
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~~~~  261 (361)
T 3scy_A          183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNAQGS  261 (361)
T ss_dssp             EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCCCCE
T ss_pred             EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCCCCc
Confidence              55443    2 2       1122234567899999999999999988899999998632211111111 111   135


Q ss_pred             CeEEECCCCCE-EEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcE--EEEeeCCCCCcc
Q 016199          284 DNIRYDGEGHY-LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKP--IAHYYDPEMSLI  359 (393)
Q Consensus       284 ~~i~~d~~G~l-wva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~--~~~~~d~~~~~~  359 (393)
                      .++++++||++ |++.....+.                               -.++.+++ +|+.  +..+...... .
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~-------------------------------i~v~~~~~~~g~~~~~~~~~~g~~~-~  309 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADG-------------------------------VAIFKVDETNGTLTKVGYQLTGIHP-R  309 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCE-------------------------------EEEEEECTTTCCEEEEEEEECSSCC-C
T ss_pred             ccEEECCCCCEEEEECCCCCCE-------------------------------EEEEEEcCCCCcEEEeeEecCCCCC-c
Confidence            58999999994 4554430110                               12555663 4553  3333332211 1


Q ss_pred             EEEE-EeCCEEEEEecCCCeEEEEeC
Q 016199          360 SSAI-KIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       360 ~~~~-~~~g~Lyigs~~~~~i~~~~~  384 (393)
                      .... +++.+||+++...+.|..+++
T Consensus       310 ~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          310 NFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             eEEECCCCCEEEEEECCCCCEEEEEE
Confidence            2233 345679999877777777543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.45  E-value=3.1e-11  Score=112.95  Aligned_cols=236  Identities=10%  Similarity=0.054  Sum_probs=149.7

Q ss_pred             CCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCC------ceeeeEECCCCCCCCceEEEEEe-----
Q 016199           84 GPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGG------RPLGIAFANSDPDADRITMIVAD-----  151 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~------~p~gl~~d~~G~~~~~~~L~v~~-----  151 (393)
                      .|.+++++++|+.+|++.. ++.|..++..+++    .........      .|.+++++++|     +.+|+++     
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~l~~~~~~~~~  105 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE----TLGRIDLSTPEERVKSLFGAALSPDG-----KTLAIYESPVRL  105 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC----EEEEEECCBTTEEEECTTCEEECTTS-----SEEEEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC----eEeeEEcCCcccccccccceEECCCC-----CEEEEEeccccc
Confidence            4899999999988887665 6789999987765    332222222      68899999998     3688885     


Q ss_pred             -------CCCceEEEeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199          152 -------AYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV  223 (393)
Q Consensus       152 -------~~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~  223 (393)
                             ....|..+|.++.+.......+   ..+++++++++|+ +|+++                    +.|+.+|..
T Consensus       106 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~--------------------~~i~~~d~~  162 (337)
T 1pby_B          106 ELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGLG--------------------RDLHVMDPE  162 (337)
T ss_dssp             CSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEES--------------------SSEEEEETT
T ss_pred             ccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEeC--------------------CeEEEEECC
Confidence                   2366888887651111111111   2367899999995 77772                    359999998


Q ss_pred             CCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC-----------------------eEEEEEecCCCCcceeeeeccCC
Q 016199          224 TKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR-----------------------RCRKFYIKGKNAGRVEKFIETLP  280 (393)
Q Consensus       224 t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~-----------------------ri~~~~~~g~~~~~~~~~~~~l~  280 (393)
                      +++..........+..+++++||+.+|++....+                       +|..+++++.+.. ...+ ....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-~~~~  240 (337)
T 1pby_B          163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-RIMD  240 (337)
T ss_dssp             TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-EECS
T ss_pred             CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-CCCC
Confidence            8876544433232345578999988877765444                       4577776533211 1111 1223


Q ss_pred             CCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCcc
Q 016199          281 GLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLI  359 (393)
Q Consensus       281 g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~  359 (393)
                      ..|.+++++++|++.+...                                    +.|..+|.+ ++.+..+..+.....
T Consensus       241 ~~~~~~~~s~dg~~l~~~~------------------------------------~~v~~~d~~~~~~~~~~~~~~~~~~  284 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGAY------------------------------------NVLESFDLEKNASIKRVPLPHSYYS  284 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEE------------------------------------SEEEEEETTTTEEEEEEECSSCCCE
T ss_pred             CceeeEEECCCCCEEEEeC------------------------------------CeEEEEECCCCcCcceecCCCceee
Confidence            4577899999998443332                                    358888875 566666654432222


Q ss_pred             EEEEEeCCEEEEEecCCCeEEEEeCCCCCCC
Q 016199          360 SSAIKIGDHLYCGSVHHRGILHLDVNQHPAR  390 (393)
Q Consensus       360 ~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~  390 (393)
                      ..+.+++.+||+++ ..+.|..++++....+
T Consensus       285 ~~~s~dg~~l~~~~-~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          285 VNVSTDGSTVWLGG-ALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEECTTSCEEEEES-BSSEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEc-CCCcEEEEECcCCcEE
Confidence            22233456799985 4678999998765543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.43  E-value=1.6e-11  Score=115.06  Aligned_cols=179  Identities=13%  Similarity=0.173  Sum_probs=122.7

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-----CCCceeeeEECCCCCCCCceEEEEEeC----
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-----TGGRPLGIAFANSDPDADRITMIVADA----  152 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-----~~~~p~gl~~d~~G~~~~~~~L~v~~~----  152 (393)
                      ..|.+++++++|+ ||+++. +++|.+++.+ +.    .+.+..     ....|.+++++++|      ++|++|.    
T Consensus        86 ~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~----~~~~~~~~~~~~~~~~~~i~~d~dG------~l~~td~~~g~  153 (305)
T 3dr2_A           86 AFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQ----AHLLVGRYAGKRLNSPNDLIVARDG------AIWFTDPPFGL  153 (305)
T ss_dssp             SCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC----EEEEECEETTEECSCCCCEEECTTS------CEEEECCSGGG
T ss_pred             CccceeeECCCCC-EEEEECCCCEEEEECCC-CC----EEEEEeccCCCccCCCCCEEECCCC------CEEEeCcCCCc
Confidence            5688999999997 888876 4789999986 33    333321     12457899999999      9999652    


Q ss_pred             --------------CCceEEEeCC-c-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCc
Q 016199          153 --------------YKGLLKISGN-S-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNG  215 (393)
Q Consensus       153 --------------~~gl~~id~~-g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g  215 (393)
                                    ..+|++++++ + .+.+.      .+..++++++++||. ||+++....            ....+
T Consensus       154 ~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------~~~~p~gl~~spdg~~lyv~~~~~~------------~~~~~  215 (305)
T 3dr2_A          154 RKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------DLDHPNGLAFSPDEQTLYVSQTPEQ------------GHGSV  215 (305)
T ss_dssp             SCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------EESSEEEEEECTTSSEEEEEECCC---------------CCC
T ss_pred             cccccccccccccCCCeEEEEcCCCCcEEEEe------cCCCCcceEEcCCCCEEEEEecCCc------------CCCCC
Confidence                          2469999985 4 44432      234578999999995 999974210            01135


Q ss_pred             EEEEEeCCCCeEE---EEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCC
Q 016199          216 RLLSFDPVTKETK---VLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE  291 (393)
Q Consensus       216 ~l~~~d~~t~~~~---~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~  291 (393)
                      +|++|+..++.+.   .+.. ....|+|++++++|+ +|++.  .++|++|+.+|+.   ...+.  .+..|.+++++++
T Consensus       216 ~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~~---~~~~~--~~~~~~~~~f~~d  287 (305)
T 3dr2_A          216 EITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQL---LGHIP--TPGTASNCTFDQA  287 (305)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSCE---EEEEE--CSSCCCEEEECTT
T ss_pred             EEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCCE---EEEEE--CCCceeEEEEeCC
Confidence            7999987654321   2221 245689999999996 88876  4679999976542   22222  3335889999877


Q ss_pred             CC-EEEEEe
Q 016199          292 GH-YLIALA  299 (393)
Q Consensus       292 G~-lwva~~  299 (393)
                      |+ +|+++.
T Consensus       288 ~~~L~it~~  296 (305)
T 3dr2_A          288 QQRLFITGG  296 (305)
T ss_dssp             SCEEEEEET
T ss_pred             CCEEEEEcC
Confidence            65 999876

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.42  E-value=1.8e-11  Score=117.83  Aligned_cols=177  Identities=11%  Similarity=0.077  Sum_probs=113.8

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee----ecCCCceeeeEECC----CCCCCCce
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW----INTGGRPLGIAFAN----SDPDADRI  145 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~----~~~~~~p~gl~~d~----~G~~~~~~  145 (393)
                      .+.+.+ .+..|.+|+++++|+.||++...|+|++++.++... ..+..+    ....+.+++|++++    +|      
T Consensus        10 ~~~va~-~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g------   81 (353)
T 2g8s_A           10 VEVLQD-KLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSR------   81 (353)
T ss_dssp             EEEEEE-EESSEEEEEECSTTCCEEEEETTTEEEEEETTTEEC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHC------
T ss_pred             EEEEEC-CCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCcee-eEecCCcccccCCCCCceeEEECCCCCCCC------
Confidence            344545 478999999999996488888899999998654320 001111    11134689999998    58      


Q ss_pred             EEEEEeCC--------CceEEEeCCc-------eEEEeeccCC--ccccccccEEEcCCCcEEEEeCCCccchhhheehh
Q 016199          146 TMIVADAY--------KGLLKISGNS-------TVLLTDEAEG--QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDI  208 (393)
Q Consensus       146 ~L~v~~~~--------~gl~~id~~g-------~~~l~~~~~g--~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~  208 (393)
                      .||++...        ..|.+++.++       .+.+......  ....++++|++++||.||++.......  ....+ 
T Consensus        82 ~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~--~~~q~-  158 (353)
T 2g8s_A           82 RIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQR--PTAQD-  158 (353)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCG--GGGGC-
T ss_pred             EEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCC--CccCC-
Confidence            99999653        2477775431       2222222221  122457789999999999996432110  00111 


Q ss_pred             cccCCCcEEEEEeCCCC-------------eEEEEecCccCCCcEEEcCCCCEEEEEeCCCC---eEEEE
Q 016199          209 FEGKPNGRLLSFDPVTK-------------ETKVLVSDLYFANGVVLSPDQTHLVYCETSMR---RCRKF  262 (393)
Q Consensus       209 ~e~~~~g~l~~~d~~t~-------------~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~---ri~~~  262 (393)
                       .....|+|+|+++++.             ..+.+..++..|.|++++++...||++|....   +|.+.
T Consensus       159 -~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i  227 (353)
T 2g8s_A          159 -LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIP  227 (353)
T ss_dssp             -TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECC
T ss_pred             -CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEe
Confidence             1134578999999864             34556778888999999995448999998743   45443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=3.6e-11  Score=114.78  Aligned_cols=188  Identities=7%  Similarity=0.094  Sum_probs=127.2

Q ss_pred             CccCCCceEEEecCCCEEEEEec------CCeEEEEEcCCCCCcceeeeeec------CCCceeeeEECC-CCCCCCceE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCE------DGWIKRVTLNDSPADSLVHNWIN------TGGRPLGIAFAN-SDPDADRIT  146 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~------~g~I~~~~~~~~~~~~~~~~~~~------~~~~p~gl~~d~-~G~~~~~~~  146 (393)
                      +.+..|.++++|++|+ ||+.+.      .++|++|++++++   ....+..      ....+.++++++ +|      .
T Consensus        64 ~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g------~  133 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHN------F  133 (343)
T ss_dssp             CCCSCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTT------E
T ss_pred             cceeEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCCC------E
Confidence            4568899999999985 877654      4789999988654   1222321      123579999996 57      9


Q ss_pred             EEEEeC----CCceEEEeCCc--eEEEeec------------cCCccc-------------cccccEEEcCCC-cEEEEe
Q 016199          147 MIVADA----YKGLLKISGNS--TVLLTDE------------AEGQKF-------------KLTDGVDVADDG-MIYFTD  194 (393)
Q Consensus       147 L~v~~~----~~gl~~id~~g--~~~l~~~------------~~g~~~-------------~~~~~l~~d~dG-~l~~td  194 (393)
                      +|+++.    ..+|..+|.++  .......            .+|..+             ..+++|++++|| .||+++
T Consensus       134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~  213 (343)
T 2qe8_A          134 VYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP  213 (343)
T ss_dssp             EEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred             EEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence            999986    35688888753  2222111            111111             236899999999 699997


Q ss_pred             CCCccchhhheehhcccCCCcEEEEEeCC---CCe---------EEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199          195 ASNKYYLREYILDIFEGKPNGRLLSFDPV---TKE---------TKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKF  262 (393)
Q Consensus       195 ~~~~~~~~~~~~~~~e~~~~g~l~~~d~~---t~~---------~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~  262 (393)
                      .                 ...+|++++..   .+.         +..+ .....|+|+++++|| .+|+++...++|.+|
T Consensus       214 ~-----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G-~l~va~~~~~~V~~~  274 (343)
T 2qe8_A          214 M-----------------HSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDH-NIYVGDLAHSAIGVI  274 (343)
T ss_dssp             S-----------------SCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTC-CEEEEEGGGTEEEEE
T ss_pred             C-----------------CCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCC-CEEEEccCCCeEEEE
Confidence            3                 23478998742   111         1111 123479999999998 699999999999999


Q ss_pred             Ee-cCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEec
Q 016199          263 YI-KGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       263 ~~-~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      +. +|    +.+.+... .-..|.+++++++|++||+...
T Consensus       275 d~~~G----~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          275 TSADR----AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             ETTTT----EEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             ECCCC----CEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence            97 43    33444322 1246999999999999998764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=2.7e-11  Score=120.74  Aligned_cols=189  Identities=13%  Similarity=0.109  Sum_probs=125.9

Q ss_pred             ccCCCceEEE-------ecCCCEEEEEecCC-------eEEEEEcCC-CCCc--ceeeeeecCCCceeeeEECC-CCCCC
Q 016199           81 VLKGPEDLLY-------DAHSKLIYTGCEDG-------WIKRVTLND-SPAD--SLVHNWINTGGRPLGIAFAN-SDPDA  142 (393)
Q Consensus        81 ~~~~Pe~ia~-------d~~g~~L~~~~~~g-------~I~~~~~~~-~~~~--~~~~~~~~~~~~p~gl~~d~-~G~~~  142 (393)
                      .+..|.+|++       +++|+.||+....+       .|+.++.+. +.-.  .....+. ....|.++++++ +|   
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g---  259 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPING---  259 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTC---
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCC---
Confidence            3456999999       99998899887654       378886543 1200  0001222 245799999999 56   


Q ss_pred             CceEEEEEeCCCc-eEEEeCC-------c--e-E-----------EEeeccCCccccccccEEEcCCCc-EEEEeCCCcc
Q 016199          143 DRITMIVADAYKG-LLKISGN-------S--T-V-----------LLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKY  199 (393)
Q Consensus       143 ~~~~L~v~~~~~g-l~~id~~-------g--~-~-----------~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~  199 (393)
                         .||+++...+ |++++++       +  . +           .+.. ...  ...+.+|+++++|+ |||+|     
T Consensus       260 ---~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-~~~--~~~p~~ia~~p~G~~lYvaD-----  328 (496)
T 3kya_A          260 ---ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-IAD--PSWEFQIFIHPTGKYAYFGV-----  328 (496)
T ss_dssp             ---CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-CSS--SSCCEEEEECTTSSEEEEEE-----
T ss_pred             ---eEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe-cCC--CCCceEEEEcCCCCEEEEEe-----
Confidence               8999998776 9999976       3  2 0           1111 111  23467899999997 89998     


Q ss_pred             chhhheehhcccCCCcEEEEEeC--CCCeE---EEEec---------------CccCCC-cEEEc-------CCCCEEEE
Q 016199          200 YLREYILDIFEGKPNGRLLSFDP--VTKET---KVLVS---------------DLYFAN-GVVLS-------PDQTHLVY  251 (393)
Q Consensus       200 ~~~~~~~~~~e~~~~g~l~~~d~--~t~~~---~~~~~---------------~l~~~n-gi~~s-------~dg~~l~v  251 (393)
                                  ....+|++++.  .++.+   +.++.               .+..|. +++++       .+| .|||
T Consensus       329 ------------~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyV  395 (496)
T 3kya_A          329 ------------INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYF  395 (496)
T ss_dssp             ------------TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEE
T ss_pred             ------------CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEE
Confidence                        44568888554  44433   23321               245688 78876       445 7999


Q ss_pred             EeCCCCeEEEEEecCCCCcceeeee-----------------cc-C-----CCCCCeEEECCC-CCEEEEEecC
Q 016199          252 CETSMRRCRKFYIKGKNAGRVEKFI-----------------ET-L-----PGLPDNIRYDGE-GHYLIALATE  301 (393)
Q Consensus       252 ~~~~~~ri~~~~~~g~~~~~~~~~~-----------------~~-l-----~g~P~~i~~d~~-G~lwva~~~~  301 (393)
                      +++.++||.+++.+|.    ...++                 ++ +     -..|.+|++|++ |++||+....
T Consensus       396 aD~~N~rIr~i~~~G~----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N  465 (496)
T 3kya_A          396 VDRLNFCVRKVTPEGI----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG  465 (496)
T ss_dssp             EEGGGTEEEEECTTCB----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCEEEEEeCCCC----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence            9999999999996552    22222                 11 0     024889999997 9999998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.38  E-value=6.3e-10  Score=104.23  Aligned_cols=191  Identities=13%  Similarity=0.134  Sum_probs=119.2

Q ss_pred             CCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe-CCCceEEEeC
Q 016199           84 GPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD-AYKGLLKISG  161 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~-~~~gl~~id~  161 (393)
                      .|.+++++++|+.||++.. ++.|..|+.+.+.... ..........+.+++++++|     +.+|+++ ..+.|..++.
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s~dg-----~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG-VVDVVEGLDGCHSANISPDN-----RTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE-EEEEECCCTTBCCCEECTTS-----SEEEEEEGGGTEEEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc-ccccccCCCCceEEEECCCC-----CEEEEecCCCCEEEEEEe
Confidence            7999999999998888776 7778888874221000 11222334568999999998     2588887 3455777664


Q ss_pred             C--c-eEEEee-ccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeC--CCCeEEEEe--c
Q 016199          162 N--S-TVLLTD-EAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDP--VTKETKVLV--S  232 (393)
Q Consensus       162 ~--g-~~~l~~-~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~--~t~~~~~~~--~  232 (393)
                      +  + ...... .........+.+++++++|. +|+++                 ...+.+..|+.  .+++.+...  .
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~-----------------~~~~~i~~~~~~~~~g~~~~~~~~~  221 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN-----------------ELNSSVDVWELKDPHGNIECVQTLD  221 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE-----------------TTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe-----------------CCCCEEEEEEecCCCCcEEEEeecc
Confidence            3  4 322110 01111113466899999995 77775                 23456777776  345443221  1


Q ss_pred             ----C---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCeEEECCCCC-EEEEE
Q 016199          233 ----D---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE-TLPGLPDNIRYDGEGH-YLIAL  298 (393)
Q Consensus       233 ----~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-~l~g~P~~i~~d~~G~-lwva~  298 (393)
                          +   ...+.++++++||+.+|++....+.|..|+++.. .+..+.... ...+.|.+++++++|+ +|++.
T Consensus       222 ~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          222 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred             ccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-CCceEEeeeecCCCccceEEECCCCCEEEEec
Confidence                1   1234479999999999999988899999998631 111221110 1223488999999999 45544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.37  E-value=3.1e-10  Score=109.02  Aligned_cols=225  Identities=18%  Similarity=0.217  Sum_probs=144.6

Q ss_pred             EEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCceEEEeeccCCcc
Q 016199           97 IYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNSTVLLTDEAEGQK  175 (393)
Q Consensus        97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g~~~l~~~~~g~~  175 (393)
                      +.++..++.|..|+.++++    ..........+.+++++++|     +.++++.. .+.|..+|.+..+.+.....+  
T Consensus         5 ~vs~~~d~~v~v~d~~~~~----~~~~~~~~~~~~~~~~s~dg-----~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--   73 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSNK----VTATIPVGSNPMGAVISPDG-----TKVYVANAHSNDVSIIDTATNNVIATVPAG--   73 (391)
T ss_dssp             EEEETTTTEEEEEETTTTE----EEEEEECSSSEEEEEECTTS-----SEEEEEEGGGTEEEEEETTTTEEEEEEECS--
T ss_pred             EEEcCCCCEEEEEECCCCe----EEEEeecCCCcceEEECCCC-----CEEEEECCCCCeEEEEECCCCeEEEEEECC--
Confidence            3345568899999988664    33333334568999999998     24667654 445778887541111111111  


Q ss_pred             ccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeC
Q 016199          176 FKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       176 ~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~  254 (393)
                       ..+.+++++++|. ||++.                 ...+.|+.||..+++..........+.++++++||+.+|++..
T Consensus        74 -~~v~~~~~spdg~~l~~~~-----------------~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  135 (391)
T 1l0q_A           74 -SSPQGVAVSPDGKQVYVTN-----------------MASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN  135 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET
T ss_pred             -CCccceEECCCCCEEEEEE-----------------CCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC
Confidence             1467899999995 77774                 3346899999998877655554556789999999999999998


Q ss_pred             CCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCC
Q 016199          255 SMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGK  333 (393)
Q Consensus       255 ~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  333 (393)
                      ..+.|..|++...   +..... .....|..++++++|+ +|++....                                
T Consensus       136 ~~~~v~~~d~~~~---~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~--------------------------------  179 (391)
T 1l0q_A          136 GDKTVSVINTVTK---AVINTV-SVGRSPKGIAVTPDGTKVYVANFDS--------------------------------  179 (391)
T ss_dssp             TTTEEEEEETTTT---EEEEEE-ECCSSEEEEEECTTSSEEEEEETTT--------------------------------
T ss_pred             CCCEEEEEECCCC---cEEEEE-ecCCCcceEEECCCCCEEEEEeCCC--------------------------------
Confidence            8999999998532   222222 1223467899999997 45654432                                


Q ss_pred             CCceEEEECCC-CcEEEEeeCCCCCccEEEEEeCCEEEEEec--CCCeEEEEeCCCCC
Q 016199          334 SSSGVFIVDLD-GKPIAHYYDPEMSLISSAIKIGDHLYCGSV--HHRGILHLDVNQHP  388 (393)
Q Consensus       334 ~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~--~~~~i~~~~~~~~~  388 (393)
                        +.|..+|.+ ++.+..+............+++.+||+++.  ....|..+|+....
T Consensus       180 --~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          180 --MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             --TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             --CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence              457777764 455555543321111112234467888876  56788888876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.37  E-value=2.6e-10  Score=116.02  Aligned_cols=232  Identities=13%  Similarity=0.038  Sum_probs=154.4

Q ss_pred             EEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC--CceE
Q 016199           89 LYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG--NSTV  165 (393)
Q Consensus        89 a~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~--~g~~  165 (393)
                      ++++++. +|++. .++.|..|+..+++    .......+..+++++++++|     +.||+++..+.|..+|.  ...+
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~----~~~~i~~g~~~~~v~~spdg-----~~l~v~~~d~~V~v~D~~~~t~~  213 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKK----IVKVIDTGYAVHISRMSASG-----RYLLVIGRDARIDMIDLWAKEPT  213 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCC----EEEEEECSTTEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCce----EEEEEecCcccceEEECCCC-----CEEEEECCCCeEEEEECcCCCCc
Confidence            4788875 66554 47899999988765    33332334458999999999     36899987777888898  4422


Q ss_pred             EEeeccCCccccccccEEEcC----CC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-------
Q 016199          166 LLTDEAEGQKFKLTDGVDVAD----DG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-------  233 (393)
Q Consensus       166 ~l~~~~~g~~~~~~~~l~~d~----dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-------  233 (393)
                      .+.....+   ..+.++++++    || .+|+++                 ...+.|..+|..+++.......       
T Consensus       214 ~~~~i~~g---~~p~~va~sp~~~~dg~~l~v~~-----------------~~~~~v~v~D~~t~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          214 KVAEIKIG---IEARSVESSKFKGYEDRYTIAGA-----------------YWPPQFAIMDGETLEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             EEEEEECC---SEEEEEEECCSTTCTTTEEEEEE-----------------EESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EEEEEecC---CCcceEEeCCCcCCCCCEEEEEE-----------------ccCCeEEEEeccccccceeecccCcccCc
Confidence            22211112   2467899999    98 577775                 1235688889887765433221       


Q ss_pred             -----ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE-EEEecCcchhhh
Q 016199          234 -----LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL-IALATEFSTYWD  307 (393)
Q Consensus       234 -----l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw-va~~~~r~~~~~  307 (393)
                           -..+.++.++++++.+|++....++|..++....+......+  ....+|.+++++++|+++ ++....      
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~------  345 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNS------  345 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGG------
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECCCCCEEEEEecCC------
Confidence                 124568999999999999999999999999864322121122  123478999999999954 454432      


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCC----CccEEEEEeCCEEEEEec-CCCeEEE
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEM----SLISSAIKIGDHLYCGSV-HHRGILH  381 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~----~~~~~~~~~~g~Lyigs~-~~~~i~~  381 (393)
                                                  +.|..+|. +|+++..+.....    ....+..++++.+|+++. ..+.|..
T Consensus       346 ----------------------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v  397 (543)
T 1nir_A          346 ----------------------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISL  397 (543)
T ss_dssp             ----------------------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             ----------------------------CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEE
Confidence                                        45778886 5777777764331    122332334588999874 5688999


Q ss_pred             EeCCC
Q 016199          382 LDVNQ  386 (393)
Q Consensus       382 ~~~~~  386 (393)
                      ++.+.
T Consensus       398 ~d~~~  402 (543)
T 1nir_A          398 IGTDP  402 (543)
T ss_dssp             EECCT
T ss_pred             EEeCC
Confidence            99876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.36  E-value=6.3e-10  Score=108.38  Aligned_cols=256  Identities=12%  Similarity=0.084  Sum_probs=160.3

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKISGN  162 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~  162 (393)
                      ...+++++++++.++++..++.|..|+.+++.   ....+......+.+++++++|     +.+|++... +.|..+|.+
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLA---YKATVDLTGKWSKILLYDPIR-----DLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---EEEEEECSSSSEEEEEEETTT-----TEEEEEETTTTEEEEEETT
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCce---EEEEEcCCCCCeeEEEEcCCC-----CEEEEEecCCCcEEEEECC
Confidence            34558898888766666778999999987654   133443345678999999988     257677643 458888875


Q ss_pred             ceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEE
Q 016199          163 STVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVV  241 (393)
Q Consensus       163 g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~  241 (393)
                      ..+.+. .....  ..+.+++++++| .+|++......         . ....+.|+.||..+++..........+.+++
T Consensus       243 ~~~~~~-~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~---------~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  309 (433)
T 3bws_A          243 TKLEIR-KTDKI--GLPRGLLLSKDGKELYIAQFSASN---------Q-ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIV  309 (433)
T ss_dssp             TTEEEE-ECCCC--SEEEEEEECTTSSEEEEEEEESCT---------T-CSCCEEEEEEETTTTEEEEEEEEEECEEEEE
T ss_pred             CCcEEE-EecCC--CCceEEEEcCCCCEEEEEECCCCc---------c-ccCCCeEEEEECCCCcEEeeccCCCCcceEE
Confidence            411111 11111  236789999999 56666421100         0 0135789999998887655443334678899


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhh
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSG  320 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~  320 (393)
                      +++|++.+|++....++|..|++++.   +...... ....+.+++++++|+ +|++.........              
T Consensus       310 ~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~--------------  371 (433)
T 3bws_A          310 SGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTE--------------  371 (433)
T ss_dssp             ECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTT--------------
T ss_pred             ECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccc--------------
Confidence            99999999999999999999998632   2222221 234578899999998 5665543211000              


Q ss_pred             hhhhhhCCCCC-CCCCceEEEECC-CCcEEEEeeCCCCCccEEEE-EeCCEEEEEecCCCeEEEEeCCC
Q 016199          321 MVVRYLGMPPM-GKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAI-KIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       321 ~~~~~~~~~~~-~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~-~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                             .... ....+.|..+|. +++.+..+..... ...... +++..|++++.....|..+++++
T Consensus       372 -------~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          372 -------GYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ-PTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -------CTTSCCSSCCEEEEEETTTTEEEEEEECSSS-EEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             -------ccccccccceEEEEEECCCCcEEEEecCCCC-CceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                   0000 111246888886 5677776665331 112222 34567888876678888888754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.35  E-value=2e-10  Score=110.37  Aligned_cols=161  Identities=12%  Similarity=0.154  Sum_probs=107.8

Q ss_pred             eeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeec-cCCccccccccEEEcCC----CcEEEE
Q 016199          120 VHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDE-AEGQKFKLTDGVDVADD----GMIYFT  193 (393)
Q Consensus       120 ~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~-~~g~~~~~~~~l~~d~d----G~l~~t  193 (393)
                      ++.+......|.+|+++++|      +|||++..+.|.+++ ++ .+.+... ........+++|+++++    |.||++
T Consensus        23 ~~~va~~l~~P~~ia~~pdG------~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           23 VEEVVGGLEVPWALAFLPDG------GMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             EEEEECCCSCEEEEEECTTS------CEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             EEEEECCCCCceEEEEcCCC------eEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence            44444434579999999999      999999887799998 66 3333211 11111345789999998    799999


Q ss_pred             eCCCccchhhheehhcccCCCcEEEEEeCCCCe---EEEEec-------CccCCCcEEEcCCCCEEEEEeC---------
Q 016199          194 DASNKYYLREYILDIFEGKPNGRLLSFDPVTKE---TKVLVS-------DLYFANGVVLSPDQTHLVYCET---------  254 (393)
Q Consensus       194 d~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~---~~~~~~-------~l~~~ngi~~s~dg~~l~v~~~---------  254 (393)
                      +....            .....+|++++.+++.   .+.+.+       ..+.++++++++|| .||++..         
T Consensus        96 ~~~~~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~  162 (352)
T 2ism_A           96 RTVAE------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQ  162 (352)
T ss_dssp             EEECT------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGG
T ss_pred             EecCC------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCcccc
Confidence            63210            0012579999876542   222222       24578999999999 7999863         


Q ss_pred             ----CCCeEEEEEecCCCC----------cceeeeeccCCCCCCeEEECC-CCCEEEEEecC
Q 016199          255 ----SMRRCRKFYIKGKNA----------GRVEKFIETLPGLPDNIRYDG-EGHYLIALATE  301 (393)
Q Consensus       255 ----~~~ri~~~~~~g~~~----------~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~~~  301 (393)
                          ..++|+|++.+|.-.          ...+++..++. .|.++++|+ +|++|++....
T Consensus       163 d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~  223 (352)
T 2ism_A          163 DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGP  223 (352)
T ss_dssp             CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC
T ss_pred             CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCC
Confidence                237999999876210          13345543332 489999999 79999998755

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=1e-09  Score=101.72  Aligned_cols=221  Identities=9%  Similarity=-0.001  Sum_probs=145.2

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCC--CceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAY--KGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~--~gl~~i  159 (393)
                      ..+.+++++++|+ +++ +.+++|+.++++++.    +-.+... .....+..+.++|      ++++++..  ..++.+
T Consensus        37 ~~~~~~~~~pdG~-ilv-s~~~~V~~~d~~G~~----~W~~~~~~~~~~~~~~~~~dG------~~lv~~~~~~~~v~~v  104 (276)
T 3no2_A           37 WECNSVAATKAGE-ILF-SYSKGAKMITRDGRE----LWNIAAPAGCEMQTARILPDG------NALVAWCGHPSTILEV  104 (276)
T ss_dssp             CCCCEEEECTTSC-EEE-ECBSEEEEECTTSCE----EEEEECCTTCEEEEEEECTTS------CEEEEEESTTEEEEEE
T ss_pred             CCCcCeEECCCCC-EEE-eCCCCEEEECCCCCE----EEEEcCCCCccccccEECCCC------CEEEEecCCCCEEEEE
Confidence            4678899999998 555 557789999985433    4444321 1346678888999      88888764  348888


Q ss_pred             eCCc--eEEEeeccC-CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199          160 SGNS--TVLLTDEAE-GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF  236 (393)
Q Consensus       160 d~~g--~~~l~~~~~-g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~  236 (393)
                      +++|  +..+..... ..+...+..+.++++|++++++                 ...++|+.||++++.+..+... ..
T Consensus       105 d~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~-----------------~~~~~v~~~d~~G~~~w~~~~~-~~  166 (276)
T 3no2_A          105 NMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL-----------------FATSEVREIAPNGQLLNSVKLS-GT  166 (276)
T ss_dssp             CTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE-----------------TTTTEEEEECTTSCEEEEEECS-SC
T ss_pred             eCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEe-----------------cCCCEEEEECCCCCEEEEEECC-CC
Confidence            9988  222221111 1122346678899999999986                 4467899999985444444332 46


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEec-CCCCcceeeeec-cCC----CCCCeEEECCCCCEEEEEecCcchhhhhhh
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIK-GKNAGRVEKFIE-TLP----GLPDNIRYDGEGHYLIALATEFSTYWDLAY  310 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~-g~~~~~~~~~~~-~l~----g~P~~i~~d~~G~lwva~~~~r~~~~~~~~  310 (393)
                      |.++.+.++|+ +++++...++|..++.+ |+.   ...+.. .++    ..|.++++.++|+++|+...++..-     
T Consensus       167 ~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~---~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~-----  237 (276)
T 3no2_A          167 PFSSAFLDNGD-CLVACGDAHCFVQLNLESNRI---VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE-----  237 (276)
T ss_dssp             CCEEEECTTSC-EEEECBTTSEEEEECTTTCCE---EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT-----
T ss_pred             ccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcE---EEEecCCCCCCccccccccceEcCCCCEEEEeccCcccc-----
Confidence            78889999885 66777778899999976 431   111211 112    2378899999999999986432100     


Q ss_pred             cCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEE
Q 016199          311 RYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISS  361 (393)
Q Consensus       311 ~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~  361 (393)
                                         -.......+++++++|+++..|.+.. +..++.
T Consensus       238 -------------------~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~  270 (276)
T 3no2_A          238 -------------------AGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST  270 (276)
T ss_dssp             -------------------GGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred             -------------------ccccCCceEEEECCCCCEEEEecCcccccceee
Confidence                               00001135999999999999998754 444443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.32  E-value=1.8e-10  Score=105.94  Aligned_cols=196  Identities=9%  Similarity=0.107  Sum_probs=131.5

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeC---CCceEEEeCCceEEEee-ccCCccccccccEEEcCCCcEEEEeCCCccchhhh
Q 016199          129 RPLGIAFANSDPDADRITMIVADA---YKGLLKISGNSTVLLTD-EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREY  204 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~---~~gl~~id~~g~~~l~~-~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~  204 (393)
                      .|.||+++++|      +||+++.   ...|..+|....+++.. ..+..  .+..+++++ ++.||+++          
T Consensus        22 f~~Gl~~~~dg------~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--~fgeGi~~~-g~~lyv~t----------   82 (266)
T 2iwa_A           22 FTQGLVYAEND------TLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--YFGEGLTLL-NEKLYQVV----------   82 (266)
T ss_dssp             CEEEEEECSTT------EEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--CCEEEEEEE-TTEEEEEE----------
T ss_pred             CcccEEEeCCC------eEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--cceEEEEEe-CCEEEEEE----------
Confidence            47999999989      9999975   24589999865122211 12221  345577776 35899996          


Q ss_pred             eehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeeccCC-C
Q 016199          205 ILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA-GRVEKFIETLP-G  281 (393)
Q Consensus       205 ~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~-~~~~~~~~~l~-g  281 (393)
                             ...+.++.||+++.+... +.-+  .+.|..+++||+.+|+++ ..++|+.+|.++.+. ....+-....| .
T Consensus        83 -------~~~~~v~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           83 -------WLKNIGFIYDRRTLSNIKNFTHQ--MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             -------TTCSEEEEEETTTTEEEEEEECC--SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             -------ecCCEEEEEECCCCcEEEEEECC--CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence                   345689999998876543 2222  467888889999999998 688999999764321 11111110111 2


Q ss_pred             CCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC-----
Q 016199          282 LPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE-----  355 (393)
Q Consensus       282 ~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~-----  355 (393)
                      .|+++.+. +|.+|++.+..                                  +.|.++|+ .|+++..+..+.     
T Consensus       153 ~~nele~~-dg~lyvn~~~~----------------------------------~~V~vID~~tg~V~~~I~~~g~~~~~  197 (266)
T 2iwa_A          153 RLNELEYI-NGEVWANIWQT----------------------------------DCIARISAKDGTLLGWILLPNLRKKL  197 (266)
T ss_dssp             CEEEEEEE-TTEEEEEETTS----------------------------------SEEEEEETTTCCEEEEEECHHHHHHH
T ss_pred             cceeEEEE-CCEEEEecCCC----------------------------------CeEEEEECCCCcEEEEEECCCccccc
Confidence            46777776 78999887644                                  56999998 688888876431     


Q ss_pred             -------CCccEE-EEE-eCCEEEEEecCCCeEEEEeCCCCC
Q 016199          356 -------MSLISS-AIK-IGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       356 -------~~~~~~-~~~-~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                             ...... +.. ++++||+++-..+.+..+++.+.+
T Consensus       198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          198 IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             ccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence                   011122 223 457999999999999999987654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.31  E-value=2e-10  Score=107.79  Aligned_cols=194  Identities=12%  Similarity=0.164  Sum_probs=129.4

Q ss_pred             CCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhh
Q 016199          127 GGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREY  204 (393)
Q Consensus       127 ~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~  204 (393)
                      +..|.+++++++|      +||+++. .+.|+++++++ ...... ..    ..+++|+++++|++|+++...       
T Consensus        31 ~~~pegia~~~~g------~lyv~d~~~~~I~~~d~~g~~~~~~~-~~----~~p~gia~~~dG~l~vad~~~-------   92 (306)
T 2p4o_A           31 NTFLENLASAPDG------TIFVTNHEVGEIVSITPDGNQQIHAT-VE----GKVSGLAFTSNGDLVATGWNA-------   92 (306)
T ss_dssp             TCCEEEEEECTTS------CEEEEETTTTEEEEECTTCCEEEEEE-CS----SEEEEEEECTTSCEEEEEECT-------
T ss_pred             CCCcceEEECCCC------CEEEEeCCCCeEEEECCCCceEEEEe-CC----CCceeEEEcCCCcEEEEeccC-------
Confidence            4579999999999      9999985 45699999988 332221 12    247899999999999997321       


Q ss_pred             eehhcccCCCcEEEEEeCCCCeEEEEec--CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCccee---------
Q 016199          205 ILDIFEGKPNGRLLSFDPVTKETKVLVS--DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVE---------  273 (393)
Q Consensus       205 ~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~---------  273 (393)
                              ...+|+++|+.+++++.+..  ...+++|+++.+++ .+|+++...++|++++..+.+ ++..         
T Consensus        93 --------~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~-~~v~~~~~~~~~~  162 (306)
T 2p4o_A           93 --------DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARS  162 (306)
T ss_dssp             --------TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCS
T ss_pred             --------CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCc-EeEEEECCccccc
Confidence                    12369999988888776543  45678999987665 799999888999999975311 1110         


Q ss_pred             eeeccCCCCCCeEEECCCC-CEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC--CcE--E
Q 016199          274 KFIETLPGLPDNIRYDGEG-HYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD--GKP--I  348 (393)
Q Consensus       274 ~~~~~l~g~P~~i~~d~~G-~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~--g~~--~  348 (393)
                      .....+ ..|++|  +++| .+|++....                                  +.|.+|+.+  |+.  .
T Consensus       163 ~~~~~~-~~pngi--s~dg~~lyv~d~~~----------------------------------~~I~~~~~~~~g~~~~~  205 (306)
T 2p4o_A          163 NSESVF-PAANGL--KRFGNFLYVSNTEK----------------------------------MLLLRIPVDSTDKPGEP  205 (306)
T ss_dssp             STTCCS-CSEEEE--EEETTEEEEEETTT----------------------------------TEEEEEEBCTTSCBCCC
T ss_pred             cccCCC-CcCCCc--CcCCCEEEEEeCCC----------------------------------CEEEEEEeCCCCCCCcc
Confidence            001112 257888  4555 588887643                                  457888765  332  1


Q ss_pred             EEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          349 AHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       349 ~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                      +.+...... -......+|+||++...++.|.+++.+.
T Consensus       206 ~~~~~~~~P-~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          206 EIFVEQTNI-DDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             EEEEESCCC-SSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             EEEeccCCC-CCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence            222211111 1233445789999998899999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.31  E-value=1.4e-10  Score=109.92  Aligned_cols=178  Identities=14%  Similarity=0.148  Sum_probs=123.4

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-----CCceeeeEECCCCCCCCceEEEEEeCC----
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-----GGRPLGIAFANSDPDADRITMIVADAY----  153 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-----~~~p~gl~~d~~G~~~~~~~L~v~~~~----  153 (393)
                      ..|.+++++++|+ +|+++. .+|++++++++.    .+.+...     ..++.++++|++|      ++|+++..    
T Consensus        90 ~~v~~i~~~~dg~-l~v~~~-~gl~~~d~~~g~----~~~~~~~~~~~~~~~~~~i~~d~~G------~l~v~~~~~~~~  157 (326)
T 2ghs_A           90 FMGSALAKISDSK-QLIASD-DGLFLRDTATGV----LTLHAELESDLPGNRSNDGRMHPSG------ALWIGTMGRKAE  157 (326)
T ss_dssp             SCEEEEEEEETTE-EEEEET-TEEEEEETTTCC----EEEEECSSTTCTTEEEEEEEECTTS------CEEEEEEETTCC
T ss_pred             CcceEEEEeCCCe-EEEEEC-CCEEEEECCCCc----EEEEeeCCCCCCCCCCCCEEECCCC------CEEEEeCCCcCC
Confidence            4577899999986 888874 469999987765    5444322     1357899999999      99999752    


Q ss_pred             ---CceEEEeCCc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCC--CC-
Q 016199          154 ---KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV--TK-  225 (393)
Q Consensus       154 ---~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~--t~-  225 (393)
                         .+|++++ ++ .+.+..     ....++++++++|| .+|+++                 +..++|++||.+  ++ 
T Consensus       158 ~~~~~l~~~~-~g~~~~~~~-----~~~~~~~i~~s~dg~~lyv~~-----------------~~~~~I~~~d~~~~~Gl  214 (326)
T 2ghs_A          158 TGAGSIYHVA-KGKVTKLFA-----DISIPNSICFSPDGTTGYFVD-----------------TKVNRLMRVPLDARTGL  214 (326)
T ss_dssp             TTCEEEEEEE-TTEEEEEEE-----EESSEEEEEECTTSCEEEEEE-----------------TTTCEEEEEEBCTTTCC
T ss_pred             CCceEEEEEe-CCcEEEeeC-----CCcccCCeEEcCCCCEEEEEE-----------------CCCCEEEEEEcccccCC
Confidence               4799999 66 433321     12346799999999 589987                 334689999864  55 


Q ss_pred             eE---EEEe---cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCeEEEC-CCCC-EEE
Q 016199          226 ET---KVLV---SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYD-GEGH-YLI  296 (393)
Q Consensus       226 ~~---~~~~---~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d-~~G~-lwv  296 (393)
                      ++   +.+.   .....|++++++++| .+|++....++|.+|+.+++.   ...+.  .+ ..|.+++++ ++++ +||
T Consensus       215 ~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~---~~~i~--~~~~~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          215 PTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNH---IARYE--VPGKQTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             BSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCE---EEEEE--CSCSBEEEEEEESTTSCEEEE
T ss_pred             cccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCE---EEEEE--CCCCCcEEEEEecCCCCEEEE
Confidence            32   2222   123568999999999 589988777899999875431   22221  23 247788887 6754 889


Q ss_pred             EEecC
Q 016199          297 ALATE  301 (393)
Q Consensus       297 a~~~~  301 (393)
                      ++...
T Consensus       289 t~~~~  293 (326)
T 2ghs_A          289 TSARE  293 (326)
T ss_dssp             EEBCT
T ss_pred             EecCC
Confidence            87644

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.31  E-value=1.4e-09  Score=110.52  Aligned_cols=242  Identities=12%  Similarity=0.137  Sum_probs=156.8

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEc--CCCCCcceeeeeecCCCceeeeEECC----CCCCCCceEEEEEeC-CCceE
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTL--NDSPADSLVHNWINTGGRPLGIAFAN----SDPDADRITMIVADA-YKGLL  157 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~--~~~~~~~~~~~~~~~~~~p~gl~~d~----~G~~~~~~~L~v~~~-~~gl~  157 (393)
                      |.+++++++|++||+++.++.|..|+.  .+.+   ....+ ..+..|.++++++    +|     +.+|+++. ...|.
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---~~~~i-~~g~~p~~va~sp~~~~dg-----~~l~v~~~~~~~v~  251 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---KVAEI-KIGIEARSVESSKFKGYED-----RYTIAGAYWPPQFA  251 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---EEEEE-ECCSEEEEEEECCSTTCTT-----TEEEEEEEESSEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCc---EEEEE-ecCCCcceEEeCCCcCCCC-----CEEEEEEccCCeEE
Confidence            788999999999999999999999999  4433   13333 3467899999999    88     36888875 45677


Q ss_pred             EEeCCc---eEEEeec---cCC---ccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          158 KISGNS---TVLLTDE---AEG---QKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       158 ~id~~g---~~~l~~~---~~g---~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      .+|.+.   ...+...   ..+   .+-..+.++.+++++ .+|++.                 ...+.|+.+|..+.+.
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-----------------~~~g~i~vvd~~~~~~  314 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-----------------KETGKVLLVNYKDIDN  314 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-----------------TTTTEEEEEECTTSSS
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-----------------CCCCeEEEEEecCCCc
Confidence            888655   2222210   111   011235678899877 555654                 3457899999865432


Q ss_pred             ---EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCC-CeEE-ECCC-CCEEEEEe
Q 016199          228 ---KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLP-DNIR-YDGE-GHYLIALA  299 (393)
Q Consensus       228 ---~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P-~~i~-~d~~-G~lwva~~  299 (393)
                         ..+ ..-.++.+++++|||+++|++....+.|..+|.+.   ++....++.  .| .| .+.. .+++ |.+|++..
T Consensus       315 l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~  389 (543)
T 1nir_A          315 LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSH  389 (543)
T ss_dssp             CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSB-CCTTCEEEEETTTEEEEEEEB
T ss_pred             ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccCCCC-CCCCCcccCCCCCccEEEecc
Confidence               122 23467999999999999999998889999999753   222222211  11 22 2443 3666 77888764


Q ss_pred             cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC--------CcEEEEeeCCC-CCccEEEEEeCCEEE
Q 016199          300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD--------GKPIAHYYDPE-MSLISSAIKIGDHLY  370 (393)
Q Consensus       300 ~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~--------g~~~~~~~d~~-~~~~~~~~~~~g~Ly  370 (393)
                      .+.                                 +.|..+|.+        +++++.+..+. ........+++.+||
T Consensus       390 ~~d---------------------------------~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~  436 (543)
T 1nir_A          390 LGD---------------------------------GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY  436 (543)
T ss_dssp             SSS---------------------------------SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEE
T ss_pred             CCC---------------------------------ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEE
Confidence            221                                 245555542        67888887543 212222345668999


Q ss_pred             EEec-C-----CCeEEEEeCCCCCCC
Q 016199          371 CGSV-H-----HRGILHLDVNQHPAR  390 (393)
Q Consensus       371 igs~-~-----~~~i~~~~~~~~~~~  390 (393)
                      +++. +     ++.|..+|++.....
T Consensus       437 v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          437 VDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             EecCCCCCcccCceEEEEECCCCCCC
Confidence            9963 2     459999998866544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.30  E-value=7.7e-10  Score=106.40  Aligned_cols=163  Identities=13%  Similarity=0.104  Sum_probs=107.6

Q ss_pred             eeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeec-cCCccccccccEEEcCC----CcEEEEeC
Q 016199          121 HNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDE-AEGQKFKLTDGVDVADD----GMIYFTDA  195 (393)
Q Consensus       121 ~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~-~~g~~~~~~~~l~~d~d----G~l~~td~  195 (393)
                      +.+......|.+|+++++|      +|||++..+.|.+++.+|.+.+... ........+.+|+++++    |.||+++.
T Consensus        22 ~~va~~l~~P~~ia~~pdG------~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           22 SEVASDLEVPWSIAPLGGG------RYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             EEEECSCSCEEEEEEEETT------EEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEEeCCCCCCeEEEEcCCC------eEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            3333334579999999999      9999998877999987764222211 11111234779999997    79999963


Q ss_pred             C-CccchhhheehhcccCCCcEEEEEeCCCC-----eEEEEec-----CccCCCcEEEcCCCCEEEEEeC----------
Q 016199          196 S-NKYYLREYILDIFEGKPNGRLLSFDPVTK-----ETKVLVS-----DLYFANGVVLSPDQTHLVYCET----------  254 (393)
Q Consensus       196 ~-~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-----~~~~~~~-----~l~~~ngi~~s~dg~~l~v~~~----------  254 (393)
                      . ..           .+....+|++++.+.+     ..+.+.+     ..+.++++++++|| .||++..          
T Consensus        96 ~~~~-----------~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d  163 (354)
T 3a9g_A           96 YFAE-----------GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQD  163 (354)
T ss_dssp             EECG-----------GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTC
T ss_pred             ccCC-----------CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccC
Confidence            2 00           0011257999987654     1222322     24578999999999 5999853          


Q ss_pred             ---CCCeEEEEEecCCC-----CcceeeeeccCCCCCCeEEECC-CCCEEEEEecCc
Q 016199          255 ---SMRRCRKFYIKGKN-----AGRVEKFIETLPGLPDNIRYDG-EGHYLIALATEF  302 (393)
Q Consensus       255 ---~~~ri~~~~~~g~~-----~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~~~r  302 (393)
                         ..++|+|++.+|.-     ....+++...+- .|.++++|+ +|++|++....+
T Consensus       164 ~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~  219 (354)
T 3a9g_A          164 LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPV  219 (354)
T ss_dssp             TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSS
T ss_pred             CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCC
Confidence               24689999987641     012355554433 589999999 799999987653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.30  E-value=1.8e-09  Score=98.61  Aligned_cols=194  Identities=14%  Similarity=0.165  Sum_probs=127.4

Q ss_pred             cCccCCCceEEEecCCCEEEE-EecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCC-Cc
Q 016199           79 YGVLKGPEDLLYDAHSKLIYT-GCEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAY-KG  155 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~-~~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~g  155 (393)
                      .|....+.++++++++++||+ ...+++|++++.++..    ...+.- ....+.||+.+++|      .+||++.. +.
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v----~~~i~l~g~~D~EGIa~~~~g------~~~vs~E~~~~   92 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDL----IRTIPLDFVKDLETIEYIGDN------QFVISDERDYA   92 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCE----EEEEECSSCSSEEEEEECSTT------EEEEEETTTTE
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCE----EEEEecCCCCChHHeEEeCCC------EEEEEECCCCc
Confidence            344467888999998888997 5567899999998442    344422 23579999999999      99898643 45


Q ss_pred             eEEEe--CCc-eEEEee-ccC---CccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEe--CCCC
Q 016199          156 LLKIS--GNS-TVLLTD-EAE---GQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFD--PVTK  225 (393)
Q Consensus       156 l~~id--~~g-~~~l~~-~~~---g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d--~~t~  225 (393)
                      ++.++  .++ ...+.. ...   ........+|++|+++ +||++.               | ....+||.++  +.+.
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~---------------E-~~p~~i~~~~g~~~~~  156 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK---------------E-KNPIEVYKVNGLLSSN  156 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE---------------E-SSSEEEEEEESTTCSS
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE---------------C-cCCceEEEEcccccCC
Confidence            66664  344 222211 111   1112235799999977 899984               2 2234789998  2223


Q ss_pred             eEEEEec-------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC------CCCCeEEECCCC
Q 016199          226 ETKVLVS-------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP------GLPDNIRYDGEG  292 (393)
Q Consensus       226 ~~~~~~~-------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~------g~P~~i~~d~~G  292 (393)
                      .++...+       .+.-+.+++++|....+|+......+|..++.+|... ....+.....      ..|.||++|++|
T Consensus       157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~-~~~~L~~g~~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI-GEMSLTKGSRGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred             ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE-EEEEcCCccCCcccccCCCCeeEECCCC
Confidence            3343311       2345789999999889999998899999999876421 1111211111      268999999999


Q ss_pred             CEEEEEe
Q 016199          293 HYLIALA  299 (393)
Q Consensus       293 ~lwva~~  299 (393)
                      ++||+.-
T Consensus       236 ~lyIvsE  242 (255)
T 3qqz_A          236 NIYIVSE  242 (255)
T ss_dssp             CEEEEET
T ss_pred             CEEEEcC
Confidence            9999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.29  E-value=4e-10  Score=109.77  Aligned_cols=234  Identities=13%  Similarity=0.095  Sum_probs=151.1

Q ss_pred             CCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeee------cCCCceeeeEECCCCCCCCceEEEEEeCC-C
Q 016199           83 KGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWI------NTGGRPLGIAFANSDPDADRITMIVADAY-K  154 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~------~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~  154 (393)
                      ..|.++++++++. ++++. .++.|..|+.+++.    .....      ...+...++++.++|      ++|++... +
T Consensus       123 ~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~s~~~d~  191 (433)
T 3bws_A          123 FQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQ----TVRLSPPEKYKKKLGFVETISIPEHN------ELWVSQMQAN  191 (433)
T ss_dssp             SCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCC----EEEECCCHHHHTTCCEEEEEEEGGGT------EEEEEEGGGT
T ss_pred             CCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCe----EeeecCcccccccCCceeEEEEcCCC------EEEEEECCCC
Confidence            3567899999654 65554 46789999988765    33221      123456789999999      88888664 4


Q ss_pred             ceEEEeCCc---eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          155 GLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       155 gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                      .|..+|.++   ...+.  ..   ...+..++++++|. +|++.                 ...+.|..||..+++....
T Consensus       192 ~v~~~d~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~l~~~~-----------------~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          192 AVHVFDLKTLAYKATVD--LT---GKWSKILLYDPIRDLVYCSN-----------------WISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             EEEEEETTTCCEEEEEE--CS---SSSEEEEEEETTTTEEEEEE-----------------TTTTEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCceEEEEEc--CC---CCCeeEEEEcCCCCEEEEEe-----------------cCCCcEEEEECCCCcEEEE
Confidence            577788655   22221  11   13467899999985 55664                 2356899999988876555


Q ss_pred             ecCccCCCcEEEcCCCCEEEEEeC-------CCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCc
Q 016199          231 VSDLYFANGVVLSPDQTHLVYCET-------SMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEF  302 (393)
Q Consensus       231 ~~~l~~~ngi~~s~dg~~l~v~~~-------~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r  302 (393)
                      ......+.++++++||+.++++..       ..+.|..|++.+.   +..... ..++.+.+++++++|+ +|++.... 
T Consensus       250 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~-  324 (433)
T 3bws_A          250 TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCC-  324 (433)
T ss_dssp             CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EEEEEE-EEEECEEEEEECSSTTEEEEEETTT-
T ss_pred             ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cEEeec-cCCCCcceEEECCCCCEEEEEecCC-
Confidence            444455889999999999988874       3568999998533   221122 1233577899999996 66664433 


Q ss_pred             chhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEE-EeCCEEEEEecCCC---
Q 016199          303 STYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAI-KIGDHLYCGSVHHR---  377 (393)
Q Consensus       303 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~-~~~g~Lyigs~~~~---  377 (393)
                                                       +.|..+|.+ ++.+..+..... ...... +++..||+++...+   
T Consensus       325 ---------------------------------~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~  370 (433)
T 3bws_A          325 ---------------------------------SKIEVYDLKEKKVQKSIPVFDK-PNTIALSPDGKYLYVSCRGPNHPT  370 (433)
T ss_dssp             ---------------------------------TEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEECCCCCTT
T ss_pred             ---------------------------------CEEEEEECCCCcEEEEecCCCC-CCeEEEcCCCCEEEEEecCCCccc
Confidence                                             457778764 566666653221 112222 23457888876543   


Q ss_pred             -----------eEEEEeCCCCC
Q 016199          378 -----------GILHLDVNQHP  388 (393)
Q Consensus       378 -----------~i~~~~~~~~~  388 (393)
                                 .|..+|++...
T Consensus       371 ~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          371 EGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             TCTTSCCSSCCEEEEEETTTTE
T ss_pred             cccccccccceEEEEEECCCCc
Confidence                       78888876543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.26  E-value=1.5e-09  Score=99.74  Aligned_cols=188  Identities=14%  Similarity=0.138  Sum_probs=124.1

Q ss_pred             CceEEecCccCCCceEEEecCCCEEEEEec---CCeEEEEEcCCCCCcceeeeeecCCC--ceeeeEECCCCCCCCceEE
Q 016199           73 GSEKVGYGVLKGPEDLLYDAHSKLIYTGCE---DGWIKRVTLNDSPADSLVHNWINTGG--RPLGIAFANSDPDADRITM  147 (393)
Q Consensus        73 ~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~---~g~I~~~~~~~~~~~~~~~~~~~~~~--~p~gl~~d~~G~~~~~~~L  147 (393)
                      -...+..+.-..|.+++++++| +||+++.   ++.|..+|+.+++    +......+.  .+.|++++ .+      +|
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~----v~~~i~l~~~~fgeGi~~~-g~------~l   78 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGK----VENIHKMDDSYFGEGLTLL-NE------KL   78 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCC----EEEEEECCTTCCEEEEEEE-TT------EE
T ss_pred             EEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCC----EEEEEecCCCcceEEEEEe-CC------EE
Confidence            3445555554578999999986 6999874   4689999998876    444333333  34577776 35      89


Q ss_pred             EEEeCCCc-eEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC
Q 016199          148 IVADAYKG-LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK  225 (393)
Q Consensus       148 ~v~~~~~g-l~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~  225 (393)
                      |+++...+ +..+|++..+++..-.-+    .+.+..+.+|| ++|+++                  +++.|+.+|+++.
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g----~~~g~glt~Dg~~l~vs~------------------gs~~l~viD~~t~  136 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ----MKDGWGLATDGKILYGSD------------------GTSILYEIDPHTF  136 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECC----SSSCCEEEECSSSEEEEC------------------SSSEEEEECTTTC
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECC----CCCeEEEEECCCEEEEEC------------------CCCeEEEEECCCC
Confidence            99988554 788898763333221111    12233444555 899985                  2468999999986


Q ss_pred             eEEE-Eec-----CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cC---------C--CCCCeE
Q 016199          226 ETKV-LVS-----DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE--TL---------P--GLPDNI  286 (393)
Q Consensus       226 ~~~~-~~~-----~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~--~l---------~--g~P~~i  286 (393)
                      +... +.-     ...++|++.+. || .+|++....+.|.++|++..   +....++  .+         +  ..|+||
T Consensus       137 ~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGI  211 (266)
T 2iwa_A          137 KLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGI  211 (266)
T ss_dssp             CEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEE
T ss_pred             cEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEE
Confidence            6433 221     23468899888 77 79999988899999998532   2222221  11         1  257899


Q ss_pred             EECCCCC-EEEEEe
Q 016199          287 RYDGEGH-YLIALA  299 (393)
Q Consensus       287 ~~d~~G~-lwva~~  299 (393)
                      +++++|+ +||+..
T Consensus       212 a~~~~~~~lfVTgk  225 (266)
T 2iwa_A          212 AWDQENKRIFVTGK  225 (266)
T ss_dssp             EEETTTTEEEEEET
T ss_pred             EEcCCCCEEEEECC
Confidence            9999976 778764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.24  E-value=1.3e-08  Score=97.00  Aligned_cols=191  Identities=16%  Similarity=0.095  Sum_probs=117.0

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCccee-eeeecC----------CCceeeeEECCCCCCCCceEEEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLV-HNWINT----------GGRPLGIAFANSDPDADRITMIVA  150 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~-~~~~~~----------~~~p~gl~~d~~G~~~~~~~L~v~  150 (393)
                      ..|..+++  +|+.||++.. ++.|..|+.+........ ......          ...+++++++++|     +.+|++
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-----~~l~~~  172 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-----KYLLAD  172 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-----SEEEEE
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-----CEEEEE
Confidence            56878888  6778888875 678888887642210001 111111          1235789999999     248888


Q ss_pred             eCCC-ceEEEeCC--ce----E-E-Ee---eccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEE
Q 016199          151 DAYK-GLLKISGN--ST----V-L-LT---DEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRL  217 (393)
Q Consensus       151 ~~~~-gl~~id~~--g~----~-~-l~---~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l  217 (393)
                      +... .+..++.+  +.    + . ..   ..........+.++++++||+ +|+++                 ...+.|
T Consensus       173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-----------------~~~~~v  235 (361)
T 3scy_A          173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN-----------------EIGGTV  235 (361)
T ss_dssp             ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-----------------TTTCEE
T ss_pred             eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc-----------------CCCCeE
Confidence            7643 35555432  21    1 1 00   000111123467899999995 78875                 234567


Q ss_pred             EEEeCCCCeEEEEec------CccCCCcEEEcCCCCEEEEEeCC-CCeEEEEEecCCCCcceeee--eccCCCCCCeEEE
Q 016199          218 LSFDPVTKETKVLVS------DLYFANGVVLSPDQTHLVYCETS-MRRCRKFYIKGKNAGRVEKF--IETLPGLPDNIRY  288 (393)
Q Consensus       218 ~~~d~~t~~~~~~~~------~l~~~ngi~~s~dg~~l~v~~~~-~~ri~~~~~~g~~~~~~~~~--~~~l~g~P~~i~~  288 (393)
                      ..|+..+++.+.+..      +...+.+++++|||++||+++.. .++|..|+++.. .+..+..  ... ...|.++++
T Consensus       236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~~~~~~~~~~-g~~~~~~~~  313 (361)
T 3scy_A          236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-NGTLTKVGYQLT-GIHPRNFII  313 (361)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-TCCEEEEEEEEC-SSCCCEEEE
T ss_pred             EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCcEEEeeEecC-CCCCceEEE
Confidence            788776776644322      12346699999999999999988 789999998621 1222211  112 346899999


Q ss_pred             CCCCC-EEEEEe
Q 016199          289 DGEGH-YLIALA  299 (393)
Q Consensus       289 d~~G~-lwva~~  299 (393)
                      +++|+ +|++..
T Consensus       314 spdg~~l~~~~~  325 (361)
T 3scy_A          314 TPNGKYLLVACR  325 (361)
T ss_dssp             CTTSCEEEEEET
T ss_pred             CCCCCEEEEEEC
Confidence            99998 555543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.24  E-value=8e-10  Score=108.57  Aligned_cols=249  Identities=12%  Similarity=0.019  Sum_probs=144.1

Q ss_pred             cCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC----------CCce
Q 016199           92 AHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA----------YKGL  156 (393)
Q Consensus        92 ~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~----------~~gl  156 (393)
                      ++++++|+....     +.|..+|..+.+    +......+..| ++++++||     +.+||++.          .+.|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~----vv~~I~vG~~P-gia~SpDg-----k~lyVan~~~~~~~~G~~~~~V  151 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGR----ILGMTDGGFLP-HPVAAEDG-----SFFAQASTVFERIARGKRTDYV  151 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTE----EEEEEEECSSC-EEEECTTS-----SCEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCE----EEEEEECCCCC-ceEECCCC-----CEEEEEeccccccccCCCCCEE
Confidence            466789998763     689999998876    44444567789 99999999     36999974          2348


Q ss_pred             EEEeCCceEEEee-ccC-Ccc---ccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          157 LKISGNSTVLLTD-EAE-GQK---FKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       157 ~~id~~g~~~l~~-~~~-g~~---~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                      ..+|....++... ... ...   ...++++++++|| .+|+++..                ..+.|..+|..++++..-
T Consensus       152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~  215 (426)
T 3c75_H          152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRM  215 (426)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEE
T ss_pred             EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEE
Confidence            8899866222211 111 111   2357899999999 79998631                123566666655543211


Q ss_pred             ec--C--ccCCC-----------------------------------------cEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          231 VS--D--LYFAN-----------------------------------------GVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       231 ~~--~--l~~~n-----------------------------------------gi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      ..  +  ...|.                                         .+.+++|++.+|+... .++++.++..
T Consensus       216 I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~  294 (426)
T 3c75_H          216 LDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLT  294 (426)
T ss_dssp             EECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEEC
T ss_pred             EEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEecc
Confidence            10  0  00111                                         1234555555555543 4566676664


Q ss_pred             CCCCcceeeee---c---cCCCCCCe---EEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCC
Q 016199          266 GKNAGRVEKFI---E---TLPGLPDN---IRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSS  335 (393)
Q Consensus       266 g~~~~~~~~~~---~---~l~g~P~~---i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  335 (393)
                      +....-...+.   +   .....|.+   ++++++|+ +||+......                         .-.....
T Consensus       295 ~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~-------------------------gthk~~s  349 (426)
T 3c75_H          295 AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE-------------------------WKHKAAS  349 (426)
T ss_dssp             SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT-------------------------TCTTSCE
T ss_pred             CCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc-------------------------ccccCCC
Confidence            32100000000   0   00012333   78888755 7887642100                         0000011


Q ss_pred             ceEEEECC-CCcEEEEeeCCCCCccEEEEEeCC-EEEEEecCCCeEEEEeCCCCCCCCC
Q 016199          336 SGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGD-HLYCGSVHHRGILHLDVNQHPARAI  392 (393)
Q Consensus       336 ~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g-~Lyigs~~~~~i~~~~~~~~~~~~~  392 (393)
                      +.|..+|. .+++++.+..+.......+..++. +||+++..++.|..+|+.....+++
T Consensus       350 ~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          350 RFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence            45999997 578888887554222223344566 7999988899999999988877665

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.23  E-value=2.3e-09  Score=100.69  Aligned_cols=159  Identities=13%  Similarity=0.038  Sum_probs=94.0

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC--ceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCCc-
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG--RPLGIAFANSDPDADRITMIVADAY-KGLLKISGNS-  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~--~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g-  163 (393)
                      +++.++++.+.++..++.|+.++..+++    .........  .|.+++++++|     +.+|++... ..|..+|.++ 
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~s~dg-----~~~~v~~~~~~~i~~~d~~t~   75 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDT----VYKSCVMPDKFGPGTAMMAPDN-----RTAYVLNNHYGDIYGIDLDTC   75 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE----EEEEEECSSCCSSCEEEECTTS-----SEEEEEETTTTEEEEEETTTT
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCc----EEEEEecCCCCCCceeEECCCC-----CEEEEEeCCCCcEEEEeCCCC
Confidence            4566676544455668899999988764    332223334  68999999998     247888654 4588888765 


Q ss_pred             eEEEeeccCC---ccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE---EEecCccC
Q 016199          164 TVLLTDEAEG---QKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK---VLVSDLYF  236 (393)
Q Consensus       164 ~~~l~~~~~g---~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~---~~~~~l~~  236 (393)
                      ..........   .....++++++++|| .+|+++.........|.      ...+.|+.||..+++..   .....-..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~------~~~~~i~~~d~~~~~~~~~~~~~~~~~~  149 (349)
T 1jmx_B           76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV------VKPPRLEVFSTADGLEAKPVRTFPMPRQ  149 (349)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE------ECCCEEEEEEGGGGGGBCCSEEEECCSS
T ss_pred             cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc------cCCCeEEEEECCCccccceeeeccCCCc
Confidence            2111111111   112347899999999 57776421000000000      01357999998764321   11112234


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +.++++++||+ +|++.   +.|++++++
T Consensus       150 ~~~~~~s~dg~-l~~~~---~~i~~~d~~  174 (349)
T 1jmx_B          150 VYLMRAADDGS-LYVAG---PDIYKMDVK  174 (349)
T ss_dssp             CCCEEECTTSC-EEEES---SSEEEECTT
T ss_pred             ccceeECCCCc-EEEcc---CcEEEEeCC
Confidence            77888999998 88753   348888875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.21  E-value=2.4e-08  Score=96.53  Aligned_cols=257  Identities=9%  Similarity=-0.045  Sum_probs=149.4

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEEec----------CCeEEEEEcCCCCCcceeeeeecC-------CCceeeeEECC
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTGCE----------DGWIKRVTLNDSPADSLVHNWINT-------GGRPLGIAFAN  137 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~----------~g~I~~~~~~~~~~~~~~~~~~~~-------~~~p~gl~~d~  137 (393)
                      ..+..|  .+| ++++++||+.||+...          ++.|..|+..+.+   ....+...       +..|.++++++
T Consensus        61 ~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~---~~~~i~~~~~~~~~~g~~p~~~~~sp  134 (373)
T 2mad_H           61 GHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             EEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc---EEEEEECCCccccccCCCccceEECC
Confidence            344445  468 9999999999999862          4568899987654   12222111       24588999999


Q ss_pred             CCCCCCceEEEEEeCC--CceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCC
Q 016199          138 SDPDADRITMIVADAY--KGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPN  214 (393)
Q Consensus       138 ~G~~~~~~~L~v~~~~--~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~  214 (393)
                      +|     +.||+++..  ..|..+| ++.+.......-     +..+.+.++| +.|++.                 ...
T Consensus       135 DG-----~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----~~~~~~~~~~~~~~~~~-----------------~~d  186 (373)
T 2mad_H          135 NN-----ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----PTCYHIHPGAPSTFYLL-----------------CAQ  186 (373)
T ss_pred             CC-----CEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----CceEEEEeCCCceEEEE-----------------cCC
Confidence            99     378998753  4588899 762222110111     1123444554 566664                 345


Q ss_pred             cEEEEEeCCCCeEEEEec-----CccCC--CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--c----cCCC
Q 016199          215 GRLLSFDPVTKETKVLVS-----DLYFA--NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--E----TLPG  281 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~~-----~l~~~--ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~----~l~g  281 (393)
                      |.+..+|. +++......     .-..|  ....+.+++..+|+.. ..+.++.+++.+........+.  .    ....
T Consensus       187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~  264 (373)
T 2mad_H          187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTW  264 (373)
T ss_pred             CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence            67888888 555432111     00011  2234556665665555 4678999988543211111110  0    0111


Q ss_pred             CCCe---EEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCC
Q 016199          282 LPDN---IRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEM  356 (393)
Q Consensus       282 ~P~~---i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~  356 (393)
                      .|.+   ++++++|+ +|++......                         .......+.|..+|.+ ++++..+..+..
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~-------------------------~~~~~~~~~V~VID~~t~~vv~~i~~g~~  319 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSA-------------------------WKLHAAAKEVTSVTGLVGQTSSQISLGHD  319 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCc-------------------------ccccCCCCeEEEEECCCCEEEEEEECCCC
Confidence            3666   78888866 8887652100                         0000012469999975 677788876543


Q ss_pred             CccEEEEEeCC-EEEEEecCCCeEEEEeCCCCCCCCC
Q 016199          357 SLISSAIKIGD-HLYCGSVHHRGILHLDVNQHPARAI  392 (393)
Q Consensus       357 ~~~~~~~~~~g-~Lyigs~~~~~i~~~~~~~~~~~~~  392 (393)
                      .....+.+++. .||+++..++.|..+|.+....+++
T Consensus       320 p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             cCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            32233344556 6888877789999999988777765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.19  E-value=5.6e-09  Score=98.06  Aligned_cols=195  Identities=16%  Similarity=0.116  Sum_probs=109.9

Q ss_pred             CCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCC-------CceeeeEECCCCCCCCceEEEEEeCC--
Q 016199           84 GPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTG-------GRPLGIAFANSDPDADRITMIVADAY--  153 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~-------~~p~gl~~d~~G~~~~~~~L~v~~~~--  153 (393)
                      .|.+++++++|+.+|++.. ++.|+.++.++++    ........       ..|.+++++++|     +.||++...  
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~----~~~~~~~~~~~~~~~~~~~~~~~spdg-----~~l~~~~~~~~  114 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK----NTFHANLSSVPGEVGRSMYSFAISPDG-----KEVYATVNPTQ  114 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEEESCCSTTEEEECSSCEEECTTS-----SEEEEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc----EEEEEEcccccccccccccceEECCCC-----CEEEEEccccc
Confidence            6899999999988887764 7899999988654    33222222       237899999998     357777633  


Q ss_pred             ----------CceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCc-cchhh--heehhcccC-----
Q 016199          154 ----------KGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNK-YYLRE--YILDIFEGK-----  212 (393)
Q Consensus       154 ----------~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~-~~~~~--~~~~~~e~~-----  212 (393)
                                ..|..+|.++   .+.+. .....  ..+.++++++||++|+++..-. +....  ....+-.+.     
T Consensus       115 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~--~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  191 (349)
T 1jmx_B          115 RLNDHYVVKPPRLEVFSTADGLEAKPVR-TFPMP--RQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG  191 (349)
T ss_dssp             ECSSCEEECCCEEEEEEGGGGGGBCCSE-EEECC--SSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTT
T ss_pred             ccccccccCCCeEEEEECCCccccceee-eccCC--CcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCcc
Confidence                      5577787643   11111 11111  2366888999999887631100 00000  000000000     


Q ss_pred             ---------------------------------------CCcEEEEEeCCCCeEEEEec--CccCCCcEEEcC-CCCEEE
Q 016199          213 ---------------------------------------PNGRLLSFDPVTKETKVLVS--DLYFANGVVLSP-DQTHLV  250 (393)
Q Consensus       213 ---------------------------------------~~g~l~~~d~~t~~~~~~~~--~l~~~ngi~~s~-dg~~l~  250 (393)
                                                             ....++.+|..+++++.+..  ....+.++++++ ||+.+|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~  271 (349)
T 1jmx_B          192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY  271 (349)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred             ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE
Confidence                                                   00011123333333322211  112456778889 999998


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEE
Q 016199          251 YCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIA  297 (393)
Q Consensus       251 v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva  297 (393)
                      ++   .++|.+|+++..   +..... ..+..|.+++++++|+ +|++
T Consensus       272 ~~---~~~v~~~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          272 GV---LNRLAKYDLKQR---KLIKAA-NLDHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             EE---ESEEEEEETTTT---EEEEEE-ECSSCCCEEEECSSSSCEEEE
T ss_pred             EE---cCeEEEEECccC---eEEEEE-cCCCCccceEECCCCCEEEEe
Confidence            88   679999998532   222222 1334588999999987 6664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.18  E-value=2.2e-08  Score=102.13  Aligned_cols=242  Identities=12%  Similarity=0.090  Sum_probs=153.3

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcC--CCCCcceeeeeecCCCceeeeEEC----CCCCCCCceEEEEEeCC-Cc
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLN--DSPADSLVHNWINTGGRPLGIAFA----NSDPDADRITMIVADAY-KG  155 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~p~gl~~d----~~G~~~~~~~L~v~~~~-~g  155 (393)
                      ..|+++++++||+++|+++.++.|..||..  +.+   .+..+ ..+..|.+++++    ++|     +.+|+++.. ..
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~---~v~~i-~~G~~P~~ia~s~~~~pDG-----k~l~v~n~~~~~  267 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT---TVAEI-KIGSEARSIETSKMEGWED-----KYAIAGAYWPPQ  267 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---EEEEE-ECCSEEEEEEECCSTTCTT-----TEEEEEEEETTE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---EeEEE-ecCCCCceeEEccccCCCC-----CEEEEEEccCCe
Confidence            468899999999999999999999999985  333   13333 446789999999    588     378998764 45


Q ss_pred             eEEEeCCceEE---Eeec---cCCc---cccccccEEEcCCCcE-EEEeCCCccchhhheehhcccCCCcEEEEEeCCCC
Q 016199          156 LLKISGNSTVL---LTDE---AEGQ---KFKLTDGVDVADDGMI-YFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK  225 (393)
Q Consensus       156 l~~id~~g~~~---l~~~---~~g~---~~~~~~~l~~d~dG~l-~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~  225 (393)
                      +..+|....+.   +...   .++.   +...+.++...+++.. ++..                 ..+|.|+.+|..+.
T Consensus       268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----------------~~~g~v~~vd~~~~  330 (567)
T 1qks_A          268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----------------KETGKILLVDYTDL  330 (567)
T ss_dssp             EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----------------TTTTEEEEEETTCS
T ss_pred             EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----------------cCCCeEEEEecCCC
Confidence            77888665222   2111   1110   1112345666776644 4442                 34678999987654


Q ss_pred             eEEE--EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec---cCCCCC-CeEE-ECCC-CCEEEE
Q 016199          226 ETKV--LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE---TLPGLP-DNIR-YDGE-GHYLIA  297 (393)
Q Consensus       226 ~~~~--~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~---~l~g~P-~~i~-~d~~-G~lwva  297 (393)
                      +...  ....-.+++++.+++||+++|++....++|..+|.+..   +....++   ..| .| .+.. ++++ |.+|++
T Consensus       331 ~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~P-hpg~g~~~~~p~~g~v~~t  406 (567)
T 1qks_A          331 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTP-HPGRGANFVHPTFGPVWAT  406 (567)
T ss_dssp             SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSB-CCTTCEEEEETTTEEEEEE
T ss_pred             ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCC-CCccceeeECCCCCcEEEe
Confidence            2111  12234578899999999999999998999999998533   2222221   112 23 3554 4776 669987


Q ss_pred             EecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC--------CcEEEEeeCCC-CCccEEEEEeCCE
Q 016199          298 LATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD--------GKPIAHYYDPE-MSLISSAIKIGDH  368 (393)
Q Consensus       298 ~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~--------g~~~~~~~d~~-~~~~~~~~~~~g~  368 (393)
                      ...+.                                 +.|..+|.+        -++++.+.... ........+++.+
T Consensus       407 ~~~g~---------------------------------~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~  453 (567)
T 1qks_A          407 SHMGD---------------------------------DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY  453 (567)
T ss_dssp             EBSSS---------------------------------SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred             CCCCC---------------------------------CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence            65331                                 347777654        35777776432 2222223455679


Q ss_pred             EEEEec-C-----CCeEEEEeCCCC
Q 016199          369 LYCGSV-H-----HRGILHLDVNQH  387 (393)
Q Consensus       369 Lyigs~-~-----~~~i~~~~~~~~  387 (393)
                      ||+... +     ++.|..||++..
T Consensus       454 l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          454 LYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEecCCCCCcccCceEEEEECCcc
Confidence            999873 2     359999998654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.15  E-value=7.1e-09  Score=96.72  Aligned_cols=214  Identities=11%  Similarity=0.018  Sum_probs=131.8

Q ss_pred             CCceEEEecCCCEEEEEe------------cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe
Q 016199           84 GPEDLLYDAHSKLIYTGC------------EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~------------~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      .|.+++++++|+.||++.            .++.|..++.++++    .......+..|.+++++++|     +.||++ 
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----~~~~~~~~~~~~~~~~s~dg-----~~l~~~-  152 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----RRKAFEAPRQITMLAWARDG-----SKLYGL-  152 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----EEEEEECCSSCCCEEECTTS-----SCEEEE-
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc----EEEEEeCCCCcceeEECCCC-----CEEEEe-
Confidence            688999999999899886            46899999987654    33333345678999999999     247877 


Q ss_pred             CCCceEEEeCCceEEEee-ccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhccc------CCCcEEEEEeCC
Q 016199          152 AYKGLLKISGNSTVLLTD-EAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEG------KPNGRLLSFDPV  223 (393)
Q Consensus       152 ~~~gl~~id~~g~~~l~~-~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~------~~~g~l~~~d~~  223 (393)
                       .+.|..+|.++.+.... ....    ....+.++++| .+|++....+.....|......+      .....|+.+|..
T Consensus       153 -~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          153 -GRDLHVMDPEAGTLVEDKPIQS----WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             -SSSEEEEETTTTEEEEEECSTT----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             -CCeEEEEECCCCcEeeeeeccc----cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence             45688898765111111 1111    01123566777 46555322110000000000000      011268999998


Q ss_pred             CCeEEEE--ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEec
Q 016199          224 TKETKVL--VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALAT  300 (393)
Q Consensus       224 t~~~~~~--~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~  300 (393)
                      +++...+  ......++++++++||+.+|++   .++|..|+++..   +..... ..+..|.+++++++|+ +|++.. 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~-  299 (337)
T 1pby_B          228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKN---ASIKRV-PLPHSYYSVNVSTDGSTVWLGGA-  299 (337)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTT---EEEEEE-ECSSCCCEEEECTTSCEEEEESB-
T ss_pred             CCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCC---cCccee-cCCCceeeEEECCCCCEEEEEcC-
Confidence            8876532  1223457789999999999988   489999998532   222222 2334688999999998 556522 


Q ss_pred             CcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCC
Q 016199          301 EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDP  354 (393)
Q Consensus       301 ~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~  354 (393)
                      .                                  +.|..+|. +++++..+..+
T Consensus       300 ~----------------------------------~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          300 L----------------------------------GDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             S----------------------------------SEEEEEETTTCCEEEEEECG
T ss_pred             C----------------------------------CcEEEEECcCCcEEEEEEcC
Confidence            2                                  45888886 57777777654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.15  E-value=1.3e-08  Score=103.72  Aligned_cols=228  Identities=11%  Similarity=0.040  Sum_probs=149.5

Q ss_pred             CCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC--ceEEEeec
Q 016199           94 SKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN--STVLLTDE  170 (393)
Q Consensus        94 g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~--g~~~l~~~  170 (393)
                      ++++|+... ++.|..+|.++++    +......+..|++++++++|     +.+|+++..+.|..+|..  ..+.+..-
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~----v~~~i~~g~~p~~v~~SpDG-----r~lyv~~~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYE----IKTVLDTGYAVHISRLSASG-----RYLFVIGRDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCC----EEEEEECSSCEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCe----EEEEEeCCCCccceEECCCC-----CEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence            346787765 7799999998765    44333456789999999999     368999766679999984  32222221


Q ss_pred             cCCccccccccEEEc----CCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--C----------
Q 016199          171 AEGQKFKLTDGVDVA----DDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--D----------  233 (393)
Q Consensus       171 ~~g~~~~~~~~l~~d----~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~----------  233 (393)
                      ..|   ..+.+++++    +|| .+|+++                 ...+.+..+|..+.+......  +          
T Consensus       237 ~~G---~~P~~ia~s~~~~pDGk~l~v~n-----------------~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p  296 (567)
T 1qks_A          237 KIG---SEARSIETSKMEGWEDKYAIAGA-----------------YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP  296 (567)
T ss_dssp             ECC---SEEEEEEECCSTTCTTTEEEEEE-----------------EETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred             ecC---CCCceeEEccccCCCCCEEEEEE-----------------ccCCeEEEEECCCCcEEEEEeccccccccccccC
Confidence            112   236689999    588 688885                 224578889987765433211  1          


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE-EEEecCcchhhhhhhcC
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL-IALATEFSTYWDLAYRY  312 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw-va~~~~r~~~~~~~~~~  312 (393)
                      .....++..++++..++++....++|+.++....+.-....+  ....+|.++.+|++|+++ ++....           
T Consensus       297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~s-----------  363 (567)
T 1qks_A          297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANAR-----------  363 (567)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGG-----------
T ss_pred             CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCC-----------
Confidence            113356888888888888888889999999754321111111  123367889999999955 555432           


Q ss_pred             cchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeC-CCCC----ccEEEEEeCCEEEEEec-CCCeEEEEeCC
Q 016199          313 PFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYD-PEMS----LISSAIKIGDHLYCGSV-HHRGILHLDVN  385 (393)
Q Consensus       313 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d-~~~~----~~~~~~~~~g~Lyigs~-~~~~i~~~~~~  385 (393)
                                             +.|..+|. +++++..+.. ...+    ...+..++.+.+|+.+. .+..|..++.+
T Consensus       364 -----------------------n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          364 -----------------------NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             -----------------------TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             -----------------------CeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence                                   46888886 4667766655 3311    22232334588998764 55899999976


Q ss_pred             C
Q 016199          386 Q  386 (393)
Q Consensus       386 ~  386 (393)
                      .
T Consensus       421 ~  421 (567)
T 1qks_A          421 P  421 (567)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.15  E-value=4.5e-09  Score=95.76  Aligned_cols=195  Identities=11%  Similarity=0.068  Sum_probs=125.9

Q ss_pred             eeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCceEEEee-ccCCccccccccEEEcCCCcEEEEeCCCccchhhhee
Q 016199          131 LGIAFANSDPDADRITMIVADAYK---GLLKISGNSTVLLTD-EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYIL  206 (393)
Q Consensus       131 ~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g~~~l~~-~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~  206 (393)
                      .||.++ +|      .||+++...   .|.++|++..+++.. ..+..  .|..+++++ +++||+.+            
T Consensus        46 qGL~~~-~~------~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~--~FgeGit~~-g~~ly~lt------------  103 (262)
T 3nol_A           46 EGFFYR-NG------YFYESTGLNGRSSIRKVDIESGKTLQQIELGKR--YFGEGISDW-KDKIVGLT------------  103 (262)
T ss_dssp             EEEEEE-TT------EEEEEEEETTEEEEEEECTTTCCEEEEEECCTT--CCEEEEEEE-TTEEEEEE------------
T ss_pred             ceEEEE-CC------EEEEECCCCCCceEEEEECCCCcEEEEEecCCc--cceeEEEEe-CCEEEEEE------------
Confidence            799998 78      999997644   488899865112211 12221  234567766 35899986            


Q ss_pred             hhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC-CcceeeeeccCC-CCCC
Q 016199          207 DIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGRVEKFIETLP-GLPD  284 (393)
Q Consensus       207 ~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~~~~~~~~l~-g~P~  284 (393)
                           -..+.++.||+++.+...-..-  ...|..+++|++.||+++. .++|+.+|.+..+ .+..++-.++.| ..++
T Consensus       104 -----w~~~~v~v~D~~t~~~~~ti~~--~~eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          104 -----WKNGLGFVWNIRNLRQVRSFNY--DGEGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             -----SSSSEEEEEETTTCCEEEEEEC--SSCCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             -----eeCCEEEEEECccCcEEEEEEC--CCCceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence                 2356899999988765432221  1355666688989999984 7899999976432 111221111111 2334


Q ss_pred             eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--------
Q 016199          285 NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--------  355 (393)
Q Consensus       285 ~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--------  355 (393)
                      .+... +|++|++.+..                                  +.|.++|+ +|+++..+..+.        
T Consensus       176 ELe~~-~G~lyan~w~~----------------------------------~~I~vIDp~tG~V~~~Id~~~L~~~~~~~  220 (262)
T 3nol_A          176 ELEWV-DGEIFANVWQT----------------------------------NKIVRIDPETGKVTGIIDLNGILAEAGPL  220 (262)
T ss_dssp             EEEEE-TTEEEEEETTS----------------------------------SEEEEECTTTCBEEEEEECTTGGGGSCSC
T ss_pred             eeEEE-CCEEEEEEccC----------------------------------CeEEEEECCCCcEEEEEECCcCccccccc
Confidence            45554 78999988754                                  56999998 688988887542        


Q ss_pred             ---CCccE-EE-EEeCCEEEEEecCCCeEEEEeCCCCCCC
Q 016199          356 ---MSLIS-SA-IKIGDHLYCGSVHHRGILHLDVNQHPAR  390 (393)
Q Consensus       356 ---~~~~~-~~-~~~~g~Lyigs~~~~~i~~~~~~~~~~~  390 (393)
                         ..... .+ .++.++||+++-.-+.+.++.+.+.++.
T Consensus       221 ~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~~~~~~  260 (262)
T 3nol_A          221 PSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLTQRVGG  260 (262)
T ss_dssp             CSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC--
T ss_pred             cCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEecCCCC
Confidence               01111 22 3345899999999999999998776654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.13  E-value=1.6e-07  Score=87.36  Aligned_cols=188  Identities=15%  Similarity=0.098  Sum_probs=118.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      ....+++++++++.|.++. +|.|..|+.+.+........+.  ........+++.++|     +.|+++...+.|..++
T Consensus        52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----CTLIVGGEASTLSIWD  125 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-----SEEEEEESSSEEEEEE
T ss_pred             CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-----CEEEEEcCCCcEEEEE
Confidence            4567799999999887777 9999999987653211122222  234567899999998     2456665555577777


Q ss_pred             CCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCC
Q 016199          161 GNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFAN  238 (393)
Q Consensus       161 ~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~n  238 (393)
                      .+. .........+. ...+..+++.++|..+++.                 ...+.|..||..+++...... ......
T Consensus       126 ~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-----------------~~dg~v~~~d~~~~~~~~~~~~~~~~i~  187 (337)
T 1gxr_A          126 LAAPTPRIKAELTSS-APACYALAISPDSKVCFSC-----------------CSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             CCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCCCcceeeecccC-CCceEEEEECCCCCEEEEE-----------------eCCCcEEEEeCCCCceeeeeecccCceE
Confidence            654 21111111111 1235688999998655542                 234679999988776544333 344567


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+++++|++.++.+. ..+.|..|++...   +..... ..++....++++++|++.+...
T Consensus       188 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          188 CIDISNDGTKLWTGG-LDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             EEEECTTSSEEEEEE-TTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEEe-cCCcEEEEECCCC---ceEeee-cCCCceEEEEECCCCCEEEEEc
Confidence            899999997666554 5789999998533   211111 2233456788999998666544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.12  E-value=1.7e-07  Score=87.13  Aligned_cols=188  Identities=8%  Similarity=0.036  Sum_probs=123.2

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....+++++++++.|++++.++.|..|+.+++... ....+.........+++.++|     +.++++...+.|..+|..
T Consensus        98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A           98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDS-----KVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTS-----SEEEEEETTSCEEEEETT
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCC-----CEEEEEeCCCcEEEEeCC
Confidence            34567899999998999999999999998765311 122233334557889999988     246666656668888875


Q ss_pred             ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEE
Q 016199          163 STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVL  242 (393)
Q Consensus       163 g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~  242 (393)
                      ..+.+. ...+. ...+..++++++|..+++.                 ...+.|..||..+++.............+++
T Consensus       172 ~~~~~~-~~~~~-~~~i~~~~~~~~~~~l~~~-----------------~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~  232 (337)
T 1gxr_A          172 NQTLVR-QFQGH-TDGASCIDISNDGTKLWTG-----------------GLDNTVRSWDLREGRQLQQHDFTSQIFSLGY  232 (337)
T ss_dssp             TTEEEE-EECCC-SSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CCceee-eeecc-cCceEEEEECCCCCEEEEE-----------------ecCCcEEEEECCCCceEeeecCCCceEEEEE
Confidence            511111 11111 1235688999999665553                 3456899999987766554444445678999


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      +++++.++++. ..+.|..|++...+   ...+. ...+....++++++|++.++...
T Consensus       233 s~~~~~l~~~~-~~~~i~~~~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          233 CPTGEWLAVGM-ESSNVEVLHVNKPD---KYQLH-LHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             CTTSSEEEEEE-TTSCEEEEETTSSC---EEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCEEEEEc-CCCcEEEEECCCCC---eEEEc-CCccceeEEEECCCCCEEEEecC
Confidence            99998776654 57889999986432   22222 22334567889999997766553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.09  E-value=7.8e-09  Score=101.53  Aligned_cols=228  Identities=10%  Similarity=0.051  Sum_probs=135.0

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEEec----------CCeEEEEEcCCCCCcceeeeeecC--------CCceeeeEEC
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTGCE----------DGWIKRVTLNDSPADSLVHNWINT--------GGRPLGIAFA  136 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~----------~g~I~~~~~~~~~~~~~~~~~~~~--------~~~p~gl~~d  136 (393)
                      ..+..|  ..| ++++++||+.||++..          ++.|..||..+.+    +......        +..|.+++++
T Consensus       113 ~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~----vv~~I~v~g~~r~~~g~~P~~~~~s  185 (426)
T 3c75_H          113 GMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL----PIADIELPDAPRFLVGTYQWMNALT  185 (426)
T ss_dssp             EEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----EEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred             EEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc----EEEEEECCCccccccCCCcceEEEc
Confidence            344445  468 9999999999999873          4579999988765    3322222        3579999999


Q ss_pred             CCCCCCCceEEEEEeCC--CceEEEeCCceEEEee-ccCCcccccccc----EEEcCCCcEEEEeCCCc-cc--------
Q 016199          137 NSDPDADRITMIVADAY--KGLLKISGNSTVLLTD-EAEGQKFKLTDG----VDVADDGMIYFTDASNK-YY--------  200 (393)
Q Consensus       137 ~~G~~~~~~~L~v~~~~--~gl~~id~~g~~~l~~-~~~g~~~~~~~~----l~~d~dG~l~~td~~~~-~~--------  200 (393)
                      +||     +.+||++..  +.|..+|....+++.. ...+.....+.+    +.+.+||.+.+.+.... ..        
T Consensus       186 pDG-----k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~  260 (426)
T 3c75_H          186 PDN-----KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH  260 (426)
T ss_dssp             TTS-----SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred             CCC-----CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence            999     479999753  4588999866222211 111111111222    56667885544443211 00        


Q ss_pred             hhh---h-----e---ehhcccCCCcEEEEEeCCCCeEEEEec-------C---ccCCCc---EEEcCCCCEEEEEeCC-
Q 016199          201 LRE---Y-----I---LDIFEGKPNGRLLSFDPVTKETKVLVS-------D---LYFANG---VVLSPDQTHLVYCETS-  255 (393)
Q Consensus       201 ~~~---~-----~---~~~~e~~~~g~l~~~d~~t~~~~~~~~-------~---l~~~ng---i~~s~dg~~l~v~~~~-  255 (393)
                      ...   +     .   ..++-....+.|+.+|..++..+....       .   ...|.|   +++++|++.+|++... 
T Consensus       261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~  340 (426)
T 3c75_H          261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR  340 (426)
T ss_dssp             CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred             cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence            000   0     0   000000123567777765544333211       0   012444   8999999999998742 


Q ss_pred             --------CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhh
Q 016199          256 --------MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYL  326 (393)
Q Consensus       256 --------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~  326 (393)
                              .+.|..+|....+  ....+  ..+..|.++++++||+ +|+..+...                        
T Consensus       341 ~~gthk~~s~~VsVID~~T~k--vv~~I--~vg~~P~gia~spDg~~~lyv~n~~s------------------------  392 (426)
T 3c75_H          341 DEWKHKAASRFVVVLNAETGE--RINKI--ELGHEIDSINVSQDAEPLLYALSAGT------------------------  392 (426)
T ss_dssp             CTTCTTSCEEEEEEEETTTCC--EEEEE--EEEEEECEEEECCSSSCEEEEEETTT------------------------
T ss_pred             ccccccCCCCEEEEEECCCCe--EEEEE--ECCCCcCeEEEccCCCEEEEEEcCCC------------------------
Confidence                    3579999975332  11222  1334699999999999 777666321                        


Q ss_pred             CCCCCCCCCceEEEECC-CCcEEEEe
Q 016199          327 GMPPMGKSSSGVFIVDL-DGKPIAHY  351 (393)
Q Consensus       327 ~~~~~~~~~~~v~~~d~-~g~~~~~~  351 (393)
                               +.|..+|. .++++..+
T Consensus       393 ---------~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          393 ---------QTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ---------TEEEEEETTTCCEEEEE
T ss_pred             ---------CeEEEEECCCCCEEEEe
Confidence                     56899996 57888876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.09  E-value=2.4e-08  Score=90.14  Aligned_cols=198  Identities=15%  Similarity=0.146  Sum_probs=126.7

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCceEEEee-ccCCccccccccEEEcCCCcEEEEeCCCccchhhh
Q 016199          129 RPLGIAFANSDPDADRITMIVADAYK---GLLKISGNSTVLLTD-EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREY  204 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g~~~l~~-~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~  204 (393)
                      --.|+.++. +      +||+++...   .|.++|++..+++.. .....  .+..+++++ +++||..+          
T Consensus        22 ftqGL~~~~-~------~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--~fgeGi~~~-~~~ly~lt----------   81 (243)
T 3mbr_X           22 FTEGLFYLR-G------HLYESTGETGRSSVRKVDLETGRILQRAEVPPP--YFGAGIVAW-RDRLIQLT----------   81 (243)
T ss_dssp             CEEEEEEET-T------EEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--CCEEEEEEE-TTEEEEEE----------
T ss_pred             ccccEEEEC-C------EEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--cceeEEEEe-CCEEEEEE----------
Confidence            357999986 7      999997754   488999865122211 22222  234566665 46899986          


Q ss_pred             eehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC-CcceeeeeccCC-CC
Q 016199          205 ILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGRVEKFIETLP-GL  282 (393)
Q Consensus       205 ~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~~~~~~~~l~-g~  282 (393)
                             -..+.++.||+++.+...-...  ...|..++.|++.||+++ +.++|+.+|.+..+ .+..++-....+ .+
T Consensus        82 -------w~~~~v~v~D~~tl~~~~ti~~--~~~Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~  151 (243)
T 3mbr_X           82 -------WRNHEGFVYDLATLTPRARFRY--PGEGWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDN  151 (243)
T ss_dssp             -------SSSSEEEEEETTTTEEEEEEEC--SSCCCEEEECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             -------eeCCEEEEEECCcCcEEEEEeC--CCCceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence                   2356899999988765432221  135666778898999998 48899999976432 111222111111 12


Q ss_pred             CCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC------
Q 016199          283 PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE------  355 (393)
Q Consensus       283 P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~------  355 (393)
                      .+.+... +|++|+..+..                                  ..|.++|+ +|+++..+....      
T Consensus       152 lNeLe~~-~G~lyanvw~s----------------------------------~~I~vIDp~tG~V~~~idl~~l~~~~~  196 (243)
T 3mbr_X          152 LNELEWV-NGELLANVWLT----------------------------------SRIARIDPASGKVVAWIDLQALVPDAD  196 (243)
T ss_dssp             EEEEEEE-TTEEEEEETTT----------------------------------TEEEEECTTTCBEEEEEECGGGSTTTT
T ss_pred             ceeeEEe-CCEEEEEECCC----------------------------------CeEEEEECCCCCEEEEEECCcCccccc
Confidence            3344443 78999888754                                  46999998 688888876321      


Q ss_pred             ------CCccE-EE-EEeCCEEEEEecCCCeEEEEeCCCCCCCC
Q 016199          356 ------MSLIS-SA-IKIGDHLYCGSVHHRGILHLDVNQHPARA  391 (393)
Q Consensus       356 ------~~~~~-~~-~~~~g~Lyigs~~~~~i~~~~~~~~~~~~  391 (393)
                            ..... .+ .+..++||+++-.-+.+.++.+.+.++.|
T Consensus       197 ~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~~~~~~  240 (243)
T 3mbr_X          197 ALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTPLPHAA  240 (243)
T ss_dssp             SCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECCCCC--
T ss_pred             cccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEecCCccc
Confidence                  11112 22 23458999999999999999998877654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.09  E-value=8.8e-09  Score=98.73  Aligned_cols=192  Identities=13%  Similarity=0.125  Sum_probs=114.8

Q ss_pred             CCceEEEecCCCE--EEEEe-------------cCCeEEEEEcCC-CCCcceeeeee-cCCCceeeeEECCCCCCCCceE
Q 016199           84 GPEDLLYDAHSKL--IYTGC-------------EDGWIKRVTLND-SPADSLVHNWI-NTGGRPLGIAFANSDPDADRIT  146 (393)
Q Consensus        84 ~Pe~ia~d~~g~~--L~~~~-------------~~g~I~~~~~~~-~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~  146 (393)
                      .|.+++++++|+.  +|++.             .+|.+..|+.+. +........+. .....|++++++++|     +.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-----~~  158 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-----TY  158 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-----SE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-----CE
Confidence            3788999999984  34443             567777777753 22000011111 134579999999999     25


Q ss_pred             EEEEeCC-CceEEEeCC--c-eEEEeeccCCc-cccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199          147 MIVADAY-KGLLKISGN--S-TVLLTDEAEGQ-KFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSF  220 (393)
Q Consensus       147 L~v~~~~-~gl~~id~~--g-~~~l~~~~~g~-~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~  220 (393)
                      ||+++.. ..|..++.+  | ...+.. .... ....+.++++++|| .+|+++..               ...-.++.+
T Consensus       159 l~~~~~~~~~v~~~~~~~~g~~~~~~~-~~~~~~g~~p~~~~~spdg~~l~v~~~~---------------~~~v~v~~~  222 (365)
T 1jof_A          159 LYSADLTANKLWTHRKLASGEVELVGS-VDAPDPGDHPRWVAMHPTGNYLYALMEA---------------GNRICEYVI  222 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEE-EECSSTTCCEEEEEECTTSSEEEEEETT---------------TTEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCEEEeee-EecCCCCCCCCEeEECCCCCEEEEEECC---------------CCeEEEEEE
Confidence            8888753 457777754  4 332221 1100 12346789999999 57887521               122345556


Q ss_pred             eCCCCeEEE----Eec---Cc---c-------CCCcEE-EcCCCCEEEEEeCCCC-----eEEEEEecCCCCcceee---
Q 016199          221 DPVTKETKV----LVS---DL---Y-------FANGVV-LSPDQTHLVYCETSMR-----RCRKFYIKGKNAGRVEK---  274 (393)
Q Consensus       221 d~~t~~~~~----~~~---~l---~-------~~ngi~-~s~dg~~l~v~~~~~~-----ri~~~~~~g~~~~~~~~---  274 (393)
                      |..+++...    +..   +.   .       .+.+++ ++|||++||+++...+     +|..|+++.  .++...   
T Consensus       223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~--~g~~~~~~~  300 (365)
T 1jof_A          223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD--CGSIEKQLF  300 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT--TSCEEEEEE
T ss_pred             eCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC--CCCEEEeee
Confidence            665665431    211   11   1       477899 9999999999987665     899999852  233332   


Q ss_pred             eeccCCCCCCeEEECC---CCCE-EEEE
Q 016199          275 FIETLPGLPDNIRYDG---EGHY-LIAL  298 (393)
Q Consensus       275 ~~~~l~g~P~~i~~d~---~G~l-wva~  298 (393)
                      +.......|.++++++   +|++ +++.
T Consensus       301 ~~~~~~~~~~~~a~sp~~~dg~~l~v~~  328 (365)
T 1jof_A          301 LSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             eeecCCCCcccceecCCCcCCCEEEEEE
Confidence            2222233578899998   7874 4443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.09  E-value=1e-08  Score=99.14  Aligned_cols=250  Identities=11%  Similarity=0.065  Sum_probs=139.8

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEEec----------CCeEEEEEcCCCCCcceeeeeecC--------CCceeeeEEC
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTGCE----------DGWIKRVTLNDSPADSLVHNWINT--------GGRPLGIAFA  136 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~----------~g~I~~~~~~~~~~~~~~~~~~~~--------~~~p~gl~~d  136 (393)
                      ..+..|  .+|. +++++||+.+|+++.          ++.|..||..+.+    +......        +..|.+++++
T Consensus        73 ~~I~vG--~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~----v~~~I~v~~g~r~~~g~~P~~~a~s  145 (386)
T 3sjl_D           73 GMIDGG--FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL----PTADIELPDAPRFLVGTYPWMTSLT  145 (386)
T ss_dssp             EEEEEC--SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----EEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             EEEECC--CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe----EEEEEECCCccccccCCCCceEEEc
Confidence            445455  4575 999999999999862          4568999988765    3222221        2369999999


Q ss_pred             CCCCCCCceEEEEEeC--CCceEEEeCCceEEEee-ccCCcccccccc----EEEcCCCcEEEEeCCCccchhhheehhc
Q 016199          137 NSDPDADRITMIVADA--YKGLLKISGNSTVLLTD-EAEGQKFKLTDG----VDVADDGMIYFTDASNKYYLREYILDIF  209 (393)
Q Consensus       137 ~~G~~~~~~~L~v~~~--~~gl~~id~~g~~~l~~-~~~g~~~~~~~~----l~~d~dG~l~~td~~~~~~~~~~~~~~~  209 (393)
                      +||     +.+||++.  .+.|..+|....+++.. ...+....++.+    +++.+||.                    
T Consensus       146 pDG-----k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~--------------------  200 (386)
T 3sjl_D          146 PDG-----KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS--------------------  200 (386)
T ss_dssp             TTS-----SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSC--------------------
T ss_pred             CCC-----CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCC--------------------
Confidence            999     47999975  35688899866222211 111211111111    23444553                    


Q ss_pred             ccCCCcEEEEEeCCC-CeEEE----Eec---CccCCCcEEE-cCCCCEEEEEeCCCCeEEEEEecCCCC---cceeeeec
Q 016199          210 EGKPNGRLLSFDPVT-KETKV----LVS---DLYFANGVVL-SPDQTHLVYCETSMRRCRKFYIKGKNA---GRVEKFIE  277 (393)
Q Consensus       210 e~~~~g~l~~~d~~t-~~~~~----~~~---~l~~~ngi~~-s~dg~~l~v~~~~~~ri~~~~~~g~~~---~~~~~~~~  277 (393)
                             +..++..+ ++...    ..+   ...+.+ .++ .+||+.+|++.  .++++.++..++..   .....+..
T Consensus       201 -------~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~-~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~  270 (386)
T 3sjl_D          201 -------LAKVAFGTEGTPEITHTEVFHPEDEFLINH-PAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTE  270 (386)
T ss_dssp             -------EEEEECCSSSCCEEEECCCCSCTTSCBCSC-CEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCH
T ss_pred             -------EEEEECCCCCeEEEeecceecccccccccc-ceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceecccc
Confidence                   33333322 22111    000   111222 344 47886666554  58999999865431   11111111


Q ss_pred             --cCCC-CCC---eEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEE
Q 016199          278 --TLPG-LPD---NIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIA  349 (393)
Q Consensus       278 --~l~g-~P~---~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~  349 (393)
                        ..++ .|.   .++++++++ +||++.....                         ...-.+.+.|..+|. .+++++
T Consensus       271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~-------------------------~~hk~~~~~V~viD~~t~kv~~  325 (386)
T 3sjl_D          271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDE-------------------------WRHKTASRFVVVLDAKTGERLA  325 (386)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCT-------------------------TCTTSCEEEEEEEETTTCCEEE
T ss_pred             ccccccccCCCcceeeECCCCCeEEEEeccccc-------------------------cccCCCCCEEEEEECCCCeEEE
Confidence              0011 233   378887755 8888763210                         000111245999997 578888


Q ss_pred             EeeCCCCCccEEEEE-eCC-EEEEEecCCCeEEEEeCCCCCCCCC
Q 016199          350 HYYDPEMSLISSAIK-IGD-HLYCGSVHHRGILHLDVNQHPARAI  392 (393)
Q Consensus       350 ~~~d~~~~~~~~~~~-~~g-~Lyigs~~~~~i~~~~~~~~~~~~~  392 (393)
                      .+..+... ...... ++. +||+++..++.|..+|......+++
T Consensus       326 ~i~vg~~~-~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          326 KFEMGHEI-DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             EEEEEEEE-CEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEECCCCc-ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            87754311 123333 443 6899888889999999988776654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.08  E-value=1.5e-07  Score=94.92  Aligned_cols=201  Identities=12%  Similarity=0.162  Sum_probs=135.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeCCCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~~~gl~~id~  161 (393)
                      ....+++++++|+.|.++..++.|..++..+..    ...+......+.++++.++|      + |..+...+.|..++.
T Consensus       345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~----~~~~~~~~~~v~~~~~s~dg------~~l~~~~~d~~v~~~~~  414 (577)
T 2ymu_A          345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDG------QTIASASDDKTVKLWNR  414 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTCCE----EEEEECCSSCEEEEEECTTS------SCEEEEETTSEEEEECT
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE----EEEecCCCCCeEEEEECCCC------CEEEEEeCCCEEEEEeC
Confidence            345678999999988899999999999876543    45554445667899999999      5 444544455777787


Q ss_pred             Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199          162 NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG  239 (393)
Q Consensus       162 ~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng  239 (393)
                      ++  ...+...     ...+.++++.+|+.++++-                 ...+.|..||..++....+.........
T Consensus       415 ~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~-----------------~~d~~v~~w~~~~~~~~~~~~~~~~v~~  472 (577)
T 2ymu_A          415 NGQLLQTLTGH-----SSSVWGVAFSPDDQTIASA-----------------SDDKTVKLWNRNGQLLQTLTGHSSSVRG  472 (577)
T ss_dssp             TCCEEEEEECC-----SSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTSCEEEEEECCSSCEEE
T ss_pred             CCCEEEEecCC-----CCCeEEEEECCCCCEEEEE-----------------cCCCEEEEEECCCCEEEEEcCCCCCEEE
Confidence            66  2333211     1235688999999766653                 2346788888766655555544556688


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      ++++||++.+. +....+.|..|+.+++   ....+. ...+-...++++++|++.++....                  
T Consensus       473 ~~~spd~~~la-s~~~d~~i~iw~~~~~---~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~d------------------  529 (577)
T 2ymu_A          473 VAFSPDGQTIA-SASDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASDD------------------  529 (577)
T ss_dssp             EEECTTSCEEE-EEETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSSCEEEEETT------------------
T ss_pred             EEEcCCCCEEE-EEeCCCEEEEEcCCCC---EEEEEe-CCCCCEEEEEEcCCCCEEEEEECc------------------
Confidence            99999997654 4556788888886543   122222 222334568899999977765533                  


Q ss_pred             hhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCC
Q 016199          320 GMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDP  354 (393)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~  354 (393)
                                      +.|..+|.+|+.+..+...
T Consensus       530 ----------------g~v~lwd~~~~~~~~~~~h  548 (577)
T 2ymu_A          530 ----------------KTVKLWNRNGQLLQTLTGH  548 (577)
T ss_dssp             ----------------SEEEEECTTSCEEEEEECC
T ss_pred             ----------------CEEEEEeCCCCEEEEEcCC
Confidence                            4577788889988887644

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.08  E-value=5.7e-09  Score=100.23  Aligned_cols=206  Identities=10%  Similarity=0.099  Sum_probs=119.8

Q ss_pred             cCCCceEEEecC---CCEEEEEec--------CCeEEEEEcCCCCCcc-eeeee-ecC------CCceeeeEECCCCCCC
Q 016199           82 LKGPEDLLYDAH---SKLIYTGCE--------DGWIKRVTLNDSPADS-LVHNW-INT------GGRPLGIAFANSDPDA  142 (393)
Q Consensus        82 ~~~Pe~ia~d~~---g~~L~~~~~--------~g~I~~~~~~~~~~~~-~~~~~-~~~------~~~p~gl~~d~~G~~~  142 (393)
                      ..+|.+|+++|+   ++.||+...        ..+|.+++.+...... ..+.+ ...      ...+.+|+++++|   
T Consensus        65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG---  141 (353)
T 2g8s_A           65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG---  141 (353)
T ss_dssp             TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS---
T ss_pred             CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC---
Confidence            357889999995   557998753        2379999876432110 01111 111      1236789999999   


Q ss_pred             CceEEEEEeCC--------------CceEEEeCCc-eEE---Ee------eccCCccccccccEEEcC-CCcEEEEeCCC
Q 016199          143 DRITMIVADAY--------------KGLLKISGNS-TVL---LT------DEAEGQKFKLTDGVDVAD-DGMIYFTDASN  197 (393)
Q Consensus       143 ~~~~L~v~~~~--------------~gl~~id~~g-~~~---l~------~~~~g~~~~~~~~l~~d~-dG~l~~td~~~  197 (393)
                         .|||+...              +.|++++++| ...   +.      .+.-...++.+.++++|+ +|+||++|.+.
T Consensus       142 ---~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          142 ---YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             ---EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS
T ss_pred             ---cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC
Confidence               99999643              2499999887 210   00      000001246789999999 79999998764


Q ss_pred             ccc----h----hhheehhcccCCCcEEEEEeC----------CCCeEE--EEecCccCCCcEEEcC-------CCCEEE
Q 016199          198 KYY----L----REYILDIFEGKPNGRLLSFDP----------VTKETK--VLVSDLYFANGVVLSP-------DQTHLV  250 (393)
Q Consensus       198 ~~~----~----~~~~~~~~e~~~~g~l~~~d~----------~t~~~~--~~~~~l~~~ngi~~s~-------dg~~l~  250 (393)
                      +..    .    ..|-+...++.   .  .|+.          ..+...  ........|.|+++..       +| .+|
T Consensus       219 ~~~dei~~i~~G~nyGwp~~~~~---~--~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g-~l~  292 (353)
T 2g8s_A          219 RGGDEINIPQKGKNYGWPLATWG---I--NYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQ-KLF  292 (353)
T ss_dssp             BSCEEEECCCTTCBCCTTTBCSS---B--CTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTT-EEE
T ss_pred             CCCcEEeEeccCCcCCCCCccCC---C--CCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCC-cEE
Confidence            210    0    01111111100   0  0000          000000  0001123477888864       34 799


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          251 YCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       251 v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      +++...++|+++++++.+....+.+.....+.|.++++++||.+||++.
T Consensus       293 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          293 IGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred             EEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence            9999999999999975322222334434445799999999999999865

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.07  E-value=1.8e-07  Score=94.39  Aligned_cols=183  Identities=14%  Similarity=0.198  Sum_probs=120.1

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....++++.++++.+.+++.++.|..|+.++..    ...+........++++.++|     +.|..+...+.+..++.+
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----~~~~~~~~~~v~~~~~s~~g-----~~l~~~~~dg~v~~~~~~  374 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----LQTLTGHSSSVWGVAFSPDG-----QTIASASDDKTVKLWNRN  374 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE----EEEECCCSSCEEEEEECTTS-----SEEEEEETTSEEEEEETT
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----eEEEeCCCCCEEEEEECCCC-----CEEEEEeCCCEEEEEcCC
Confidence            445678999999988889999999999987654    45444444567899999999     134445444446667776


Q ss_pred             c--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          163 S--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       163 g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                      +  ...+.    +. ...+.++++++||..+++-                 ...+.|..||........+...-....++
T Consensus       375 ~~~~~~~~----~~-~~~v~~~~~s~dg~~l~~~-----------------~~d~~v~~~~~~~~~~~~~~~~~~~v~~~  432 (577)
T 2ymu_A          375 GQLLQTLT----GH-SSSVRGVAFSPDGQTIASA-----------------SDDKTVKLWNRNGQLLQTLTGHSSSVWGV  432 (577)
T ss_dssp             CCEEEEEE----CC-SSCEEEEEECTTSSCEEEE-----------------ETTSEEEEECTTCCEEEEEECCSSCEEEE
T ss_pred             CCEEEEec----CC-CCCeEEEEECCCCCEEEEE-----------------eCCCEEEEEeCCCCEEEEecCCCCCeEEE
Confidence            6  22222    11 1235688999999655542                 23467888887655555555444556789


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +++||++.+.. ....+.|..|+.+++   ....+. ........++++++|++.++....
T Consensus       433 ~~s~d~~~l~~-~~~d~~v~~w~~~~~---~~~~~~-~~~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          433 AFSPDDQTIAS-ASDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             EECTTSSEEEE-EETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSCEEEEEETT
T ss_pred             EECCCCCEEEE-EcCCCEEEEEECCCC---EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCC
Confidence            99999976654 455788988886543   122222 223334568899999987765543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.06  E-value=8.7e-08  Score=91.38  Aligned_cols=221  Identities=11%  Similarity=0.125  Sum_probs=132.3

Q ss_pred             CCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCC-c-eEEEee--ccCCccccccccEEEcCC----CcEEEEeCCC
Q 016199          127 GGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGN-S-TVLLTD--EAEGQKFKLTDGVDVADD----GMIYFTDASN  197 (393)
Q Consensus       127 ~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~-g-~~~l~~--~~~g~~~~~~~~l~~d~d----G~l~~td~~~  197 (393)
                      -..|.+|++.++|      ++||+.. .+.|++++.+ + .+.+..  .+.......+.+|+++|+    |.||++.+. 
T Consensus        31 L~~P~~ia~~pdG------~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~-  103 (347)
T 3das_A           31 LNSPWGLAPLPGG------DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS-  103 (347)
T ss_dssp             CSSEEEEEECTTS------CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC-
T ss_pred             CCCceEEEEcCCC------cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec-
Confidence            4579999999999      9999987 5668999875 4 333321  111111234679999984    889997421 


Q ss_pred             ccchhhheehhcccCCCcEEEEEeCCCC--------eEEEEec-----CccCCCcEEEcCCCCEEEEEe-----------
Q 016199          198 KYYLREYILDIFEGKPNGRLLSFDPVTK--------ETKVLVS-----DLYFANGVVLSPDQTHLVYCE-----------  253 (393)
Q Consensus       198 ~~~~~~~~~~~~e~~~~g~l~~~d~~t~--------~~~~~~~-----~l~~~ngi~~s~dg~~l~v~~-----------  253 (393)
                                    ....+|.||....+        ..+.+..     ..++.+.|++++|| .|||+.           
T Consensus       104 --------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd  168 (347)
T 3das_A          104 --------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQD  168 (347)
T ss_dssp             --------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTC
T ss_pred             --------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccC
Confidence                          12457998876541        1233322     24567789999999 699984           


Q ss_pred             --CCCCeEEEEEecCCC-----CcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhh
Q 016199          254 --TSMRRCRKFYIKGKN-----AGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYL  326 (393)
Q Consensus       254 --~~~~ri~~~~~~g~~-----~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~  326 (393)
                        ...++|+|++.+|.-     ....+++..++- -|.++++|++|++|++.+..+.  .|      .+.++.   +.-.
T Consensus       169 ~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~--~d------eln~i~---~G~n  236 (347)
T 3das_A          169 RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDT--WD------ELNAIK---PGDN  236 (347)
T ss_dssp             TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSS--CE------EEEEEC---TTCB
T ss_pred             CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCC--Cc------eeeEEc---CCCE
Confidence              246899999988641     112355654432 4899999999999999876532  00      000000   0000


Q ss_pred             CCCCCCCCCceEEEECCCC--cEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          327 GMPPMGKSSSGVFIVDLDG--KPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       327 ~~~~~~~~~~~v~~~d~~g--~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                      -+||......     +..+  ..+..+. +.....+.+...+|.+|++.+....|.+++++..
T Consensus       237 yGwP~~~g~~-----~~~~~~~P~~~~~-~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~  293 (347)
T 3das_A          237 YGWPEAEGKG-----GGSGFHDPVAQWS-TDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGT  293 (347)
T ss_dssp             CCTTTCCSSC-----CCTTCCCCSEEEC-TTTCCEEEEEEETTEEEEEESTTCSEEEEEEETT
T ss_pred             ecCCcccCCC-----CCccccCCcEecC-CCCCCCcceEEEcCceeeccccCCEEEEEEecCC
Confidence            0233221100     0111  1111121 1112334555568999999999999999998654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.06  E-value=5.7e-07  Score=84.59  Aligned_cols=190  Identities=12%  Similarity=0.091  Sum_probs=122.5

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEE-EEEeCCCceE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITM-IVADAYKGLL  157 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L-~v~~~~~gl~  157 (393)
                      .|....-.++++.+++..+.+++.|+.|..|+..++.   ....+.........+++.++|      ++ ..+...+.+.
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~---~~~~~~~~~~~~~~~~~spdg------~~l~~g~~dg~v~  147 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK---QIKSIDAGPVDAWTLAFSPDS------QYLATGTHVGKVN  147 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCTTCCCCEEECTTS------SEEEEECTTSEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC---EEEEEeCCCccEEEEEECCCC------CEEEEEcCCCcEE
Confidence            4444556678899999888888999999999987654   133343333456789999999      54 4444344566


Q ss_pred             EEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-cc
Q 016199          158 KISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LY  235 (393)
Q Consensus       158 ~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~  235 (393)
                      .++.+. .........+   ..+..+++.++|.++++-                 ...+.|..||..+++......+ ..
T Consensus       148 i~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~lasg-----------------~~dg~i~iwd~~~~~~~~~~~~h~~  207 (321)
T 3ow8_A          148 IFGVESGKKEYSLDTRG---KFILSIAYSPDGKYLASG-----------------AIDGIINIFDIATGKLLHTLEGHAM  207 (321)
T ss_dssp             EEETTTCSEEEEEECSS---SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEEcCCCceeEEecCCC---ceEEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCcEEEEEcccCC
Confidence            777654 2221111111   235688999999766653                 3356789999988765443333 34


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ..+.++++||++.+ ++....+.|..|++...+  ....+. ...+....++++++|.+.++....
T Consensus       208 ~v~~l~~spd~~~l-~s~s~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D  269 (321)
T 3ow8_A          208 PIRSLTFSPDSQLL-VTASDDGYIKIYDVQHAN--LAGTLS-GHASWVLNVAFCPDDTHFVSSSSD  269 (321)
T ss_dssp             CCCEEEECTTSCEE-EEECTTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeEEEEcCCCCEE-EEEcCCCeEEEEECCCcc--eeEEEc-CCCCceEEEEECCCCCEEEEEeCC
Confidence            56889999999754 566678889999985321  112222 222334568899999977766543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.06  E-value=3.9e-09  Score=104.86  Aligned_cols=172  Identities=16%  Similarity=0.195  Sum_probs=113.1

Q ss_pred             CceEEecCccCCCceEEEecCCCEEEEEecCC-eEEEEEcCCCCCcceeeeee---c------CCCceeeeEECC----C
Q 016199           73 GSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDG-WIKRVTLNDSPADSLVHNWI---N------TGGRPLGIAFAN----S  138 (393)
Q Consensus        73 ~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g-~I~~~~~~~~~~~~~~~~~~---~------~~~~p~gl~~d~----~  138 (393)
                      ..+.+.++ +..|.+|+++++|+ ||++...+ +|++++..++.    .+.+.   .      ..+.++||++++    +
T Consensus        18 ~~~~~a~~-l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~----~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~   91 (454)
T 1cru_A           18 DKKVILSN-LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGS----VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN   91 (454)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCC----EEEEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred             EEEEEECC-CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCc----EeEEecCCccccccCCCCceeEEEECCCcCcC
Confidence            34556555 78999999999997 88888875 79999865443    33221   1      134678999998    6


Q ss_pred             CCCCCceEEEEEeCC-------------CceEEEeCC---c----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCc
Q 016199          139 DPDADRITMIVADAY-------------KGLLKISGN---S----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNK  198 (393)
Q Consensus       139 G~~~~~~~L~v~~~~-------------~gl~~id~~---g----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~  198 (393)
                      |      .||++...             ..|.+++.+   +    .+++..........+.++|++++||.|||+.....
T Consensus        92 g------~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~  165 (454)
T 1cru_A           92 P------YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG  165 (454)
T ss_dssp             C------EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred             C------EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCC
Confidence            7      99999753             357777542   1    22333222222234578999999999999854321


Q ss_pred             cchhhhe---------------ehhcccCCCcEEEEEeCCCC-----------eEEEEecCccCCCcEEEcCCCCEEEEE
Q 016199          199 YYLREYI---------------LDIFEGKPNGRLLSFDPVTK-----------ETKVLVSDLYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       199 ~~~~~~~---------------~~~~e~~~~g~l~~~d~~t~-----------~~~~~~~~l~~~ngi~~s~dg~~l~v~  252 (393)
                      .......               ..-......|+|+|+++++.           ..+.+..++..|.|++++++| .||++
T Consensus       166 ~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G-~L~~~  244 (454)
T 1cru_A          166 RNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNG-KLLQS  244 (454)
T ss_dssp             TTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTS-CEEEE
T ss_pred             CCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCC-CEEEE
Confidence            1000000               00001123688999999865           456678889999999999987 69999


Q ss_pred             eCCCC
Q 016199          253 ETSMR  257 (393)
Q Consensus       253 ~~~~~  257 (393)
                      |....
T Consensus       245 d~g~~  249 (454)
T 1cru_A          245 EQGPN  249 (454)
T ss_dssp             EECSS
T ss_pred             ecCCC
Confidence            97644

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.06  E-value=3.8e-07  Score=84.68  Aligned_cols=243  Identities=12%  Similarity=0.123  Sum_probs=146.5

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .|......+++++++|+.|.+++.+|.|..|+..++.   ....+.........+++.++|     +.|..+...+-|..
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~-----~~l~s~~~d~~i~v   91 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDS-----NLLVSASDDKTLKI   91 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTS-----SEEEEEETTSEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---cchhhccCCCceEEEEEcCCC-----CEEEEECCCCEEEE
Confidence            3433556779999999989899999999999987654   123333334567899999998     13445544455777


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCc
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDL  234 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l  234 (393)
                      +|.+.   ...+.    +. ...+..+.+.+++.++++-                 ...+.|..||..+++..... ...
T Consensus        92 wd~~~~~~~~~~~----~~-~~~v~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~  149 (312)
T 4ery_A           92 WDVSSGKCLKTLK----GH-SNYVFCCNFNPQSNLIVSG-----------------SFDESVRIWDVKTGKCLKTLPAHS  149 (312)
T ss_dssp             EETTTCCEEEEEE----CC-SSCEEEEEECSSSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EECCCCcEEEEEc----CC-CCCEEEEEEcCCCCEEEEE-----------------eCCCcEEEEECCCCEEEEEecCCC
Confidence            77654   22221    11 1235678899999776663                 33567899998876644333 233


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcc
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPF  314 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~  314 (393)
                      .....++++++++.++ +....+.|..|++...+  ....+..........++++++|++.++....             
T Consensus       150 ~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------  213 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIV-SSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATLD-------------  213 (312)
T ss_dssp             SCEEEEEECTTSSEEE-EEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEETT-------------
T ss_pred             CcEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcCC-------------
Confidence            4457889999997654 45567889999975321  1222221111123457889999977765533             


Q ss_pred             hhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--CCcc-EEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          315 IRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--MSLI-SSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       315 ~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--~~~~-~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                                           +.|..+|. +++.+..+....  ...+ ......++.+.+++-....|...++....
T Consensus       214 ---------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          214 ---------------------NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             ---------------------TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             ---------------------CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence                                 34666665 456666665332  1111 22222445444444455667777776544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.05  E-value=1.5e-07  Score=89.05  Aligned_cols=242  Identities=10%  Similarity=0.039  Sum_probs=143.0

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      .-.+++++++++.|++++.++.|..|+.+++.. .....+.........+++.++|     +.|+.+...+.|..++.+.
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~-----~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDS-----NRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTT-----TEEEEEETTSCEEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-EeeeeecCCCCcccEEEEeCCC-----CEEEEEcCCCeEEEEECCC
Confidence            456789999999888888999999999876520 0144444445667899999988     1455555455577777543


Q ss_pred             --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe----EEEEecC-ccC
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE----TKVLVSD-LYF  236 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~----~~~~~~~-l~~  236 (393)
                        ..... ...+. ...+..+++.++|.++++-                 ...+.+..||..++.    ...+... ...
T Consensus        84 ~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~-----------------~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  144 (372)
T 1k8k_C           84 RTWKPTL-VILRI-NRAARCVRWAPNEKKFAVG-----------------SGSRVISICYFEQENDWWVCKHIKKPIRST  144 (372)
T ss_dssp             TEEEEEE-ECCCC-SSCEEEEEECTTSSEEEEE-----------------ETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred             CeeeeeE-EeecC-CCceeEEEECCCCCEEEEE-----------------eCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence              11111 11111 1336688999999655552                 223456665554443    2222222 345


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC---------------CcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN---------------AGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~---------------~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ...++++++++.++. ....+.|..|++....               .++.........+....++++++|++.++....
T Consensus       145 i~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             EEEEEECTTSSEEEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             eeEEEEcCCCCEEEE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            678999999976655 4457889999964210               111111111222334568899999866655433


Q ss_pred             cchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEE
Q 016199          302 FSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGIL  380 (393)
Q Consensus       302 r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~  380 (393)
                                                        +.|..+|. +++.+..+........+.....++.+.+++ .+..|.
T Consensus       224 ----------------------------------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~  268 (372)
T 1k8k_C          224 ----------------------------------STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPV  268 (372)
T ss_dssp             ----------------------------------TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCE
T ss_pred             ----------------------------------CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEE
Confidence                                              45777775 577777776543332333344566665555 666666


Q ss_pred             EEeCCC
Q 016199          381 HLDVNQ  386 (393)
Q Consensus       381 ~~~~~~  386 (393)
                      .+++..
T Consensus       269 i~~~~~  274 (372)
T 1k8k_C          269 LFTYDS  274 (372)
T ss_dssp             EEEEET
T ss_pred             EEEccC
Confidence            666544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.03  E-value=4.2e-07  Score=85.38  Aligned_cols=192  Identities=10%  Similarity=0.064  Sum_probs=116.6

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+.-....+++++++|+.|++++.+|.|..|+..++.   ....+.........+++.++|     +.|+.+...+.|..
T Consensus        29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~-----~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFT-----KYCVTGSADYSIKL  100 (369)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTS-----SEEEEEETTTEEEE
T ss_pred             EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCC-----CEEEEEeCCCeEEE
Confidence            3333556779999999989999999999999987654   133443345567899999988     24555544555777


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe---------
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE---------  226 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~---------  226 (393)
                      +|.+.   ...+.  . .   ..+..+.+.++|..+++....            .....+.|..||..++.         
T Consensus       101 wd~~~~~~~~~~~--~-~---~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~~~~~~~~~~  162 (369)
T 3zwl_B          101 WDVSNGQCVATWK--S-P---VPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDSATHELTKVS  162 (369)
T ss_dssp             EETTTCCEEEEEE--C-S---SCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred             EECCCCcEEEEee--c-C---CCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCccceeecccc
Confidence            88654   22221  1 1   235688999999765553110            00112566666654321         


Q ss_pred             ---EEEEecC--ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          227 ---TKVLVSD--LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       227 ---~~~~~~~--l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                         ...+...  ......++++++++.++++ ...+.|..|++.... .....+. ...+....++++++|++.++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAG-HKDGKISKYDVSNNY-EYVDSID-LHEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             SSCSEEEECCTTCCCEEEEEECGGGCEEEEE-ETTSEEEEEETTTTT-EEEEEEE-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cceeeeccCCcCccceeEEEEcCCCCEEEEE-cCCCEEEEEECCCCc-EeEEEEe-cCCCceeEEEECCCCCEEEEec
Confidence               1111111  1256788999999876554 457899999986421 1122222 2233456788999998766554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.01  E-value=1.3e-07  Score=91.03  Aligned_cols=248  Identities=10%  Similarity=0.096  Sum_probs=149.2

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCC-cceeeeeecCCCceeeeEECCC-CCCCCceEEEEEeCCCceEEEeC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPA-DSLVHNWINTGGRPLGIAFANS-DPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~-~~~~~~~~~~~~~p~gl~~d~~-G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ...+++++++++.|.+++.+|.|..|+...... ......+.........+++.++ +     +.|+.+...+.|..+|.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD-----NVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST-----TBEEEECSSSCEEBCBT
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCC-----CEEEEEcCCCeEEEEEC
Confidence            455789999999888999999999998876211 1113333333456789999987 6     13444443445666776


Q ss_pred             Cc-e------EEEee-ccCCccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          162 NS-T------VLLTD-EAEGQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       162 ~g-~------~~l~~-~~~g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      .. .      ..... ...+ ....+..+++.++ +.++++.                 ...+.|..||..+++......
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~-----------------~~dg~v~iwd~~~~~~~~~~~  205 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMS-SVDEVISLAWNQSLAHVFASA-----------------GSSNFASIWDLKAKKEVIHLS  205 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEE-----------------SSSSCEEEEETTTTEEEEEEC
T ss_pred             CCCccccccccccccccccC-CCCCeeEEEeCCCCCcEEEEE-----------------cCCCCEEEEECCCCCcceEEe
Confidence            54 2      11111 1111 1234678999998 5666663                 345679999988776544333


Q ss_pred             C-------ccCCCcEEEcCCCCEEEEEeCCCC---eEEEEEecCCCCcceeeeeccCCCCCCeEEECC-CCCEEEEEecC
Q 016199          233 D-------LYFANGVVLSPDQTHLVYCETSMR---RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-EGHYLIALATE  301 (393)
Q Consensus       233 ~-------l~~~ngi~~s~dg~~l~v~~~~~~---ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~~~  301 (393)
                      .       ......+++++++..++++....+   .|..|++...+. ....+..........+++++ +|++.++....
T Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD  284 (416)
T ss_dssp             CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred             ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCC
Confidence            2       345678999999865666666666   899999864211 11111101223345688888 78766655533


Q ss_pred             cchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCC-EEEEEecCCCeE
Q 016199          302 FSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGD-HLYCGSVHHRGI  379 (393)
Q Consensus       302 r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g-~Lyigs~~~~~i  379 (393)
                                                        +.|..+|. +++.+..+........+.....++ .+++.+-....|
T Consensus       285 ----------------------------------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          285 ----------------------------------NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             ----------------------------------SEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred             ----------------------------------CCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence                                              45777775 577777776543222222233333 455554466778


Q ss_pred             EEEeCCCCCC
Q 016199          380 LHLDVNQHPA  389 (393)
Q Consensus       380 ~~~~~~~~~~  389 (393)
                      ..+++.....
T Consensus       331 ~iw~~~~~~~  340 (416)
T 2pm9_A          331 EVQTLQNLTN  340 (416)
T ss_dssp             EEEESCCCCC
T ss_pred             EEEEccCCCC
Confidence            8888766543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.00  E-value=8.2e-08  Score=92.21  Aligned_cols=252  Identities=8%  Similarity=-0.018  Sum_probs=138.6

Q ss_pred             EEecCccCCCceEEEecCCCEEEEEec----------CCeEEEEEcCCCCCcceeeeeec------CCCceeeeEECCCC
Q 016199           76 KVGYGVLKGPEDLLYDAHSKLIYTGCE----------DGWIKRVTLNDSPADSLVHNWIN------TGGRPLGIAFANSD  139 (393)
Q Consensus        76 ~l~~g~~~~Pe~ia~d~~g~~L~~~~~----------~g~I~~~~~~~~~~~~~~~~~~~------~~~~p~gl~~d~~G  139 (393)
                      .+..|  .+| .+++++||++||++..          ++.|..|+..+.+   ....+..      .+..|.+++++++|
T Consensus        46 ~i~~g--~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~---~~~~i~~~~~~~~~g~~p~~i~~spdg  119 (361)
T 2oiz_A           46 MVPTA--FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT---FEKEISLPPKRVQGLNYDGLFRQTTDG  119 (361)
T ss_dssp             EEECC--EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC---EEEEEEECTTBCCBCCCGGGEEECTTS
T ss_pred             EecCC--CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc---EEEEEEcCccccccCCCcceEEECCCC
Confidence            44444  468 9999999999999863          4569999987654   1222221      13569999999999


Q ss_pred             CCCCceEEEEEeCC--CceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcE
Q 016199          140 PDADRITMIVADAY--KGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGR  216 (393)
Q Consensus       140 ~~~~~~~L~v~~~~--~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~  216 (393)
                           +.||+++..  ..|..+|.+..+.+......   ..+.++.+.++| ..|++.                 ...|.
T Consensus       120 -----~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~v~~~p~~~~~~~~~-----------------~~dg~  174 (361)
T 2oiz_A          120 -----KFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWSVIPQPNRPRSFMTI-----------------CGDGG  174 (361)
T ss_dssp             -----SEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEEEEECTTSSSEEEEE-----------------ETTSS
T ss_pred             -----CEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcceeEEcCCCCeeEEEE-----------------CCCCc
Confidence                 378998753  45888887652222210110   111223445544 444442                 12233


Q ss_pred             EEEEeCCC-CeEEEEe------cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--c----cCCCCC
Q 016199          217 LLSFDPVT-KETKVLV------SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--E----TLPGLP  283 (393)
Q Consensus       217 l~~~d~~t-~~~~~~~------~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~----~l~g~P  283 (393)
                      +..++... ++.....      +.-..|..+..++|++.+++.. ..++++.+++.+....-...+.  .    .....|
T Consensus       175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p  253 (361)
T 2oiz_A          175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP  253 (361)
T ss_dssp             EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE
T ss_pred             EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe-CCCeEEEEEecCCCceecccccccCcccccccccc
Confidence            44443321 2222111      1111233444567777776655 4678999987543211111110  0    001123


Q ss_pred             Ce---EEECCCCC-EEEEEe-cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCC
Q 016199          284 DN---IRYDGEGH-YLIALA-TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMS  357 (393)
Q Consensus       284 ~~---i~~d~~G~-lwva~~-~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~  357 (393)
                      .+   ++++++|+ +|++.. .+..                         .......+.|..+|. .++++..+..+. .
T Consensus       254 ~g~~~~a~~~dg~~lyv~~~~~~~~-------------------------~~~~~~~~~v~viD~~t~~~v~~i~~~~-p  307 (361)
T 2oiz_A          254 GGYNLVGLHRASGRMYVFMHPDGKE-------------------------GTHKFPAAEIWVMDTKTKQRVARIPGRD-A  307 (361)
T ss_dssp             CCSSCEEEETTTTEEEEEEESSCCT-------------------------TCTTCCCSEEEEEETTTTEEEEEEECTT-C
T ss_pred             CCeeEEEEecCCCeEEEEEccCCCc-------------------------ccccCCCceEEEEECCCCcEEEEEecCC-e
Confidence            44   88999855 777764 1100                         000001135888986 577888887655 3


Q ss_pred             ccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          358 LISSAIKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       358 ~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                      ....+.+++.+||.++.  +.|..+|.+..
T Consensus       308 ~~ia~spdg~~l~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          308 LSMTIDQQRNLMLTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             CEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred             eEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence            32233445678998874  89999998776

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.00  E-value=6.4e-07  Score=84.67  Aligned_cols=190  Identities=13%  Similarity=0.088  Sum_probs=119.3

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEE-EeCCCceE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIV-ADAYKGLL  157 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v-~~~~~gl~  157 (393)
                      .|....-.+++++++++.|.+++.||.|..|+..++.   ....+.........+++.++|      ++++ +...+.+.
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~~~~s~~~------~~l~s~~~d~~v~  122 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSG------NYVACGGLDNICS  122 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---EEEEEECSSSCEEEEEECTTS------SEEEEEETTCEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC---cceEeecCCccEEEEEECCCC------CEEEEEeCCCeEE
Confidence            4444556679999999989999999999999987654   133333334557889999998      5444 44444455


Q ss_pred             EEeCCc----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-
Q 016199          158 KISGNS----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-  232 (393)
Q Consensus       158 ~id~~g----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-  232 (393)
                      .++...    .... ....+.. ..+..+.+.+++.+..+                  ...+.|..||..+++...... 
T Consensus       123 iw~~~~~~~~~~~~-~~~~~h~-~~v~~~~~~~~~~l~s~------------------s~d~~i~~wd~~~~~~~~~~~~  182 (340)
T 1got_B          123 IYNLKTREGNVRVS-RELAGHT-GYLSCCRFLDDNQIVTS------------------SGDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             EEETTTCSBSCEEE-EEEECCS-SCEEEEEEEETTEEEEE------------------ETTSCEEEEETTTTEEEEEECC
T ss_pred             EEECccCCCcceeE-EEecCCC-ccEEEEEECCCCcEEEE------------------ECCCcEEEEECCCCcEEEEEcC
Confidence            666532    1111 1111211 23456667777776555                  235678899988776544333 


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      .......++++|+++ ++++....+.|..|++...+  ....+. ........++++++|++.++....
T Consensus       183 h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCCCCEEEEEcCC
Confidence            334567899999996 45666678899999975321  122222 223334678899999977665533

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.99  E-value=1.8e-07  Score=91.48  Aligned_cols=181  Identities=12%  Similarity=0.032  Sum_probs=118.9

Q ss_pred             CCCceEEEecCCCEEEEEecCC---eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ce
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDG---WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GL  156 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g---~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl  156 (393)
                      ....+++++|+|+.|++++.++   .|+.++.+++.    ...+....+....+++.++|     +.|+++....   .|
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~----~~~l~~~~~~~~~~~~spdg-----~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDG-----SKLAFALSKTGSLNL  249 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEECTTS-----SEEEEEECTTSSCEE
T ss_pred             CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc----EEEeecCCCcccCEEEcCCC-----CEEEEEEecCCCceE
Confidence            3456789999999777776654   89999998765    55554444567899999999     2355443322   38


Q ss_pred             EEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          157 LKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       157 ~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      +.+|.++  ...+... .    ..+..++++|||. |+++...               .+...|+.+|..+++.+.+...
T Consensus       250 ~~~d~~~~~~~~l~~~-~----~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~  309 (415)
T 2hqs_A          250 YVMDLASGQIRQVTDG-R----SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWE  309 (415)
T ss_dssp             EEEETTTCCEEECCCC-S----SCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCS
T ss_pred             EEEECCCCCEEeCcCC-C----CcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecC
Confidence            8888765  3333211 1    2345788999996 6665310               1234799999988876655444


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          234 LYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                      ......++++|||+.|+++...  ...|+.+++++.   +...+...  .....++++++|++.+.
T Consensus       310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---~~~~l~~~--~~~~~~~~spdg~~l~~  370 (415)
T 2hqs_A          310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLSST--FLDETPSLAPNGTMVIY  370 (415)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEECCCS--SSCEEEEECTTSSEEEE
T ss_pred             CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC---CEEEecCC--CCcCCeEEcCCCCEEEE
Confidence            3455678999999988887754  358999998643   22333211  24567889999995443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.99  E-value=1.8e-07  Score=85.41  Aligned_cols=196  Identities=10%  Similarity=0.128  Sum_probs=121.5

Q ss_pred             CceeeeEECCCCCCCCceEEEEE-eCCCceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhh
Q 016199          128 GRPLGIAFANSDPDADRITMIVA-DAYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREY  204 (393)
Q Consensus       128 ~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~  204 (393)
                      ..+.||++++++     ++||+. +....|+.+|++|  ...+.  ..+  ...+.+|+++++|.+|+++          
T Consensus        27 ~~lSGla~~~~~-----~~L~aV~d~~~~I~~ld~~g~v~~~i~--l~g--~~D~EGIa~~~~g~~~vs~----------   87 (255)
T 3qqz_A           27 NNISSLTWSAQS-----NTLFSTINKPAAIVEMTTNGDLIRTIP--LDF--VKDLETIEYIGDNQFVISD----------   87 (255)
T ss_dssp             SCEEEEEEETTT-----TEEEEEEETTEEEEEEETTCCEEEEEE--CSS--CSSEEEEEECSTTEEEEEE----------
T ss_pred             cCcceeEEeCCC-----CEEEEEECCCCeEEEEeCCCCEEEEEe--cCC--CCChHHeEEeCCCEEEEEE----------
Confidence            568999999854     289975 4455699999988  22221  222  2346799999999999986          


Q ss_pred             eehhcccCCCcEEEEEeCCCC-eEE---EEecCc-cCC-----CcEEEcCCCCEEEEEeCCCC-eEEEEEecCCCCc-ce
Q 016199          205 ILDIFEGKPNGRLLSFDPVTK-ETK---VLVSDL-YFA-----NGVVLSPDQTHLVYCETSMR-RCRKFYIKGKNAG-RV  272 (393)
Q Consensus       205 ~~~~~e~~~~g~l~~~d~~t~-~~~---~~~~~l-~~~-----ngi~~s~dg~~l~v~~~~~~-ri~~~~~~g~~~~-~~  272 (393)
                             ...++++.|+.... ...   ...-.+ ..+     -|++++++++.+|++..... +|+.|+  |...+ ..
T Consensus        88 -------E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l  158 (255)
T 3qqz_A           88 -------ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNEL  158 (255)
T ss_dssp             -------TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCC
T ss_pred             -------CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCce
Confidence                   23356777754322 212   111111 123     69999999988877665444 777776  32111 12


Q ss_pred             eeeec-----cC-CCCCCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCC
Q 016199          273 EKFIE-----TL-PGLPDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDG  345 (393)
Q Consensus       273 ~~~~~-----~l-~g~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g  345 (393)
                      ....+     .. -.-+.++++|+. |++|+-....                                  ..|+.+|.+|
T Consensus       159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s----------------------------------~~L~~~d~~g  204 (255)
T 3qqz_A          159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES----------------------------------RALQEVTLVG  204 (255)
T ss_dssp             EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT----------------------------------TEEEEECTTC
T ss_pred             eeecchhhccccccCCceeEEEcCCCCeEEEEECCC----------------------------------CeEEEEcCCC
Confidence            22111     01 113678999986 6788877654                                  4699999999


Q ss_pred             cEEEEeeCCC--------CCccE-EEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          346 KPIAHYYDPE--------MSLIS-SAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       346 ~~~~~~~d~~--------~~~~~-~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                      +++..+....        ++..- .+...+|+|||.|- .|.+++|...+
T Consensus       205 ~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~~~~  253 (255)
T 3qqz_A          205 EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE-PNRFYRFTPQS  253 (255)
T ss_dssp             CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET-TTEEEEEEC--
T ss_pred             CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC-CceEEEEEecC
Confidence            9887766432        12222 33445689999984 46999987543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.98  E-value=1.9e-08  Score=91.72  Aligned_cols=186  Identities=13%  Similarity=0.148  Sum_probs=120.1

Q ss_pred             eeeEECCCCCCCCceEEEEEeCCC-ceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhee
Q 016199          131 LGIAFANSDPDADRITMIVADAYK-GLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYIL  206 (393)
Q Consensus       131 ~gl~~d~~G~~~~~~~L~v~~~~~-gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~  206 (393)
                      .||.++ ++      .||+++... .|.++|++.   ...+   .+..  .|..+++++. ++||+.+            
T Consensus        58 qGL~~~-~~------~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~--~FgeGit~~g-~~Ly~lt------------  112 (268)
T 3nok_A           58 QGLVFH-QG------HFFESTGHQGTLRQLSLESAQPVWME---RLGN--IFAEGLASDG-ERLYQLT------------  112 (268)
T ss_dssp             EEEEEE-TT------EEEEEETTTTEEEECCSSCSSCSEEE---ECTT--CCEEEEEECS-SCEEEEE------------
T ss_pred             ceEEEE-CC------EEEEEcCCCCEEEEEECCCCcEEeEE---CCCC--cceeEEEEeC-CEEEEEE------------
Confidence            689998 47      999998754 477888765   2222   2222  2345677763 4899986            


Q ss_pred             hhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC-CcceeeeeccCC-CCCC
Q 016199          207 DIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGRVEKFIETLP-GLPD  284 (393)
Q Consensus       207 ~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~~~~~~~~l~-g~P~  284 (393)
                           -..+.++.||+++.+...-...  .+.|..+++|++.||+++ +.++|+.+|.+..+ .+..++-....+ .+++
T Consensus       113 -----w~~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          113 -----WTEGLLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             -----SSSCEEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             -----ccCCEEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence                 2356899999988765433222  244566668899999998 58899999976432 111111111111 1334


Q ss_pred             eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--------
Q 016199          285 NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--------  355 (393)
Q Consensus       285 ~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--------  355 (393)
                      .+... +|++|++.+..                                  +.|.++|+ +|+++..+....        
T Consensus       185 eLe~~-dG~lyanvw~s----------------------------------~~I~vIDp~TG~V~~~Idl~~L~~~~~~~  229 (268)
T 3nok_A          185 ELECA-NGVIYANIWHS----------------------------------SDVLEIDPATGTVVGVIDASALTRAVAGQ  229 (268)
T ss_dssp             EEEEE-TTEEEEEETTC----------------------------------SEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred             ccEEe-CCEEEEEECCC----------------------------------CeEEEEeCCCCcEEEEEECCCCccccccc
Confidence            55554 78999988754                                  46999998 688888876431        


Q ss_pred             ----CCccEEE--EEeCCEEEEEecCCCeEEEEeC
Q 016199          356 ----MSLISSA--IKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       356 ----~~~~~~~--~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                          ......+  .+..++||+++-.-+.+.++.+
T Consensus       230 ~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          230 VTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             CCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             ccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence                1111222  2235899999999999998876

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.98  E-value=5.2e-08  Score=91.62  Aligned_cols=159  Identities=13%  Similarity=0.138  Sum_probs=103.9

Q ss_pred             CCceeeeEECC-CCCCCCceEEEEEeCC-CceEEEeCCc--eEEEe-eccC--CccccccccEEE---cCCCcEEE-EeC
Q 016199          127 GGRPLGIAFAN-SDPDADRITMIVADAY-KGLLKISGNS--TVLLT-DEAE--GQKFKLTDGVDV---ADDGMIYF-TDA  195 (393)
Q Consensus       127 ~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~~id~~g--~~~l~-~~~~--g~~~~~~~~l~~---d~dG~l~~-td~  195 (393)
                      ..-|.++++|+ +|      ++|+++.+ +.|..+++++  .+.+. ....  +.+...+.+|.+   |++|+||+ .+.
T Consensus        12 ~~yPE~~~wd~~~g------~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQ------VFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             TCCCSCEEEETTTT------EEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             ccCCcCccCcCCCC------EEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            34688999976 67      99999975 5599999974  33331 1111  333345679999   79999998 453


Q ss_pred             CCccchhhheehhcccCCCcEEEEEeCC---CCeEEEEec--------------CccCCCcEEEcCCCCEEEEEeCCC-C
Q 016199          196 SNKYYLREYILDIFEGKPNGRLLSFDPV---TKETKVLVS--------------DLYFANGVVLSPDQTHLVYCETSM-R  257 (393)
Q Consensus       196 ~~~~~~~~~~~~~~e~~~~g~l~~~d~~---t~~~~~~~~--------------~l~~~ngi~~s~dg~~l~v~~~~~-~  257 (393)
                      +..+....     ..-++...|++||+.   +++.....+              ....+|+++++++| ..||+++.. +
T Consensus        86 ~~af~~~g-----~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~  159 (334)
T 2p9w_A           86 AKSFNFAD-----QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMP  159 (334)
T ss_dssp             TTTTCTTS-----CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSC
T ss_pred             cccccccc-----cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCC
Confidence            22221100     001235679999988   565433222              12358999999999 699999999 9


Q ss_pred             eEEEEEecCCCCcceeeee-ccCC----CCCCeEEECCCCCEEEEEec
Q 016199          258 RCRKFYIKGKNAGRVEKFI-ETLP----GLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       258 ri~~~~~~g~~~~~~~~~~-~~l~----g~P~~i~~d~~G~lwva~~~  300 (393)
                      .|+|++.+|..   ...+. +..+    -.++||+++++|+++++...
T Consensus       160 ~I~rV~pdG~~---~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          160 AIARVSADGKT---VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             EEEEECTTSCC---EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             eEEEEeCCCCE---EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence            99999988752   22221 1111    13789999999997777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.97  E-value=6.9e-08  Score=87.95  Aligned_cols=150  Identities=15%  Similarity=0.161  Sum_probs=106.1

Q ss_pred             CCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           84 GPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ..|+++++  +++||+.+. ++.++.+|+++.+   ....+. ..+...|++.|. +      .||+++....|..+|++
T Consensus        88 FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~---~~~ti~-~~~eG~glt~dg-~------~L~~SdGs~~i~~iDp~  154 (262)
T 3nol_A           88 FGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR---QVRSFN-YDGEGWGLTHND-Q------YLIMSDGTPVLRFLDPE  154 (262)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETTTCC---EEEEEE-CSSCCCCEEECS-S------CEEECCSSSEEEEECTT
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECccCc---EEEEEE-CCCCceEEecCC-C------EEEEECCCCeEEEEcCC
Confidence            34777776  457999886 7789999998765   133343 344556777663 4      79999866669999998


Q ss_pred             ce---EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--C----
Q 016199          163 ST---VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--D----  233 (393)
Q Consensus       163 g~---~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~----  233 (393)
                      +.   ..+.-...+.++..+|.+... +|.||+...                 .+..|.++|++++++....+  +    
T Consensus       155 T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w-----------------~~~~I~vIDp~tG~V~~~Id~~~L~~~  216 (262)
T 3nol_A          155 SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW-----------------QTNKIVRIDPETGKVTGIIDLNGILAE  216 (262)
T ss_dssp             TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-----------------TSSEEEEECTTTCBEEEEEECTTGGGG
T ss_pred             CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc-----------------cCCeEEEEECCCCcEEEEEECCcCccc
Confidence            62   222222345666677778776 789999862                 24589999999998765432  1    


Q ss_pred             -------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          234 -------LYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       234 -------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                             ...+||||++++++.+||+.-.=-+++...+
T Consensus       217 ~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          217 AGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             SCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             cccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence                   2357999999999999999876667777665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.97  E-value=6.5e-08  Score=93.55  Aligned_cols=232  Identities=15%  Similarity=0.061  Sum_probs=136.4

Q ss_pred             ecCCCEEEEEec-----CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC----------CCc
Q 016199           91 DAHSKLIYTGCE-----DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA----------YKG  155 (393)
Q Consensus        91 d~~g~~L~~~~~-----~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~----------~~g  155 (393)
                      .|+++++|+.+.     ++.|..+|..+.+    +......+..|. ++++++|     +.+|+++.          .+.
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~----v~~~I~vG~~P~-va~spDG-----~~lyVan~~~~r~~~G~~~~~  110 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGR----VIGMIDGGFLPN-PVVADDG-----SFIAHASTVFSRIARGERTDY  110 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTE----EEEEEEECSSCE-EEECTTS-----SCEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCe----EEEEEECCCCCc-EEECCCC-----CEEEEEcccccccccCCCCCE
Confidence            578889999876     5689999998765    444445567786 9999999     36999974          233


Q ss_pred             eEEEeCCceEEEee-ccCC-c---cccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          156 LLKISGNSTVLLTD-EAEG-Q---KFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       156 l~~id~~g~~~l~~-~~~g-~---~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                      |..+|..+.+.... ...+ .   ....++++++++|| .+|+++.                ...+.|..+|..++++..
T Consensus       111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~----------------~~~~~VsVID~~t~~vv~  174 (386)
T 3sjl_D          111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF----------------SPAPAVGVVDLEGKAFKR  174 (386)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC----------------SSSCEEEEEETTTTEEEE
T ss_pred             EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc----------------CCCCeEEEEECCCCcEEE
Confidence            88889876222221 1111 1   12358899999999 6999862                124579999999887643


Q ss_pred             Eec--C--ccCCCc----EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee-eccCCCCCCeEEEC-CCCCEEEEEe
Q 016199          230 LVS--D--LYFANG----VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF-IETLPGLPDNIRYD-GEGHYLIALA  299 (393)
Q Consensus       230 ~~~--~--l~~~ng----i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~-~~~l~g~P~~i~~d-~~G~lwva~~  299 (393)
                      -..  +  ..+|.|    +++++||+.+|+.-...+++..  ..      ...+ .+..+ ...+..++ ++|++|+.+.
T Consensus       175 tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~--~~------~~~~~~~~~~-~~~~~~~~~~dG~~~~vs~  245 (386)
T 3sjl_D          175 MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI--TH------TEVFHPEDEF-LINHPAYSQKAGRLVWPTY  245 (386)
T ss_dssp             EEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE--EE------CCCCSCTTSC-BCSCCEEETTTTEEEEEBT
T ss_pred             EEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEE--ee------cceecccccc-ccccceeEcCCCcEEEEeC
Confidence            221  1  123434    3667777666665433345421  10      0111 11111 22334543 6787554444


Q ss_pred             cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEE---EEee---C--------CCCCccEEEEEe
Q 016199          300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPI---AHYY---D--------PEMSLISSAIKI  365 (393)
Q Consensus       300 ~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~---~~~~---d--------~~~~~~~~~~~~  365 (393)
                      .                                   +.|+.+|..+...   ..+.   +        +.-.....+..+
T Consensus       246 ~-----------------------------------g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~  290 (386)
T 3sjl_D          246 T-----------------------------------GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA  290 (386)
T ss_dssp             T-----------------------------------SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred             C-----------------------------------CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence            2                                   3578888765432   2221   1        111112233445


Q ss_pred             CCEEEEEec---------CCCeEEEEeCCCCCCCCC
Q 016199          366 GDHLYCGSV---------HHRGILHLDVNQHPARAI  392 (393)
Q Consensus       366 ~g~Lyigs~---------~~~~i~~~~~~~~~~~~~  392 (393)
                      +++||+...         .++.|+.+|++....+++
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~  326 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK  326 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE
Confidence            689999854         136899999988776654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.95  E-value=1.8e-07  Score=92.85  Aligned_cols=172  Identities=15%  Similarity=0.174  Sum_probs=106.9

Q ss_pred             ceEEecCccCCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCcceeee----eec-----CCCceeeeEECCC----C
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSLVHN----WIN-----TGGRPLGIAFANS----D  139 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~~~~----~~~-----~~~~p~gl~~d~~----G  139 (393)
                      ++.+.++ +..|.+|++.|+|+ +||++...|+|++++.++......+..    +..     ..+.+++|+++++    |
T Consensus         6 v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~   84 (463)
T 2wg3_C            6 IQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG   84 (463)
T ss_dssp             EEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred             EEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence            3555554 78999999999985 699999999999997654310000111    111     0246899999985    8


Q ss_pred             CCCCceEEEEEeCC-------------CceEEEeCC---------c-eEEEeeccCCccccccccEEEcCCCcEEEEeCC
Q 016199          140 PDADRITMIVADAY-------------KGLLKISGN---------S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDAS  196 (393)
Q Consensus       140 ~~~~~~~L~v~~~~-------------~gl~~id~~---------g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~  196 (393)
                            .|||+.+.             ..|.++..+         + .+++..........+...|++++||.|||+...
T Consensus        85 ------~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           85 ------KLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             ------EEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             ------EEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence                  89998542             245555321         1 223322111112234567999999999998543


Q ss_pred             Cccch--hhheehhcccCCCcEEEEEeCCCC--------------------eEEEEecCccCCCcEEEcCC-----CC-E
Q 016199          197 NKYYL--REYILDIFEGKPNGRLLSFDPVTK--------------------ETKVLVSDLYFANGVVLSPD-----QT-H  248 (393)
Q Consensus       197 ~~~~~--~~~~~~~~e~~~~g~l~~~d~~t~--------------------~~~~~~~~l~~~ngi~~s~d-----g~-~  248 (393)
                      .....  .+...+  .....|.|+|+|++++                    ..+.++.++..|.|++++++     |+ +
T Consensus       159 ~~~~~~~~~~~q~--~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~  236 (463)
T 2wg3_C          159 GMITLDDMEEMDG--LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLT  236 (463)
T ss_dssp             TTCCHHHHHHCTT--CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEE
T ss_pred             CCCCCCccccccC--cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceE
Confidence            22110  111111  1234688999999863                    23567888999999999997     33 5


Q ss_pred             EEEEeC
Q 016199          249 LVYCET  254 (393)
Q Consensus       249 l~v~~~  254 (393)
                      +|.+|.
T Consensus       237 ~~~~D~  242 (463)
T 2wg3_C          237 ILCSDS  242 (463)
T ss_dssp             EEEECC
T ss_pred             EEeccc
Confidence            677775

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.95  E-value=2.4e-07  Score=88.55  Aligned_cols=188  Identities=11%  Similarity=0.068  Sum_probs=124.0

Q ss_pred             CCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECC-CCCCCCceEEEEEeCCCceE
Q 016199           83 KGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFAN-SDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        83 ~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~  157 (393)
                      ....++++++++ +.|.+++.+|.|..|+..++.    .....   .......++++.+ ++     +.|+.+...+.|.
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~-----~~l~s~~~d~~i~  144 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN----KTSFIQGMGPGDAITGMKFNQFNT-----NQLFVSSIRGATT  144 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT----CEEEECCCSTTCBEEEEEEETTEE-----EEEEEEETTTEEE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc----cceeeecCCcCCceeEEEeCCCCC-----CEEEEEeCCCEEE
Confidence            456679999998 789999999999999998654    22222   2345678999998 55     1345554455577


Q ss_pred             EEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc
Q 016199          158 KISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY  235 (393)
Q Consensus       158 ~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~  235 (393)
                      .+|.++  ...+.. ..+. ...+..+++.++|.++++.                 ...+.|..||........+.....
T Consensus       145 iwd~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~~~~~~~~h~~  205 (383)
T 3ei3_B          145 LRDFSGSVIQVFAK-TDSW-DYWYCCVDVSVSRQMLATG-----------------DSTGRLLLLGLDGHEIFKEKLHKA  205 (383)
T ss_dssp             EEETTSCEEEEEEC-CCCS-SCCEEEEEEETTTTEEEEE-----------------ETTSEEEEEETTSCEEEEEECSSS
T ss_pred             EEECCCCceEEEec-cCCC-CCCeEEEEECCCCCEEEEE-----------------CCCCCEEEEECCCCEEEEeccCCC
Confidence            778766  222221 1111 1235688999999766553                 345689999986656666655556


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeeccCCCCCCeEEECC-CCCEEEEEe
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA-GRVEKFIETLPGLPDNIRYDG-EGHYLIALA  299 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~-~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~  299 (393)
                      ....++++++++.++++....+.|..|++...+. +...... ...+....+++++ +|++.++..
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence            6788999999985666677788999999864221 2222222 2333456788999 998666544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.94  E-value=9.1e-07  Score=86.43  Aligned_cols=218  Identities=8%  Similarity=0.044  Sum_probs=129.7

Q ss_pred             CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccc
Q 016199          104 GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKL  178 (393)
Q Consensus       104 g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~  178 (393)
                      +.|+.++.+++.    ...+.........+++.++|     +.|+.+....   .|+.+|.++  ...+. ...    ..
T Consensus       159 ~~i~i~d~~g~~----~~~l~~~~~~v~~~~~Spdg-----~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~----~~  224 (415)
T 2hqs_A          159 YELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAVRQVA-SFP----RH  224 (415)
T ss_dssp             EEEEEEETTSCS----CEEEEEESSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEETTTCCEEEEE-CCS----SC
T ss_pred             ceEEEEcCCCCC----CEEEeCCCCcceeeEEcCCC-----CEEEEEEecCCCcEEEEEECCCCcEEEee-cCC----Cc
Confidence            689999988654    44444444567899999999     2455554443   588888765  33332 111    13


Q ss_pred             cccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC
Q 016199          179 TDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR  257 (393)
Q Consensus       179 ~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~  257 (393)
                      +..++++|||. |+++...               .+...|+.+|..+++...+.........++++|||+.|+++....+
T Consensus       225 ~~~~~~spdg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g  289 (415)
T 2hqs_A          225 NGAPAFSPDGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG  289 (415)
T ss_dssp             EEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             ccCEEEcCCCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCC
Confidence            56789999996 6555311               2245699999988887666554445677899999998887764333


Q ss_pred             --eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCC
Q 016199          258 --RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSS  335 (393)
Q Consensus       258 --ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  335 (393)
                        +|+.+++++.+   ...+. ........++++++|++.+......                               ..
T Consensus       290 ~~~i~~~d~~~~~---~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~-------------------------------g~  334 (415)
T 2hqs_A          290 RPQVYKVNINGGA---PQRIT-WEGSQNQDADVSSDGKFMVMVSSNG-------------------------------GQ  334 (415)
T ss_dssp             SCEEEEEETTSSC---CEECC-CSSSEEEEEEECTTSSEEEEEEECS-------------------------------SC
T ss_pred             CcEEEEEECCCCC---EEEEe-cCCCcccCeEECCCCCEEEEEECcC-------------------------------Cc
Confidence              78888876432   22222 1222344678899999655443210                               01


Q ss_pred             ceEEEECCCCcEEEEeeCCCCCccEEE-EEeCCEEEEEecCCC--eEEEEeCCC
Q 016199          336 SGVFIVDLDGKPIAHYYDPEMSLISSA-IKIGDHLYCGSVHHR--GILHLDVNQ  386 (393)
Q Consensus       336 ~~v~~~d~~g~~~~~~~d~~~~~~~~~-~~~~g~Lyigs~~~~--~i~~~~~~~  386 (393)
                      ..|..+|.++.....+.... ...+.. .+++..|++++....  .|..++++.
T Consensus       335 ~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          335 QHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             EEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence            34777777654444444322 111122 223455666664443  567777653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.94  E-value=6.1e-07  Score=86.04  Aligned_cols=236  Identities=12%  Similarity=0.083  Sum_probs=142.1

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ...+++++++++.|++++.+|.|..|+..+..    ...+.........+++.++|     +.|+++...+.|..++...
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGAL----LNVLNFHRAPIVSVKWNKDG-----THIISMDVENVTILWNVIS  180 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCE----EEEECCCCSCEEEEEECTTS-----SEEEEEETTCCEEEEETTT
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe----eeeccCCCccEEEEEECCCC-----CEEEEEecCCeEEEEECCC
Confidence            45678999999999999999999999955433    44444445667899999988     2466666566677888654


Q ss_pred             ---eEEEeeccCCc----------cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          164 ---TVLLTDEAEGQ----------KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       164 ---~~~l~~~~~g~----------~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                         ...+.......          ....+..+.+.+++.++++                  ...+.|+.||..+++....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~i~~~d~~~~~~~~~  242 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP------------------GPKGAIFVYQITEKTPTGK  242 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEE------------------CGGGCEEEEETTCSSCSEE
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEE------------------cCCCeEEEEEcCCCceeee
Confidence               22221110000          0011567778888877666                  3456799999877654332


Q ss_pred             -ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhh
Q 016199          231 -VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLA  309 (393)
Q Consensus       231 -~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~  309 (393)
                       .........++++++++.++.+ ...+.|..|++...+  ....+. ........++++++| ++++....        
T Consensus       243 ~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d--------  309 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNKLLLSA-SDDGTLRIWHGGNGN--SQNCFY-GHSQSIVSASWVGDD-KVISCSMD--------  309 (425)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEECSSSBS--CSEEEC-CCSSCEEEEEEETTT-EEEEEETT--------
T ss_pred             eccCCCceEEEEECCCCCEEEEE-cCCCEEEEEECCCCc--cceEec-CCCccEEEEEECCCC-EEEEEeCC--------
Confidence             2233446789999999866554 457889999875322  122221 223334668888888 44444322        


Q ss_pred             hcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeC-CEEEEEecCCCeEEEEeCCC
Q 016199          310 YRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIG-DHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       310 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~-g~Lyigs~~~~~i~~~~~~~  386 (393)
                                                +.|..+|. +++.+..+........+.....+ ..|+.++ ....|..+++..
T Consensus       310 --------------------------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~  361 (425)
T 1r5m_A          310 --------------------------GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF-MDGQVNVYDLKK  361 (425)
T ss_dssp             --------------------------SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE-TTSCEEEEECHH
T ss_pred             --------------------------CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Confidence                                      45777775 46666666543322222222233 4555554 455677777643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.94  E-value=4.3e-09  Score=101.53  Aligned_cols=250  Identities=8%  Similarity=-0.127  Sum_probs=143.5

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEe----------cCCeEEEEEcCCCCCcceeeeeecCC--------CceeeeEE
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGC----------EDGWIKRVTLNDSPADSLVHNWINTG--------GRPLGIAF  135 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~----------~~g~I~~~~~~~~~~~~~~~~~~~~~--------~~p~gl~~  135 (393)
                      ..++..|  ..| ++++++||+.+|++.          .++.|..||+.+.+    .......+        ..|+++++
T Consensus        59 ~~~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~----vv~~I~v~~~~~~~~g~~P~~ia~  131 (368)
T 1mda_H           59 LGHSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL----PIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             EEEEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----EEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             EEEEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC----EEEEEECCCccccccCCCcceEEE
Confidence            3445556  358 899999999999987          25679999998765    33222222        46999999


Q ss_pred             CCCCCCCCceEEEEEeCC--CceEE--EeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcc
Q 016199          136 ANSDPDADRITMIVADAY--KGLLK--ISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFE  210 (393)
Q Consensus       136 d~~G~~~~~~~L~v~~~~--~gl~~--id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e  210 (393)
                      ++||     +.+||++..  ..+..  +|......+.  ..+       .+.+.++| +.|++.                
T Consensus       132 SpDG-----k~lyVan~~~~~~v~V~~iD~~tv~~i~--v~~-------~~~~~p~g~~~~~~~----------------  181 (368)
T 1mda_H          132 CASS-----ACLLFFLFGSSAAAGLSVPGASDDQLTK--SAS-------CFHIHPGAAATHYLG----------------  181 (368)
T ss_dssp             CTTS-----SCEEEEECSSSCEEEEEETTTEEEEEEE--CSS-------CCCCEEEETTEEECC----------------
T ss_pred             cCCC-----CEEEEEccCCCCeEEEEEEchhhceEEE--CCC-------ceEEccCCCeEEEEE----------------
Confidence            9999     369999753  23556  6764421221  111       11223444 566653                


Q ss_pred             cCCCcEEEEEeCCC-----CeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-c---
Q 016199          211 GKPNGRLLSFDPVT-----KETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-E---  277 (393)
Q Consensus       211 ~~~~g~l~~~d~~t-----~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~---  277 (393)
                       ...+++..+|.++     ++....    ..--..|.  + +++++.+|+...  +.++.+|..+........+. .   
T Consensus       182 -~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~  255 (368)
T 1mda_H          182 -SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             -CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             -cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEecccc
Confidence             3345667777765     322110    00012233  3 566667666665  88999998542111111110 0   


Q ss_pred             --cCCCCCCe---EEECCCCC-EEEEEe-cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEE
Q 016199          278 --TLPGLPDN---IRYDGEGH-YLIALA-TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIA  349 (393)
Q Consensus       278 --~l~g~P~~---i~~d~~G~-lwva~~-~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~  349 (393)
                        .....|.+   ++++++|+ +||++. ..+..                         .  ...+++..+|. .+++++
T Consensus       256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~-------------------------~--~~~~~~~ViD~~t~~vv~  308 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC-------------------------L--AAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT-------------------------T--SCEEEEEEEESSSCCEEE
T ss_pred             ccccccccCcceeeEEcCCCCEEEEEeccccCcc-------------------------c--ccCCCEEEEECCCCeEEE
Confidence              00113444   88888876 888876 20100                         0  00034668886 467777


Q ss_pred             EeeCCCCCccEEEEEeCCEEEEEec-CCCeEEEEeCCCCCCCCCC
Q 016199          350 HYYDPEMSLISSAIKIGDHLYCGSV-HHRGILHLDVNQHPARAII  393 (393)
Q Consensus       350 ~~~d~~~~~~~~~~~~~g~Lyigs~-~~~~i~~~~~~~~~~~~~~  393 (393)
                      .+..+.......+..++.++|+++. .++.|..+|+.....+++|
T Consensus       309 ~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          309 PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             CCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             EEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence            7665432111122334457999988 6899999999888776654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=7.1e-07  Score=87.33  Aligned_cols=202  Identities=9%  Similarity=0.037  Sum_probs=119.3

Q ss_pred             cCCCEEEEEec-CCeEEEEEcCCCCC-cceeeeee------cCC-CceeeeEECCCCCCCCceEEEEEeCC-------Cc
Q 016199           92 AHSKLIYTGCE-DGWIKRVTLNDSPA-DSLVHNWI------NTG-GRPLGIAFANSDPDADRITMIVADAY-------KG  155 (393)
Q Consensus        92 ~~g~~L~~~~~-~g~I~~~~~~~~~~-~~~~~~~~------~~~-~~p~gl~~d~~G~~~~~~~L~v~~~~-------~g  155 (393)
                      .+++.||+... +++|+.+|..+... .+..+.+.      ..+ .+|+++...++|       +||+..+       ++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-------i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-------IYISALGNEEGEGPGG  165 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-------EEEEEEEETTSCSCCE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-------EEEEcCCCcCCCCCCe
Confidence            67788998764 77999999764321 12233331      122 379999999988       7776443       46


Q ss_pred             eEEEeCCceEEEeec-cCCccccccccEEEcCCCcEEEEeC-CCccch-hhheehhcccCCCcEEEEEeCCCCeEEEEe-
Q 016199          156 LLKISGNSTVLLTDE-AEGQKFKLTDGVDVADDGMIYFTDA-SNKYYL-REYILDIFEGKPNGRLLSFDPVTKETKVLV-  231 (393)
Q Consensus       156 l~~id~~g~~~l~~~-~~g~~~~~~~~l~~d~dG~l~~td~-~~~~~~-~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-  231 (393)
                      |..+|.++.+++... .++.+..+..++.+.++++.+++.. +.-..+ ..|..+.++.....+|..||..+++..... 
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            999998763333322 2223333455788899997666641 100000 001111111133568999999877543322 


Q ss_pred             cC--ccCCCcEEE--cCCCCEEEEEeC-----CCCeEEEEEecCCCCcceee-------eeccC----------CCCCCe
Q 016199          232 SD--LYFANGVVL--SPDQTHLVYCET-----SMRRCRKFYIKGKNAGRVEK-------FIETL----------PGLPDN  285 (393)
Q Consensus       232 ~~--l~~~ngi~~--s~dg~~l~v~~~-----~~~ri~~~~~~g~~~~~~~~-------~~~~l----------~g~P~~  285 (393)
                      -+  -..|..|.+  +||+++.|++..     ..+.|++|+.++.......+       +...+          ++.|.+
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            11  134667766  999999999998     88899887765321111111       00011          256889


Q ss_pred             EEECCCCC-EEEEEec
Q 016199          286 IRYDGEGH-YLIALAT  300 (393)
Q Consensus       286 i~~d~~G~-lwva~~~  300 (393)
                      |.+++||+ +||+...
T Consensus       326 I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          326 IDISLDDKFLYLSLWG  341 (462)
T ss_dssp             EEECTTSCEEEEEETT
T ss_pred             EEECCCCCEEEEEeCC
Confidence            99999999 6676654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.93  E-value=1.1e-06  Score=82.57  Aligned_cols=186  Identities=12%  Similarity=0.061  Sum_probs=115.8

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-----CceE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-----KGLL  157 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-----~gl~  157 (393)
                      ....+++++++++.|++++.+|.|..|+..++.   ....+. ....+..+++.++|     +.++++...     +.|.
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~-~~~~v~~~~~~~~~-----~~l~~~~~~~~~~~g~i~  145 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ---CVATWK-SPVPVKRVEFSPCG-----NYFLAILDNVMKNPGSIN  145 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---EEEEEE-CSSCEEEEEECTTS-----SEEEEEECCBTTBCCEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEee-cCCCeEEEEEccCC-----CEEEEecCCccCCCCEEE
Confidence            445678999999989999999999999988665   133333 45678899999998     244454433     4466


Q ss_pred             EEeCCc---eEEEee-cc------CC-ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-C
Q 016199          158 KISGNS---TVLLTD-EA------EG-QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-K  225 (393)
Q Consensus       158 ~id~~g---~~~l~~-~~------~g-~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-~  225 (393)
                      .++.+.   ...+.. ..      .. .....+..++++++|..+++.                 ...+.|..||..+ +
T Consensus       146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~~  208 (369)
T 3zwl_B          146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-----------------HKDGKISKYDVSNNY  208 (369)
T ss_dssp             EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-----------------ETTSEEEEEETTTTT
T ss_pred             EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-----------------cCCCEEEEEECCCCc
Confidence            665422   111110 00      00 001145678899998655542                 3457899999886 3


Q ss_pred             eEE-EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          226 ETK-VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       226 ~~~-~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      +.. .+.........+++++|++.++.+ +..+.|..|++...+  ....+.  .......++++++|++.+...
T Consensus       209 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          209 EYVDSIDLHEKSISDMQFSPDLTYFITS-SRDTNSFLVDVSTLQ--VLKKYE--TDCPLNTAVITPLKEFIILGG  278 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC--EEEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred             EeEEEEecCCCceeEEEECCCCCEEEEe-cCCceEEEEECCCCc--eeeeec--CCCCceeEEecCCCceEEEee
Confidence            433 333334556889999999876555 457899999985321  122222  223345688899998665544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.93  E-value=1.5e-07  Score=84.85  Aligned_cols=152  Identities=9%  Similarity=0.044  Sum_probs=107.4

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ...|+++++  +++||+.+. ++.++.+|.++.+   ....+. ..+.+.|++.|. +      +||+++....|..+|+
T Consensus        65 ~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~---~~~ti~-~~~~Gwglt~dg-~------~L~vSdgs~~l~~iDp  131 (243)
T 3mbr_X           65 YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT---PRARFR-YPGEGWALTSDD-S------HLYMSDGTAVIRKLDP  131 (243)
T ss_dssp             CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE---EEEEEE-CSSCCCEEEECS-S------CEEEECSSSEEEEECT
T ss_pred             cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc---EEEEEe-CCCCceEEeeCC-C------EEEEECCCCeEEEEeC
Confidence            345777776  457998875 7789999988754   133343 345567777653 4      7999987777999999


Q ss_pred             Cce---EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--C---
Q 016199          162 NST---VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--D---  233 (393)
Q Consensus       162 ~g~---~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~---  233 (393)
                      ++.   ..+.-...+.+..++|.+... +|.||+...                 .+..|.++|++++++....+  +   
T Consensus       132 ~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw-----------------~s~~I~vIDp~tG~V~~~idl~~l~~  193 (243)
T 3mbr_X          132 DTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW-----------------LTSRIARIDPASGKVVAWIDLQALVP  193 (243)
T ss_dssp             TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-----------------TTTEEEEECTTTCBEEEEEECGGGST
T ss_pred             CCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC-----------------CCCeEEEEECCCCCEEEEEECCcCcc
Confidence            872   222222345566677787766 889998862                 23579999999998765422  1   


Q ss_pred             ---------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          234 ---------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       234 ---------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                               ...+||||++++++.+||+.-.=.+++...+.
T Consensus       194 ~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          194 DADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             TTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             ccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence                     23579999999999999998766677777664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.93  E-value=1.3e-07  Score=95.58  Aligned_cols=196  Identities=14%  Similarity=0.146  Sum_probs=121.4

Q ss_pred             CCCEEEEEec-CCeEEEEEcCCCCCcceeeee--ecCCCceeeeEE-C-CCCCCCCceEEEEEeC---------------
Q 016199           93 HSKLIYTGCE-DGWIKRVTLNDSPADSLVHNW--INTGGRPLGIAF-A-NSDPDADRITMIVADA---------------  152 (393)
Q Consensus        93 ~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~--~~~~~~p~gl~~-d-~~G~~~~~~~L~v~~~---------------  152 (393)
                      ||+.||+... +++|.++++++.+    ...+  .+.+..|+|+++ . +++     +.+|+++.               
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~----~~~ii~ip~g~~phg~~~~~~p~~-----~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMK----CDAILEIPNAKGIHGLRPQKWPRS-----NYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTE----EEEEEECSSCCSEEEEEECCSSBC-----SEEEEEECSCEESSCSSSSTTCG
T ss_pred             CCCEEEEEcCCCCEEEEEECCCce----EeeEEeCCCCCCCcceeeeecCCC-----cEEEEecccccccCCCCcccccc
Confidence            7889999876 6689999999865    3332  133567999998 4 666     26777741               


Q ss_pred             --CCc-eEEEeCCceEEEee-ccCCccccccccEEEcCCC-cEEEEeCCCccc---------hhhhe---------ehhc
Q 016199          153 --YKG-LLKISGNSTVLLTD-EAEGQKFKLTDGVDVADDG-MIYFTDASNKYY---------LREYI---------LDIF  209 (393)
Q Consensus       153 --~~g-l~~id~~g~~~l~~-~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~---------~~~~~---------~~~~  209 (393)
                        +.+ +..+|.+..++... ...+    .++++++++|| .+|+++..+...         ..+++         ..+-
T Consensus       171 ~~~~~~vtvID~~t~~v~~qI~Vgg----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVAWQVLVSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             GGEEEEEEEEETTTTEEEEEEEESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             cccCceEEEEECCCCeEEEEEEeCC----CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence              122 55567665322221 1222    36789999998 677776543211         00000         0000


Q ss_pred             ccC--CCcEEEEEeCCC--CeE-EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC------Cc-ceeeeec
Q 016199          210 EGK--PNGRLLSFDPVT--KET-KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN------AG-RVEKFIE  277 (393)
Q Consensus       210 e~~--~~g~l~~~d~~t--~~~-~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~------~~-~~~~~~~  277 (393)
                      .+.  .-++|-.+|..+  ++. ......-..|+|+.++|||+++|+++...+++..|+++..+      .. ...+..+
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             CCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence            010  014588899886  332 22232335799999999999999999999999999986321      00 0111221


Q ss_pred             c-CCCCCCeEEECCCCCEEEEEecC
Q 016199          278 T-LPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       278 ~-l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      - ....|..+++|++|+.|+++.-.
T Consensus       327 v~vG~gP~h~aF~~dG~aY~t~~ld  351 (595)
T 1fwx_A          327 PELGLGPLHTAFDGRGNAYTSLFLD  351 (595)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTT
T ss_pred             cCCCCCcceEEECCCCeEEEEEecC
Confidence            1 22359999999999989887754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.93  E-value=1.8e-06  Score=83.00  Aligned_cols=234  Identities=14%  Similarity=0.097  Sum_probs=147.7

Q ss_pred             CCCceEEEe-cCCCEEEEEec---CC---eEEEEEcCCCCC----ccee-eeeec--CC---CceeeeEECCCCCCCCce
Q 016199           83 KGPEDLLYD-AHSKLIYTGCE---DG---WIKRVTLNDSPA----DSLV-HNWIN--TG---GRPLGIAFANSDPDADRI  145 (393)
Q Consensus        83 ~~Pe~ia~d-~~g~~L~~~~~---~g---~I~~~~~~~~~~----~~~~-~~~~~--~~---~~p~gl~~d~~G~~~~~~  145 (393)
                      ..|.++++| .+| ++|++..   +|   .+..++.++..+    .... +.|..  .+   -.+.++..|+.|      
T Consensus        26 ~~P~gv~vd~~~g-RiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~------   98 (381)
T 3q6k_A           26 MISTAFAYDAEGE-KLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCR------   98 (381)
T ss_dssp             CCCCEEEEETTTT-EEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTC------
T ss_pred             cceeeeeeecCCC-cEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCC------
Confidence            468889995 676 5998874   22   466666532100    0114 55543  12   247899999999      


Q ss_pred             EEEEEeCCC----------------ceEEEeCCce--EEEee-cc---CCccccccccEEEc-C-------CCcEEEEeC
Q 016199          146 TMIVADAYK----------------GLLKISGNST--VLLTD-EA---EGQKFKLTDGVDVA-D-------DGMIYFTDA  195 (393)
Q Consensus       146 ~L~v~~~~~----------------gl~~id~~g~--~~l~~-~~---~g~~~~~~~~l~~d-~-------dG~l~~td~  195 (393)
                      +|||-|.+.                .|+.+|...-  +++.. ..   .-.+..+.+++++| .       ++.+|++|+
T Consensus        99 rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~  178 (381)
T 3q6k_A           99 RLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF  178 (381)
T ss_dssp             EEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET
T ss_pred             cEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC
Confidence            999999751                1666776431  22221 11   11123567899999 2       458999994


Q ss_pred             CCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-------------------ccCCCcEEEcCC----CCEEEEE
Q 016199          196 SNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-------------------LYFANGVVLSPD----QTHLVYC  252 (393)
Q Consensus       196 ~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-------------------l~~~ngi~~s~d----g~~l~v~  252 (393)
                                       ...+|+.||..+++...+.+.                   ....+||+++|+    ++.||+.
T Consensus       179 -----------------~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~  241 (381)
T 3q6k_A          179 -----------------LRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYL  241 (381)
T ss_dssp             -----------------TTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEE
T ss_pred             -----------------CCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEE
Confidence                             345799999888776655431                   124578999998    8899999


Q ss_pred             eCCCCeEEEEEec---CCC-CcceeeeeccCCCCCC--eEEEC-CCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhh
Q 016199          253 ETSMRRCRKFYIK---GKN-AGRVEKFIETLPGLPD--NIRYD-GEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRY  325 (393)
Q Consensus       253 ~~~~~ri~~~~~~---g~~-~~~~~~~~~~l~g~P~--~i~~d-~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~  325 (393)
                      -....++++...+   .+. ....+.+-+. +...+  +++.| .+|.+|++....                        
T Consensus       242 plss~~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~~~~~D~~~G~ly~~~~~~------------------------  296 (381)
T 3q6k_A          242 AGSAIKVYSVNTKELKQKGGKLNPELLGNR-GKYNDAIALAYDPKTKVIFFAEANT------------------------  296 (381)
T ss_dssp             ESSCSEEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEEEEEECTTTCEEEEEESSS------------------------
T ss_pred             ECCCCcEEEEEHHHhhCcchhhceEEeeec-CCCCCcceEEEeCCCCeEEEEeccC------------------------
Confidence            9888899998742   221 1223323221 11234  35676 889999998754                        


Q ss_pred             hCCCCCCCCCceEEEECCCC------cEEEEeeCCCCCccEEEEE-eCCEEEEEecC
Q 016199          326 LGMPPMGKSSSGVFIVDLDG------KPIAHYYDPEMSLISSAIK-IGDHLYCGSVH  375 (393)
Q Consensus       326 ~~~~~~~~~~~~v~~~d~~g------~~~~~~~d~~~~~~~~~~~-~~g~Lyigs~~  375 (393)
                                +.|.+.++++      ......+|+.....+.+.. .+|+||+.+..
T Consensus       297 ----------~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          297 ----------KQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             ----------SEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             ----------CeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence                      5799999887      2234456777666666655 46899998754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.92  E-value=4.8e-07  Score=87.40  Aligned_cols=145  Identities=10%  Similarity=-0.038  Sum_probs=96.2

Q ss_pred             ecCCCEEEEEec--CC---eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC----------CCc
Q 016199           91 DAHSKLIYTGCE--DG---WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA----------YKG  155 (393)
Q Consensus        91 d~~g~~L~~~~~--~g---~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~----------~~g  155 (393)
                      .++++.+|+.+.  ..   .|..||.++++    +......+..| ++++++||     +.+|+++.          .+.
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~----~~~~i~~g~~p-~i~~spDg-----~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGS----ILGHVNGGFLP-NPVAAHSG-----SEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCe----EEEEecCCCCC-CeEECCCC-----CEEEEEeccccccccCCCCCe
Confidence            356677888764  22   78999988765    43334456678 99999999     37999974          234


Q ss_pred             eEEEeCCceEEEee-ccC--Ccc--ccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          156 LLKISGNSTVLLTD-EAE--GQK--FKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       156 l~~id~~g~~~l~~-~~~--g~~--~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                      |..+|.+..+.+.. ...  ...  ...+.++++++|| .||+++.                ...+.|..+| ++++...
T Consensus        99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~----------------~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF----------------AAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEec----------------CCCCeEEEEE-CCCCEEe
Confidence            77888765222211 111  100  1357799999999 6888852                1135799999 8887643


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      .  -+..+.++.+.++++..|++.+..+++..++.
T Consensus       162 ~--~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          162 Q--LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             E--EcCCCceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence            2  03345556777888778888888888888887

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.91  E-value=2.1e-07  Score=97.17  Aligned_cols=253  Identities=13%  Similarity=0.099  Sum_probs=143.2

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCC---CCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDS---PADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~---~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ..+++++|||+.|++++. +.|+.++.+++   .    ...+......+..+++.+||     +.|.++ ....|+.++.
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~----~~~l~~~~~~~~~~~~SPDG-----~~la~~-~~~~i~~~d~  179 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA----VRQLTHGEGFATDAKLSPKG-----GFVSFI-RGRNLWVIDL  179 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS----CCBCCCSSSCEEEEEECTTS-----SEEEEE-ETTEEEEEET
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcce----EEEcccCCcccccccCCCCC-----CEEEEE-eCCcEEEEec
Confidence            467899999998877765 88999998876   4    44443334567899999999     234444 4567888987


Q ss_pred             Cc--eEEEeeccCCc------------cccccccEEEcCCCc-EEEEeCCCc-cc-------------hhhheehh-ccc
Q 016199          162 NS--TVLLTDEAEGQ------------KFKLTDGVDVADDGM-IYFTDASNK-YY-------------LREYILDI-FEG  211 (393)
Q Consensus       162 ~g--~~~l~~~~~g~------------~~~~~~~l~~d~dG~-l~~td~~~~-~~-------------~~~~~~~~-~e~  211 (393)
                      ++  ...+.......            .+..+.+++++|||+ |+++..... ..             .....+.. .+.
T Consensus       180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  259 (741)
T 2ecf_A          180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA  259 (741)
T ss_dssp             TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred             CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence            65  22222111100            011246789999994 666532110 00             00000000 001


Q ss_pred             CCCcEEEEEeCCC-CeEEEEec---CccCCCcEEEcCCCCEEEEEeC----CCCeEEEEEecCCCCcceeeeecc-CCC-
Q 016199          212 KPNGRLLSFDPVT-KETKVLVS---DLYFANGVVLSPDQTHLVYCET----SMRRCRKFYIKGKNAGRVEKFIET-LPG-  281 (393)
Q Consensus       212 ~~~g~l~~~d~~t-~~~~~~~~---~l~~~ngi~~s~dg~~l~v~~~----~~~ri~~~~~~g~~~~~~~~~~~~-l~g-  281 (393)
                      .....|+.+|..+ ++...+..   .......+++ |||+.|+++..    ....|+.+++++.   +....... ..+ 
T Consensus       260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~  335 (741)
T 2ecf_A          260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN---QQRVLAHETSPTW  335 (741)
T ss_dssp             CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC---CEEEEEEEECSSC
T ss_pred             CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC---ceEEEEEcCCCCc
Confidence            1223788999888 77655532   2234567899 99998887654    2357888887532   22222211 111 


Q ss_pred             --CCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCcc
Q 016199          282 --LPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLI  359 (393)
Q Consensus       282 --~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~  359 (393)
                        ....+++++||++++......                                ...|+.++.+|+ ...+........
T Consensus       336 ~~~~~~~~~spdg~~~~~~~~~g--------------------------------~~~l~~~~~~~~-~~~l~~~~~~v~  382 (741)
T 2ecf_A          336 VPLHNSLRFLDDGSILWSSERTG--------------------------------FQHLYRIDSKGK-AAALTHGNWSVD  382 (741)
T ss_dssp             CCCCSCCEECTTSCEEEEECTTS--------------------------------SCEEEEECSSSC-EEESCCSSSCEE
T ss_pred             CCcCCceEECCCCeEEEEecCCC--------------------------------ccEEEEEcCCCC-eeeeeecceEEE
Confidence              225788999999555443221                                135788887777 555554332222


Q ss_pred             EE--EEEeCCEEEEEecCC----CeEEEEeCC
Q 016199          360 SS--AIKIGDHLYCGSVHH----RGILHLDVN  385 (393)
Q Consensus       360 ~~--~~~~~g~Lyigs~~~----~~i~~~~~~  385 (393)
                      ..  ..++++.|++.+...    ..|..+++.
T Consensus       383 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~  414 (741)
T 2ecf_A          383 ELLAVDEKAGLAYFRAGIESARESQIYAVPLQ  414 (741)
T ss_dssp             EEEEEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred             eEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence            22  233445676665433    246666653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.91  E-value=1.7e-06  Score=84.14  Aligned_cols=158  Identities=11%  Similarity=0.087  Sum_probs=106.0

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEE-EEEeCCCceEE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITM-IVADAYKGLLK  158 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L-~v~~~~~gl~~  158 (393)
                      |......+++++|+++.|.+++.||.|..|+..++.   ....+.........++++++|      ++ ..+...+-|..
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---~~~~l~~h~~~V~~v~~~~~~------~~l~sgs~D~~i~i  176 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSG------KLLASCSADMTIKL  176 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTS------SEEEEEETTSCCCE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEEeccCCcEEEEEEcCCC------CEEEEEeCCCeEEE
Confidence            333456679999999989999999999999988654   123333334567899999998      54 44544555777


Q ss_pred             EeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEecCccCC
Q 016199          159 ISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSDLYFA  237 (393)
Q Consensus       159 id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~~~l~~~  237 (393)
                      +|.++.+.+. ...+.. ..+..+++.++|..+++-                 ...+.|..||..++... .+.......
T Consensus       177 wd~~~~~~~~-~~~~h~-~~V~~v~~~p~~~~l~s~-----------------s~D~~i~~wd~~~~~~~~~~~~h~~~v  237 (410)
T 1vyh_C          177 WDFQGFECIR-TMHGHD-HNVSSVSIMPNGDHIVSA-----------------SRDKTIKMWEVQTGYCVKTFTGHREWV  237 (410)
T ss_dssp             EETTSSCEEE-CCCCCS-SCEEEEEECSSSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             EeCCCCceeE-EEcCCC-CCEEEEEEeCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEeCCCccE
Confidence            7876522221 122221 246688999999766653                 34567899998877643 333334456


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ..+++++|++.+ ++....+.|..|++..
T Consensus       238 ~~~~~~~~g~~l-~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          238 RMVRPNQDGTLI-ASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             EEEEECTTSSEE-EEEETTSCEEEEETTT
T ss_pred             EEEEECCCCCEE-EEEcCCCeEEEEECCC
Confidence            778899999654 5555678899998753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.91  E-value=1.3e-07  Score=86.19  Aligned_cols=151  Identities=17%  Similarity=0.175  Sum_probs=105.6

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ...|+++++  +++||+.+. ++.++.+|.++.+   .+..+. ..+.+.|++.|. +      +||+++....|..+|+
T Consensus        96 ~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~---~~~ti~-~~~eGwGLt~Dg-~------~L~vSdGs~~l~~iDp  162 (268)
T 3nok_A           96 IFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ---RERTTR-YSGEGWGLCYWN-G------KLVRSDGGTMLTFHEP  162 (268)
T ss_dssp             CCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE---EEEEEE-CSSCCCCEEEET-T------EEEEECSSSEEEEECT
T ss_pred             cceeEEEEe--CCEEEEEEccCCEEEEEECCcCc---EEEEEe-CCCceeEEecCC-C------EEEEECCCCEEEEEcC
Confidence            345777776  446999886 7789999988764   133343 334456777663 4      8999987667999998


Q ss_pred             Cce---EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--C---
Q 016199          162 NST---VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--D---  233 (393)
Q Consensus       162 ~g~---~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~---  233 (393)
                      ++.   ..+.-...+.+..++|.+... +|.||+...                 .+..|.++|++++++....+  +   
T Consensus       163 ~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw-----------------~s~~I~vIDp~TG~V~~~Idl~~L~~  224 (268)
T 3nok_A          163 DGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW-----------------HSSDVLEIDPATGTVVGVIDASALTR  224 (268)
T ss_dssp             TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-----------------TCSEEEEECTTTCBEEEEEECHHHHH
T ss_pred             CCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC-----------------CCCeEEEEeCCCCcEEEEEECCCCcc
Confidence            872   222222355566677888776 889998862                 24589999999998765422  1   


Q ss_pred             ---------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          234 ---------LYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       234 ---------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                               ...+||||++++++.+||+.-.=-+++...+
T Consensus       225 ~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          225 AVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             HHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             cccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence                     1367999999999999998866566766554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.91  E-value=2e-08  Score=99.73  Aligned_cols=109  Identities=13%  Similarity=0.244  Sum_probs=76.8

Q ss_pred             ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec---Cc------cCCCcEEEcCC-
Q 016199          176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS---DL------YFANGVVLSPD-  245 (393)
Q Consensus       176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~---~l------~~~ngi~~s~d-  245 (393)
                      +..+.+|+++++|+|||++                 ...++|+++++.+++.+.+..   .+      ..+.||+++|| 
T Consensus        26 l~~P~~~a~~pdG~l~V~e-----------------~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf   88 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTE-----------------RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEE-----------------TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCceEEEEcCCCcEEEEE-----------------cCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCc
Confidence            3457799999999999996                 333579999886666654431   11      22349999997 


Q ss_pred             --CCEEEEEeCC------------CCeEEEEEecCC--CCcceeeeeccCCC----CCCeEEECCCCCEEEEEecC
Q 016199          246 --QTHLVYCETS------------MRRCRKFYIKGK--NAGRVEKFIETLPG----LPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       246 --g~~l~v~~~~------------~~ri~~~~~~g~--~~~~~~~~~~~l~g----~P~~i~~d~~G~lwva~~~~  301 (393)
                        ++.||++.+.            ..+|.||+++..  +....+++++.+|.    .+.+|++++||+|||+....
T Consensus        89 ~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~  164 (454)
T 1cru_A           89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (454)
T ss_dssp             TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             CcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence              6799999864            468999998643  12233444443332    36789999999999998654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.90  E-value=2.1e-06  Score=79.70  Aligned_cols=160  Identities=9%  Similarity=0.024  Sum_probs=103.8

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+.-..-.+++++|+|+.|.+++.+|.|..|+.+++.   ....+.........+++.++|     +.|..+...+.|..
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~-----~~l~s~s~d~~i~v   81 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARK-----NWIIVGSDDFRIRV   81 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGG-----TEEEEEETTSEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCC-----CEEEEECCCCEEEE
Confidence            3333456779999999999999999999999987653   133333333456788898888     14555554555777


Q ss_pred             EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEE-EecCcc
Q 016199          159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKV-LVSDLY  235 (393)
Q Consensus       159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~-~~~~l~  235 (393)
                      +|.+. ....  ...+.. ..+..+++.+++.+.++-                 ...+.|..||..++ .... +.....
T Consensus        82 wd~~~~~~~~--~~~~h~-~~v~~~~~~~~~~~l~sg-----------------s~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           82 FNYNTGEKVV--DFEAHP-DYIRSIAVHPTKPYVLSG-----------------SDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             EETTTCCEEE--EEECCS-SCEEEEEECSSSSEEEEE-----------------ETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             EECCCCcEEE--EEeCCC-CcEEEEEEcCCCCEEEEE-----------------CCCCeEEEEECCCCcchhhhhcccCC
Confidence            78654 2111  111111 336789999999776663                 33466888887655 3322 333344


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ....++++|++..++++....+.|..|++..
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            5678999985434566777789999999853

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.89  E-value=2.6e-06  Score=82.26  Aligned_cols=238  Identities=13%  Similarity=0.121  Sum_probs=138.4

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-e
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-T  164 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~  164 (393)
                      .+++++++|+.|.+++.++.|..|+.+++.   ....+.........+++.++|     +.|+.+...+.|..+|... .
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~p~~-----~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSG-----DKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTS-----SEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEEEEccCCCCEEEEEEcCCC-----CEEEEecCCCcEEEEECCCCe
Confidence            478999999989999999999999987654   123333334567899999988     2455554455577778654 2


Q ss_pred             EEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--------Ccc
Q 016199          165 VLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--------DLY  235 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--------~l~  235 (393)
                      ........    ..+..+++.+ +|.++++.                 ...+.|..||..+++......        ...
T Consensus       199 ~~~~~~~~----~~v~~~~~~~~~~~~l~~~-----------------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~  257 (393)
T 1erj_A          199 CSLTLSIE----DGVTTVAVSPGDGKYIAAG-----------------SLDRAVRVWDSETGFLVERLDSENESGTGHKD  257 (393)
T ss_dssp             EEEEEECS----SCEEEEEECSTTCCEEEEE-----------------ETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             eEEEEEcC----CCcEEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCCcEEEeecccccCCCCCCC
Confidence            11111111    1245678888 78766653                 234668888987776433221        123


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC---------cceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhh
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA---------GRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYW  306 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~---------~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~  306 (393)
                      ....+++++||+.+ ++....+.|..|++.....         +...............++++++|.+.++....     
T Consensus       258 ~v~~v~~~~~g~~l-~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-----  331 (393)
T 1erj_A          258 SVYSVVFTRDGQSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----  331 (393)
T ss_dssp             CEEEEEECTTSSEE-EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----
T ss_pred             CEEEEEECCCCCEE-EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-----
Confidence            45679999999765 5556688999999863211         11111111122223457788888866655433     


Q ss_pred             hhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEe-------CCEEEEEecCCCe
Q 016199          307 DLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKI-------GDHLYCGSVHHRG  378 (393)
Q Consensus       307 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~-------~g~Lyigs~~~~~  378 (393)
                                                   +.|..+|. +|+.+..+..... .+..+.-.       ++.+++++-.+..
T Consensus       332 -----------------------------~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          332 -----------------------------RGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             -----------------------------SEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             -----------------------------CeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence                                         45777775 5677766654332 22222221       3455555445556


Q ss_pred             EEEEeCCCCC
Q 016199          379 ILHLDVNQHP  388 (393)
Q Consensus       379 i~~~~~~~~~  388 (393)
                      |-..++.+..
T Consensus       382 i~iW~~~~~~  391 (393)
T 1erj_A          382 ARIWKYKKIA  391 (393)
T ss_dssp             EEEEEEEEC-
T ss_pred             EEECcccccC
Confidence            6666655443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.88  E-value=4.1e-07  Score=82.49  Aligned_cols=165  Identities=11%  Similarity=0.133  Sum_probs=100.5

Q ss_pred             CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---eEEEeeccCCcccccc
Q 016199          103 DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS---TVLLTDEAEGQKFKLT  179 (393)
Q Consensus       103 ~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~  179 (393)
                      ++.|+.++..++.    ...+......+.+++++++|      +.++....+.|+.++.++   ...+.   .+.....+
T Consensus        21 ~~~i~~~d~~~~~----~~~~~~~~~~v~~~~~spdg------~~l~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~   87 (297)
T 2ojh_A           21 RSSIEIFNIRTRK----MRVVWQTPELFEAPNWSPDG------KYLLLNSEGLLYRLSLAGDPSPEKVD---TGFATICN   87 (297)
T ss_dssp             CEEEEEEETTTTE----EEEEEEESSCCEEEEECTTS------SEEEEEETTEEEEEESSSCCSCEECC---CTTCCCBC
T ss_pred             ceeEEEEeCCCCc----eeeeccCCcceEeeEECCCC------CEEEEEcCCeEEEEeCCCCCCceEec---cccccccc
Confidence            5578888887765    44444445678899999999      554444566788888644   22221   12212345


Q ss_pred             ccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199          180 DGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC  259 (393)
Q Consensus       180 ~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri  259 (393)
                      .+++++++|..++.....             ......|+.++..+++...+... .....+++++|++.++++....+.+
T Consensus        88 ~~~~~spdg~~l~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~  153 (297)
T 2ojh_A           88 NDHGISPDGALYAISDKV-------------EFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVF  153 (297)
T ss_dssp             SCCEECTTSSEEEEEECT-------------TTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEE
T ss_pred             cceEECCCCCEEEEEEeC-------------CCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCce
Confidence            688999999644442110             12356899999887776554433 2367789999999888766555644


Q ss_pred             EEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          260 RKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       260 ~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      ..|.++-. .+....+. ..++....++++++|++.+
T Consensus       154 ~l~~~~~~-~~~~~~~~-~~~~~~~~~~~s~dg~~l~  188 (297)
T 2ojh_A          154 DIYSMDID-SGVETRLT-HGEGRNDGPDYSPDGRWIY  188 (297)
T ss_dssp             EEEEEETT-TCCEEECC-CSSSCEEEEEECTTSSEEE
T ss_pred             EEEEEECC-CCcceEcc-cCCCccccceECCCCCEEE
Confidence            44443211 12222222 2334456788999998544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.87  E-value=1.5e-07  Score=89.94  Aligned_cols=187  Identities=13%  Similarity=0.094  Sum_probs=110.7

Q ss_pred             CceEEEecCCCEEEEEec------CCeEEEEEcCCCCC-cceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           85 PEDLLYDAHSKLIYTGCE------DGWIKRVTLNDSPA-DSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~------~g~I~~~~~~~~~~-~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      -.+++|+|||++|.+++.      ++.|..|+...+.. ................+++.+++      +++++...+.|.
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~------~~l~~s~dg~v~  118 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK------GILVASDSGAVE  118 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT------EEEEEETTSCEE
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC------CEEEEECCCEEE
Confidence            456899999998887775      56777776544320 00011111223457889999999      888886665566


Q ss_pred             EEeCCc-eEEEe--eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-C
Q 016199          158 KISGNS-TVLLT--DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-D  233 (393)
Q Consensus       158 ~id~~g-~~~l~--~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~  233 (393)
                      .+|... .....  ....+. ...+..+++.++|+..++-                 ...+.|..||..+++...... .
T Consensus       119 lWd~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~l~sg-----------------s~dg~v~iwd~~~~~~~~~~~~h  180 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEH-DDIVKTLSVFSDGTQAVSG-----------------GKDFSVKVWDLSQKAVLKSYNAH  180 (357)
T ss_dssp             EC--------CCCCEEECCC-SSCEEEEEECSSSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCC
T ss_pred             EeeccccceeEEEeeccCCC-CCCEEEEEECCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEcCC
Confidence            666533 11111  011111 1346789999999776653                 335678889998877554433 3


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEE
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLI  296 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwv  296 (393)
                      ....+.++++++++.++++....+.|..|++...+......+. .....+..+++.+++. +.+
T Consensus       181 ~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          181 SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEE
T ss_pred             CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcccceEE
Confidence            4456789999998877777777889999987533211111111 1223345677887754 444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.87  E-value=5.2e-07  Score=81.76  Aligned_cols=180  Identities=12%  Similarity=0.063  Sum_probs=111.7

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCC-CCCcceeeeeecC--CCceeeeEECCCCCCCCceEEEEEeC----CCc
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLND-SPADSLVHNWINT--GGRPLGIAFANSDPDADRITMIVADA----YKG  155 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~-~~~~~~~~~~~~~--~~~p~gl~~d~~G~~~~~~~L~v~~~----~~g  155 (393)
                      ....+++++++|+.|+++. ++.|+.++.++ +.    .......  ...+..+++.++|     +.|+++..    ...
T Consensus        42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg-----~~l~~~~~~~~~~~~  111 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS----PEKVDTGFATICNNDHGISPDG-----ALYAISDKVEFGKSA  111 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS----CEECCCTTCCCBCSCCEECTTS-----SEEEEEECTTTSSCE
T ss_pred             cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC----ceEeccccccccccceEECCCC-----CEEEEEEeCCCCcce
Confidence            4567899999999776654 78999999887 54    3333221  2456789999999     24555542    235


Q ss_pred             eEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      |+.++.++  ...+...      ..+..+++.+||. ++++...               ...-.|+.++..+++...+..
T Consensus       112 l~~~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~  170 (297)
T 2ojh_A          112 IYLLPSTGGTPRLMTKN------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTH  170 (297)
T ss_dssp             EEEEETTCCCCEECCSS------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCC
T ss_pred             EEEEECCCCceEEeecC------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEccc
Confidence            77787655  3332211      1245678999995 5544310               123368888888777766655


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          233 DLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                      .......+++++||+.++++...  ..+|+.+++++.   ....+. ........++++++|++.+.
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERIT-DSAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CEEECC-CCSEEEEEEEECTTSSEEEE
T ss_pred             CCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---CcEEEe-cCCcccCCeEECCCCCEEEE
Confidence            55567889999999988877643  345666654432   222222 12222345788999985543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.85  E-value=3.5e-06  Score=81.33  Aligned_cols=183  Identities=8%  Similarity=0.086  Sum_probs=121.1

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ...+++++++++.|++++.+|.|..|+..++.   ....+.........+++++ .      .++.+...+.|..+|...
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~-~------~l~~~~~dg~i~i~d~~~  205 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQT---KLRTMAGHQARVGCLSWNR-H------VLSSGSRSGAIHHHDVRI  205 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEEET-T------EEEEEETTSEEEEEETTS
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCe---EEEEecCCCCceEEEEECC-C------EEEEEcCCCCEEEEeccc
Confidence            35678999999999999999999999987654   1333433345677888853 3      677776666677888652


Q ss_pred             -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccCCCcEE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYFANGVV  241 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~~ngi~  241 (393)
                       ..... ...+. ...+.++++.++|.++++.                 ...+.|..||..+++.... .........++
T Consensus       206 ~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~s~-----------------~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  266 (401)
T 4aez_A          206 ANHQIG-TLQGH-SSEVCGLAWRSDGLQLASG-----------------GNDNVVQIWDARSSIPKFTKTNHNAAVKAVA  266 (401)
T ss_dssp             SSCEEE-EEECC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred             Ccceee-EEcCC-CCCeeEEEEcCCCCEEEEE-----------------eCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence             11111 11111 1235688999999766653                 3346799999887655433 33445678999


Q ss_pred             EcCCCCEEEEEeC--CCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          242 LSPDQTHLVYCET--SMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       242 ~s~dg~~l~v~~~--~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++++++.++++..  ..+.|..|++...+  ....+  ........++++++|++.++..
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATGA--RVNTV--DAGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTCC--EEEEE--ECSSCEEEEEECSSSSEEEEEE
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCCC--EEEEE--eCCCcEEEEEECCCCCeEEEEe
Confidence            9999888888754  68899999985321  12222  1223456788999999777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.84  E-value=1e-07  Score=91.26  Aligned_cols=145  Identities=12%  Similarity=0.093  Sum_probs=97.3

Q ss_pred             ceeeeEECCCCCCCCceEEEEEe-------------CCCceEEEeCCc----eEEEeec---cCCccccccccEEEcC--
Q 016199          129 RPLGIAFANSDPDADRITMIVAD-------------AYKGLLKISGNS----TVLLTDE---AEGQKFKLTDGVDVAD--  186 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~-------------~~~gl~~id~~g----~~~l~~~---~~g~~~~~~~~l~~d~--  186 (393)
                      .|..|+.+++|      .+|++.             ..+.|+++|++.    .+.+...   .+... -.|++|.+.+  
T Consensus        51 G~EDi~~~~~G------~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~-f~PhGi~~~~d~  123 (355)
T 3sre_A           51 GSEDLEILPNG------LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISS-FNPHGISTFIDD  123 (355)
T ss_dssp             CCCEEEECTTS------EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGG-CCEEEEEEEECT
T ss_pred             CcceeEEcCCC------eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCc-eeeeeeEEEECC
Confidence            57788888888      888885             344588898762    3333211   11122 2588988755  


Q ss_pred             CC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec----CccCCCcEEEcCCCCEEEEEeC------
Q 016199          187 DG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS----DLYFANGVVLSPDQTHLVYCET------  254 (393)
Q Consensus       187 dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~----~l~~~ngi~~s~dg~~l~v~~~------  254 (393)
                      +|  +||+.+...             ......|++++++++..+.+.+    .+..||.++++++| .+|+++.      
T Consensus       124 dg~~~L~Vvnh~~-------------~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~  189 (355)
T 3sre_A          124 DNTVYLLVVNHPG-------------SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDP  189 (355)
T ss_dssp             TCCEEEEEEECST-------------TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSH
T ss_pred             CCcEEEEEEECCC-------------CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCc
Confidence            45  689997542             1234569999998766554422    36789999999999 5777764      


Q ss_pred             -----------CCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEec
Q 016199          255 -----------SMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALAT  300 (393)
Q Consensus       255 -----------~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~  300 (393)
                                 ..++|++|+..     +.+.+.+++. +|+||++++||+ +|++...
T Consensus       190 ~~~~~e~~~~~~~g~vyr~d~~-----~~~~~~~~l~-~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          190 YLKSWEMHLGLAWSFVTYYSPN-----DVRVVAEGFD-FANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             HHHHHHHHTTCCCEEEEEECTT-----CCEEEEEEES-SEEEEEECTTSSEEEEEEGG
T ss_pred             ccccchhhccCCccEEEEEECC-----eEEEeecCCc-ccCcceECCCCCEEEEEeCC
Confidence                       24688888752     3445555554 799999999996 8887764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.84  E-value=3.7e-06  Score=79.95  Aligned_cols=240  Identities=10%  Similarity=0.107  Sum_probs=138.8

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeee-eecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHN-WINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~-~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      -.+++|.+++ .|.+++.+|.|..|+.++++....... .....+....+++.++|     +.|..+...+-|..+|.+.
T Consensus        85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-----~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-----TQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTT
T ss_pred             EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-----CEEEEEeCCCeEEEEECCC
Confidence            4568999987 588999999999999886541111111 11223567899999999     2344454445577778754


Q ss_pred             eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec---CccCCCc
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS---DLYFANG  239 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~---~l~~~ng  239 (393)
                      .+.+. ...+.. ..+..+++.+++ .++++.                 ...+.|..||..+++......   .......
T Consensus       159 ~~~~~-~~~~h~-~~V~~~~~~~~~~~~l~s~-----------------s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  219 (344)
T 4gqb_B          159 QVVLS-SYRAHA-AQVTCVAASPHKDSVFLSC-----------------SEDNRILLWDTRCPKPASQIGCSAPGYLPTS  219 (344)
T ss_dssp             TEEEE-EECCCS-SCEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTSSSCEEECC----CCCEEE
T ss_pred             CcEEE-EEcCcC-CceEEEEecCCCCCceeee-----------------ccccccccccccccceeeeeecceeecccee
Confidence            11111 112211 335688899987 566653                 234678889987766443321   1234577


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      +++++++..++++...++.|..||+...+  ....+. ...+.-..+++.++|. +.++....                 
T Consensus       220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D-----------------  279 (344)
T 4gqb_B          220 LAWHPQQSEVFVFGDENGTVSLVDTKSTS--CVLSSA-VHSQCVTGLVFSPHSVPFLASLSED-----------------  279 (344)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEESCC----CCEEEE-CCSSCEEEEEECSSSSCCEEEEETT-----------------
T ss_pred             eeecCCCCcceEEeccCCcEEEEECCCCc--EEEEEc-CCCCCEEEEEEccCCCeEEEEEeCC-----------------
Confidence            88999877777887788999999985322  122222 2222335678899885 44443322                 


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEE--EeCCEEEEEecCCCeEEEEeCCCC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAI--KIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~--~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                       +.|..+|.+...+..+.... ..+..+.  +++.+|..++-....|...++...
T Consensus       280 -----------------~~i~vwd~~~~~~~~~~~H~-~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          280 -----------------CSLAVLDSSLSELFRSQAHR-DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             -----------------SCEEEECTTCCEEEEECCCS-SCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             -----------------CeEEEEECCCCcEEEEcCCC-CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence                             34677776554444443322 2233333  244556554434556666665443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.84  E-value=1e-06  Score=91.53  Aligned_cols=259  Identities=14%  Similarity=0.126  Sum_probs=146.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ..+.++++++| +.+.++ .++.|+.++..++.    ..........+..++++++|      +.++......|+.++.+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~SpdG------~~la~~~~~~i~v~~~~  149 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARK----VTYLFDTNEETASLDFSPVG------DRVAYVRNHNLYIARGG  149 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTE----EEEEECCTTCCTTCEECTTS------SEEEEEETTEEEEEECB
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCc----eEEccCCcccccCCcCCCCC------CEEEEEECCeEEEEecC
Confidence            45778999999 545444 45899999988765    44444434567789999999      43333345668887753


Q ss_pred             ------c-eEEEeeccCC----------ccccccccEEEcCCCc-EEEEeC--CCc--cch----------hhheeh-hc
Q 016199          163 ------S-TVLLTDEAEG----------QKFKLTDGVDVADDGM-IYFTDA--SNK--YYL----------REYILD-IF  209 (393)
Q Consensus       163 ------g-~~~l~~~~~g----------~~~~~~~~l~~d~dG~-l~~td~--~~~--~~~----------~~~~~~-~~  209 (393)
                            + ...+......          ..+..+.++.++|||+ |+++..  +..  +..          ....+. ..
T Consensus       150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence                  4 2222111111          0112257899999995 555431  000  000          000000 00


Q ss_pred             ccCCCcEEEEEeCCCCeEEEEecC---ccCCCcEEEcCCCCEEEEEeCCC----CeEEEEEecCCCCcceeeee-ccCCC
Q 016199          210 EGKPNGRLLSFDPVTKETKVLVSD---LYFANGVVLSPDQTHLVYCETSM----RRCRKFYIKGKNAGRVEKFI-ETLPG  281 (393)
Q Consensus       210 e~~~~g~l~~~d~~t~~~~~~~~~---l~~~ngi~~s~dg~~l~v~~~~~----~ri~~~~~~g~~~~~~~~~~-~~l~g  281 (393)
                      +......|+.+|.++++...+...   ...+..++++|||+.++++....    ..|+.+++++.+  ....+. .....
T Consensus       230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~  307 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKH  307 (706)
T ss_dssp             SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSS
T ss_pred             CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCC
Confidence            112346799999998877655422   23356789999999888865433    378888875321  222222 11111


Q ss_pred             ---CCCeEEECC--CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCC
Q 016199          282 ---LPDNIRYDG--EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEM  356 (393)
Q Consensus       282 ---~P~~i~~d~--~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~  356 (393)
                         ....+++++  +|++.++.....                                ...|+.++.+|+.+..+.....
T Consensus       308 ~~~~~~~~~~sp~~dg~~l~~~~~~g--------------------------------~~~l~~~~~~~~~~~~l~~~~~  355 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNNQFIWQSRRDG--------------------------------WNHLYLYDTTGRLIRQVTKGEW  355 (706)
T ss_dssp             CCCCCSCCEECTTCSSEEEEEECTTS--------------------------------SCEEEEEETTSCEEEECCCSSS
T ss_pred             eECccCCceeecCCCCEEEEEEccCC--------------------------------ccEEEEEECCCCEEEecCCCCe
Confidence               125678988  998554433211                                1347788877777777654432


Q ss_pred             CccE--EEEEeCCEEEEEecCCC----eEEEEeCCCC
Q 016199          357 SLIS--SAIKIGDHLYCGSVHHR----GILHLDVNQH  387 (393)
Q Consensus       357 ~~~~--~~~~~~g~Lyigs~~~~----~i~~~~~~~~  387 (393)
                      ....  ...++++.||+++....    .|.+++++..
T Consensus       356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            2222  22234567888776544    7888877543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.83  E-value=7.9e-07  Score=85.23  Aligned_cols=181  Identities=8%  Similarity=0.027  Sum_probs=116.7

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCc---------------eeeeEECCCCCCCCceEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGR---------------PLGIAFANSDPDADRITM  147 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~---------------p~gl~~d~~G~~~~~~~L  147 (393)
                      ....+++++++++.|++++.++.|..|+...+.   ....+......               ...+++.+++      .+
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  220 (425)
T 1r5m_A          150 APIVSVKWNKDGTHIISMDVENVTILWNVISGT---VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD------KF  220 (425)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---EEEEECCC---------------CCCBSCCEEEETT------EE
T ss_pred             ccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---EEEEeeccccCccceeeccccCCcceeeEEEEcCCC------EE
Confidence            456679999999989999999999999987654   12222211112               6778888888      88


Q ss_pred             EEEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          148 IVADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       148 ~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      +++...+.|..++...   ...+.    +. ...+..+++.++|.++++.                 ...+.|..||..+
T Consensus       221 ~~~~~~g~i~~~d~~~~~~~~~~~----~~-~~~i~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~  278 (425)
T 1r5m_A          221 VIPGPKGAIFVYQITEKTPTGKLI----GH-HGPISVLEFNDTNKLLLSA-----------------SDDGTLRIWHGGN  278 (425)
T ss_dssp             EEECGGGCEEEEETTCSSCSEEEC----CC-SSCEEEEEEETTTTEEEEE-----------------ETTSCEEEECSSS
T ss_pred             EEEcCCCeEEEEEcCCCceeeeec----cC-CCceEEEEECCCCCEEEEE-----------------cCCCEEEEEECCC
Confidence            8886666688888654   22221    11 1235678999999765553                 2346788888776


Q ss_pred             CeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          225 KETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       225 ~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++... +.........+++++++  ++++....+.|..|++...+  ....+. ........++++++|++.++..
T Consensus       279 ~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          279 GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTSSEEEEEE
T ss_pred             CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCCCEEEEEE
Confidence            54333 32233456789999998  55566678899999985321  112222 2223356788999998666544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.82  E-value=4.9e-06  Score=78.50  Aligned_cols=190  Identities=10%  Similarity=0.118  Sum_probs=120.7

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc-ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD-SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ...+++++++|+.|.++..++.|..|+....... .....+....+....+.+.+++      .++.+...+.|..+|..
T Consensus        99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------~l~s~s~d~~i~~wd~~  172 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN------QIVTSSGDTTCALWDIE  172 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT------EEEEEETTSCEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC------cEEEEECCCcEEEEECC
Confidence            3456889999998889999999999998754311 1122222233456778888888      88888766668888865


Q ss_pred             ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEE
Q 016199          163 STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVV  241 (393)
Q Consensus       163 g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~  241 (393)
                      ..+.+. ...+.. ..+..+++.++|.++++.                 ...+.|..||..+++... +.......+.++
T Consensus       173 ~~~~~~-~~~~h~-~~v~~~~~~~~~~~l~sg-----------------~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
T 1got_B          173 TGQQTT-TFTGHT-GDVMSLSLAPDTRLFVSG-----------------ACDASAKLWDVREGMCRQTFTGHESDINAIC  233 (340)
T ss_dssp             TTEEEE-EECCCS-SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred             CCcEEE-EEcCCC-CceEEEEECCCCCEEEEE-----------------eCCCcEEEEECCCCeeEEEEcCCcCCEEEEE
Confidence            411111 111211 235688999999877763                 335678889987766543 333344578899


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCCCeEEECCCCCEEEEEecC
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ++|+++.+ ++....+.|..|++...+  ....+. .........++++++|++.++....
T Consensus       234 ~~p~~~~l-~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          234 FFPNGNAF-ATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             ECTTSSEE-EEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             EcCCCCEE-EEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCC
Confidence            99999755 555668899999985321  112221 1111113457889999987766543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.82  E-value=4.7e-06  Score=80.25  Aligned_cols=231  Identities=13%  Similarity=0.060  Sum_probs=138.8

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee-ecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW-INTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS---  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---  163 (393)
                      .++.++++.|.+++.+|.|..|+.+++.    .... ....+....+++.++|     +.|+.+...+.|..+|.+.   
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-----~~l~s~s~d~~i~iwd~~~~~~  173 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNL----QREIDQAHVSEITKLKFFPSG-----EALISSSQDMQLKIWSVKDGSN  173 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCE----EEEETTSSSSCEEEEEECTTS-----SEEEEEETTSEEEEEETTTCCC
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcc----eeeecccccCccEEEEECCCC-----CEEEEEeCCCeEEEEeCCCCcC
Confidence            3577899888899999999999987654    3322 2334567899999998     1455554455577778653   


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC----------
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD----------  233 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~----------  233 (393)
                      ...+.    +. ...+..+++.++|..+++.                 ...+.|..||..+++.......          
T Consensus       174 ~~~~~----~h-~~~v~~~~~~~~~~~l~s~-----------------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~  231 (420)
T 3vl1_A          174 PRTLI----GH-RATVTDIAIIDRGRNVLSA-----------------SLDGTIRLWECGTGTTIHTFNRKENPHDGVNS  231 (420)
T ss_dssp             CEEEE----CC-SSCEEEEEEETTTTEEEEE-----------------ETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred             ceEEc----CC-CCcEEEEEEcCCCCEEEEE-----------------cCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence            23332    11 1235688999999766653                 2345688888877654433221          


Q ss_pred             ---------------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEE
Q 016199          234 ---------------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIA  297 (393)
Q Consensus       234 ---------------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva  297 (393)
                                     ......++++++++.+ ++....+.|..|++...+  ....+.....+....++++++|. +.++
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSCTTEEE-EEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred             EEEecCCcceeeecccCcccceEEcCCCCEE-EEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEE
Confidence                           1234567788999655 555567889999985321  12222222223345688999998 5555


Q ss_pred             EecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-C-cEEEEeeCCCCCccEEEEEeCCEEEEEecC
Q 016199          298 LATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-G-KPIAHYYDPEMSLISSAIKIGDHLYCGSVH  375 (393)
Q Consensus       298 ~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g-~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~  375 (393)
                      ....                                  +.|..+|.+ + ..+..+.......++.+...++.+++++-.
T Consensus       309 g~~d----------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~  354 (420)
T 3vl1_A          309 GYEN----------------------------------GMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGF  354 (420)
T ss_dssp             EETT----------------------------------SEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETT
T ss_pred             EeCC----------------------------------CeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecC
Confidence            4432                                  456677753 3 335555432222344444456665555545


Q ss_pred             CCeEEEEeCCC
Q 016199          376 HRGILHLDVNQ  386 (393)
Q Consensus       376 ~~~i~~~~~~~  386 (393)
                      ...|...++..
T Consensus       355 d~~v~iw~~~~  365 (420)
T 3vl1_A          355 DTSIKLDIISD  365 (420)
T ss_dssp             TEEEEEEEECC
T ss_pred             CccEEEEeccC
Confidence            56676677654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.81  E-value=1.7e-06  Score=87.55  Aligned_cols=246  Identities=12%  Similarity=0.061  Sum_probs=143.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc-ceeeeeecCCCc-eeeeEECC--CCCCCCceEEEEEeCCCceEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD-SLVHNWINTGGR-PLGIAFAN--SDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~-~~~~~~~~~~~~-p~gl~~d~--~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      ..+.+++++++|+.|.++. ++.|..|+.+++... .....+...... ...+++.+  +|     +.|..+...+.|..
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-----~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-----QYLCSGDESGKVIV   92 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-----CEEEEEETTSEEEE
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-----CEEEEecCCCEEEE
Confidence            4466799999999777776 788999998865100 114444444556 89999999  98     13455544444666


Q ss_pred             EeCC-c------eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe
Q 016199          159 ISGN-S------TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV  231 (393)
Q Consensus       159 id~~-g------~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~  231 (393)
                      ++.+ +      .........+. ...+..++++++|...++....             ....+.|+.+|. .+....+.
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~v~~~d~-~~~~~~~~  157 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEG-------------RDNFGVFISWDS-GNSLGEVS  157 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECC-------------SSCSEEEEETTT-CCEEEECC
T ss_pred             EeCCCCcccccccccccchhhcc-cccEEEEEEeCCCCEEEEeccC-------------CCCccEEEEEEC-CCcceeee
Confidence            6652 1      01111111111 1236789999999755543111             012367888883 34444444


Q ss_pred             cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC---CCCeEEECCC-CCEEEEEecCcchhhh
Q 016199          232 SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG---LPDNIRYDGE-GHYLIALATEFSTYWD  307 (393)
Q Consensus       232 ~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g---~P~~i~~d~~-G~lwva~~~~r~~~~~  307 (393)
                      ........++++++++.++++....+.|..|++...+  ....+. ...+   ....++++++ |++.++....      
T Consensus       158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d------  228 (615)
T 1pgu_A          158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSD------  228 (615)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETT------
T ss_pred             cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCC------
Confidence            4445678899999998667777778999999974321  112221 2222   3456788999 8876655432      


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeC---CCCCccEEEEE-eCCEEEEEecCCCeEEEE
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYD---PEMSLISSAIK-IGDHLYCGSVHHRGILHL  382 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d---~~~~~~~~~~~-~~g~Lyigs~~~~~i~~~  382 (393)
                                                  +.|..+|. +++.+..+..   .....+..+.- ++..|+.++ ....|..+
T Consensus       229 ----------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~~w  279 (615)
T 1pgu_A          229 ----------------------------RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVW  279 (615)
T ss_dssp             ----------------------------CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEE
T ss_pred             ----------------------------CeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEc-CCCcEEEE
Confidence                                        34777774 5777777722   11122222222 334555554 45677777


Q ss_pred             eCCCC
Q 016199          383 DVNQH  387 (393)
Q Consensus       383 ~~~~~  387 (393)
                      ++...
T Consensus       280 d~~~~  284 (615)
T 1pgu_A          280 DVTTS  284 (615)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            77644

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.80  E-value=4.7e-06  Score=78.24  Aligned_cols=188  Identities=11%  Similarity=0.065  Sum_probs=112.4

Q ss_pred             CCCceEEEecC----CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceE
Q 016199           83 KGPEDLLYDAH----SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLL  157 (393)
Q Consensus        83 ~~Pe~ia~d~~----g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~  157 (393)
                      ..-.++++.++    ++.|.+++.|+.|..|+...+... ....+.........+++.+++      .+++. ...+.|.
T Consensus        33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~------~~l~s~s~D~~i~  105 (321)
T 3ow8_A           33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTL------PIAASSSLDAHIR  105 (321)
T ss_dssp             SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSS------SEEEEEETTSEEE
T ss_pred             CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCC------CEEEEEeCCCcEE
Confidence            34456788663    567889999998888887654300 011122223456788899888      55444 3345566


Q ss_pred             EEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccC
Q 016199          158 KISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYF  236 (393)
Q Consensus       158 ~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~  236 (393)
                      .+|....+.+.. ....+ ..+..+++.++|..+++.                 ...+.+..||..+++.... ......
T Consensus       106 lWd~~~~~~~~~-~~~~~-~~~~~~~~spdg~~l~~g-----------------~~dg~v~i~~~~~~~~~~~~~~~~~~  166 (321)
T 3ow8_A          106 LWDLENGKQIKS-IDAGP-VDAWTLAFSPDSQYLATG-----------------THVGKVNIFGVESGKKEYSLDTRGKF  166 (321)
T ss_dssp             EEETTTTEEEEE-EECCT-TCCCCEEECTTSSEEEEE-----------------CTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred             EEECCCCCEEEE-EeCCC-ccEEEEEECCCCCEEEEE-----------------cCCCcEEEEEcCCCceeEEecCCCce
Confidence            778654111111 11111 235578999999776663                 3456788899877655433 333445


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      ...++++|||+.++. ....+.|..|++...   +..............++++++|++.++...
T Consensus       167 v~~~~~spdg~~las-g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          167 ILSIAYSPDGKYLAS-GAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             EEEEEECTTSSEEEE-EETTSCEEEEETTTT---EEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred             EEEEEECCCCCEEEE-EcCCCeEEEEECCCC---cEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence            678999999986654 456788999998532   221112222233467899999997766543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.80  E-value=6.7e-06  Score=78.29  Aligned_cols=280  Identities=12%  Similarity=0.072  Sum_probs=147.4

Q ss_pred             CCCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeee----------ecCCCceeeeEECC-CCCCCCceEEEEE
Q 016199           83 KGPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNW----------INTGGRPLGIAFAN-SDPDADRITMIVA  150 (393)
Q Consensus        83 ~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~----------~~~~~~p~gl~~d~-~G~~~~~~~L~v~  150 (393)
                      ..-.++++++ +++.|++++.+|.|..|+.+++.........          .........+++.+ ++     +.|+.+
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~s~  118 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT-----GMFTSS  118 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT-----TCEEEE
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC-----cEEEEE
Confidence            4556799999 9998999999999999998865421111100          01235578899988 55     135555


Q ss_pred             eCCCceEEEeCCc-eEEEeeccCCccccccccEEEcC---CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe
Q 016199          151 DAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVAD---DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE  226 (393)
Q Consensus       151 ~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~---dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~  226 (393)
                      ...+.|..++.+. ..........    .+..+.+.+   ++.++++.                 ...+.|..||..+++
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFNFEE----TVYSHHMSPVSTKHCLVAVG-----------------TRGPKVQLCDLKSGS  177 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSS----CEEEEEECSSCSSCCEEEEE-----------------ESSSSEEEEESSSSC
T ss_pred             eCCCeEEEeeCCCCccceeccCCC----ceeeeEeecCCCCCcEEEEE-----------------cCCCeEEEEeCCCcc
Confidence            4455577778765 2111111111    233555555   34454442                 234678889987665


Q ss_pred             EEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--------------ccCCCCCCeEEECCC
Q 016199          227 TKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--------------ETLPGLPDNIRYDGE  291 (393)
Q Consensus       227 ~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--------------~~l~g~P~~i~~d~~  291 (393)
                      ... +.........++++++++.++++....+.|..|++.... .....+.              ....+....++++++
T Consensus       178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS-GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS-CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC-cccccccccccccceeeccccccccCceeEEEEcCC
Confidence            433 333344567899999998777777788999999985321 0111110              011122356788999


Q ss_pred             CCEEEEEe-cCcchhhhhhhcCcchhhhhhh---hhhhh---------CCCCCCCCCceEEEECC-CCcEEEEeeCCCCC
Q 016199          292 GHYLIALA-TEFSTYWDLAYRYPFIRKVSGM---VVRYL---------GMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMS  357 (393)
Q Consensus       292 G~lwva~~-~~r~~~~~~~~~~~~~r~~~~~---~~~~~---------~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~  357 (393)
                      |++.++.. .+.-.+|++-............   .....         .........+.|..+|. +++.+..+......
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  336 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT  336 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred             CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence            98665543 3333455554332211100000   00000         00000111234556663 56666666543322


Q ss_pred             ccEEEEEeC-CEEEEEecCCCeEEEEeCCCCCCC
Q 016199          358 LISSAIKIG-DHLYCGSVHHRGILHLDVNQHPAR  390 (393)
Q Consensus       358 ~~~~~~~~~-g~Lyigs~~~~~i~~~~~~~~~~~  390 (393)
                      ..+.....+ ..|+.++ ....|...++...+++
T Consensus       337 v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          337 VDCCVFQSNFQELYSGS-RDCNILAWVPSLYEPV  369 (408)
T ss_dssp             EEEEEEETTTTEEEEEE-TTSCEEEEEECC----
T ss_pred             EEEEEEcCCCCEEEEEC-CCCeEEEEeCCCCCcc
Confidence            222333344 4566554 5557777787666554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.78  E-value=6.4e-07  Score=87.70  Aligned_cols=191  Identities=12%  Similarity=0.080  Sum_probs=116.2

Q ss_pred             CceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCCceEEEeCC
Q 016199           85 PEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        85 Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      -.+++|+| +++.|.+|+.||.|..|+.+.+.... ...+....+...+|+|.+ ++     +.|+.+..++-|..+|.+
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~-----~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNT-----NQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCT-----TEEEEECSSSCEEEEETT
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCC-----CEEEEEeCCCEEEEeecc
Confidence            46799998 55678889999999999987654111 111112245678999986 56     134444334446677876


Q ss_pred             c--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          163 S--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       163 g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                      +  ...+.. .... ...+..++++++|.++++-                 ...|.|..+|..++.+..+.......+.+
T Consensus       196 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~g-----------------~~dg~i~~wd~~~~~~~~~~~h~~~v~~v  256 (435)
T 4e54_B          196 GNILRVFAS-SDTI-NIWFCSLDVSASSRMVVTG-----------------DNVGNVILLNMDGKELWNLRMHKKKVTHV  256 (435)
T ss_dssp             SCEEEEEEC-CSSC-SCCCCCEEEETTTTEEEEE-----------------CSSSBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred             CCceeEEec-cCCC-CccEEEEEECCCCCEEEEE-----------------eCCCcEeeeccCcceeEEEecccceEEee
Confidence            6  233221 1111 1235578899999776653                 34567889998766544433334456789


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      +++|+++.++++....+.|..|++...+.................++++++|++.++...
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence            999999878888877889999998533211110000011112245667889987665543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.78  E-value=6.3e-06  Score=75.54  Aligned_cols=237  Identities=13%  Similarity=0.079  Sum_probs=143.3

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....+++++++++.|++++.+|.|..|+............+.........+.++ .+      .++.+...+.|..+|..
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~------~l~~~~~d~~i~~~d~~  132 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DG------VVISGSWDKTAKVWKEG  132 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TT------EEEEEETTSEEEEEETT
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-CC------EEEEEeCCCCEEEEcCC
Confidence            455679999999999999999999989876543222233333334556788884 34      67777666667777833


Q ss_pred             c-eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCc
Q 016199          163 S-TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANG  239 (393)
Q Consensus       163 g-~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ng  239 (393)
                      . ...+.. ..    ..+..+.+.+ ++..+++.                 ...+.|..||.. .....+.. .......
T Consensus       133 ~~~~~~~~-~~----~~v~~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~-~~~~~~~~~~~~~i~~  189 (313)
T 3odt_A          133 SLVYNLQA-HN----ASVWDAKVVSFSENKFLTA-----------------SADKTIKLWQND-KVIKTFSGIHNDVVRH  189 (313)
T ss_dssp             EEEEEEEC-CS----SCEEEEEEEETTTTEEEEE-----------------ETTSCEEEEETT-EEEEEECSSCSSCEEE
T ss_pred             cEEEeccc-CC----CceeEEEEccCCCCEEEEE-----------------ECCCCEEEEecC-ceEEEEeccCcccEEE
Confidence            2 222221 11    2244666666 66555542                 234678888843 23333333 3445678


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      ++++++++  +++....+.|..|++...+  ....+. ...+....++++++|.+..+...                   
T Consensus       190 ~~~~~~~~--~~~~~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d-------------------  245 (313)
T 3odt_A          190 LAVVDDGH--FISCSNDGLIKLVDMHTGD--VLRTYE-GHESFVYCIKLLPNGDIVSCGED-------------------  245 (313)
T ss_dssp             EEEEETTE--EEEEETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTSCEEEEETT-------------------
T ss_pred             EEEcCCCe--EEEccCCCeEEEEECCchh--hhhhhh-cCCceEEEEEEecCCCEEEEecC-------------------
Confidence            99999985  5566678899999985321  122222 22334567889999976555442                   


Q ss_pred             hhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCC
Q 016199          320 GMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPAR  390 (393)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~  390 (393)
                                      +.|..+|. +++.+..+..+.....+.....++++..++ ....|..+++++....
T Consensus       246 ----------------g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          246 ----------------RTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGS-SDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             ----------------SEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEE-TTSCEEEEESCGGGCC
T ss_pred             ----------------CEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEe-CCCcEEEEeCCCCcee
Confidence                            45777885 577777776554332233334456665554 5668888887665443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.78  E-value=8.5e-07  Score=84.99  Aligned_cols=190  Identities=7%  Similarity=0.024  Sum_probs=116.7

Q ss_pred             CceEEEecCCCEEEEEe--cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           85 PEDLLYDAHSKLIYTGC--EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~--~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ...++|+|||+.|.+++  .++.|..|+..++.   ....+ ...+...+++|.++|      ++++.....++.+++..
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~---~~~~~-~~~~~V~~v~fspdg------~~l~s~s~~~~~~~~~~  205 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLT---EKFEI-ETRGEVKDLHFSTDG------KVVAYITGSSLEVISTV  205 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTE---EEEEE-ECSSCCCEEEECTTS------SEEEEECSSCEEEEETT
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc---EEEEe-CCCCceEEEEEccCC------ceEEeccceeEEEEEec
Confidence            44699999999777665  47889999988754   12223 334568899999999      77666567788888653


Q ss_pred             -ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-----EecCccC
Q 016199          163 -STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-----LVSDLYF  236 (393)
Q Consensus       163 -g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-----~~~~l~~  236 (393)
                       +.........+. ...+..+++.++|..+++-+..             +.....++.++........     +......
T Consensus       206 ~~~~~~~~~~~~~-~~~v~~v~fspdg~~l~~~s~d-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  271 (365)
T 4h5i_A          206 TGSCIARKTDFDK-NWSLSKINFIADDTVLIAASLK-------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKG  271 (365)
T ss_dssp             TCCEEEEECCCCT-TEEEEEEEEEETTEEEEEEEES-------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred             cCcceeeeecCCC-CCCEEEEEEcCCCCEEEEEecC-------------CcceeEEeecccccceecceeeeeecCCCCC
Confidence             322221111111 1235678999999766653111             1122246666655444322     2223344


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      .+.++++|||+.| ++.+..+.|..|++...+  ....+.....+....+++++||++.++....
T Consensus       272 V~~~~~Spdg~~l-asgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D  333 (365)
T 4h5i_A          272 ITSMDVDMKGELA-VLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAA  333 (365)
T ss_dssp             EEEEEECTTSCEE-EEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred             eEeEEECCCCCce-EEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence            6789999999755 555567889999975321  1222322223334678999999988876644

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.77  E-value=2.8e-06  Score=81.10  Aligned_cols=192  Identities=11%  Similarity=0.040  Sum_probs=114.1

Q ss_pred             CCCceEEEecC----C---CEEEEEecCCeEEEEEcCCCCCcc--eeeeeecC-----CCceeeeEEC----CCCCCCCc
Q 016199           83 KGPEDLLYDAH----S---KLIYTGCEDGWIKRVTLNDSPADS--LVHNWINT-----GGRPLGIAFA----NSDPDADR  144 (393)
Q Consensus        83 ~~Pe~ia~d~~----g---~~L~~~~~~g~I~~~~~~~~~~~~--~~~~~~~~-----~~~p~gl~~d----~~G~~~~~  144 (393)
                      ....++++.++    |   +.|++++.+|.|..|+..++....  ....+...     ......+++.    ++|     
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----  137 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-----  137 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---------
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-----
Confidence            44567899998    8   888899999999999887654100  02222222     2567889999    888     


Q ss_pred             eE-EEEEeCCCceEEEeCC-------c--eE-----EEee--ccCCccccccccEEEcCCCcEEEEeCCCccchhhheeh
Q 016199          145 IT-MIVADAYKGLLKISGN-------S--TV-----LLTD--EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILD  207 (393)
Q Consensus       145 ~~-L~v~~~~~gl~~id~~-------g--~~-----~l~~--~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~  207 (393)
                      +. |+++...+.|..+|..       +  ..     .+..  .........+..+++.++| ++++.             
T Consensus       138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-------------  203 (397)
T 1sq9_A          138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG-------------  203 (397)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE-------------
T ss_pred             ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE-------------
Confidence            14 5555545556666532       2  21     2210  0001112346789999999 55553             


Q ss_pred             hcccCCCcEEEEEeCCCCeEEEEecC-------ccCCCcEEEcCCCCEEEEEeCCC---CeEEEEEecCCCCcceeeeec
Q 016199          208 IFEGKPNGRLLSFDPVTKETKVLVSD-------LYFANGVVLSPDQTHLVYCETSM---RRCRKFYIKGKNAGRVEKFIE  277 (393)
Q Consensus       208 ~~e~~~~g~l~~~d~~t~~~~~~~~~-------l~~~ngi~~s~dg~~l~v~~~~~---~ri~~~~~~g~~~~~~~~~~~  277 (393)
                          ...+.|..||..+++.......       ......++++++++.++.+. ..   +.|..|++...+  ....+..
T Consensus       204 ----~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~--~~~~~~~  276 (397)
T 1sq9_A          204 ----FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGE--RIGSLSV  276 (397)
T ss_dssp             ----CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCC--EEEEECB
T ss_pred             ----eCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCc--ccceecc
Confidence                3457899999887765443333       45568899999998766554 45   789999985321  1222221


Q ss_pred             c------------CCCCCCeEEECCCCCEEEEEec
Q 016199          278 T------------LPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       278 ~------------l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      .            ..+....++++++|++.++...
T Consensus       277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          277 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             C--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             CcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence            0            2223456888999987766553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.77  E-value=8.5e-07  Score=85.06  Aligned_cols=100  Identities=12%  Similarity=0.139  Sum_probs=64.6

Q ss_pred             EEEcCCC-cEEEEeC-CCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199          182 VDVADDG-MIYFTDA-SNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC  259 (393)
Q Consensus       182 l~~d~dG-~l~~td~-~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri  259 (393)
                      ++++++| .+|++.. ....+        ......+.|+.+|.++++.......-. |.+++++|||+.||+++.  +.|
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~--------~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v  327 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEG--------THKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNV  327 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTT--------CTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCE
T ss_pred             EEEecCCCeEEEEEccCCCcc--------cccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeE
Confidence            7788875 7887742 00000        000124579999999887654333333 999999999999998875  899


Q ss_pred             EEEEecCCCCcceeeeeccCCCCCCeEEECCCCC
Q 016199          260 RKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH  293 (393)
Q Consensus       260 ~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~  293 (393)
                      ..||.+..+. +....+......|.+++++++|+
T Consensus       328 ~v~D~~t~~l-~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          328 NVYDISQPEP-KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECSSSSC-EEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEECCCCcc-eeeEEeccCCCCcEEEEecCCCC
Confidence            9999753210 22112113345799999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.77  E-value=1.9e-05  Score=72.96  Aligned_cols=156  Identities=13%  Similarity=0.123  Sum_probs=103.5

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      +......+++++++++.|.+++.++.|..|+.+.+.   ....+.........+++.+++     +.|+.+...+.|..+
T Consensus        63 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-----~~l~s~~~d~~i~iw  134 (312)
T 4ery_A           63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQS-----NLIVSGSFDESVRIW  134 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECSSS-----SEEEEEETTSCEEEE
T ss_pred             cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCC-----CEEEEEeCCCcEEEE
Confidence            333456679999999989999999999999987654   133343334557889999988     145555555567778


Q ss_pred             eCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-Eec-Cc
Q 016199          160 SGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVS-DL  234 (393)
Q Consensus       160 d~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~-~l  234 (393)
                      |...   ...+.    .. ...+..+++.++|.++++.                 ...+.|..||..+++... +.. ..
T Consensus       135 d~~~~~~~~~~~----~~-~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~~wd~~~~~~~~~~~~~~~  192 (312)
T 4ery_A          135 DVKTGKCLKTLP----AH-SDPVSAVHFNRDGSLIVSS-----------------SYDGLCRIWDTASGQCLKTLIDDDN  192 (312)
T ss_dssp             ETTTCCEEEEEC----CC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCSSC
T ss_pred             ECCCCEEEEEec----CC-CCcEEEEEEcCCCCEEEEE-----------------eCCCcEEEEECCCCceeeEEeccCC
Confidence            8654   22221    11 1235678899999766653                 234678889987765433 222 22


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .....++++++++.++. .+..+.|..|++..
T Consensus       193 ~~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~  223 (312)
T 4ery_A          193 PPVSFVKFSPNGKYILA-ATLDNTLKLWDYSK  223 (312)
T ss_dssp             CCEEEEEECTTSSEEEE-EETTTEEEEEETTT
T ss_pred             CceEEEEECCCCCEEEE-EcCCCeEEEEECCC
Confidence            33567899999986655 45678999999853

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.77  E-value=4.5e-06  Score=87.77  Aligned_cols=241  Identities=10%  Similarity=0.023  Sum_probs=145.0

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+.-....+++++|+|+.|.+++.+|.|..|+..++.   ....+....+...++++.++|     +.|.++...+.|..
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~v   81 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV---EVRSIQVTETPVRAGKFIARK-----NWIIVGSDDFRIRV   81 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGG-----TEEEEEETTSEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---eEEEEecCCCcEEEEEEeCCC-----CEEEEEeCCCeEEE
Confidence            3333556789999999999999999999999987653   134444445667899999998     24666655555777


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEE-EEecC
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETK-VLVSD  233 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~-~~~~~  233 (393)
                      ++.+.   ...+.    +. ...+..+++.++|...++.                 ...+.|..||..++ ... .+...
T Consensus        82 w~~~~~~~~~~~~----~~-~~~v~~~~~s~~~~~l~~~-----------------~~dg~i~vw~~~~~~~~~~~~~~~  139 (814)
T 3mkq_A           82 FNYNTGEKVVDFE----AH-PDYIRSIAVHPTKPYVLSG-----------------SDDLTVKLWNWENNWALEQTFEGH  139 (814)
T ss_dssp             EETTTCCEEEEEE----CC-SSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEEGGGTSEEEEEEECC
T ss_pred             EECCCCcEEEEEe----cC-CCCEEEEEEeCCCCEEEEE-----------------cCCCEEEEEECCCCceEEEEEcCC
Confidence            78654   22221    11 1235688999999655442                 23567888887665 332 23333


Q ss_pred             ccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC--CCCEEEEEecCcchhhhhhh
Q 016199          234 LYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG--EGHYLIALATEFSTYWDLAY  310 (393)
Q Consensus       234 l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~--~G~lwva~~~~r~~~~~~~~  310 (393)
                      ......++++| |+ ..+++.+..+.|..|++....  ....+..........+++.+  +|.+.++....         
T Consensus       140 ~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------  207 (814)
T 3mkq_A          140 EHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPDKPYMITASDD---------  207 (814)
T ss_dssp             SSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSS--CSEEEECCCTTCCCEEEECCSTTCCEEEEECTT---------
T ss_pred             CCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC---------
Confidence            45567899999 66 455666678899999985432  11222212223345677777  88766655433         


Q ss_pred             cCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeC-CEEEEEecCCCeEEEEeCCCC
Q 016199          311 RYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIG-DHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       311 ~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~-g~Lyigs~~~~~i~~~~~~~~  387 (393)
                                               +.|..+|. +++.+..+........+.....+ ..|..++ ....|..+++...
T Consensus       208 -------------------------g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~  260 (814)
T 3mkq_A          208 -------------------------LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTY  260 (814)
T ss_dssp             -------------------------SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTC
T ss_pred             -------------------------CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCC
Confidence                                     34666664 45666666543322212222233 3455554 4456666676543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.75  E-value=1.9e-06  Score=88.29  Aligned_cols=191  Identities=9%  Similarity=0.035  Sum_probs=114.7

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~~id~  161 (393)
                      ..|..++++|+|+.|.++. ++.|..++.+++.   ....+.........+++.++|      ++++. ...+.|..+|.
T Consensus        19 g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~---~~~~~~~h~~~v~~~~~spdg------~~lasg~~d~~v~lWd~   88 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT---DTEIYTEHSHQTTVAKTSPSG------YYCASGDVHGNVRIWDT   88 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS---CCEEECCCSSCEEEEEECTTS------SEEEEEETTSEEEEEES
T ss_pred             CceeEEeeCCCCCEEEeCC-CCEEEEecCCCcc---cCeEecCCCCceEEEEECCCC------cEEEEEeCCCCEEEeEC
Confidence            4567789999999776665 5688889886543   133443334567899999999      55444 43444666676


Q ss_pred             C-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          162 N-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       162 ~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                      . +...+.....+.. ..+.++++++||...++....+             ...+.++.+|.. .....+.......+.+
T Consensus        89 ~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~~~~-------------~~~~~v~~wd~~-~~~~~l~gh~~~v~~v  153 (611)
T 1nr0_A           89 TQTTHILKTTIPVFS-GPVKDISWDSESKRIAAVGEGR-------------ERFGHVFLFDTG-TSNGNLTGQARAMNSV  153 (611)
T ss_dssp             SSTTCCEEEEEECSS-SCEEEEEECTTSCEEEEEECCS-------------SCSEEEEETTTC-CBCBCCCCCSSCEEEE
T ss_pred             CCCcceeeEeecccC-CceEEEEECCCCCEEEEEECCC-------------CceeEEEEeeCC-CCcceecCCCCCceEE
Confidence            3 2111111111111 2367899999997665531110             123567777743 2222233333456889


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +++|++...+++....+.|..|+...   ++.........+....++++++|++.++....
T Consensus       154 ~f~p~~~~~l~s~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fspdg~~las~s~D  211 (611)
T 1nr0_A          154 DFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD  211 (611)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCC---CeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence            99999987778888888999988642   22111122223334568899999977765543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.75  E-value=2.9e-06  Score=83.02  Aligned_cols=194  Identities=9%  Similarity=0.068  Sum_probs=110.5

Q ss_pred             cCCCceEEEecCCCEEEEEec-C------CeEEEEEcCCCCCcceeeeeecCCCc----eeeeEECCCCCCCCceEEEEE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-D------GWIKRVTLNDSPADSLVHNWINTGGR----PLGIAFANSDPDADRITMIVA  150 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~------g~I~~~~~~~~~~~~~~~~~~~~~~~----p~gl~~d~~G~~~~~~~L~v~  150 (393)
                      ...|..+.+.++|  +|++.. +      |+|..+|.++.+   .+..+. .+..    +..+.+.+++     +.+++.
T Consensus       137 ~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~---v~~~~~-~~~~~~~~~Yd~~~~p~~-----~~mvsS  205 (462)
T 2ece_A          137 YSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE---PLGKWE-IDRGDQYLAYDFWWNLPN-----EVLVSS  205 (462)
T ss_dssp             EEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC---EEEECC-SBCTTCCCCCCEEEETTT-----TEEEEC
T ss_pred             CCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe---EEEEEc-cCCCCccccceEEECCCC-----CEEEEc
Confidence            3578889999998  776543 3      689999988765   133332 2222    3446667777     245555


Q ss_pred             eC-------------------CCceEEEeCCceEEEeeccCCccccccccEEE--cCCC-cEEEEeCCCccchhhheehh
Q 016199          151 DA-------------------YKGLLKISGNSTVLLTDEAEGQKFKLTDGVDV--ADDG-MIYFTDASNKYYLREYILDI  208 (393)
Q Consensus       151 ~~-------------------~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~--d~dG-~l~~td~~~~~~~~~~~~~~  208 (393)
                      ++                   .+.|..+|.+..+.+..-.-+.....+..|.+  +++| .+|++..-+           
T Consensus       206 ~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~-----------  274 (462)
T 2ece_A          206 EWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVS-----------  274 (462)
T ss_dssp             BCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEE-----------
T ss_pred             cCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeee-----------
Confidence            42                   34577888754111111111111122445555  8998 688875200           


Q ss_pred             cccCCCcEEEEEeCCCCeEEEEe-----c-----C-----------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          209 FEGKPNGRLLSFDPVTKETKVLV-----S-----D-----------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       209 ~e~~~~g~l~~~d~~t~~~~~~~-----~-----~-----------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                       ...-++.|+.|..+.++.+...     .     .           -..|.+|.+++||++|||++...+.|..|++...
T Consensus       275 -~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          275 -LKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             -TTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             -ccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence             0002234443322224432211     1     0           1458899999999999999999999999998632


Q ss_pred             CCcc-eeee-ec------------cCCCCCCeEEECCCCC-EEEEE
Q 016199          268 NAGR-VEKF-IE------------TLPGLPDNIRYDGEGH-YLIAL  298 (393)
Q Consensus       268 ~~~~-~~~~-~~------------~l~g~P~~i~~d~~G~-lwva~  298 (393)
                      ...+ ...+ ..            .+.+.|.++++++||+ +|++.
T Consensus       354 ~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          354 FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            2111 1111 11            1223599999999998 55554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.74  E-value=2.3e-06  Score=81.81  Aligned_cols=215  Identities=13%  Similarity=0.142  Sum_probs=115.2

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce------eeeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceEEEe
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP------LGIAFANSDPDADRITMIVADAYKGLLKISGN-STVLLT  168 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p------~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l~  168 (393)
                      .+|+++.++.|+.++..+++    ...........      ...+.+ +|      .+|++...++|+.+|++ |.....
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~-~~------~v~~g~~~g~l~~~d~~tG~~~w~  213 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGA----VKWTVNLDMPSLSLRGESAPTTA-FG------AAVVGGDNGRVSAVLMEQGQMIWQ  213 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCC----EEEEEECCC-----CCCCCCEEE-TT------EEEECCTTTEEEEEETTTCCEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCc----EEEEEeCCCCceeecCCCCcEEE-CC------EEEEEcCCCEEEEEECCCCcEEEE
Confidence            46777767777777765543    22111111111      122232 56      88888666678999874 422222


Q ss_pred             eccCCcc-------ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEE
Q 016199          169 DEAEGQK-------FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVV  241 (393)
Q Consensus       169 ~~~~g~~-------~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~  241 (393)
                      .......       +.......+..+|.+|++.                  ..++|+++|+.+++..-... .....++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~------------------~~g~l~~~d~~tG~~~w~~~-~~~~~~~~  274 (376)
T 3q7m_A          214 QRISQATGSTEIDRLSDVDTTPVVVNGVVFALA------------------YNGNLTALDLRSGQIMWKRE-LGSVNDFI  274 (376)
T ss_dssp             EECCC-----------CCCCCCEEETTEEEEEC------------------TTSCEEEEETTTCCEEEEEC-CCCEEEEE
T ss_pred             EecccCCCCcccccccccCCCcEEECCEEEEEe------------------cCcEEEEEECCCCcEEeecc-CCCCCCce
Confidence            1111100       0001111112367888883                  35689999998887543222 22233344


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhh
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSG  320 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~  320 (393)
                      +  +++.+|+... .++|+.++.+.   ++..-..+.++ .......+. +|.+|++...                    
T Consensus       275 ~--~~~~l~~~~~-~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~--------------------  327 (376)
T 3q7m_A          275 V--DGNRIYLVDQ-NDRVMALTIDG---GVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSE--------------------  327 (376)
T ss_dssp             E--ETTEEEEEET-TCCEEEEETTT---CCEEEEECTTTTSCCCCCEEE-TTEEEEECTT--------------------
T ss_pred             E--ECCEEEEEcC-CCeEEEEECCC---CcEEEeecccCCCcccCCEEE-CCEEEEEeCC--------------------
Confidence            4  3557888764 67899999742   22221111111 112223333 5789998753                    


Q ss_pred             hhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEe
Q 016199          321 MVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLD  383 (393)
Q Consensus       321 ~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~  383 (393)
                                     +.|+.+|+ +|+++..+........+.....+++||+++. +..|..|+
T Consensus       328 ---------------g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~-~G~l~~~~  375 (376)
T 3q7m_A          328 ---------------GYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAK-DGTVYSIT  375 (376)
T ss_dssp             ---------------SEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBT-TSCEEEEE
T ss_pred             ---------------CeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeC-CCEEEEEe
Confidence                           46999995 6888877765321222223446899999974 34677775

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.74  E-value=1.1e-05  Score=78.23  Aligned_cols=186  Identities=11%  Similarity=0.143  Sum_probs=117.8

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....+++++++|+.|.+++.|+.|..|+..+..   ....+.........+++.++|     +.|+.+...+-|..+|..
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~---~~~~~~~h~~~V~~v~~~p~~-----~~l~s~s~D~~i~~wd~~  222 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFE---CIRTMHGHDHNVSSVSIMPNG-----DHIVSASRDKTIKMWEVQ  222 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSC---EEECCCCCSSCEEEEEECSSS-----SEEEEEETTSEEEEEETT
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCEEEEEEeCCC-----CEEEEEeCCCeEEEEECC
Confidence            345678999999988899999999999987653   123333334567899999988     135555445557777865


Q ss_pred             c---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCC
Q 016199          163 S---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFAN  238 (393)
Q Consensus       163 g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~n  238 (393)
                      .   ...+.    +. ...+..+.+.++|.++++.                 ...+.|..||..+++..... ......+
T Consensus       223 ~~~~~~~~~----~h-~~~v~~~~~~~~g~~l~s~-----------------s~D~~v~vwd~~~~~~~~~~~~h~~~v~  280 (410)
T 1vyh_C          223 TGYCVKTFT----GH-REWVRMVRPNQDGTLIASC-----------------SNDQTVRVWVVATKECKAELREHRHVVE  280 (410)
T ss_dssp             TCCEEEEEE----CC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCcEEEEEe----CC-CccEEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCceeeEecCCCceEE
Confidence            4   22221    11 1235678889999877763                 33467888888776654433 2334456


Q ss_pred             cEEEcCCC-------------------CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          239 GVVLSPDQ-------------------THLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       239 gi~~s~dg-------------------~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .++++|++                   ..++++.+..+.|..|++....  ....+. ...+....++++++|++.++..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~-~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEE-CCCCcEEEEEEcCCCCEEEEEe
Confidence            77888762                   1355666778899999985321  122222 2233345788999998776655


Q ss_pred             cC
Q 016199          300 TE  301 (393)
Q Consensus       300 ~~  301 (393)
                      ..
T Consensus       358 ~D  359 (410)
T 1vyh_C          358 DD  359 (410)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.74  E-value=2.3e-06  Score=81.60  Aligned_cols=192  Identities=15%  Similarity=0.178  Sum_probs=112.3

Q ss_pred             EEEecCCCEEEEEec-CC--eEEEEEcCCCCCcceeeeeecCCCce-eeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           88 LLYDAHSKLIYTGCE-DG--WIKRVTLNDSPADSLVHNWINTGGRP-LGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~-~g--~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ++++|||+.|++... ++  .|+.++.+++.    ........... .+.++.++|     +.|+++.....|+.+|.++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~spdg-----~~l~~~~~~~~l~~~d~~~  111 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV----ATQLTEGRGDNTFGGFLSPDD-----DALFYVKDGRNLMRVDLAT  111 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCE----EEECCCSSCBCSSSCEECTTS-----SEEEEEETTTEEEEEETTT
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc----eEEeeeCCCCCccceEEcCCC-----CEEEEEeCCCeEEEEECCC
Confidence            568999997766655 55  59999988765    44443322222 367899998     3577776566799999876


Q ss_pred             --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccc---hhhh--eehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYY---LREY--ILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF  236 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~---~~~~--~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~  236 (393)
                        ...+.....+..  .......+++|.++++....+..   ...+  +...........|+.+|..+++.+.+......
T Consensus       112 g~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~  189 (388)
T 3pe7_A          112 LEENVVYQVPAEWV--GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW  189 (388)
T ss_dssp             CCEEEEEECCTTEE--EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC
T ss_pred             Ccceeeeechhhcc--cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc
Confidence              333322111110  00122457888766642110000   0000  01122334457899999999988877665556


Q ss_pred             CCcEEEcC-CCCEEEEEeCC-----CCeEEEEEecCCCCcceeeeeccCCC-CCCeEEECCCCC
Q 016199          237 ANGVVLSP-DQTHLVYCETS-----MRRCRKFYIKGKNAGRVEKFIETLPG-LPDNIRYDGEGH  293 (393)
Q Consensus       237 ~ngi~~s~-dg~~l~v~~~~-----~~ri~~~~~~g~~~~~~~~~~~~l~g-~P~~i~~d~~G~  293 (393)
                      ...++++| ||+.|+++...     ..+|+.+++++..   ...+.....+ .....++++||+
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECTTSS
T ss_pred             ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECCCCC
Confidence            67899999 99877665543     4489999876532   2222211111 122467899998

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.73  E-value=1.2e-06  Score=81.86  Aligned_cols=186  Identities=10%  Similarity=-0.038  Sum_probs=112.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE--EEEEeCCCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT--MIVADAYKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~--L~v~~~~~gl~~id  160 (393)
                      ....+++++++++.|++++.++.|..|+.+.+..................+++.++|      +  |+++...+.|..++
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT------DLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS------SEEEEEEETTSCEEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC------CcEEEEEcCCCeEEEEE
Confidence            345678999999989999999999999887543111122222334567899999999      6  56665556688888


Q ss_pred             C-Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC---------CeEE
Q 016199          161 G-NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT---------KETK  228 (393)
Q Consensus       161 ~-~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t---------~~~~  228 (393)
                      . ++  ...+...  .. ...+..+++.+ +.++++.                 ...+.|..||..+         ++..
T Consensus        86 ~~~~~~~~~~~~~--~~-~~~v~~l~~~~-~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           86 LIGSPSFQALTNN--EA-NLGICRICKYG-DDKLIAA-----------------SWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             SSSSSSEEECBSC--CC-CSCEEEEEEET-TTEEEEE-----------------ETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             eccCCceEecccc--CC-CCceEEEEeCC-CCEEEEE-----------------cCCCeEEEEcccccccccccccCCee
Confidence            7 65  3222110  01 12356788888 7655553                 2346788887653         2211


Q ss_pred             EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC-CCCcceeeeeccCCCCCCeEEECC-CCCEEEEEe
Q 016199          229 VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG-KNAGRVEKFIETLPGLPDNIRYDG-EGHYLIALA  299 (393)
Q Consensus       229 ~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g-~~~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~  299 (393)
                      .....-..+..+++++++  + ++.+..+.|..|++.. ... ...............+++++ +|+++++..
T Consensus       145 ~~~~~~~~v~~~~~~~~~--l-~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          145 NNTKVKNKIFTMDTNSSR--L-IVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             SSSSSCCCEEEEEECSSE--E-EEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             eEEeeCCceEEEEecCCc--E-EEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence            111122345678888876  4 4445678999999864 221 11112212333456788898 888666554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.73  E-value=8.5e-06  Score=75.55  Aligned_cols=237  Identities=13%  Similarity=0.018  Sum_probs=139.4

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      -.++++.++++.|.+++.++.|..|+.+++.   ....+.........+++.+++     ..|..+...+.|..+|... 
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~-----~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPTK-----PYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECSSS-----SEEEEEETTSCEEEEEGGGT
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCc---EEEEEeCCCCcEEEEEEcCCC-----CEEEEECCCCeEEEEECCCC
Confidence            3568899999999999999999999988654   134444445667899999998     1344554455577777543 


Q ss_pred             eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEecC-ccCCCcE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSD-LYFANGV  240 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~~~-l~~~ngi  240 (393)
                      .... ....+.. ..+..+++.| ++.++++-                 ...+.|..||..++... .+..+ ....+.+
T Consensus       130 ~~~~-~~~~~h~-~~v~~v~~~p~~~~~l~sg-----------------s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~  190 (304)
T 2ynn_A          130 WALE-QTFEGHE-HFVMCVAFNPKDPSTFASG-----------------CLDRTVKVWSLGQSTPNFTLTTGQERGVNYV  190 (304)
T ss_dssp             TEEE-EEECCCC-SCEEEEEECTTCTTEEEEE-----------------ETTSEEEEEETTCSSCSEEEECCCTTCEEEE
T ss_pred             cchh-hhhcccC-CcEEEEEECCCCCCEEEEE-----------------eCCCeEEEEECCCCCccceeccCCcCcEEEE
Confidence            1111 1122221 3466889998 56666553                 33567888887554322 22222 2234556


Q ss_pred             EEcC--CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhh
Q 016199          241 VLSP--DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       241 ~~s~--dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      ++.+  +++ ++++.+..+.|..|++...+  ....+. ........+++++++.+.++....                 
T Consensus       191 ~~~~~~~~~-~l~s~s~D~~i~iWd~~~~~--~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~D-----------------  249 (304)
T 2ynn_A          191 DYYPLPDKP-YMITASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSED-----------------  249 (304)
T ss_dssp             EECCSTTCC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEETT-----------------
T ss_pred             EEEEcCCCC-EEEEEcCCCeEEEEeCCCCc--cceeeC-CCCCCEEEEEECCCCCEEEEEcCC-----------------
Confidence            6765  554 55666678899999985321  112222 222223457789999877665543                 


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEE-EEeCCEEEEEecCCCeEEEEeCCC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSA-IKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~-~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                                       +.|...|. .++....+........+.. .+.++..|+.+-..+++..+++.+
T Consensus       250 -----------------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          250 -----------------GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             -----------------SCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             -----------------CeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence                             34666775 4677777664332211222 233444455555678888887754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.72  E-value=2.1e-05  Score=73.51  Aligned_cols=194  Identities=10%  Similarity=0.074  Sum_probs=116.5

Q ss_pred             cCccCCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCc--ceeeeeecCCCceeeeEECCCCCCCCceEE-EEEeCCC
Q 016199           79 YGVLKGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPAD--SLVHNWINTGGRPLGIAFANSDPDADRITM-IVADAYK  154 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~--~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L-~v~~~~~  154 (393)
                      .|....-.++++.+++ +.|.+++.|+.|..|+..+....  .....+.........+++.++|      ++ ..+..++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg------~~l~s~s~D~   87 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG------AYALSASWDK   87 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS------SEEEEEETTS
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC------CEEEEEeCCC
Confidence            4443455678898854 67889999999998887542210  0122333334557889999998      54 4554455


Q ss_pred             ceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc
Q 016199          155 GLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL  234 (393)
Q Consensus       155 gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l  234 (393)
                      -|..+|....+.+. ...+.. ..+..+++++++.++++-                 ...+.|..||..++....+....
T Consensus        88 ~v~~wd~~~~~~~~-~~~~h~-~~v~~~~~~~~~~~l~s~-----------------s~D~~i~vwd~~~~~~~~~~~h~  148 (319)
T 3frx_A           88 TLRLWDVATGETYQ-RFVGHK-SDVMSVDIDKKASMIISG-----------------SRDKTIKVWTIKGQCLATLLGHN  148 (319)
T ss_dssp             EEEEEETTTTEEEE-EEECCS-SCEEEEEECTTSCEEEEE-----------------ETTSCEEEEETTSCEEEEECCCS
T ss_pred             EEEEEECCCCCeeE-EEccCC-CcEEEEEEcCCCCEEEEE-----------------eCCCeEEEEECCCCeEEEEeccC
Confidence            57777865411111 111211 235688999999877663                 33456888888766665555444


Q ss_pred             cCCCcEEEcCCCC-----EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          235 YFANGVVLSPDQT-----HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       235 ~~~ngi~~s~dg~-----~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      .....+++.++++     ..+++....+.|..|++...+  ....+. ...+....++++++|++.++...
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~  216 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTASPDGTLIASAGK  216 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence            4556777777532     356667778899999985321  111222 22223456889999997776553

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.70  E-value=4.5e-06  Score=81.56  Aligned_cols=193  Identities=8%  Similarity=0.057  Sum_probs=118.0

Q ss_pred             CCCceEEEecC-CCEEEEEecCCeEEEEEcCCCCC-------cceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC
Q 016199           83 KGPEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPA-------DSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK  154 (393)
Q Consensus        83 ~~Pe~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~-------~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~  154 (393)
                      ..+.++++.++ ++.|++++.+|.|..|+......       ......+......+.++++.+++.    ..|..+...+
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~----~~l~s~~~dg  204 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN----GYLLSASDDH  204 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST----TEEEEECTTS
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC----CeEEEEeCCC
Confidence            56788999997 56777888899999999864100       011233333345678999998871    0344454344


Q ss_pred             ceEEEeCCc----eEEEe--eccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC--
Q 016199          155 GLLKISGNS----TVLLT--DEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK--  225 (393)
Q Consensus       155 gl~~id~~g----~~~l~--~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~--  225 (393)
                      .|..++.+.    ...+.  ....+. ...++++++.+ ++.++++.                 ...+.|..||..++  
T Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~l~s~-----------------~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          205 TICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAWHLLHESLFGSV-----------------ADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             CEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEETTCSCS
T ss_pred             eEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEEeCCCCCEEEEE-----------------eCCCeEEEEECCCCCC
Confidence            566777542    11111  111111 13467899998 55777664                 34578999998765  


Q ss_pred             --eEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEe
Q 016199          226 --ETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALA  299 (393)
Q Consensus       226 --~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~  299 (393)
                        ....+......++.++++++++.++++....+.|..|++...+ .....+. ...+....++++++|. ++++..
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFE-SHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEE-CCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEee-cCCCCEEEEEECCCCCCEEEEEe
Confidence              2233333345578899999998888888888999999986421 1122222 2233345688899886 444443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.70  E-value=2.5e-06  Score=81.18  Aligned_cols=186  Identities=10%  Similarity=0.070  Sum_probs=106.4

Q ss_pred             ceEEEecCCCEEEEEecCC-------eEEEEEcCCC-CCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           86 EDLLYDAHSKLIYTGCEDG-------WIKRVTLNDS-PADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g-------~I~~~~~~~~-~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      ++++|.+||++|..++ ++       .+..++.... ..................+++.+++      .|..+...+-|.
T Consensus        34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~------~l~~~s~dg~v~  106 (344)
T 4gqb_B           34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER------GILVASDSGAVE  106 (344)
T ss_dssp             EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT------EEEEEETTSEEE
T ss_pred             EEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC------eEEEEECCCEEE
Confidence            4688999998665444 33       2333321100 0000001111112346789999999      888886655566


Q ss_pred             EEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-C
Q 016199          158 KISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-D  233 (393)
Q Consensus       158 ~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~  233 (393)
                      .+|.+.   ...+.....+.. ..+..+++.++|+..++-                 ...+.|..+|..+++...... .
T Consensus       107 lWd~~~~~~~~~~~~~~~~H~-~~V~~v~~spdg~~l~sg-----------------s~d~~i~iwd~~~~~~~~~~~~h  168 (344)
T 4gqb_B          107 LWELDENETLIVSKFCKYEHD-DIVSTVSVLSSGTQAVSG-----------------SKDICIKVWDLAQQVVLSSYRAH  168 (344)
T ss_dssp             EEEECTTSSCEEEEEEEECCS-SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEeccCCCceeEeeccccCCC-CCEEEEEECCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEcCc
Confidence            667543   222221111211 346789999999877663                 334678899988876544333 3


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCeEEECCC-CCEEEEE
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYDGE-GHYLIAL  298 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d~~-G~lwva~  298 (393)
                      ....+.+++++++..++++....+.|..||+...+.  ...+..... .....+++.++ +++.++.
T Consensus       169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             CCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEe
Confidence            445678999999987888888889999999853321  111211111 12445777775 4555543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.69  E-value=5e-07  Score=85.97  Aligned_cols=188  Identities=6%  Similarity=-0.018  Sum_probs=107.8

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeCCCceEEEeCC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADAYKGLLKISGN  162 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~~~gl~~id~~  162 (393)
                      .-.+++++++|+.|.+++.++.|..|+.+++. ......+.........+++.++|      + |..+...+.|..+|.+
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~------~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKS------NRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTT------CCEEEEETTSSEEEC---
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCC------CEEEEEeCCCeEEEEEcC
Confidence            34568999999988888889988888887541 00122333334567899999998      5 4555445556666754


Q ss_pred             c-e---EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe----EEEEec-C
Q 016199          163 S-T---VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE----TKVLVS-D  233 (393)
Q Consensus       163 g-~---~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~----~~~~~~-~  233 (393)
                      . .   ...  ...+. ...+..+++.++|.++++-                 ...+.|..||..+++    ...+.. .
T Consensus        86 ~~~~~~~~~--~~~~~-~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           86 PDGTWKQTL--VLLRL-NRAATFVRWSPNEDKFAVG-----------------SGARVISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             ---CCCCEE--ECCCC-SSCEEEEECCTTSSCCEEE-----------------ESSSCEEECCC-----CCCCEEECSSC
T ss_pred             CCCceeeee--Eeccc-CCceEEEEECCCCCEEEEE-----------------ecCCeEEEEEECCcccceeeeEeeccc
Confidence            4 2   111  11111 1235688899998654442                 234568888877654    344433 3


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc------------eeeeec--cCCCCCCeEEECCCCCEEEEEe
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR------------VEKFIE--TLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~------------~~~~~~--~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ......+++++|++.++. ....+.|..|++.......            ......  ...+....++++++|++.++..
T Consensus       146 ~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  224 (377)
T 3dwl_C          146 RSTILSLDWHPNNVLLAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG  224 (377)
T ss_dssp             CSCEEEEEECTTSSEEEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE
T ss_pred             CCCeEEEEEcCCCCEEEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe
Confidence            455688999999976554 4457889999985221000            011111  1122345678899998666554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.69  E-value=2.4e-05  Score=75.33  Aligned_cols=187  Identities=11%  Similarity=0.075  Sum_probs=110.8

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC------------------CCceeeeEECCCCCCCCc
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT------------------GGRPLGIAFANSDPDADR  144 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~------------------~~~p~gl~~d~~G~~~~~  144 (393)
                      ..-.+++|+++|+.|.++. ++.+..|+..++..   ...+...                  ......+++.++|     
T Consensus        65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-----  135 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-----  135 (393)
T ss_dssp             SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---EEEECC-----------------CCCCBEEEEEECTTS-----
T ss_pred             CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---EEEecCccccccccccccccccCCCceeEEEEEECCCC-----
Confidence            3456799999999776655 56788888765540   1111110                  0125689999998     


Q ss_pred             eEEEEEeCCCceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          145 ITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       145 ~~L~v~~~~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      +.|..+...+.|..+|.+..+.+. ...+.. ..+..+++.++|...++.                 ...+.|..||..+
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~-~~v~~~~~~p~~~~l~s~-----------------s~d~~v~iwd~~~  196 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVM-ILQGHE-QDIYSLDYFPSGDKLVSG-----------------SGDRTVRIWDLRT  196 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEE-EECCCS-SCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTT
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEE-EEccCC-CCEEEEEEcCCCCEEEEe-----------------cCCCcEEEEECCC
Confidence            134455445557777875511111 111211 235688999999766653                 3456788999988


Q ss_pred             CeEEEEecCccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeee------ccCCCCCCeEEECCCCCEEEE
Q 016199          225 KETKVLVSDLYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI------ETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       225 ~~~~~~~~~l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~------~~l~g~P~~i~~d~~G~lwva  297 (393)
                      ++.............+++++ |++. +++....+.|..|++....  ....+.      .........++++++|++.++
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          197 GQCSLTLSIEDGVTTVAVSPGDGKY-IAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCE-EEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             CeeEEEEEcCCCcEEEEEECCCCCE-EEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence            77654443334456788998 7754 4555667889999875321  111111      011122345788999987766


Q ss_pred             Eec
Q 016199          298 LAT  300 (393)
Q Consensus       298 ~~~  300 (393)
                      ...
T Consensus       274 ~s~  276 (393)
T 1erj_A          274 GSL  276 (393)
T ss_dssp             EET
T ss_pred             EeC
Confidence            543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.69  E-value=1.2e-05  Score=76.50  Aligned_cols=187  Identities=11%  Similarity=0.035  Sum_probs=115.3

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LL  157 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~  157 (393)
                      .|....-.++++++++++|.+++.||.|..|+..+..   ....+.........+++.++|      .++++....+ +.
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~~~~v~~~~~sp~g------~~lasg~~d~~i~  131 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN---KEHAVTMPCTWVMACAYAPSG------CAIACGGLDNKCS  131 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECSSSCCCEEEECTTS------SEEEEESTTSEEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---cceEEecCCCCEEEEEECCCC------CEEEEeeCCCCEE
Confidence            4544556779999999999999999999999976553   122333334557889999999      6655545444 44


Q ss_pred             EEeCCc---------eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          158 KISGNS---------TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       158 ~id~~g---------~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      .++...         ...+.    + ....+..+.+.+++...++.                 ...+.|..||..+++..
T Consensus       132 v~~~~~~~~~~~~~~~~~~~----~-h~~~v~~~~~~~~~~~l~t~-----------------s~D~~v~lwd~~~~~~~  189 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVA----M-HTNYLSACSFTNSDMQILTA-----------------SGDGTCALWDVESGQLL  189 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEE----E-CSSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEETTTCCEE
T ss_pred             EEEEeccccccccccceeee----c-cCCcEEEEEEeCCCCEEEEE-----------------eCCCcEEEEeCCCCeEE
Confidence            444311         11111    1 11235578888888655553                 34567889998877654


Q ss_pred             E-EecCccCCCcEEEcCC--CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          229 V-LVSDLYFANGVVLSPD--QTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       229 ~-~~~~l~~~ngi~~s~d--g~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      . +.........++++++  ++ ++++....+.|..|++...+  ....+. ........++++++|++.++...
T Consensus       190 ~~~~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          190 QSFHGHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQ--CVQAFE-THESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             EEEECCSSCEEEEEECCCSSCC-EEEEEETTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEcCCCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCc--EEEEec-CCCCCeEEEEEeCCCCEEEEEeC
Confidence            3 3323334456777764  44 55666678899999985321  122222 22233456888999987766543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.69  E-value=5.2e-06  Score=79.17  Aligned_cols=243  Identities=13%  Similarity=0.083  Sum_probs=142.3

Q ss_pred             CCCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCC---CceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           83 KGPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG---GRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~---~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      ....++++.+ +++.|++++.++.|..|+..+..    ...+....   .....+++.++|     +.|+.+...+.|..
T Consensus       119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~i  189 (383)
T 3ei3_B          119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV----IQVFAKTDSWDYWYCCVDVSVSR-----QMLATGDSTGRLLL  189 (383)
T ss_dssp             CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----EEEEECCCCSSCCEEEEEEETTT-----TEEEEEETTSEEEE
T ss_pred             CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----eEEEeccCCCCCCeEEEEECCCC-----CEEEEECCCCCEEE
Confidence            4456789999 66788889999999999988644    44443222   447889999988     24566655566778


Q ss_pred             EeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCC----CeEEEEe
Q 016199          159 ISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT----KETKVLV  231 (393)
Q Consensus       159 id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t----~~~~~~~  231 (393)
                      +|.++  ...+...     ...+..+++.+++. ++++.                 ...+.|..||..+    +......
T Consensus       190 ~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~  247 (383)
T 3ei3_B          190 LGLDGHEIFKEKLH-----KAKVTHAEFNPRCDWLMATS-----------------SVDATVKLWDLRNIKDKNSYIAEM  247 (383)
T ss_dssp             EETTSCEEEEEECS-----SSCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred             EECCCCEEEEeccC-----CCcEEEEEECCCCCCEEEEE-----------------eCCCEEEEEeCCCCCcccceEEEe
Confidence            88766  2222211     13466899999996 66653                 3356788888765    3333333


Q ss_pred             cCccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc---CC--CCCCeEEECCCCCEEEEEecCcchh
Q 016199          232 SDLYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET---LP--GLPDNIRYDGEGHYLIALATEFSTY  305 (393)
Q Consensus       232 ~~l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~---l~--g~P~~i~~d~~G~lwva~~~~r~~~  305 (393)
                      ........+++++ |++.++.+ ...+.|..|++...+..  ..+...   ..  ..+-.....+++.+.......... 
T Consensus       248 ~~~~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-  323 (383)
T 3ei3_B          248 PHEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYDWSKP--DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-  323 (383)
T ss_dssp             ECSSCEEEEEECTTTSCEEEEE-ESSSEEEEEETTBTTSC--SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-
T ss_pred             cCCCceEEEEEcCCCCCEEEEE-cCCCcEEEEECCCCccc--cccccccccccccccceEEeccCCCCceEEEecCCcc-
Confidence            3445678899999 99766554 46789999998643211  111100   00  012223455555544433322110 


Q ss_pred             hhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC-CCccEE-EEE-eCCEEEEEecCCCeEEE
Q 016199          306 WDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE-MSLISS-AIK-IGDHLYCGSVHHRGILH  381 (393)
Q Consensus       306 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~-~~~~~~-~~~-~~g~Lyigs~~~~~i~~  381 (393)
                                              ......+.|..+|. +++.+..+..+. ...++. ... ++..|..|+  ...|..
T Consensus       324 ------------------------~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s--d~~i~i  377 (383)
T 3ei3_B          324 ------------------------LLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM--GFNILI  377 (383)
T ss_dssp             ------------------------TCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE--TTEEEE
T ss_pred             ------------------------cccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec--CCcEEE
Confidence                                    00111245777785 588888876432 222222 233 345555553  667888


Q ss_pred             EeCCC
Q 016199          382 LDVNQ  386 (393)
Q Consensus       382 ~~~~~  386 (393)
                      .++++
T Consensus       378 w~~~~  382 (383)
T 3ei3_B          378 WNRED  382 (383)
T ss_dssp             EECC-
T ss_pred             EecCC
Confidence            88754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.68  E-value=1.2e-06  Score=91.34  Aligned_cols=140  Identities=9%  Similarity=0.037  Sum_probs=91.9

Q ss_pred             CCCceEEEecCCCEEEEEec-CC-----eEEEEEcCCCCCcceeeeeecC-C------------------------Ccee
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DG-----WIKRVTLNDSPADSLVHNWINT-G------------------------GRPL  131 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g-----~I~~~~~~~~~~~~~~~~~~~~-~------------------------~~p~  131 (393)
                      ..+.++++++||+.|+++.. ++     .|+.++.+++.    ....... .                        ....
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ----TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC----EEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc----eeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            45678999999998888776 77     79999988765    3333221 1                        1246


Q ss_pred             eeEECCCCCCCCceEEEEEeCCCceEEEeCCce---EEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheeh
Q 016199          132 GIAFANSDPDADRITMIVADAYKGLLKISGNST---VLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILD  207 (393)
Q Consensus       132 gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~---~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~  207 (393)
                      .+++++||     +.|+++. ...|+.++.++.   +..  ..... ...+..++++|||+ |.++.             
T Consensus       113 ~~~~SpDg-----~~l~~~~-~~~i~~~d~~~~~~~~~~--~l~~~-~~~~~~~~~SPDG~~la~~~-------------  170 (741)
T 2ecf_A          113 DYQWSPDA-----QRLLFPL-GGELYLYDLKQEGKAAVR--QLTHG-EGFATDAKLSPKGGFVSFIR-------------  170 (741)
T ss_dssp             CCEECTTS-----SEEEEEE-TTEEEEEESSSCSTTSCC--BCCCS-SSCEEEEEECTTSSEEEEEE-------------
T ss_pred             eeEECCCC-----CEEEEEe-CCcEEEEECCCCCcceEE--EcccC-CcccccccCCCCCCEEEEEe-------------
Confidence            78999999     2455554 466888886542   211  11111 12356789999996 55542             


Q ss_pred             hcccCCCcEEEEEeCCCCeEEEEecCcc-----------------CCCcEEEcCCCCEEEEEeC
Q 016199          208 IFEGKPNGRLLSFDPVTKETKVLVSDLY-----------------FANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       208 ~~e~~~~g~l~~~d~~t~~~~~~~~~l~-----------------~~ngi~~s~dg~~l~v~~~  254 (393)
                            .+.|+.+|..+++...+.....                 .+.+++++|||+.|+++..
T Consensus       171 ------~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          171 ------GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             ------TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             ------CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence                  2379999998887765543221                 1478999999998887754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.67  E-value=8.7e-06  Score=77.03  Aligned_cols=188  Identities=13%  Similarity=0.044  Sum_probs=111.9

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee--ecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW--INTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~--~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ..++++|+|+.|.+++.|+.|..|+.+++...  ....  .........+++.++|     +.|..+...+.+..++.+.
T Consensus        20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g-----~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCG-----NYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTS-----SEEEEEETTSCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCC-----CEEEEEECCCcEEEEEccC
Confidence            46899999998888999999999987754300  0111  1123457899999998     1344554445566666443


Q ss_pred             --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE----EEEecCccCC
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET----KVLVSDLYFA  237 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~----~~~~~~l~~~  237 (393)
                        .+.+ ....+.. ..+..+++.++|+++++-                 ...+.|..||..++..    ..+.......
T Consensus        93 ~~~~~~-~~~~~h~-~~v~~v~~sp~~~~l~s~-----------------s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           93 DDFECV-TTLEGHE-NEVKSVAWAPSGNLLATC-----------------SRDKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             C-EEEE-EEECCCS-SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             CCeEEE-EEccCCC-CCceEEEEeCCCCEEEEE-----------------ECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence              2222 1222221 346789999999877663                 2345677777654421    2222233446


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ..++++|+++.+ ++.+..+.|..|+...........+. ...+....++++++|++.++....
T Consensus       154 ~~~~~~p~~~~l-~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          154 KHVVWHPSQELL-ASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             EEEEECSSSSCE-EEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCEE-EEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCC
Confidence            789999999755 55556788888887532111111121 222334568899999877665433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.67  E-value=1.2e-05  Score=76.84  Aligned_cols=219  Identities=12%  Similarity=0.113  Sum_probs=123.6

Q ss_pred             CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCcee-eeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceEEEeeccC
Q 016199           95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL-GIAFANSDPDADRITMIVADAYKGLLKISGN-STVLLTDEAE  172 (393)
Q Consensus        95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~-gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l~~~~~  172 (393)
                      +.+|+++.++.|+.++.++++    ............ .... .+|      .+|++...++|+.+|.+ |.........
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~----~~W~~~~~~~~~~~p~~-~~~------~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGT----VAWQTKVAGEALSRPVV-SDG------LVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCC----EEEEEECSSCCCSCCEE-ETT------EEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEcCCCEEEEEECCCCC----EEEEEeCCCceEcCCEE-ECC------EEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            469999999999999988765    322212222211 1222 367      89999777779999974 5323322221


Q ss_pred             Cccc--cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-Ccc-----------CCC
Q 016199          173 GQKF--KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLY-----------FAN  238 (393)
Q Consensus       173 g~~~--~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~-----------~~n  238 (393)
                      ....  .......++ +|.+|++                  ...++|+.+|+.+++..-... ...           ...
T Consensus       173 ~~~~~~~~~~~~~~~-~~~v~~g------------------~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~  233 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA-FGAAVVG------------------GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT  233 (376)
T ss_dssp             C-----CCCCCCEEE-TTEEEEC------------------CTTTEEEEEETTTCCEEEEEECCC-----------CCCC
T ss_pred             CCceeecCCCCcEEE-CCEEEEE------------------cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCC
Confidence            1111  111122333 6788887                  345689999998876542211 100           001


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhh
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      ...+  ++..+|+.. ..++++.++.+.   ++.. +....+ .+..+..+ ++++|++...                  
T Consensus       234 ~p~~--~~~~v~~~~-~~g~l~~~d~~t---G~~~-w~~~~~-~~~~~~~~-~~~l~~~~~~------------------  286 (376)
T 3q7m_A          234 TPVV--VNGVVFALA-YNGNLTALDLRS---GQIM-WKRELG-SVNDFIVD-GNRIYLVDQN------------------  286 (376)
T ss_dssp             CCEE--ETTEEEEEC-TTSCEEEEETTT---CCEE-EEECCC-CEEEEEEE-TTEEEEEETT------------------
T ss_pred             CcEE--ECCEEEEEe-cCcEEEEEECCC---CcEE-eeccCC-CCCCceEE-CCEEEEEcCC------------------
Confidence            1112  234677765 467899999742   2222 221222 13345554 6789998763                  


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                                       +.|+.+|+ +|++............+.....+++||+++. ...|..+|.+...
T Consensus       287 -----------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~-~g~l~~~d~~tG~  339 (376)
T 3q7m_A          287 -----------------DRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDS-EGYLHWINVEDGR  339 (376)
T ss_dssp             -----------------CCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECT-TSEEEEEETTTCC
T ss_pred             -----------------CeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeC-CCeEEEEECCCCc
Confidence                             46899996 6887766653221122223446899999963 4578888876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.66  E-value=1.4e-06  Score=83.23  Aligned_cols=243  Identities=8%  Similarity=0.006  Sum_probs=134.2

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-CCce--eeeEECCCCCCCCceEEEEEe------------
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-GGRP--LGIAFANSDPDADRITMIVAD------------  151 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p--~gl~~d~~G~~~~~~~L~v~~------------  151 (393)
                      +++++|||+.|++...++.|++++.++++    ....... .+..  .....+++|      +++++.            
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~dg------~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLE----ENVVYQVPAEWVGYGTWVANSDC------TKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECCTTEEEEEEEEECTTS------SEEEEEEEEGGGCCCCCS
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCc----ceeeeechhhcccccceeECCCC------CeeccccccCcccccccc
Confidence            56899999989888888899999998765    3333221 1211  123347788      655531            


Q ss_pred             -----------CCCceEEEeCCc--eEEEeeccCCccccccccEEEcC-CCc-EEEEeCCCccchhhheehhcccCCCcE
Q 016199          152 -----------AYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGM-IYFTDASNKYYLREYILDIFEGKPNGR  216 (393)
Q Consensus       152 -----------~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~  216 (393)
                                 ....|+.+|.++  .+.+... .    ..+.++.++| ||. |.++.....            ......
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~~~~~~sp~dg~~l~~~~~~~~------------~~~~~~  217 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-N----QWLGHPIYRPYDDSTVAFCHEGPH------------DLVDAR  217 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-S----SCEEEEEEETTEEEEEEEEECSCT------------TTSSCS
T ss_pred             cchhhhhhccCCcceEEEEECCCCceEEeecC-C----ccccccEECCCCCCEEEEEEecCC------------CCCcce
Confidence                       124578888654  3333321 1    1245788999 884 545431100            012347


Q ss_pred             EEEEeCCCCeEEEEecCc--cCCCcEEEcCCCCEE-EEEeCCCC---eEEEEEecCCCCcceeeeeccCCC------CCC
Q 016199          217 LLSFDPVTKETKVLVSDL--YFANGVVLSPDQTHL-VYCETSMR---RCRKFYIKGKNAGRVEKFIETLPG------LPD  284 (393)
Q Consensus       217 l~~~d~~t~~~~~~~~~l--~~~ngi~~s~dg~~l-~v~~~~~~---ri~~~~~~g~~~~~~~~~~~~l~g------~P~  284 (393)
                      |+.+|.++++.+.+....  ......+++|||+.| |++.....   .|+++++++.   +.+.+. ..++      .++
T Consensus       218 l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g---~~~~l~-~~~~~~~~~~~~~  293 (388)
T 3pe7_A          218 MWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL---ENRQLT-SMPACSHLMSNYD  293 (388)
T ss_dssp             EEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC---CEEEEE-EECCEEEEEECTT
T ss_pred             EEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC---ceEEEE-cCCCceeeeecCC
Confidence            999998877766654432  124457899999877 44543332   3999998643   222222 1222      155


Q ss_pred             eEEECCCCCEEE-EEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCC-------
Q 016199          285 NIRYDGEGHYLI-ALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEM-------  356 (393)
Q Consensus       285 ~i~~d~~G~lwv-a~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~-------  356 (393)
                      ++++++||+..+ ......                          .........|+.+|.++..+..+.....       
T Consensus       294 ~~~~spdg~~l~~~~~~~~--------------------------~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  347 (388)
T 3pe7_A          294 GSLMVGDGSDAPVDVQDDS--------------------------GYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEG  347 (388)
T ss_dssp             SSEEEEEECCC--------------------------------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTT
T ss_pred             CCeEccCCCcceeEeeecc--------------------------ccccCCCCEEEEEeccCCceEEeccccCccccccc
Confidence            566777776332 221100                          0000112458899987766655543221       


Q ss_pred             ----CccE-EEEEeCCEEEEEecC--CCeEEEEeCCC
Q 016199          357 ----SLIS-SAIKIGDHLYCGSVH--HRGILHLDVNQ  386 (393)
Q Consensus       357 ----~~~~-~~~~~~g~Lyigs~~--~~~i~~~~~~~  386 (393)
                          .... ...+++.+|++++..  ...|.++++.+
T Consensus       348 ~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          348 DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             ccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence                1111 223455688888754  35677787754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.66  E-value=4.9e-06  Score=87.46  Aligned_cols=186  Identities=12%  Similarity=0.033  Sum_probs=116.7

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....+++|+++|+.|.+++.+|.|..|+.+++.   ....+....+....+++.++|+     .|.++...+.|..++.+
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i~vw~~~  127 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPTKP-----YVLSGSDDLTVKLWNWE  127 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECSSSS-----EEEEEETTSEEEEEEGG
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEEEEecCCCCEEEEEEeCCCC-----EEEEEcCCCEEEEEECC
Confidence            345679999999999999999999999987654   1334443456688999999982     45666555557777754


Q ss_pred             c-eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEecC-ccCCC
Q 016199          163 S-TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSD-LYFAN  238 (393)
Q Consensus       163 g-~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~~~-l~~~n  238 (393)
                      + ..... ...+.. ..+..+++.+ +|.++++.                 ...+.|..||..+++.. .+... ....+
T Consensus       128 ~~~~~~~-~~~~~~-~~v~~~~~~p~~~~~l~~~-----------------~~dg~v~vwd~~~~~~~~~~~~~~~~~v~  188 (814)
T 3mkq_A          128 NNWALEQ-TFEGHE-HFVMCVAFNPKDPSTFASG-----------------CLDRTVKVWSLGQSTPNFTLTTGQERGVN  188 (814)
T ss_dssp             GTSEEEE-EEECCS-SCEEEEEEETTEEEEEEEE-----------------ETTSEEEEEETTCSSCSEEEECCCTTCCC
T ss_pred             CCceEEE-EEcCCC-CcEEEEEEEcCCCCEEEEE-----------------eCCCeEEEEECCCCcceeEEecCCCCCEE
Confidence            3 11111 111111 2356788988 77655552                 34567889987655432 22222 25568


Q ss_pred             cEEEcC--CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          239 GVVLSP--DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       239 gi~~s~--dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+++++  ++..+ ++....+.|..|++...+  ....+. ...+....++++++|.+.++..
T Consensus       189 ~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          189 YVDYYPLPDKPYM-ITASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             EEEECCSTTCCEE-EEECTTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEEECCCCCEE-EEEeCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence            899998  88655 555567899999975321  122222 2223345678899998666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.66  E-value=6.9e-06  Score=78.27  Aligned_cols=185  Identities=10%  Similarity=0.136  Sum_probs=106.6

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      +-.+++|.++++ +++++.+|.|..|+..++.... ...+.  ........+++.++|     +.|..+...+.|..+|.
T Consensus        96 ~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~V~~v~~spdg-----~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           96 GVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL-VNKFAKYEHDDIVKTLSVFSDG-----TQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             CEEEEEEETTTE-EEEEETTSCEEEC--------C-CCCEEECCCSSCEEEEEECSSS-----SEEEEEETTSCEEEEET
T ss_pred             CEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE-EEeeccCCCCCCEEEEEECCCC-----CEEEEEeCCCeEEEEEC
Confidence            456789999985 7788889999988876543110 11111  123457899999998     13455544555777787


Q ss_pred             CceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec---CccCC
Q 016199          162 NSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS---DLYFA  237 (393)
Q Consensus       162 ~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~---~l~~~  237 (393)
                      +..+.+. ...+. ...++.+++.+++ .++++.                 ...+.|..||..+++......   ....+
T Consensus       169 ~~~~~~~-~~~~h-~~~v~~v~~s~~~~~~~~s~-----------------~~dg~v~~wd~~~~~~~~~~~~~~~~~~v  229 (357)
T 4g56_B          169 SQKAVLK-SYNAH-SSEVNCVAACPGKDTIFLSC-----------------GEDGRILLWDTRKPKPATRIDFCASDTIP  229 (357)
T ss_dssp             TTTEEEE-EECCC-SSCEEEEEECTTCSSCEEEE-----------------ETTSCEEECCTTSSSCBCBCCCTTCCSCE
T ss_pred             CCCcEEE-EEcCC-CCCEEEEEEccCCCceeeee-----------------ccCCceEEEECCCCceeeeeeeccccccc
Confidence            5411111 11111 1235688888877 455542                 234678888887665432221   12345


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                      ..++++|++..++++....+.|..|++...+  ....+. ...+....++++++|.-+++
T Consensus       230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~-~~~~~v~~l~~sp~~~~~la  286 (357)
T 4g56_B          230 TSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSA-VHSQNITGLAYSYHSSPFLA  286 (357)
T ss_dssp             EEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEEC-CCSSCEEEEEECSSSSCCEE
T ss_pred             cchhhhhcccceEEEeecccceeEEECCCCc--EeEEEe-ccceeEEEEEEcCCCCCEEE
Confidence            7789999977777777778899999985332  122221 22222356788888754443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.66  E-value=4.8e-05  Score=73.06  Aligned_cols=162  Identities=9%  Similarity=0.110  Sum_probs=105.5

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      +......+++++++++.|++++.++.|..|+...+.   ....+.........+++.++|     +.|+.+...+.|..+
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~-----~~l~s~~~d~~v~iw  208 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS---NPRTLIGHRATVTDIAIIDRG-----RNVLSASLDGTIRLW  208 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---CCEEEECCSSCEEEEEEETTT-----TEEEEEETTSCEEEE
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc---CceEEcCCCCcEEEEEEcCCC-----CEEEEEcCCCcEEEe
Confidence            333456679999999989999999999999987654   134444445667899999988     145555545557778


Q ss_pred             eCCc---eEEEeeccC--Cc-----------------cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEE
Q 016199          160 SGNS---TVLLTDEAE--GQ-----------------KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRL  217 (393)
Q Consensus       160 d~~g---~~~l~~~~~--g~-----------------~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l  217 (393)
                      |...   ...+.....  ..                 ....+..++++++|.+.++-                 ...|.|
T Consensus       209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----------------~~dg~i  271 (420)
T 3vl1_A          209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG-----------------HVSGVI  271 (420)
T ss_dssp             ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE-----------------ETTSCE
T ss_pred             ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE-----------------cCCCeE
Confidence            8654   222211000  00                 01224456678888655542                 345679


Q ss_pred             EEEeCCCCeEEEEe-c-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          218 LSFDPVTKETKVLV-S-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       218 ~~~d~~t~~~~~~~-~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ..||..+++..... . .......++++++++.++++....+.|..|++..
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          272 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence            99998776544332 2 2344678999999984556666789999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.66  E-value=6.6e-05  Score=71.87  Aligned_cols=261  Identities=13%  Similarity=0.116  Sum_probs=135.4

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLL  157 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~  157 (393)
                      .|....-.+++|+|+|+.|.+++.|+.|..|+..++.   ....+.........+++.++|      +++++.. .+.+.
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g------~~las~~~d~~v~  133 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNG------QSVACGGLDSACS  133 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTS------SEEEECCSSSCCE
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCC------CEEEEeeCCCcEE
Confidence            4443445679999999989999999999999987653   123333333456778888888      5444433 33344


Q ss_pred             EEeCCc-------e---EEEeeccCCcc--ccc-c---ccE-EEcCCCcEEEEeCCCccchh-----------hhe----
Q 016199          158 KISGNS-------T---VLLTDEAEGQK--FKL-T---DGV-DVADDGMIYFTDASNKYYLR-----------EYI----  205 (393)
Q Consensus       158 ~id~~g-------~---~~l~~~~~g~~--~~~-~---~~l-~~d~dG~l~~td~~~~~~~~-----------~~~----  205 (393)
                      .++...       .   ..+... .+..  ..+ +   .-+ .-..||.+.+=|........           ...    
T Consensus       134 iw~~~~~~~~~~~~~~~~~~~gh-~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          134 IFNLSSQADRDGNMPVSRVLTGH-KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             EEECCCCSSCCCSSTTCCBCCCC-SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             EEECCCCccccCCccceeeccCC-CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            444321       0   001000 0000  000 0   012 22234544443332111000           000    


Q ss_pred             ------ehhcccCCCcEEEEEeCCC--CeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec
Q 016199          206 ------LDIFEGKPNGRLLSFDPVT--KETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE  277 (393)
Q Consensus       206 ------~~~~e~~~~g~l~~~d~~t--~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~  277 (393)
                            ..+..+...+.|..||...  .....+.......+.++++||++. +++.+..+.|..|++...+  ....+..
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~--~~~~~~~  289 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGH--QLQVYNR  289 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTE--EEEEECC
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCc--EEEEecc
Confidence                  0011223456678888652  223334334456789999999965 5667778899999985321  1122211


Q ss_pred             c------CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEE
Q 016199          278 T------LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAH  350 (393)
Q Consensus       278 ~------l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~  350 (393)
                      .      .......++++++|++.++....                                  +.|..+|. .++.+..
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----------------------------------g~i~vwd~~~~~~~~~  335 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSISGRLLFAGYSN----------------------------------GDCYVWDTLLAEMVLN  335 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSSSSEEEEECTT----------------------------------SCEEEEETTTCCEEEE
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECC----------------------------------CCEEEEECCCCceEEE
Confidence            1      01124568899999987765533                                  45777775 4666666


Q ss_pred             eeCC---CCCccEE-EEEeC-CEEEEEecCCCeEEEEeCCCC
Q 016199          351 YYDP---EMSLISS-AIKIG-DHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       351 ~~d~---~~~~~~~-~~~~~-g~Lyigs~~~~~i~~~~~~~~  387 (393)
                      +...   -...++. ....+ ..|..|+ ....|...++...
T Consensus       336 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~iW~~~~~  376 (380)
T 3iz6_a          336 LGTLQNSHEGRISCLGLSSDGSALCTGS-WDKNLKIWAFSGH  376 (380)
T ss_dssp             ECCSCSSCCCCCCEEEECSSSSEEEEEC-TTSCEEEEECCSS
T ss_pred             EecccCCCCCceEEEEECCCCCEEEEee-CCCCEEEEecCCC
Confidence            5321   1222322 23334 4555554 4556666676544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.65  E-value=2.6e-05  Score=81.02  Aligned_cols=191  Identities=10%  Similarity=0.107  Sum_probs=121.7

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+....-.+++++++|+.|.+++.|+.|..|+..++.   ....+........++++.++|     +.|..+...+.|..
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~---~~~~~~~h~~~v~~~~~s~~~-----~~l~s~s~D~~i~i  498 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV---STRRFVGHTKDVLSVAFSLDN-----RQIVSASRDRTIKL  498 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTS-----SCEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---ceeEEeCCCCCEEEEEEeCCC-----CEEEEEeCCCEEEE
Confidence            4444556679999999999999999999999987653   133444445668899999998     13555544555777


Q ss_pred             EeCCc-e-EEEeeccCCccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cC
Q 016199          159 ISGNS-T-VLLTDEAEGQKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SD  233 (393)
Q Consensus       159 id~~g-~-~~l~~~~~g~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~  233 (393)
                      +|..+ . ..+.....+. ...+..+++.+++  .+.++-                 ...+.|..||..+++..... ..
T Consensus       499 wd~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~-----------------s~d~~v~vwd~~~~~~~~~~~~h  560 (694)
T 3dm0_A          499 WNTLGECKYTISEGGEGH-RDWVSCVRFSPNTLQPTIVSA-----------------SWDKTVKVWNLSNCKLRSTLAGH  560 (694)
T ss_dssp             ECTTSCEEEEECSSTTSC-SSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCC
T ss_pred             EECCCCcceeeccCCCCC-CCcEEEEEEeCCCCcceEEEE-----------------eCCCeEEEEECCCCcEEEEEcCC
Confidence            78655 2 2221111221 2346678888876  344442                 23467888998776655433 33


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      ....+.+++++|++.+ ++.+..+.|..|++...   +..... ........++++++|.+.++...
T Consensus       561 ~~~v~~v~~spdg~~l-~sg~~Dg~i~iwd~~~~---~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~  622 (694)
T 3dm0_A          561 TGYVSTVAVSPDGSLC-ASGGKDGVVLLWDLAEG---KKLYSL-EANSVIHALCFSPNRYWLCAATE  622 (694)
T ss_dssp             SSCEEEEEECTTSSEE-EEEETTSBCEEEETTTT---EEEECC-BCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCC---ceEEEe-cCCCcEEEEEEcCCCcEEEEEcC
Confidence            4556889999999754 55666889999998532   111111 11223456888999887766543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.65  E-value=1.8e-06  Score=87.79  Aligned_cols=180  Identities=13%  Similarity=-0.012  Sum_probs=108.2

Q ss_pred             CCceEEEecCCCEEEEEec---CC--eEEEEEc--CCCCCcceeeeeecCCCce--eeeEECCCCCCCCceEEEEEeCCC
Q 016199           84 GPEDLLYDAHSKLIYTGCE---DG--WIKRVTL--NDSPADSLVHNWINTGGRP--LGIAFANSDPDADRITMIVADAYK  154 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~---~g--~I~~~~~--~~~~~~~~~~~~~~~~~~p--~gl~~d~~G~~~~~~~L~v~~~~~  154 (393)
                      ...+++++|| +.+|++..   +.  +|+.++.  ++..    . .+.. ....  ..+..|.++      .+++....+
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~----~-~l~~-~~~~~~~~~s~dg~~------~~~~s~~~~  132 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE----Q-RLEA-VKPMRILSGVDTGEA------VVFTGATED  132 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC----E-ECTT-SCSBEEEEEEECSSC------EEEEEECSS
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc----c-cccC-CCCceeeeeCCCCCe------EEEEecCCC
Confidence            3456788888 77887765   22  6777877  4432    2 2211 1222  344445454      566666666


Q ss_pred             ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          155 GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       155 gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      ++..+|.++  .+.+.... +      .+++++|||+.++..+.             .......|+.+|..+++.+.+..
T Consensus       133 ~~~l~d~~~g~~~~l~~~~-~------~~~~~spDG~~la~~~~-------------~~~~~~~i~~~d~~~g~~~~l~~  192 (582)
T 3o4h_A          133 RVALYALDGGGLRELARLP-G------FGFVSDIRGDLIAGLGF-------------FGGGRVSLFTSNLSSGGLRVFDS  192 (582)
T ss_dssp             CEEEEEEETTEEEEEEEES-S------CEEEEEEETTEEEEEEE-------------EETTEEEEEEEETTTCCCEEECC
T ss_pred             CceEEEccCCcEEEeecCC-C------ceEEECCCCCEEEEEEE-------------cCCCCeEEEEEcCCCCCceEeec
Confidence            676777654  33333211 1      57889999975553211             01122569999998888887765


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCeEE--------ECCCCCEEEEEec
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSM-RRCRKFYIKGKNAGRVEKFIETLPGLPDNIR--------YDGEGHYLIALAT  300 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~--------~d~~G~lwva~~~  300 (393)
                      .....+.++++|||+.|+.++... .+|+++++++.   +.. ........+.+++        +++||.++++...
T Consensus       193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR  265 (582)
T ss_dssp             SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence            555568899999999998665432 28999998643   222 2222222233455        8999987776653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.65  E-value=3.9e-05  Score=72.24  Aligned_cols=191  Identities=11%  Similarity=0.059  Sum_probs=116.6

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+....-.++++++++..+.+++.|+.|..|+..++.   ....+.........+++.++|     +.|..+...+.|..
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~~-----~~l~s~~~d~~i~~  144 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT---TYKRFVGHQSEVYSVAFSPDN-----RQILSAGAEREIKL  144 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC---EEEEEECCCSCEEEEEECSST-----TEEEEEETTSCEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---EEEEEcCCCCcEEEEEECCCC-----CEEEEEcCCCEEEE
Confidence            3433445678999999988899999999999987654   134444445667899999998     24555555555777


Q ss_pred             EeCCc-eEEEeeccCCccccccccEEEcCCC----------cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDG----------MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG----------~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      +|..+ .........+. ...+..+.+.+++          .++++-                 ...+.|..||......
T Consensus       145 wd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~  206 (343)
T 2xzm_R          145 WNILGECKFSSAEKENH-SDWVSCVRYSPIMKSANKVQPFAPYFASV-----------------GWDGRLKVWNTNFQIR  206 (343)
T ss_dssp             EESSSCEEEECCTTTSC-SSCEEEEEECCCCCSCSCCCSSCCEEEEE-----------------ETTSEEEEEETTTEEE
T ss_pred             EeccCCceeeeecccCC-CceeeeeeeccccccccccCCCCCEEEEE-----------------cCCCEEEEEcCCCcee
Confidence            78665 21111111111 1235567777765          333332                 3356788888653333


Q ss_pred             EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          228 KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       228 ~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ..+.......+.++++|||+.| ++....+.|..|++..... ....+.  .......++++++|.+..+..
T Consensus       207 ~~~~~h~~~v~~~~~s~~g~~l-~sgs~dg~v~iwd~~~~~~-~~~~~~--~~~~v~~v~~sp~~~~la~~~  274 (343)
T 2xzm_R          207 YTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDILNLTY-PQREFD--AGSTINQIAFNPKLQWVAVGT  274 (343)
T ss_dssp             EEEECCSSCEEEEEECTTSSEE-EEEETTCEEEEEESSCCSS-CSEEEE--CSSCEEEEEECSSSCEEEEEE
T ss_pred             EEEcCccccceEEEECCCCCEE-EEEcCCCeEEEEECCCCcc-cceeec--CCCcEEEEEECCCCCEEEEEC
Confidence            3343334556889999999765 5556688999999842211 111221  112245688999988655443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.64  E-value=1.4e-05  Score=75.19  Aligned_cols=191  Identities=11%  Similarity=0.124  Sum_probs=113.1

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCC--CCCCCceEEEEEeCCCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANS--DPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~--G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      ..-.+++++++++.|.+++.+|.|..|+.+..... ....+.........+++.++  +     +.|+.+...+.|..+|
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~-----~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFG-----TILASCSYDGKVLIWK   85 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGC-----SEEEEEETTSCEEEEE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-eeeEecCCCCcEEEEEeCCCCCC-----CEEEEeccCCEEEEEE
Confidence            44567899999998889989999999988643210 12233233456788998765  6     1456665555577777


Q ss_pred             CCc-e-EEEeeccCCccccccccEEEcCC--CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe---EEEEecC
Q 016199          161 GNS-T-VLLTDEAEGQKFKLTDGVDVADD--GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE---TKVLVSD  233 (393)
Q Consensus       161 ~~g-~-~~l~~~~~g~~~~~~~~l~~d~d--G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~---~~~~~~~  233 (393)
                      .+. . ..+. ...+. ...+..+++.++  |.++++-                 ...+.|..||..++.   ...+...
T Consensus        86 ~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~l~~~-----------------~~d~~i~v~d~~~~~~~~~~~~~~~  146 (379)
T 3jrp_A           86 EENGRWSQIA-VHAVH-SASVNSVQWAPHEYGPLLLVA-----------------SSDGKVSVVEFKENGTTSPIIIDAH  146 (379)
T ss_dssp             EETTEEEEEE-EECCC-SSCEEEEEECCGGGCSEEEEE-----------------ETTSEEEEEECCTTSCCCEEEEECC
T ss_pred             cCCCceeEee-eecCC-CcceEEEEeCCCCCCCEEEEe-----------------cCCCcEEEEecCCCCceeeEEecCC
Confidence            543 2 1221 11111 123668899998  7655553                 335678888876652   2223333


Q ss_pred             ccCCCcEEEcC-------------CCCEEEEEeCCCCeEEEEEecCCCCc-ceeeeeccCCCCCCeEEECCC---CCEEE
Q 016199          234 LYFANGVVLSP-------------DQTHLVYCETSMRRCRKFYIKGKNAG-RVEKFIETLPGLPDNIRYDGE---GHYLI  296 (393)
Q Consensus       234 l~~~ngi~~s~-------------dg~~l~v~~~~~~ri~~~~~~g~~~~-~~~~~~~~l~g~P~~i~~d~~---G~lwv  296 (393)
                      ......++++|             |++.+ ++....+.|..|++...... ..........+....++++++   |++.+
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~  225 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  225 (379)
T ss_dssp             TTCEEEEEECCCC----------CTTCEE-EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             CCceEEEEEcCccccccccccCCCCCCEE-EEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence            44567888888             57555 55556788999998643211 111111122233456888998   67666


Q ss_pred             EEe
Q 016199          297 ALA  299 (393)
Q Consensus       297 a~~  299 (393)
                      +..
T Consensus       226 s~~  228 (379)
T 3jrp_A          226 SVS  228 (379)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.64  E-value=6.8e-06  Score=79.13  Aligned_cols=194  Identities=13%  Similarity=0.015  Sum_probs=119.0

Q ss_pred             CCCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCc----ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           83 KGPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPAD----SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        83 ~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~----~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      ....++++++ +++.|.+++.+|.|..|+...+...    .....+.........+++.++|.    +.|+.+...+.|.
T Consensus        82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~----~~l~s~~~dg~i~  157 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ----NVLLSAGCDNVIL  157 (402)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT----TEEEEEETTSCEE
T ss_pred             CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC----CEEEEEcCCCEEE
Confidence            4456799999 8888999999999999998765210    01233333446688999999861    1455665555678


Q ss_pred             EEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cC--
Q 016199          158 KISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SD--  233 (393)
Q Consensus       158 ~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~--  233 (393)
                      .+|... .....-...+. ...+..+++.++|.++++.                 ...+.|..||..+++..... ..  
T Consensus       158 iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~  219 (402)
T 2aq5_A          158 VWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDGALICTS-----------------CRDKRVRVIEPRKGTVVAEKDRPHE  219 (402)
T ss_dssp             EEETTTTEEEEEECTTTC-CSCEEEEEECTTSSCEEEE-----------------ETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             EEECCCCCccEEEecCCC-CCceEEEEECCCCCEEEEE-----------------ecCCcEEEEeCCCCceeeeeccCCC
Confidence            888654 21111100111 1346688999999655552                 33568999999877654433 22  


Q ss_pred             ccCCCcEEEcCCCCEEEEEe--CCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          234 LYFANGVVLSPDQTHLVYCE--TSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~--~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ...+..+++++|++.++++.  ...+.|..|++...+.. .....-........++++++|++.+...
T Consensus       220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~g  286 (402)
T 2aq5_A          220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-LSLQELDTSSGVLLPFFDPDTNIVYLCG  286 (402)
T ss_dssp             SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-SEEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred             CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-ceEEeccCCCceeEEEEcCCCCEEEEEE
Confidence            22367899999986544432  56788999998643211 1111101122355688899998665433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.62  E-value=1.6e-05  Score=80.32  Aligned_cols=235  Identities=10%  Similarity=0.078  Sum_probs=143.7

Q ss_pred             CceEEEec--CCCEEEEEecCCeEEEEEcCCC------CCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---
Q 016199           85 PEDLLYDA--HSKLIYTGCEDGWIKRVTLNDS------PADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---  153 (393)
Q Consensus        85 Pe~ia~d~--~g~~L~~~~~~g~I~~~~~~~~------~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---  153 (393)
                      ..++++++  +++.|.+++.+|.|..|+...+      . ......+.........+++.++|     +.|.++...   
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~~~~~  140 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE-VNVKSEFQVLAGPISDISWDFEG-----RRLCVVGEGRDN  140 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE-EEEEEEEECCSSCEEEEEECTTS-----SEEEEEECCSSC
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc-ccccchhhcccccEEEEEEeCCC-----CEEEEeccCCCC
Confidence            57899999  9998999999999999988533      1 01133333345668899999999     245555433   


Q ss_pred             -CceEEEeCCc-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          154 -KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       154 -~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                       ..|..++... ...+    .+. ...+..+++.++|. ++++.                 ...+.|..||..+++....
T Consensus       141 ~~~v~~~d~~~~~~~~----~~~-~~~v~~~~~~~~~~~~l~~~-----------------~~d~~v~vwd~~~~~~~~~  198 (615)
T 1pgu_A          141 FGVFISWDSGNSLGEV----SGH-SQRINACHLKQSRPMRSMTV-----------------GDDGSVVFYQGPPFKFSAS  198 (615)
T ss_dssp             SEEEEETTTCCEEEEC----CSC-SSCEEEEEECSSSSCEEEEE-----------------ETTTEEEEEETTTBEEEEE
T ss_pred             ccEEEEEECCCcceee----ecC-CccEEEEEECCCCCcEEEEE-----------------eCCCcEEEEeCCCcceeee
Confidence             2355566332 2222    121 12466889999985 55542                 3456799999877765443


Q ss_pred             ecC-cc---CCCcEEEcCC-CCEEEEEeCCCCeEEEEEecCCCCcceeeeec---cCCCCCCeEEECCCCCEEEEEecCc
Q 016199          231 VSD-LY---FANGVVLSPD-QTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE---TLPGLPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       231 ~~~-l~---~~ngi~~s~d-g~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~---~l~g~P~~i~~d~~G~lwva~~~~r  302 (393)
                      ... ..   ....+++++| ++.++. ....+.|..|++...+  ....+..   ...+....++++ +|++.++.... 
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-  273 (615)
T 1pgu_A          199 DRTHHKQGSFVRDVEFSPDSGEFVIT-VGSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD-  273 (615)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEE-EETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT-
T ss_pred             ecccCCCCceEEEEEECCCCCCEEEE-EeCCCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCCEEEEEcCC-
Confidence            332 33   4678999999 876654 4457899999975321  1222211   222234567888 88877665533 


Q ss_pred             chhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC----CCccEEEEEeCCEEEEEecCCC
Q 016199          303 STYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE----MSLISSAIKIGDHLYCGSVHHR  377 (393)
Q Consensus       303 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~----~~~~~~~~~~~g~Lyigs~~~~  377 (393)
                                                       +.|..+|. +++.+..+..+.    .........+++.|..++ ...
T Consensus       274 ---------------------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g  319 (615)
T 1pgu_A          274 ---------------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS-LDG  319 (615)
T ss_dssp             ---------------------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE-TTS
T ss_pred             ---------------------------------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE-CCC
Confidence                                             45777775 477777776542    222333344667777776 455


Q ss_pred             eEEEEeCCC
Q 016199          378 GILHLDVNQ  386 (393)
Q Consensus       378 ~i~~~~~~~  386 (393)
                      .|..+++..
T Consensus       320 ~i~~~d~~~  328 (615)
T 1pgu_A          320 TLNFYELGH  328 (615)
T ss_dssp             CEEEEETTE
T ss_pred             CEEEEECCC
Confidence            677777654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.61  E-value=5.3e-06  Score=78.20  Aligned_cols=187  Identities=10%  Similarity=-0.030  Sum_probs=114.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee---ecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW---INTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~---~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      ....+++++++++.|++++.+|.|..|+.+.+.    ....   .........+++.++|     +.|+++...+.+..+
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----WKPTLVILRINRAARCVRWAPNE-----KKFAVGSGSRVISIC  123 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTE----EEEEEECCCCSSCEEEEEECTTS-----SEEEEEETTSSEEEE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe----eeeeEEeecCCCceeEEEECCCC-----CEEEEEeCCCEEEEE
Confidence            455679999999989999999999999986653    2211   2234567899999988     245566545556665


Q ss_pred             eCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-------------
Q 016199          160 SGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-------------  223 (393)
Q Consensus       160 d~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-------------  223 (393)
                      +.+.   .........+. ...+..+++.++|.++++.                 ...+.+..||..             
T Consensus       124 d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-----------------~~dg~i~~~d~~~~~~~~~~~~~~~  185 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAG-----------------SCDFKCRIFSAYIKEVEERPAPTPW  185 (372)
T ss_dssp             EEETTTTEEEEEEECTTC-CSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             EecCCCcceeeeeeeccc-CCCeeEEEEcCCCCEEEEE-----------------cCCCCEEEEEccccccccccccccc
Confidence            5433   11111111111 2346788999999766653                 234567778732             


Q ss_pred             -----CCeE-EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          224 -----TKET-KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       224 -----t~~~-~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                           +++. ..+.......+.++++++++.++.+ ...+.|..|++...+  ....+. ........++++++|++.++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~  261 (372)
T 1k8k_C          186 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAA  261 (372)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEE
T ss_pred             ccccchhhheEecCCCCCeEEEEEECCCCCEEEEE-eCCCEEEEEECCCCc--eeEEEc-cCCCCeEEEEEecCCCEEEE
Confidence                 3333 2233334456889999999766554 467899999985322  122222 22223456788888887666


Q ss_pred             Eec
Q 016199          298 LAT  300 (393)
Q Consensus       298 ~~~  300 (393)
                      ...
T Consensus       262 ~~d  264 (372)
T 1k8k_C          262 GHD  264 (372)
T ss_dssp             ETT
T ss_pred             EeC
Confidence            543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.61  E-value=1.6e-05  Score=77.96  Aligned_cols=142  Identities=13%  Similarity=0.100  Sum_probs=83.7

Q ss_pred             ceeeeEECCCCCCCCceEE-EEEeCC-CceEEEeCC---c--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccch
Q 016199          129 RPLGIAFANSDPDADRITM-IVADAY-KGLLKISGN---S--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYL  201 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L-~v~~~~-~gl~~id~~---g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~  201 (393)
                      ...++++.++|      +. +++... +.|..++..   +  ...+.....   ...+..++++++|..+++-       
T Consensus       104 ~v~~~~~s~d~------~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~-------  167 (450)
T 2vdu_B          104 YIRNLRLTSDE------SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF---SKRPNAISIAEDDTTVIIA-------  167 (450)
T ss_dssp             CEEEEEECTTS------SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC---SSCEEEEEECTTSSEEEEE-------
T ss_pred             ceEEEEEcCCC------CEEEEEECCCCeEEEEECcCCCCceeeeeecccC---CCCceEEEEcCCCCEEEEE-------
Confidence            36789999999      54 344333 445566644   3  333321111   1235689999999654442       


Q ss_pred             hhheehhcccCCCcEEEEEeCCCCeEE-----EEecCccCCCcEEEcCC---CCEEEEEeCCCCeEEEEEecCCCCccee
Q 016199          202 REYILDIFEGKPNGRLLSFDPVTKETK-----VLVSDLYFANGVVLSPD---QTHLVYCETSMRRCRKFYIKGKNAGRVE  273 (393)
Q Consensus       202 ~~~~~~~~e~~~~g~l~~~d~~t~~~~-----~~~~~l~~~ngi~~s~d---g~~l~v~~~~~~ri~~~~~~g~~~~~~~  273 (393)
                                ...|.++.++..+++..     .+.......+.++++||   ++.+ ++....+.|..|++...+  ...
T Consensus       168 ----------~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l-~s~~~d~~i~vwd~~~~~--~~~  234 (450)
T 2vdu_B          168 ----------DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI-ITSDRDEHIKISHYPQCF--IVD  234 (450)
T ss_dssp             ----------ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE-EEEETTSCEEEEEESCTT--CEE
T ss_pred             ----------eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEE-EEEcCCCcEEEEECCCCc--eee
Confidence                      23567888887655432     12222345678999999   7544 555567899999985321  122


Q ss_pred             eeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          274 KFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       274 ~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      .+.....+....++++ +|++.++...
T Consensus       235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~  260 (450)
T 2vdu_B          235 KWLFGHKHFVSSICCG-KDYLLLSAGG  260 (450)
T ss_dssp             EECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred             eeecCCCCceEEEEEC-CCCEEEEEeC
Confidence            2232333445678899 8987766553

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.61  E-value=2.7e-05  Score=76.34  Aligned_cols=155  Identities=14%  Similarity=0.101  Sum_probs=99.0

Q ss_pred             CCceEEEecCCCEE-EEEecCCeEEEEEcC--CCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           84 GPEDLLYDAHSKLI-YTGCEDGWIKRVTLN--DSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L-~~~~~~g~I~~~~~~--~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      ...+++++++|+.| ++++.+|.|..|+..  ++.   ....+.  .....+.+++++++|     +.|++++..+.++.
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~-----~~l~~~~~~g~v~~  175 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN---VLKLRKRFCFSKRPNAISIAEDD-----TTVIIADKFGDVYS  175 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS---CEEEEEEEECSSCEEEEEECTTS-----SEEEEEETTSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc---eeeeeecccCCCCceEEEEcCCC-----CEEEEEeCCCcEEE
Confidence            35679999999986 667789999999987  443   133332  234568899999998     25666665555777


Q ss_pred             EeCCc--eEE-EeeccCCccccccccEEEcCC---CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEe
Q 016199          159 ISGNS--TVL-LTDEAEGQKFKLTDGVDVADD---GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLV  231 (393)
Q Consensus       159 id~~g--~~~-l~~~~~g~~~~~~~~l~~d~d---G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~  231 (393)
                      ++...  ... ......+. ...+..+++.++   |.++++.                 ...+.|..||..+++.. .+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~-----------------~~d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGHQFIITS-----------------DRDEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             EETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSCEEEEEE-----------------ETTSCEEEEEESCTTCEEEEC
T ss_pred             EecCCcccccccceeeecc-cCceEEEEEcCCCCCCcEEEEE-----------------cCCCcEEEEECCCCceeeeee
Confidence            77543  110 00011111 134668899998   8655553                 22456788887666533 323


Q ss_pred             -cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          232 -SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       232 -~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                       ........++++ |++.++. ....+.|..|++..
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s-~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLS-AGGDDKIFAWDWKT  271 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEE-EESSSEEEEEETTT
T ss_pred             cCCCCceEEEEEC-CCCEEEE-EeCCCeEEEEECCC
Confidence             233456889999 9876654 45678999999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.61  E-value=1.7e-05  Score=82.34  Aligned_cols=185  Identities=9%  Similarity=0.087  Sum_probs=112.7

Q ss_pred             CceEEEecCCCEEEEEe---------------------------------cCCeEEEEEcCCCCCcceeeeeec---CCC
Q 016199           85 PEDLLYDAHSKLIYTGC---------------------------------EDGWIKRVTLNDSPADSLVHNWIN---TGG  128 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~---------------------------------~~g~I~~~~~~~~~~~~~~~~~~~---~~~  128 (393)
                      +.+++|+|||+.|+++.                                 .+..|+.++.+++.    ......   ...
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~----~~~~~~~~~~~~  258 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK----TVYLQTGEPKEK  258 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE----EEECCCCSCTTC
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc----eEeeccCCCCce
Confidence            47899999999887765                                 23468888887654    333221   123


Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCCC-----ceEEEeCCc---eEEEeeccCCccccccccEEEcC--CCcEEEEeCCCc
Q 016199          129 RPLGIAFANSDPDADRITMIVADAYK-----GLLKISGNS---TVLLTDEAEGQKFKLTDGVDVAD--DGMIYFTDASNK  198 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~~-----gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~--dG~l~~td~~~~  198 (393)
                      .+..+++.++|     +.|+++....     .|+.+|.++   .+.+............+.+.+.+  ||.++++..   
T Consensus       259 ~~~~~~~spdg-----~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~---  330 (706)
T 2z3z_A          259 FLTNLSWSPDE-----NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR---  330 (706)
T ss_dssp             EEEEEEECTTS-----SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC---
T ss_pred             eEeeEEEECCC-----CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc---
Confidence            46789999999     2466654333     477788654   22222111111111235788999  997554421   


Q ss_pred             cchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc-EEEcCCCCEEEEEeCCCC----eEEEEEecCCCCccee
Q 016199          199 YYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG-VVLSPDQTHLVYCETSMR----RCRKFYIKGKNAGRVE  273 (393)
Q Consensus       199 ~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng-i~~s~dg~~l~v~~~~~~----ri~~~~~~g~~~~~~~  273 (393)
                                  ..+...|+.++..++..+.+..+...... +++++||+.+|++....+    +|+++++++.   ..+
T Consensus       331 ------------~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~---~~~  395 (706)
T 2z3z_A          331 ------------RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG---KTK  395 (706)
T ss_dssp             ------------TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC---CCE
T ss_pred             ------------cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC---Cce
Confidence                        12345799999776666665444332334 789999999998887655    7888887542   222


Q ss_pred             eeeccCCCCCCeEEECCCCCEEEEE
Q 016199          274 KFIETLPGLPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       274 ~~~~~l~g~P~~i~~d~~G~lwva~  298 (393)
                      .+. . ......++++++|++++..
T Consensus       396 ~l~-~-~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          396 DLT-P-ESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             ESC-C-SSSEEEEEECTTSSEEEEE
T ss_pred             ecc-C-CCceEEEEECCCCCEEEEE
Confidence            222 1 1123467889999866544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.60  E-value=6.4e-06  Score=76.74  Aligned_cols=226  Identities=14%  Similarity=0.087  Sum_probs=136.3

Q ss_pred             CCCceEEEecCCC-EEEEEecCCeEEEEEc-CCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           83 KGPEDLLYDAHSK-LIYTGCEDGWIKRVTL-NDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~-~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      ....+++++++++ .|++++.+|.|..|+. +++.    ...+..  .......+++.+ +     +.++.+...+.|..
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~v~~l~~~~-~-----~~l~s~~~d~~i~i  126 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS----FQALTNNEANLGICRICKYG-D-----DKLIAASWDGLIEV  126 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS----EEECBSCCCCSCEEEEEEET-T-----TEEEEEETTSEEEE
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc----eEeccccCCCCceEEEEeCC-C-----CEEEEEcCCCeEEE
Confidence            4566799999999 8999999999999998 7665    555544  455678899988 5     15666655555777


Q ss_pred             EeCCc----e----EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-Ce--E
Q 016199          159 ISGNS----T----VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-KE--T  227 (393)
Q Consensus       159 id~~g----~----~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-~~--~  227 (393)
                      +|...    .    ........  ....+..+++.+++ ++++.                  ..+.|..||..+ +.  .
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~------------------~d~~i~i~d~~~~~~~~~  185 (342)
T 1yfq_A          127 IDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR-LIVGM------------------NNSQVQWFRLPLCEDDNG  185 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE-EEEEE------------------STTEEEEEESSCCTTCCC
T ss_pred             EcccccccccccccCCeeeEEe--eCCceEEEEecCCc-EEEEe------------------CCCeEEEEECCccccccc
Confidence            76432    0    00011111  11235678888887 65553                  356788999876 33  2


Q ss_pred             EEEe-cCccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCC--C--CcceeeeeccC--------CCCCCeEEECCCCC
Q 016199          228 KVLV-SDLYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGK--N--AGRVEKFIETL--------PGLPDNIRYDGEGH  293 (393)
Q Consensus       228 ~~~~-~~l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~--~--~~~~~~~~~~l--------~g~P~~i~~d~~G~  293 (393)
                      .... ..-.....+++++ +++.++++ ...+.+..|+++..  .  ......+....        .+....++++++|+
T Consensus       186 ~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  264 (342)
T 1yfq_A          186 TIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK  264 (342)
T ss_dssp             EEEECSCSSCEEEEEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred             eeeecCCCCceeEEEECCCCCCEEEEE-ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC
Confidence            2222 2234467899999 98766554 45788888887643  0  11122222111        11345678899998


Q ss_pred             EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCC-CCCccEEEEEeCCEEEE
Q 016199          294 YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDP-EMSLISSAIKIGDHLYC  371 (393)
Q Consensus       294 lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~-~~~~~~~~~~~~g~Lyi  371 (393)
                      +.++....                                  +.|..+|.+ ++.+..+... . ..+..+.+++..|..
T Consensus       265 ~l~~~~~d----------------------------------g~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s  309 (342)
T 1yfq_A          265 FLYTAGSD----------------------------------GIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCL  309 (342)
T ss_dssp             CEEEEETT----------------------------------SCEEEEETTTTEEEEECCCCSS-SEEEEEEECSSEEEE
T ss_pred             EEEEecCC----------------------------------ceEEEEcCccHhHhhhhhcccC-CCceEecCCCCeEEE
Confidence            66554432                                  347777764 6777666543 3 223333355566777


Q ss_pred             EecC
Q 016199          372 GSVH  375 (393)
Q Consensus       372 gs~~  375 (393)
                      ++..
T Consensus       310 ~s~D  313 (342)
T 1yfq_A          310 ATSD  313 (342)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            7643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.60  E-value=5.2e-05  Score=70.76  Aligned_cols=184  Identities=11%  Similarity=0.091  Sum_probs=115.3

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEE-EeCCCceEE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIV-ADAYKGLLK  158 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v-~~~~~gl~~  158 (393)
                      +....-.++++.++|+.|.+++.|+.|..|+..++.   ....+.........+++++++      .+++ +..++.|..
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~~------~~l~s~s~D~~i~v  133 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKA------SMIISGSRDKTIKV  133 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTS------CEEEEEETTSCEEE
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC---eeEEEccCCCcEEEEEEcCCC------CEEEEEeCCCeEEE
Confidence            333445668999999989999999999999987654   134444445667899999998      5544 444455777


Q ss_pred             EeCCc--eEEEeeccCCccccccccEEEcC------CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          159 ISGNS--TVLLTDEAEGQKFKLTDGVDVAD------DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       159 id~~g--~~~l~~~~~g~~~~~~~~l~~d~------dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                      +|.++  ...+.    +.. ..+..+.+.+      ++.++++.                 ...+.|..||..+.+....
T Consensus       134 wd~~~~~~~~~~----~h~-~~v~~~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~~wd~~~~~~~~~  191 (319)
T 3frx_A          134 WTIKGQCLATLL----GHN-DWVSQVRVVPNEKADDDSVTIISA-----------------GNDKMVKAWNLNQFQIEAD  191 (319)
T ss_dssp             EETTSCEEEEEC----CCS-SCEEEEEECCC------CCEEEEE-----------------ETTSCEEEEETTTTEEEEE
T ss_pred             EECCCCeEEEEe----ccC-CcEEEEEEccCCCCCCCccEEEEE-----------------eCCCEEEEEECCcchhhee
Confidence            78766  22221    111 1234555555      34344442                 3356788889877665443


Q ss_pred             e-cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          231 V-SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       231 ~-~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      . ......+.++++|||+.+ ++....+.|..|++...+  ....+.  .......++++++|.+.++..
T Consensus       192 ~~~h~~~v~~~~~sp~g~~l-~s~~~dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          192 FIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWNLAAKK--AMYTLS--AQDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             ECCCCSCEEEEEECTTSSEE-EEEETTCEEEEEETTTTE--EEEEEE--CCSCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCc--EEEEec--CCCcEEEEEEcCCCCEEEEEc
Confidence            3 234456789999999755 555567899999985432  112221  122345688999998666554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.59  E-value=1.1e-05  Score=75.36  Aligned_cols=190  Identities=9%  Similarity=0.018  Sum_probs=111.5

Q ss_pred             CCCceEEEecC---CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeee------EECCCCCCCCceEEEEEeCC
Q 016199           83 KGPEDLLYDAH---SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGI------AFANSDPDADRITMIVADAY  153 (393)
Q Consensus        83 ~~Pe~ia~d~~---g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl------~~d~~G~~~~~~~L~v~~~~  153 (393)
                      ....++++.++   |+.|++++.+|.|..|+...+..  ....+.........+      ++.++|     +.|+.+...
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~s~~~-----~~l~~~~~d  138 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--PVYSVKGHKEIINAIDGIGGLGIGEGA-----PEIVTGSRD  138 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS--CSEEECCCSSCEEEEEEESGGGCC-CC-----CEEEEEETT
T ss_pred             CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc--cEEEEEecccceEEEeeccccccCCCc-----cEEEEEeCC
Confidence            34567889888   57889999999999999875430  133333333445666      446677     145555545


Q ss_pred             CceEEEeCCc----eEEEeeccCCccccccccEE----EcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC
Q 016199          154 KGLLKISGNS----TVLLTDEAEGQKFKLTDGVD----VADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK  225 (393)
Q Consensus       154 ~gl~~id~~g----~~~l~~~~~g~~~~~~~~l~----~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~  225 (393)
                      +.|..+|...    ...+. ...+.....+..++    +.+++.++++.                 ...+.|..||..++
T Consensus       139 ~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~  200 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAG-----------------YDNGDIKLFDLRNM  200 (357)
T ss_dssp             SCEEEECTTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEE-----------------ETTSEEEEEETTTT
T ss_pred             CeEEEEeCCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEE-----------------ccCCeEEEEECccC
Confidence            5577777644    22221 11221112344555    56788766653                 33568999999888


Q ss_pred             eEEEEecCccCCCcEEEcC---CCCEEEEEeCCCCeEEEEEecCCCCcc-eeee-eccCCCCCCeEEECCCCC-EEEEE
Q 016199          226 ETKVLVSDLYFANGVVLSP---DQTHLVYCETSMRRCRKFYIKGKNAGR-VEKF-IETLPGLPDNIRYDGEGH-YLIAL  298 (393)
Q Consensus       226 ~~~~~~~~l~~~ngi~~s~---dg~~l~v~~~~~~ri~~~~~~g~~~~~-~~~~-~~~l~g~P~~i~~d~~G~-lwva~  298 (393)
                      +.............++++|   +++.++++ +..+.|..|++...+... .... .....+....++++++|. +.++.
T Consensus       201 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          201 ALRWETNIKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             EEEEEEECSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             ceeeecCCCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence            7655444445678899999   88766554 567899999986432111 1100 012223345677888888 44433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.59  E-value=8.7e-06  Score=78.40  Aligned_cols=192  Identities=10%  Similarity=0.046  Sum_probs=121.0

Q ss_pred             cCCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeee--ecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           82 LKGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNW--INTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        82 ~~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~--~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .....++++.+++ +.|++++.++.|..|+...+.   ....+  .........+++.++|     +.|+.+...+.|..
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~i  202 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA---AVLTLGPDVHPDTIYSVDWSRDG-----ALICTSCRDKRVRV  202 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE---EEEEECTTTCCSCEEEEEECTTS-----SCEEEEETTSEEEE
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC---ccEEEecCCCCCceEEEEECCCC-----CEEEEEecCCcEEE
Confidence            3556779999998 578888999999999988654   13333  2234567899999988     13555554555778


Q ss_pred             EeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEE-ecCcc
Q 016199          159 ISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVL-VSDLY  235 (393)
Q Consensus       159 id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~-~~~l~  235 (393)
                      +|....+.+.....+.....+..+.+.++|.++++..+              ....+.|..||..+++.  ... .....
T Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~  268 (402)
T 2aq5_A          203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSS  268 (402)
T ss_dssp             EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCS
T ss_pred             EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCC
Confidence            88754111111101111122567889999977665310              02356799999876442  222 22334


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCeEEECCCCCEEE
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE-TLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-~l~g~P~~i~~d~~G~lwv  296 (393)
                      ....+++++|++.++++....+.|..|++...+. ....+.. ...+...++++.++|.+.+
T Consensus       269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-FLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-CEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-ceEeecccccCCcccceEEecccccce
Confidence            5678899999999999988889999999964321 0122211 1123457788888877544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.59  E-value=2.8e-05  Score=71.09  Aligned_cols=239  Identities=8%  Similarity=0.044  Sum_probs=133.3

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+.-..-.++++ ++++.|++++.+|.|..|+.+++.   ....+.........+++.++|     +.|+++...+.+..
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~~   85 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEK-----ELLLFGGKDTMING   85 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTT-----TEEEEEETTSCEEE
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCC-----CEEEEecCCCeEEE
Confidence            333345567888 788889999999999999987653   122333335667899999988     24555544444555


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY  235 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~  235 (393)
                      ++...   .+.+. ...+. ...+..+.+  ++.++++-                 ...+.|..||. ......+.....
T Consensus        86 ~~~~~~~~~~~~~-~~~~~-~~~i~~~~~--~~~~l~~~-----------------~~d~~i~~~d~-~~~~~~~~~~~~  143 (313)
T 3odt_A           86 VPLFATSGEDPLY-TLIGH-QGNVCSLSF--QDGVVISG-----------------SWDKTAKVWKE-GSLVYNLQAHNA  143 (313)
T ss_dssp             EETTCCTTSCC-C-EECCC-SSCEEEEEE--ETTEEEEE-----------------ETTSEEEEEET-TEEEEEEECCSS
T ss_pred             EEeeecCCCCccc-chhhc-ccCEEEEEe--cCCEEEEE-----------------eCCCCEEEEcC-CcEEEecccCCC
Confidence            55422   11111 11111 122445666  34444442                 34567888883 233333444444


Q ss_pred             CCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcc
Q 016199          236 FANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPF  314 (393)
Q Consensus       236 ~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~  314 (393)
                      ....+++.+ +++.++ +....+.|..|+..    .....+..........+++.++|.+..+...              
T Consensus       144 ~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d--------------  204 (313)
T 3odt_A          144 SVWDAKVVSFSENKFL-TASADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISCSND--------------  204 (313)
T ss_dssp             CEEEEEEEETTTTEEE-EEETTSCEEEEETT----EEEEEECSSCSSCEEEEEEEETTEEEEEETT--------------
T ss_pred             ceeEEEEccCCCCEEE-EEECCCCEEEEecC----ceEEEEeccCcccEEEEEEcCCCeEEEccCC--------------
Confidence            556777777 776554 45567889988832    1122232113334566788888885544432              


Q ss_pred             hhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCC
Q 016199          315 IRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       315 ~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                                           +.|..+|. +++.+..+........+.....+++|+.++ ....|..+++.....
T Consensus       205 ---------------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~  258 (313)
T 3odt_A          205 ---------------------GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSL  258 (313)
T ss_dssp             ---------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEE-TTSEEEEECTTTCCE
T ss_pred             ---------------------CeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEe-cCCEEEEEECCCCce
Confidence                                 34666775 467776665433222222233345655554 455677777665543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.59  E-value=2.4e-06  Score=86.77  Aligned_cols=173  Identities=9%  Similarity=-0.014  Sum_probs=102.0

Q ss_pred             CceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCC-CceeeeEECCCCCCCCceEEEEEeC--C-C--ceE
Q 016199           85 PEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTG-GRPLGIAFANSDPDADRITMIVADA--Y-K--GLL  157 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~G~~~~~~~L~v~~~--~-~--gl~  157 (393)
                      -.++++++||+.|.+++. +|.+..|+.+++.    ...+.... .....++++++.      .+|.++.  . .  .|+
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~----~~~lt~~~~~~~~~~~~spd~------~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE----TVKLNREPINSVLDPHYGVGR------VILVRDVSKGAEQHALF   93 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTE----EEECCSSCCSEECEECTTCSE------EEEEEECSTTSCCEEEE
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCC----cEeeecccccccccccCCCCe------EEEEeccCCCCcceEEE
Confidence            345789999987765554 8877777766554    44443322 345667777654      6677764  1 1  366


Q ss_pred             EEeC--Cc-eEEEeeccCCccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          158 KISG--NS-TVLLTDEAEGQKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       158 ~id~--~g-~~~l~~~~~g~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      .++.  +| ...+. ...+     ....++.+||  .+|++.                  ..+.+..||.++++.+.+..
T Consensus        94 ~~~~~~~g~~~~l~-~~~~-----~~~~~~s~dg~~~~~~s~------------------~~~~~~l~d~~~g~~~~l~~  149 (582)
T 3o4h_A           94 KVNTSRPGEEQRLE-AVKP-----MRILSGVDTGEAVVFTGA------------------TEDRVALYALDGGGLRELAR  149 (582)
T ss_dssp             EEETTSTTCCEECT-TSCS-----BEEEEEEECSSCEEEEEE------------------CSSCEEEEEEETTEEEEEEE
T ss_pred             EEeccCCCcccccc-CCCC-----ceeeeeCCCCCeEEEEec------------------CCCCceEEEccCCcEEEeec
Confidence            6777  66 33221 1112     1133556665  344442                  12334577888887776654


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCC---CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          233 DLYFANGVVLSPDQTHLVYCETS---MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~---~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                      .-.  +.++++|||+.++++...   ...|+++++++.   +.+.+. ...+....+++++||+..+.
T Consensus       150 ~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g---~~~~l~-~~~~~~~~~~~SpDG~~l~~  211 (582)
T 3o4h_A          150 LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG---GLRVFD-SGEGSFSSASISPGMKVTAG  211 (582)
T ss_dssp             ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC---CCEEEC-CSSCEEEEEEECTTSCEEEE
T ss_pred             CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC---CceEee-cCCCccccceECCCCCEEEE
Confidence            322  789999999988755432   156888887543   233333 33334467889999996553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.58  E-value=1.3e-05  Score=74.95  Aligned_cols=199  Identities=12%  Similarity=0.134  Sum_probs=124.6

Q ss_pred             CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe----CCCceEEEeCCc--eEEEeeccCCcccc
Q 016199          104 GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD----AYKGLLKISGNS--TVLLTDEAEGQKFK  177 (393)
Q Consensus       104 g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~----~~~gl~~id~~g--~~~l~~~~~g~~~~  177 (393)
                      ..|++++.++..    .+.+...   + +..+..+|     +.||.++    ....|++++.+|  .+.+.....     
T Consensus        88 ~~Iy~i~~dg~~----~~~l~~~---~-~~~~s~~g-----~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----  149 (302)
T 3s25_A           88 NSLCRIKRNGHG----STVLDPD---P-CIYASLIG-----NYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----  149 (302)
T ss_dssp             EEEEEEETTSCC----CEEEECS---C-EEEEEEET-----TEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----
T ss_pred             CeEEEEeCCCCc----ceEeecC---C-ccEEEEeC-----CEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----
Confidence            479999998875    4444321   1 22333333     2888887    234599999988  455543211     


Q ss_pred             ccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC
Q 016199          178 LTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM  256 (393)
Q Consensus       178 ~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~  256 (393)
                          ..++++| .||+++.                 ....|++.+.+++..+.+..+..   ...+.|+++.||+++...
T Consensus       150 ----~~~~~~g~~iy~t~~-----------------g~~~Iy~~~l~g~~~~~l~~~~~---~~~~~P~g~~iy~t~~~~  205 (302)
T 3s25_A          150 ----FTCNTSDRYFYYNNP-----------------KNGQLYRYDTASQSEALFYDCNC---YKPVVLDDTNVYYMDVNR  205 (302)
T ss_dssp             ----CCSEEETTEEEEECT-----------------TTCCEEEEETTTTEEEEEECSCE---EEEEEEETTEEEEEEGGG
T ss_pred             ----eEeeEECCEEEEEeC-----------------CCceEEEEECCCCCEEEEeCCCc---cceeeecCCEEEEEEcCC
Confidence                1234554 8999962                 24579999998877666654322   234668999999998654


Q ss_pred             -CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCC
Q 016199          257 -RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKS  334 (393)
Q Consensus       257 -~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  334 (393)
                       .+|.+.+++|..   .+++.+. . .|   .++++|+ +|.+....                                 
T Consensus       206 ~~~I~~~~ldG~~---~~~Lt~~-~-~~---~~~~~g~~Iy~~~~~~---------------------------------  244 (302)
T 3s25_A          206 DNAIVHVNINNPN---PVVLTEA-N-IE---HYNVYGSLIFYQRGGD---------------------------------  244 (302)
T ss_dssp             TTEEEEECSSSCC---CEECSCS-C-EE---EEEEETTEEEEEECSS---------------------------------
T ss_pred             CcEEEEEECCCCC---eEEEeCC-C-cc---eEEECCCEEEEEECCC---------------------------------
Confidence             589999998642   2333321 1 22   2455555 44433221                                 


Q ss_pred             CceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          335 SSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       335 ~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                      ...|.+++.||...+.+....   ...+...+++||........|.+++++...
T Consensus       245 ~~~i~~~~~DG~~r~~l~~~~---~~~i~i~~d~Iy~td~~~~~i~~~~~dGs~  295 (302)
T 3s25_A          245 NPALCVVKNDGTGFKELAKGE---FCNINVTSQYVYFTDFVSNKEYCTSTQNPD  295 (302)
T ss_dssp             SCEEEEEETTSCCCEEEEESC---EEEEEECSSEEEEEETTTCCEEEEESSSCC
T ss_pred             CcEEEEEECCCCccEEeeCCc---cceEEEeCCEEEEEECCCCeEEEEECCCCC
Confidence            146899999997655554332   234566889999999888889999876543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.58  E-value=1.8e-05  Score=81.45  Aligned_cols=238  Identities=10%  Similarity=0.018  Sum_probs=133.0

Q ss_pred             EEEe--cCCCE-EEEEec-CCeEEEEEcC--C-CCCcceeeeeec-----CCCceeeeEECCCCCCCCceEEEEEeCC--
Q 016199           88 LLYD--AHSKL-IYTGCE-DGWIKRVTLN--D-SPADSLVHNWIN-----TGGRPLGIAFANSDPDADRITMIVADAY--  153 (393)
Q Consensus        88 ia~d--~~g~~-L~~~~~-~g~I~~~~~~--~-~~~~~~~~~~~~-----~~~~p~gl~~d~~G~~~~~~~L~v~~~~--  153 (393)
                      .++.  |||+. |+++.. +.+|+.++.+  + +.    ...+..     ......++++++||     +.|+++...  
T Consensus        82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~----~~~l~~~~~~~~~~~~~~~~~spDg-----~~l~~~~~~~~  152 (662)
T 3azo_A           82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV----PRPLTPVSAVGGGLRWADPVLLPER-----GEVWCMAEEFT  152 (662)
T ss_dssp             EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC----CEECSCCCCSTTCEEEEEEEEETTT-----TEEEEEEEEEC
T ss_pred             ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC----CEeccCCccCCCCccccCcEECCCC-----CEEEEEEeccc
Confidence            4444  88887 555543 6789999876  3 43    333332     13356789999999     245555332  


Q ss_pred             --------CceEEEeCC-------c-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcE
Q 016199          154 --------KGLLKISGN-------S-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGR  216 (393)
Q Consensus       154 --------~gl~~id~~-------g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~  216 (393)
                              ..|+.++.+       + .+.+..  .+.  .....++++|||+ |+++......         . .-....
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~~~--~~~~~~~~SpDG~~la~~~~~~~~---------~-~~~~~~  218 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--DAH--RFVTGPRLSPDGRQAVWLAWDHPR---------M-PWEGTE  218 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--SCS--SEECCCEECTTSSEEEEEEECTTC---------C-TTTCEE
T ss_pred             CCCCCCceeEEEEEECCCCccccCCceeEEEe--cCC--CcccCceECCCCCEEEEEECCCCC---------C-CCCCcE
Confidence                    247777764       3 222220  111  2345778999995 5555311100         0 001347


Q ss_pred             EEEEeCC-CC---eEEEEecC-ccCCCcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCCCC-------
Q 016199          217 LLSFDPV-TK---ETKVLVSD-LYFANGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLPGL-------  282 (393)
Q Consensus       217 l~~~d~~-t~---~~~~~~~~-l~~~ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~g~-------  282 (393)
                      |+.+|.+ ++   +.+.+..+ ......++++|||+ +|++....+  +|+++++++.   +.+.+.......       
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~  294 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTP  294 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCST
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCC---ceeecccccccccCccccc
Confidence            9999987 46   55555443 34567789999998 555554445  7888886432   222222111101       


Q ss_pred             -CCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEE
Q 016199          283 -PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISS  361 (393)
Q Consensus       283 -P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~  361 (393)
                       ...+++.++|++++.... ..                                ..|+.+|.++..++.+..+. ..+..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~-~~--------------------------------~~l~~~d~~~~~~~~l~~~~-~~~~~  340 (662)
T 3azo_A          295 GMRWFAPLANGLIAVVHGK-GA--------------------------------AVLGILDPESGELVDAAGPW-TEWAA  340 (662)
T ss_dssp             TCCSEEECTTSCEEEEEBS-SS--------------------------------CEEEEEETTTTEEEECCSSC-CEEEE
T ss_pred             cCceEeEeCCCEEEEEEEc-Cc--------------------------------cEEEEEECCCCcEEEecCCC-CeEEE
Confidence             235777778887766543 11                                35788887766666665432 22333


Q ss_pred             E-EEeCCEEEEEecCCC---eEEEEeCCC
Q 016199          362 A-IKIGDHLYCGSVHHR---GILHLDVNQ  386 (393)
Q Consensus       362 ~-~~~~g~Lyigs~~~~---~i~~~~~~~  386 (393)
                      + ..+++.+++.+...+   .|.+++++.
T Consensus       341 ~~s~~~~~~~~~~~~~~~~~~i~~~d~~~  369 (662)
T 3azo_A          341 TLTVSGTRAVGVAASPRTAYEVVELDTVT  369 (662)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            3 455666665544433   566666543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.57  E-value=1.6e-05  Score=74.44  Aligned_cols=214  Identities=8%  Similarity=0.102  Sum_probs=134.0

Q ss_pred             cCCCEEEEEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC--------------Cc
Q 016199           92 AHSKLIYTGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY--------------KG  155 (393)
Q Consensus        92 ~~g~~L~~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~--------------~g  155 (393)
                      .+|+.||....  +++|++++.++..    .+.+..  ..+..|..+. +      .||.++..              ..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~----~~~l~~--~~~~~i~~~g-~------~Iyy~~~~~~~~~~~~~~~~n~~~   89 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN----IHKLSN--DTAMYINADK-N------YVYYVRNNNQKITSQTFFSYDRNS   89 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS----CEEEEE--EEEEEEEECS-S------EEEEEEECC------CCSSCCSEE
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC----CEEccC--CceeeEEEcC-C------EEEEEECCCCcccccceeccCCCe
Confidence            34557888763  5689999988765    444432  2355565543 3      67666432              35


Q ss_pred             eEEEeCCc--eEEEeeccCCccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199          156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS  232 (393)
Q Consensus       156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~  232 (393)
                      |++++.+|  .+.+... .        +..+.++ +.||+++.+.              .....|++.+.++...+.+..
T Consensus        90 Iy~i~~dg~~~~~l~~~-~--------~~~~s~~g~~Iy~~~~~~--------------~~~~~Iy~~~~dGs~~~~lt~  146 (302)
T 3s25_A           90 LCRIKRNGHGSTVLDPD-P--------CIYASLIGNYIYYLHYDT--------------QTATSLYRIRIDGEEKKKIKN  146 (302)
T ss_dssp             EEEEETTSCCCEEEECS-C--------EEEEEEETTEEEEEEESS--------------SSCEEEEEEETTSCCCEEEES
T ss_pred             EEEEeCCCCcceEeecC-C--------ccEEEEeCCEEEEEeecC--------------CCCceEEEEECCCCCeEEEeC
Confidence            89999888  3444321 1        1234444 4899986111              234679999998777776665


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhc
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYR  311 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~  311 (393)
                      ...    .+++++++.|||++.....|++.+++|..   .+.+.++    +..+.++++|+ ++.......         
T Consensus       147 ~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~---~~~l~~~----~~~~~~~P~g~~iy~t~~~~~---------  206 (302)
T 3s25_A          147 HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS---EALFYDC----NCYKPVVLDDTNVYYMDVNRD---------  206 (302)
T ss_dssp             SCC----CCSEEETTEEEEECTTTCCEEEEETTTTE---EEEEECS----CEEEEEEEETTEEEEEEGGGT---------
T ss_pred             CCc----eEeeEECCEEEEEeCCCceEEEEECCCCC---EEEEeCC----CccceeeecCCEEEEEEcCCC---------
Confidence            433    45678999999999888899999987642   2333322    22344555555 444433210         


Q ss_pred             CcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEec-CCCeEEEEeCCCCC
Q 016199          312 YPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSV-HHRGILHLDVNQHP  388 (393)
Q Consensus       312 ~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~-~~~~i~~~~~~~~~  388 (393)
                                              ..|.+.+.+|.....+.+...   ..+...+++||..+. ....|.+.+++...
T Consensus       207 ------------------------~~I~~~~ldG~~~~~Lt~~~~---~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          207 ------------------------NAIVHVNINNPNPVVLTEANI---EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             ------------------------TEEEEECSSSCCCEECSCSCE---EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             ------------------------cEEEEEECCCCCeEEEeCCCc---ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence                                    358999999887777764332   335667889988743 35788888876643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.57  E-value=1.7e-05  Score=75.53  Aligned_cols=192  Identities=8%  Similarity=-0.038  Sum_probs=111.0

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc---ceeeeeecCCCceeeeEECCC----C---CCCCceEEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD---SLVHNWINTGGRPLGIAFANS----D---PDADRITMI  148 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~---~~~~~~~~~~~~p~gl~~d~~----G---~~~~~~~L~  148 (393)
                      .+.-..-.++++++  +.|++++.+|.|..|+.++....   .....+.........+++.++    |   .     .|+
T Consensus        13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-----~l~   85 (397)
T 1sq9_A           13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-----LVA   85 (397)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-----EEE
T ss_pred             hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc-----EEE
Confidence            34334556788987  57999999999999998764310   013333333455788888877    3   2     677


Q ss_pred             EEeCCCceEEEeCCc-e---EEEeeccCCcc----ccccccEEEc----CCCcE-EEEeCCCccchhhheehhcccCCCc
Q 016199          149 VADAYKGLLKISGNS-T---VLLTDEAEGQK----FKLTDGVDVA----DDGMI-YFTDASNKYYLREYILDIFEGKPNG  215 (393)
Q Consensus       149 v~~~~~gl~~id~~g-~---~~l~~~~~g~~----~~~~~~l~~d----~dG~l-~~td~~~~~~~~~~~~~~~e~~~~g  215 (393)
                      .+...+.|..++.+. .   ........+..    ...+..+++.    ++|.. +++.                 ...+
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-----------------~~dg  148 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-----------------DVKG  148 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-----------------ETTS
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-----------------eCCC
Confidence            776566677776543 1   11111111111    1346688999    88865 5542                 2345


Q ss_pred             EEEEEeCCC------C-eEE-----EEe-------cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee
Q 016199          216 RLLSFDPVT------K-ETK-----VLV-------SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI  276 (393)
Q Consensus       216 ~l~~~d~~t------~-~~~-----~~~-------~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~  276 (393)
                      .|..||..+      + ...     .+.       ........+++++++  ++++....+.|..|++...+  ....+.
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~  224 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFE  224 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEE
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEe
Confidence            677776654      2 222     221       124457889999999  55666678899999985321  122222


Q ss_pred             cc---C---CCCCCeEEECCCCCEEEEEe
Q 016199          277 ET---L---PGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       277 ~~---l---~g~P~~i~~d~~G~lwva~~  299 (393)
                       .   .   ......++++++|++.++..
T Consensus       225 -~~~~h~~~~~~i~~i~~~~~~~~l~~~~  252 (397)
T 1sq9_A          225 -SQHSMINNSNSIRSVKFSPQGSLLAIAH  252 (397)
T ss_dssp             -CCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred             -ccccccccCCccceEEECCCCCEEEEEe
Confidence             2   1   33346688999998666544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.56  E-value=2.3e-06  Score=82.20  Aligned_cols=188  Identities=11%  Similarity=0.101  Sum_probs=112.2

Q ss_pred             CCceEEEecCCC-EEEEE----------ecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE-EEEEe
Q 016199           84 GPEDLLYDAHSK-LIYTG----------CEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT-MIVAD  151 (393)
Q Consensus        84 ~Pe~ia~d~~g~-~L~~~----------~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~  151 (393)
                      ...+++++|+|+ .|.++          +.++.|..|+..++........+ ........+++.++|      + |..+.
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~------~~l~~~~   86 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN------KIIAGAL   86 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS------SCEEEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC------CeEEEEc
Confidence            345577899986 77777          66788999998764311012222 224567899999998      5 44554


Q ss_pred             CCCceEEEeCCc----eEEEeeccCCccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe
Q 016199          152 AYKGLLKISGNS----TVLLTDEAEGQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE  226 (393)
Q Consensus       152 ~~~gl~~id~~g----~~~l~~~~~g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~  226 (393)
                      ..+.|..++.+.    .+.+. ...+.. ..+..+++.++ +.++++-                 ...+.|..||..+++
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~-~~~~h~-~~v~~~~~~~~~~~~l~s~-----------------~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMA-RFSNHS-SSVKTVKFNAKQDNVLASG-----------------GNNGEIFIWDMNKCT  147 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEE-ECCCSS-SCCCEEEECSSSTTBEEEE-----------------CSSSCEEBCBTTTTS
T ss_pred             cCCeEEEeecccccccccchh-hccCCc-cceEEEEEcCCCCCEEEEE-----------------cCCCeEEEEECCCCc
Confidence            445577776543    11221 122211 34678999998 6666653                 335678888887664


Q ss_pred             ------EEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-----CCCCCeEEECCC
Q 016199          227 ------TKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-----PGLPDNIRYDGE  291 (393)
Q Consensus       227 ------~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-----~g~P~~i~~d~~  291 (393)
                            ....    .........+++++++..++++....+.|..|++...+  ....+....     ......++++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (416)
T 2pm9_A          148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPK  225 (416)
T ss_dssp             SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred             cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCC
Confidence                  2111    11234567899999955677777778999999986431  111221110     223456888998


Q ss_pred             CC-EEEEEe
Q 016199          292 GH-YLIALA  299 (393)
Q Consensus       292 G~-lwva~~  299 (393)
                      |. ++++..
T Consensus       226 ~~~~l~~~~  234 (416)
T 2pm9_A          226 NSTRVATAT  234 (416)
T ss_dssp             CTTEEEEEE
T ss_pred             CCCEEEEEE
Confidence            74 555444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.55  E-value=1.9e-05  Score=82.90  Aligned_cols=260  Identities=9%  Similarity=0.069  Sum_probs=141.9

Q ss_pred             ceEEEecCCCEEEEEecC---------CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCce
Q 016199           86 EDLLYDAHSKLIYTGCED---------GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGL  156 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~---------g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl  156 (393)
                      .+++++|||+.|.+++.+         +.++.++.++++    ...+....+.....++.+||     +.|..+ ....|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~----~~~l~~~~~~~~~~~~SPdG-----~~la~~-~~~~i  134 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ----LITEERIPNNTQWVTWSPVG-----HKLAYV-WNNDI  134 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----ECCSSCCCTTEEEEEECSST-----TCEEEE-ETTEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc----EEEcccCCCcceeeEECCCC-----CEEEEE-ECCeE
Confidence            347899999988776653         567789988775    44443333456788899999     134333 45678


Q ss_pred             EEEeCCc--eEEEeec-cC-----Ccc--------ccccccEEEcCCCc-EEEEe--CCC--ccchhhh-----------
Q 016199          157 LKISGNS--TVLLTDE-AE-----GQK--------FKLTDGVDVADDGM-IYFTD--ASN--KYYLREY-----------  204 (393)
Q Consensus       157 ~~id~~g--~~~l~~~-~~-----g~~--------~~~~~~l~~d~dG~-l~~td--~~~--~~~~~~~-----------  204 (393)
                      +.++.++  ...+... ..     |.+        +....++.++|||. |.++.  .+.  .+.+..+           
T Consensus       135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~  214 (740)
T 4a5s_A          135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV  214 (740)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred             EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence            8888655  3333211 00     100        12234588999995 55542  110  0000000           


Q ss_pred             --eeh-hcccCCCcEEEEEeCCC---C---eEEEEec------CccCCCcEEEcCCCCEEE-EEeCCC--CeEEEEEecC
Q 016199          205 --ILD-IFEGKPNGRLLSFDPVT---K---ETKVLVS------DLYFANGVVLSPDQTHLV-YCETSM--RRCRKFYIKG  266 (393)
Q Consensus       205 --~~~-~~e~~~~g~l~~~d~~t---~---~~~~~~~------~l~~~ngi~~s~dg~~l~-v~~~~~--~ri~~~~~~g  266 (393)
                        .+- ..+......|+.+|.++   +   +...+..      .......++++|||+.++ +..+..  ..|+.+++++
T Consensus       215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence              000 00112234789999988   6   5555432      223455688999998443 334332  2688888864


Q ss_pred             CC----Ccceeeee-ccCCCC-----CCeEEECCCCCEEE-EEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCC
Q 016199          267 KN----AGRVEKFI-ETLPGL-----PDNIRYDGEGHYLI-ALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSS  335 (393)
Q Consensus       267 ~~----~~~~~~~~-~~l~g~-----P~~i~~d~~G~lwv-a~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  335 (393)
                      .+    ......+. +...+.     +...++.+||+.++ -.. .++                              ..
T Consensus       295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s-~~~------------------------------G~  343 (740)
T 4a5s_A          295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS-NEE------------------------------GY  343 (740)
T ss_dssp             TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEE-CTT------------------------------SC
T ss_pred             CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEE-cCC------------------------------Cc
Confidence            32    11111111 111111     34678899998332 221 111                              12


Q ss_pred             ceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecC------CCeEEEEeCCC
Q 016199          336 SGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVH------HRGILHLDVNQ  386 (393)
Q Consensus       336 ~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~------~~~i~~~~~~~  386 (393)
                      ..|+.+|.+|+....+.............++++||+.+..      ...|.+++++.
T Consensus       344 ~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g  400 (740)
T 4a5s_A          344 RHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLID  400 (740)
T ss_dssp             EEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred             eEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence            4689999888777777655433223333557888887754      24788877653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.55  E-value=1.4e-05  Score=82.91  Aligned_cols=200  Identities=8%  Similarity=0.013  Sum_probs=109.1

Q ss_pred             CCceEEEecCCCEEEEEecC---------CeEEEEEcCCCCCcceeeeeecCCC---ceeeeEECCCCCCCCceEEEEEe
Q 016199           84 GPEDLLYDAHSKLIYTGCED---------GWIKRVTLNDSPADSLVHNWINTGG---RPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~---------g~I~~~~~~~~~~~~~~~~~~~~~~---~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      ...+++++|||+.|.++..+         +.|+.++.+++.    ...+....+   .+..+++.+||     +.|.++ 
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~SPdG-----~~la~~-  131 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD----PQSLDPPEVSNAKLQYAGWGPKG-----QQLIFI-  131 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC----CEECCCTTCCSCCCSBCCBCSST-----TCEEEE-
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc----eEeccCCccccccccccEECCCC-----CEEEEE-
Confidence            37889999999977776543         678899988765    333322211   26678999999     134444 


Q ss_pred             CCCceEEEeCCc--eEEEeec-cCCcc-------------ccccccEEEcCCCc-EEEEeCCCccchhhheeh-------
Q 016199          152 AYKGLLKISGNS--TVLLTDE-AEGQK-------------FKLTDGVDVADDGM-IYFTDASNKYYLREYILD-------  207 (393)
Q Consensus       152 ~~~gl~~id~~g--~~~l~~~-~~g~~-------------~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~-------  207 (393)
                      ....|+.++.++  ...+... ..+..             +....+++++|||+ |+++..... ....|-..       
T Consensus       132 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~-~~~~~~~~~~~~~~~  210 (723)
T 1xfd_A          132 FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS-RVPIMELPTYTGSIY  210 (723)
T ss_dssp             ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT-TSCEEEECCCSSSSS
T ss_pred             ECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC-ccceEEeeccCCcCC
Confidence            346788888765  3333221 11110             11235789999995 555431100 00000000       


Q ss_pred             ----------hcccCCCcEEEEEeCCCCeE-EEEecC------ccCCCcEEEcCCCCEEEEE-eCC--CCeEEEEEecCC
Q 016199          208 ----------IFEGKPNGRLLSFDPVTKET-KVLVSD------LYFANGVVLSPDQTHLVYC-ETS--MRRCRKFYIKGK  267 (393)
Q Consensus       208 ----------~~e~~~~g~l~~~d~~t~~~-~~~~~~------l~~~ngi~~s~dg~~l~v~-~~~--~~ri~~~~~~g~  267 (393)
                                ..+......|+.+|..+++. ..+...      ......++++|||+.+++. +..  ...|+.+++++.
T Consensus       211 ~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g  290 (723)
T 1xfd_A          211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (723)
T ss_dssp             CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             CcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence                      00001234789999887764 333321      1234568999999866443 332  246778887543


Q ss_pred             CCcceeeee-ccCCCC----CCeEEECCCCC-EEEE
Q 016199          268 NAGRVEKFI-ETLPGL----PDNIRYDGEGH-YLIA  297 (393)
Q Consensus       268 ~~~~~~~~~-~~l~g~----P~~i~~d~~G~-lwva  297 (393)
                         +..... ....+.    +..+++++||+ ++++
T Consensus       291 ---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          291 ---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             ---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             ---cceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence               222221 111122    24788999998 4443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.54  E-value=2.5e-05  Score=72.05  Aligned_cols=204  Identities=14%  Similarity=0.082  Sum_probs=111.9

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc-ceeeeeecCCCceeeeEECC--CCCCCCceEEEEEeCCCc
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD-SLVHNWINTGGRPLGIAFAN--SDPDADRITMIVADAYKG  155 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~--~G~~~~~~~L~v~~~~~g  155 (393)
                      .|....-.+++++++++.|.+++.+|.|..|+...+... .....+.........+++.+  +|     +.|..+...+.
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-----~~l~s~~~dg~   82 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-----RIIASASYDKT   82 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-----SEEEEEETTSC
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-----CEEEEEcCCCe
Confidence            444455677999999998999999999999998764311 11223333445678999987  46     14555544445


Q ss_pred             eEEEeCCc-e--------EEEeeccCCccccccccEEEcCC--CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          156 LLKISGNS-T--------VLLTDEAEGQKFKLTDGVDVADD--GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       156 l~~id~~g-~--------~~l~~~~~g~~~~~~~~l~~d~d--G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      |..+|.+. .        +.+. ...+. ...+.++++.++  +.++++.                 ...+.|..||..+
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~l~~~-----------------~~dg~v~iwd~~~  143 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLC-TLNDS-KGSLYSVKFAPAHLGLKLACL-----------------GNDGILRLYDALE  143 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEE-EECCC-SSCEEEEEECCGGGCSEEEEE-----------------ETTCEEEEEECSS
T ss_pred             EEEEecCCCcccccccCcceee-eeccc-CCceeEEEEcCCCCCcEEEEe-----------------cCCCcEEEecCCC
Confidence            66666543 1        2221 11111 133668899998  8755552                 3356788888765


Q ss_pred             CeEE------EEe--------cCccCCCcEEEcCC---CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEE
Q 016199          225 KETK------VLV--------SDLYFANGVVLSPD---QTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIR  287 (393)
Q Consensus       225 ~~~~------~~~--------~~l~~~ngi~~s~d---g~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~  287 (393)
                      ++..      ...        ........++++|+   ++.++++. ..+.+..++....+......+. ...+....++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~  221 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSIS  221 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEEEEEECC-CCCSCEEEEE
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCceeeeeecC-CCCcceeEEE
Confidence            5311      000        12234567888887   65555544 4555543333221110111111 1222335677


Q ss_pred             ECCCC----CEEEEEec-Ccchhhhh
Q 016199          288 YDGEG----HYLIALAT-EFSTYWDL  308 (393)
Q Consensus       288 ~d~~G----~lwva~~~-~r~~~~~~  308 (393)
                      ++++|    ++.++... +.-.+||+
T Consensus       222 ~~p~~~~~~~~l~s~~~dg~i~iwd~  247 (351)
T 3f3f_A          222 WAPSIGRWYQLIATGCKDGRIRIFKI  247 (351)
T ss_dssp             ECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred             ECCCCCCcceEEEEEcCCCeEEEEeC
Confidence            88887    55544433 33344444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.53  E-value=3.4e-05  Score=72.19  Aligned_cols=153  Identities=10%  Similarity=0.022  Sum_probs=96.6

Q ss_pred             CCceEEEecC----CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCCceEE
Q 016199           84 GPEDLLYDAH----SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        84 ~Pe~ia~d~~----g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      ...++++.++    |+.|++++.+|.|..|+..++.   ....+.........+++.+ ++     +.|+.+...+.|..
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~-----~~l~s~~~dg~i~i  142 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---CIKHYVGHGNAINELKFHPRDP-----NLLLSVSKDHALRL  142 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---EEEEEESCCSCEEEEEECSSCT-----TEEEEEETTSCEEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---EeeeecCCCCcEEEEEECCCCC-----CEEEEEeCCCeEEE
Confidence            3566889998    6678899999999999987654   1334443456788999998 77     14555555556788


Q ss_pred             EeCCc-e--EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-----
Q 016199          159 ISGNS-T--VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-----  230 (393)
Q Consensus       159 id~~g-~--~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-----  230 (393)
                      +|... .  ..+. ...+. ...+..++++++|..+++-                 ...+.|..||..+++....     
T Consensus       143 wd~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~  203 (366)
T 3k26_A          143 WNIQTDTLVAIFG-GVEGH-RDEVLSADYDLLGEKIMSC-----------------GMDHSLKLWRINSKRMMNAIKESY  203 (366)
T ss_dssp             EETTTTEEEEEEC-STTSC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESCSHHHHHHHHHHH
T ss_pred             EEeecCeEEEEec-ccccc-cCceeEEEECCCCCEEEEe-----------------cCCCCEEEEECCCCccccccceeE
Confidence            88754 2  2221 11121 1346788999999766553                 2345688888765432110     


Q ss_pred             ------------------------ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          231 ------------------------VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       231 ------------------------~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                                              .........++++  ++ ++++....+.|..|++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~  260 (366)
T 3k26_A          204 DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGK  260 (366)
T ss_dssp             TCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESS
T ss_pred             EecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCC
Confidence                                    0022335667776  54 556666789999999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.51  E-value=7.9e-06  Score=82.55  Aligned_cols=189  Identities=11%  Similarity=0.038  Sum_probs=119.3

Q ss_pred             CCCceEEE-e-cCCCEEEEEec------------------CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCC
Q 016199           83 KGPEDLLY-D-AHSKLIYTGCE------------------DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDA  142 (393)
Q Consensus        83 ~~Pe~ia~-d-~~g~~L~~~~~------------------~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~  142 (393)
                      ++|+++++ . |+++.+|+++.                  ++.+-.+|.++.+    +......++.|.+++++++|   
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~----v~~qI~Vgg~pd~~~~spdG---  206 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE----VAWQVLVSGNLDNCDADYEG---  206 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE----EEEEEEESSCCCCEEECSSS---
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe----EEEEEEeCCCccceEECCCC---
Confidence            68999998 4 89999999852                  3357778877654    43333455689999999998   


Q ss_pred             CceEEEEEeCCC--c-------------eEEEeC--------Cc-------eEEEeecc-CCcc-------ccccccEEE
Q 016199          143 DRITMIVADAYK--G-------------LLKISG--------NS-------TVLLTDEA-EGQK-------FKLTDGVDV  184 (393)
Q Consensus       143 ~~~~L~v~~~~~--g-------------l~~id~--------~g-------~~~l~~~~-~g~~-------~~~~~~l~~  184 (393)
                        +.+|++....  +             +..++.        +|       +.++-... .+..       ...++++.+
T Consensus       207 --k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~  284 (595)
T 1fwx_A          207 --KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNM  284 (595)
T ss_dssp             --SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEE
T ss_pred             --CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEE
Confidence              3577775322  1             222221        11       11221111 0111       246899999


Q ss_pred             cCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe------------EEEEecCccCCCcEEEcCCCCEEEE
Q 016199          185 ADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE------------TKVLVSDLYFANGVVLSPDQTHLVY  251 (393)
Q Consensus       185 d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~------------~~~~~~~l~~~ngi~~s~dg~~l~v  251 (393)
                      +||| .+|+++                 .....|..||..+.+            +.....--..|.+++|++|| ++|+
T Consensus       285 sPDGk~v~V~~-----------------~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~  346 (595)
T 1fwx_A          285 APDKKHLCVAG-----------------KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYT  346 (595)
T ss_dssp             CTTSSEEEEEC-----------------TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEE
T ss_pred             cCCCCEEEEeC-----------------CCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEE
Confidence            9999 588886                 344578888876431            21112223469999999999 9999


Q ss_pred             EeCCCCeEEEEEecC-------CCCcceeeeeccCC--CCC------CeEEECCCCCEEEEEecC
Q 016199          252 CETSMRRCRKFYIKG-------KNAGRVEKFIETLP--GLP------DNIRYDGEGHYLIALATE  301 (393)
Q Consensus       252 ~~~~~~ri~~~~~~g-------~~~~~~~~~~~~l~--g~P------~~i~~d~~G~lwva~~~~  301 (393)
                      +....+.|.+|+++.       ++..+   .++.++  -.|      -+++.++||++.++++..
T Consensus       347 t~~ldsqV~kwdi~~a~~~~~g~~~~~---vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          347 SLFLDSQVVKWNIEDAIRAYAGEKVDP---IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             EETTTTEEEEEEHHHHHHHHHTCSCCC---EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             EEecCCcEEEEEhhHhhhhhcccccce---eEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence            999999999999864       11111   111111  123      456779999988877754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.51  E-value=9.3e-05  Score=71.17  Aligned_cols=189  Identities=9%  Similarity=0.048  Sum_probs=119.8

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ...+++++  ++.+++++.+|.|..|+.....  .....+....+...++++.++|     +.|.++...+.|..+|...
T Consensus       178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~-----~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDG-----LQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTC
T ss_pred             ceEEEEEC--CCEEEEEcCCCCEEEEecccCc--ceeeEEcCCCCCeeEEEEcCCC-----CEEEEEeCCCeEEEccCCC
Confidence            34456664  4678899999999999987432  1133444445678899999988     2455555556677888754


Q ss_pred             -eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVV  241 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~  241 (393)
                       .....  ..+. ...+..+++.++| .++++..+               +..+.|..||..+++.......-.....++
T Consensus       249 ~~~~~~--~~~~-~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~  310 (401)
T 4aez_A          249 SIPKFT--KTNH-NAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARVNTVDAGSQVTSLI  310 (401)
T ss_dssp             SSEEEE--ECCC-SSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             CCccEE--ecCC-cceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence             21111  1111 1346789999977 66665311               235789999988776554444445578899


Q ss_pred             EcCCCCEEEEE-eCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          242 LSPDQTHLVYC-ETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       242 ~s~dg~~l~v~-~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      ++++++.++++ ....+.|..|++...+......+ ....+....++++++|.+.++...
T Consensus       311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             ECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE-ECCSSCCCEEEECTTSSEEEEECT
T ss_pred             ECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe-cCCCCCEEEEEECCCCCEEEEEeC
Confidence            99999887766 44678999999864321111111 123334567899999997766543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.49  E-value=8e-07  Score=88.99  Aligned_cols=77  Identities=26%  Similarity=0.394  Sum_probs=59.3

Q ss_pred             CccccccccEEEcCCCcEEE-EeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEE
Q 016199          173 GQKFKLTDGVDVADDGMIYF-TDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHL  249 (393)
Q Consensus       173 g~~~~~~~~l~~d~dG~l~~-td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l  249 (393)
                      +..++.|++|++|++|+||| +|.+....      ...++.....+|++++.+++++.++..  ...++|++++||++.|
T Consensus       472 ~~~fnsPDnL~fd~~G~LWf~TD~~~~~~------g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktL  545 (592)
T 4a9v_A          472 QNMFNSPDGLGFDKAGRLWILTDGDSSNA------GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTL  545 (592)
T ss_dssp             TTCCCCEEEEEECTTCCEEEEECCCCCCS------GGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEE
T ss_pred             cCccCCCCceEECCCCCEEEEeCCCcCcc------ccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEE
Confidence            34578899999999999999 88654210      112334556899999999999888754  4568999999999999


Q ss_pred             EEEeCC
Q 016199          250 VYCETS  255 (393)
Q Consensus       250 ~v~~~~  255 (393)
                      ||+-..
T Consensus       546 fV~vQH  551 (592)
T 4a9v_A          546 FVGIQH  551 (592)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            998653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.48  E-value=5.1e-06  Score=91.80  Aligned_cols=184  Identities=9%  Similarity=0.006  Sum_probs=119.4

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....+++++++|+.|.+++.+|.|..|+..++.    .............+++.+++      .++.+...+.+..+|..
T Consensus      1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~------~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A         1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQDS------RLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp             SCCCCEEECSSSSCEEEECSSSBEEEEETTTTE----EECCBCCSSCEEEEEECSSS------EEEEEESSSEEEEEETT
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCc----eEEEecCCCcEEEEEEcCCC------cEEEEECCCcEEEEECC
Confidence            445679999999988899999999999988764    33333334567889999998      88888777778888864


Q ss_pred             c---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCC
Q 016199          163 S---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFAN  238 (393)
Q Consensus       163 g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~n  238 (393)
                      .   ...+...     ...+..++++++|..+++.                 ...+.|..||..+++... +........
T Consensus      1074 ~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~s~-----------------s~d~~v~iwd~~~~~~~~~l~~h~~~v~ 1131 (1249)
T 3sfz_A         1074 TGRIERDFTCH-----QGTVLSCAISSDATKFSST-----------------SADKTAKIWSFDLLSPLHELKGHNGCVR 1131 (1249)
T ss_dssp             TTCCCEEEECC-----SSCCCCEEECSSSSSCEEE-----------------CCSSCCCEECSSSSSCSBCCCCCSSCEE
T ss_pred             CCceeEEEccc-----CCcEEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCcceeeeeccCCCcEE
Confidence            4   2222211     1235688999999655553                 334567788876654322 222233457


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCC-Ccceeee-----eccCCCCCCeEEECCCCCEEEEEe
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGRVEKF-----IETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~~~~~-----~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+++++||+.+.. ...++.|..|++...+ .......     .....+....++++++|.+.++..
T Consensus      1132 ~~~~s~dg~~lat-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A         1132 CSAFSLDGILLAT-GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp             EEEECSSSSEEEE-EETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred             EEEECCCCCEEEE-EeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence            8999999976654 4567889999986432 1111000     011223456789999999776554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.48  E-value=7e-05  Score=72.48  Aligned_cols=195  Identities=9%  Similarity=0.094  Sum_probs=113.3

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCC-------c-ceeeeeecCC------------CceeeeEECCCCCCCC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPA-------D-SLVHNWINTG------------GRPLGIAFANSDPDAD  143 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~-------~-~~~~~~~~~~------------~~p~gl~~d~~G~~~~  143 (393)
                      .-.+++++++|+.|.+++.+|.|..|+..++..       . .....+....            .....+++.+++.   
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~---  106 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN---  106 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS---
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC---
Confidence            345689999999999999999999999875430       0 0122222222            4477899988740   


Q ss_pred             ceEEEEEeCCCceEEEeCCc-eEEEe--------------------------------------eccCCccccccccEEE
Q 016199          144 RITMIVADAYKGLLKISGNS-TVLLT--------------------------------------DEAEGQKFKLTDGVDV  184 (393)
Q Consensus       144 ~~~L~v~~~~~gl~~id~~g-~~~l~--------------------------------------~~~~g~~~~~~~~l~~  184 (393)
                      ...|+.+...+.|..++... .....                                      ....+. ...+..+++
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~  185 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH-TYHINSISI  185 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC-SSCCCEEEE
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC-CcceEEEEE
Confidence            01577775555566665432 10000                                      001111 234678899


Q ss_pred             cCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEe--------cCccCCCcEEEcCCCCEEEEEeCC
Q 016199          185 ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLV--------SDLYFANGVVLSPDQTHLVYCETS  255 (393)
Q Consensus       185 d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~--------~~l~~~ngi~~s~dg~~l~v~~~~  255 (393)
                      .++|.++++.                  ..+.|..||..+. +.....        ......+.++++|++..++++.+.
T Consensus       186 ~~~~~~l~s~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  247 (447)
T 3dw8_B          186 NSDYETYLSA------------------DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS  247 (447)
T ss_dssp             CTTSSEEEEE------------------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred             cCCCCEEEEe------------------CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence            9999877762                  2467888888632 222111        122346789999998445566667


Q ss_pred             CCeEEEEEecCCCCc--ceeeeeccCC-----------CCCCeEEECCCCCEEEEEec
Q 016199          256 MRRCRKFYIKGKNAG--RVEKFIETLP-----------GLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       256 ~~ri~~~~~~g~~~~--~~~~~~~~l~-----------g~P~~i~~d~~G~lwva~~~  300 (393)
                      .+.|..|++...+..  ....+.....           +....++++++|++.++...
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            889999998643211  1222321110           12356889999998776554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.47  E-value=9.6e-05  Score=70.11  Aligned_cols=188  Identities=13%  Similarity=0.083  Sum_probs=114.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc---ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD---SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~---~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      ....++++.|+|+.+.++..++.+..|+.......   .....+....+....+++.+++     ..|+.+...+.|..+
T Consensus       107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~l~t~s~D~~v~lw  181 (354)
T 2pbi_B          107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-----MQILTASGDGTCALW  181 (354)
T ss_dssp             SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-----SEEEEEETTSEEEEE
T ss_pred             CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-----CEEEEEeCCCcEEEE
Confidence            34567999999998889999999888877543210   0112222234556788999887     246666555557777


Q ss_pred             eCCc---eEEEeeccCCccccccccEEEcC--CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cC
Q 016199          160 SGNS---TVLLTDEAEGQKFKLTDGVDVAD--DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SD  233 (393)
Q Consensus       160 d~~g---~~~l~~~~~g~~~~~~~~l~~d~--dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~  233 (393)
                      |.+.   ...+.    +.. ..+..+.+.+  +|+++++-                 ...+.|..||..+++..... ..
T Consensus       182 d~~~~~~~~~~~----~h~-~~v~~~~~~~~~~g~~l~sg-----------------s~Dg~v~~wd~~~~~~~~~~~~h  239 (354)
T 2pbi_B          182 DVESGQLLQSFH----GHG-ADVLCLDLAPSETGNTFVSG-----------------GCDKKAMVWDMRSGQCVQAFETH  239 (354)
T ss_dssp             ETTTCCEEEEEE----CCS-SCEEEEEECCCSSCCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCC
T ss_pred             eCCCCeEEEEEc----CCC-CCeEEEEEEeCCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEecCC
Confidence            8654   22221    111 1234566655  56655552                 34567999998877654333 33


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-CCCCCeEEECCCCCEEEEEec
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-PGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-~g~P~~i~~d~~G~lwva~~~  300 (393)
                      ....+.++++|+++.+ ++....+.|..|++...+  ....+.... ..-...++++++|++.++...
T Consensus       240 ~~~v~~v~~~p~~~~l-~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~  304 (354)
T 2pbi_B          240 ESDVNSVRYYPSGDAF-ASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYN  304 (354)
T ss_dssp             SSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEeCCCCEE-EEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence            4456889999999755 555668899999985321  122221111 111345788999997776553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.46  E-value=0.0003  Score=65.03  Aligned_cols=193  Identities=8%  Similarity=0.016  Sum_probs=110.1

Q ss_pred             cCccCCCceEEEecC-CCEEEEEecCCeEEEEEcCCCCCcc--eeeeeecCCCceeeeEECCCCCCCCceEE-EEEeCCC
Q 016199           79 YGVLKGPEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPADS--LVHNWINTGGRPLGIAFANSDPDADRITM-IVADAYK  154 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~~--~~~~~~~~~~~p~gl~~d~~G~~~~~~~L-~v~~~~~  154 (393)
                      .|-...-.+++++|+ +++|.+++.|+.|..|+........  ....+.........+++.++|      ++ +.+...+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg------~~l~s~~~d~  108 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG------QFALSGSWDG  108 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS------SEEEEEETTS
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC------CEEEEEcccc
Confidence            444445667999987 5778889999999999987643111  012222224567899999999      54 4454444


Q ss_pred             ceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          155 GLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       155 gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      .+..++... ..........   .........+++..+++-                 ...+.+..+|............
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~s~-----------------s~d~~~~~~d~~~~~~~~~~~~  168 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHT---KDVLSVAFSSDNRQIVSG-----------------SRDKTIKLWNTLGVCKYTVQDE  168 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCS---SCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTTSCEEEEECSS
T ss_pred             cceEEeecccceeeeecCCC---CceeEEEEeecCccceee-----------------cCCCeEEEEEeCCCceEEEEec
Confidence            455666544 2111111111   122345666777555442                 2345677788765443332211


Q ss_pred             --ccCCCcEEEcCCCC-EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          234 --LYFANGVVLSPDQT-HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       234 --l~~~ngi~~s~dg~-~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                        ......+++++++. .++++....+.|..|++...   +.........+....++++++|++.++...
T Consensus       169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence              23345677887754 45566667788988987532   222122122333456889999997776543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.46  E-value=0.00014  Score=74.43  Aligned_cols=190  Identities=11%  Similarity=0.063  Sum_probs=115.5

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CC----
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YK----  154 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~----  154 (393)
                      +....-.+++++|+|++|.+++.++.|..|+...+... ....+....+....++|+++|      +.+++.. ..    
T Consensus        57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg------~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSES------KRIAAVGEGRERFG  129 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTS------CEEEEEECCSSCSE
T ss_pred             CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCC------CEEEEEECCCCcee
Confidence            33344567899999998889999999999998643211 122333334567899999999      5544422 21    


Q ss_pred             ceEEEeCCc-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-Ee
Q 016199          155 GLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LV  231 (393)
Q Consensus       155 gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~  231 (393)
                      .+..++... ...    ..+. ...++.+++.|++. .+++.                 ...+.+..||..+++... +.
T Consensus       130 ~v~~wd~~~~~~~----l~gh-~~~v~~v~f~p~~~~~l~s~-----------------s~D~~v~lwd~~~~~~~~~l~  187 (611)
T 1nr0_A          130 HVFLFDTGTSNGN----LTGQ-ARAMNSVDFKPSRPFRIISG-----------------SDDNTVAIFEGPPFKFKSTFG  187 (611)
T ss_dssp             EEEETTTCCBCBC----CCCC-SSCEEEEEECSSSSCEEEEE-----------------ETTSCEEEEETTTBEEEEEEC
T ss_pred             EEEEeeCCCCcce----ecCC-CCCceEEEECCCCCeEEEEE-----------------eCCCeEEEEECCCCeEeeeec
Confidence            244455322 111    2222 13467899999985 34442                 234568888876665433 33


Q ss_pred             cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec------cCCCCCCeEEECCCCCEEEEEecC
Q 016199          232 SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE------TLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       232 ~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~------~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ......+.++++|||+. +++....+.|..|++...+  ....+..      ...+....++++++|++.++....
T Consensus       188 ~H~~~V~~v~fspdg~~-las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D  260 (611)
T 1nr0_A          188 EHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD  260 (611)
T ss_dssp             CCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccCceEEEEECCCCCE-EEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence            33455788999999974 4666678899999874221  1111211      122234568899999977766543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.46  E-value=9.6e-05  Score=69.02  Aligned_cols=166  Identities=8%  Similarity=0.040  Sum_probs=104.1

Q ss_pred             CceEEecCccCCCceEEEecC----CCEEEEEecCCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCC----CCCC
Q 016199           73 GSEKVGYGVLKGPEDLLYDAH----SKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANS----DPDA  142 (393)
Q Consensus        73 ~~~~l~~g~~~~Pe~ia~d~~----g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~----G~~~  142 (393)
                      ..+.+.++.-....+++++|+    ...++++..++.|..|+...+.....+..+..  .......+++.++    |   
T Consensus         9 ~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---   85 (366)
T 3k26_A            9 CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH---   85 (366)
T ss_dssp             EEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC---
T ss_pred             EEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC---
Confidence            334555555455667899973    34577777788999999875431111222221  2345788888887    5   


Q ss_pred             CceEEEEEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEE
Q 016199          143 DRITMIVADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLL  218 (393)
Q Consensus       143 ~~~~L~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~  218 (393)
                        ..|+++...+.|..+|.+.   ...+.    +. ...+..+.+.+ ++.++++-                 ...+.|.
T Consensus        86 --~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~-~~~i~~~~~~~~~~~~l~s~-----------------~~dg~i~  141 (366)
T 3k26_A           86 --PLLAVAGSRGIIRIINPITMQCIKHYV----GH-GNAINELKFHPRDPNLLLSV-----------------SKDHALR  141 (366)
T ss_dssp             --EEEEEEETTCEEEEECTTTCCEEEEEE----SC-CSCEEEEEECSSCTTEEEEE-----------------ETTSCEE
T ss_pred             --CEEEEecCCCEEEEEEchhceEeeeec----CC-CCcEEEEEECCCCCCEEEEE-----------------eCCCeEE
Confidence              1345554445577778654   22221    11 12366889999 78766653                 3356799


Q ss_pred             EEeCCCCeEEEEe----cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          219 SFDPVTKETKVLV----SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       219 ~~d~~t~~~~~~~----~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .||..+++.....    ........++++++++.++.+ ...+.|..|++..
T Consensus       142 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  192 (366)
T 3k26_A          142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINS  192 (366)
T ss_dssp             EEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEESCS
T ss_pred             EEEeecCeEEEEecccccccCceeEEEECCCCCEEEEe-cCCCCEEEEECCC
Confidence            9998877665544    233456789999999766554 4578999999863

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.44  E-value=0.00012  Score=70.92  Aligned_cols=238  Identities=9%  Similarity=0.028  Sum_probs=133.4

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      -.+++|+++|+.|.+|+.+|.|..|+.+++.   .+..+.........+..++.       .|..+.....+..++... 
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---~~~~~~~h~~~v~~~s~~~~-------~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---RLRNMTSHSARVGSLSWNSY-------ILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEETT-------EEEEEETTSEEEEEETTSS
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCc---EEEEEeCCCCceEEEeeCCC-------EEEEEeCCCceeEeeeccc
Confidence            3579999999999999999999999988654   13333333344556665432       455555455566666543 


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-----EEEecCccCCC
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-----KVLVSDLYFAN  238 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-----~~~~~~l~~~n  238 (393)
                      ...+. ...+. ...+..+...++|...++.                 ...+.+..++..+++.     ...........
T Consensus       220 ~~~~~-~~~~h-~~~~~~~~~~~~g~~l~s~-----------------~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~  280 (420)
T 4gga_A          220 EHHVA-TLSGH-SQEVCGLRWAPDGRHLASG-----------------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK  280 (420)
T ss_dssp             SCEEE-EEECC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred             ceeeE-Eeccc-ccceeeeeecCCCCeeeee-----------------eccccceEEeeccccccceeeeeecccCCcee
Confidence            11111 11111 1234577888888766653                 2345677777655432     22222233456


Q ss_pred             cEEEcCCCCEEEEEe--CCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchh
Q 016199          239 GVVLSPDQTHLVYCE--TSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIR  316 (393)
Q Consensus       239 gi~~s~dg~~l~v~~--~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r  316 (393)
                      .+++++++..++.+.  +..+.|..|++...   ...... ........+...++++..++..+..+             
T Consensus       281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d-------------  343 (420)
T 4gga_A          281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAV-DAHSQVCSILWSPHYKELISGHGFAQ-------------  343 (420)
T ss_dssp             EEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEE-ECSSCEEEEEEETTTTEEEEEECTTT-------------
T ss_pred             eeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceee-ccccceeeeeecCCCCeEEEEEecCC-------------
Confidence            788898877665543  44678888887532   222222 11223456777888887766543211             


Q ss_pred             hhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEE-EEeCC-EEEEEecCCCeEEEEeCCCCCC
Q 016199          317 KVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSA-IKIGD-HLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~-~~~~g-~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                                         +.|..+|. +++.+..+..... .+..+ ...+| .|.-|+ .+..|-.-|+.+..+
T Consensus       344 -------------------~~I~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s-~D~tvriWdv~~~~~  398 (420)
T 4gga_A          344 -------------------NQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAA-ADETLRLWRCFELDP  398 (420)
T ss_dssp             -------------------CCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEE-TTTEEEEECCSCSSC
T ss_pred             -------------------CEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCCc
Confidence                               34666764 6788887764432 23332 33344 455444 444565556654433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.44  E-value=0.00053  Score=64.36  Aligned_cols=190  Identities=9%  Similarity=0.034  Sum_probs=111.2

Q ss_pred             cCccCCCceEEE-----ec-CCCEEEEEecCCeEEEEEcCCCCCc----ceeeeeecCCCceeeeEECCCCCCCCceEEE
Q 016199           79 YGVLKGPEDLLY-----DA-HSKLIYTGCEDGWIKRVTLNDSPAD----SLVHNWINTGGRPLGIAFANSDPDADRITMI  148 (393)
Q Consensus        79 ~g~~~~Pe~ia~-----d~-~g~~L~~~~~~g~I~~~~~~~~~~~----~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~  148 (393)
                      .|....-.++++     .+ +++.|.+++.|+.|..|+.......    .....+.........+++.++|      .++
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~------~~l   91 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN------CFA   91 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST------TEE
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC------CEE
Confidence            343333456777     55 7888899999999999988643210    0112222233457889999988      554


Q ss_pred             E-EeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          149 V-ADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       149 v-~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      + +..++.|..+|...   ...+.    +.. ..+..+++.++|...++-                 ...+.|..||..+
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~----~h~-~~v~~v~~sp~~~~l~s~-----------------~~d~~i~~wd~~~  149 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFV----GHQ-SEVYSVAFSPDNRQILSA-----------------GAEREIKLWNILG  149 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEE----CCC-SCEEEEEECSSTTEEEEE-----------------ETTSCEEEEESSS
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEc----CCC-CcEEEEEECCCCCEEEEE-----------------cCCCEEEEEeccC
Confidence            4 44344566678654   22221    111 235688999999766653                 2345688888764


Q ss_pred             CeEEEEec---CccCCCcEEEcCCCC---------EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCC
Q 016199          225 KETKVLVS---DLYFANGVVLSPDQT---------HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG  292 (393)
Q Consensus       225 ~~~~~~~~---~l~~~ngi~~s~dg~---------~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G  292 (393)
                      ........   .......++++|+++         .++++....+.|..|+..+.   ....+. ...+....++++++|
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~-~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ---IRYTFK-AHESNVNHLSISPNG  225 (343)
T ss_dssp             CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---EEEEEE-CCSSCEEEEEECTTS
T ss_pred             CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc---eeEEEc-CccccceEEEECCCC
Confidence            43332221   123356678888762         35566667889999884321   112222 223334568899999


Q ss_pred             CEEEEEec
Q 016199          293 HYLIALAT  300 (393)
Q Consensus       293 ~lwva~~~  300 (393)
                      ++.++...
T Consensus       226 ~~l~sgs~  233 (343)
T 2xzm_R          226 KYIATGGK  233 (343)
T ss_dssp             SEEEEEET
T ss_pred             CEEEEEcC
Confidence            97765543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.43  E-value=8e-05  Score=72.05  Aligned_cols=158  Identities=7%  Similarity=-0.007  Sum_probs=98.4

Q ss_pred             CCCceEEEecCC--CEEEEEecCCeEEEEEcCCCCCcc------------------------------------eeeee-
Q 016199           83 KGPEDLLYDAHS--KLIYTGCEDGWIKRVTLNDSPADS------------------------------------LVHNW-  123 (393)
Q Consensus        83 ~~Pe~ia~d~~g--~~L~~~~~~g~I~~~~~~~~~~~~------------------------------------~~~~~-  123 (393)
                      ....++++.+++  ..|.+++.++.|..|+...+....                                    ....+ 
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            345679999997  678899999988888875422000                                    00011 


Q ss_pred             ecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEe--e----ccCCccccccccEEEcCCC-cEEEEeC
Q 016199          124 INTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLT--D----EAEGQKFKLTDGVDVADDG-MIYFTDA  195 (393)
Q Consensus       124 ~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~--~----~~~g~~~~~~~~l~~d~dG-~l~~td~  195 (393)
                      .........+++.++|      +++++...+.|..+|.+. ...+.  .    ...+. ...+..++++++| .++++- 
T Consensus       174 ~~h~~~v~~~~~~~~~------~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~-  245 (447)
T 3dw8_B          174 NAHTYHINSISINSDY------ETYLSADDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSCNTFVYS-  245 (447)
T ss_dssp             SCCSSCCCEEEECTTS------SEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCTTEEEEE-
T ss_pred             cCCCcceEEEEEcCCC------CEEEEeCCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCCcEEEEE-
Confidence            1123456789999998      655554445577778762 11111  0    11111 1346788999998 766663 


Q ss_pred             CCccchhhheehhcccCCCcEEEEEeCCCCeE-----EEEecCcc------------CCCcEEEcCCCCEEEEEeCCCCe
Q 016199          196 SNKYYLREYILDIFEGKPNGRLLSFDPVTKET-----KVLVSDLY------------FANGVVLSPDQTHLVYCETSMRR  258 (393)
Q Consensus       196 ~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-----~~~~~~l~------------~~ngi~~s~dg~~l~v~~~~~~r  258 (393)
                                      ...+.|..||..+++.     ..+.....            ....+++++||+.++.+..  +.
T Consensus       246 ----------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~  307 (447)
T 3dw8_B          246 ----------------SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LS  307 (447)
T ss_dssp             ----------------ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SE
T ss_pred             ----------------eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--Ce
Confidence                            3356788899877663     44433222            5678999999987765544  89


Q ss_pred             EEEEEecC
Q 016199          259 CRKFYIKG  266 (393)
Q Consensus       259 i~~~~~~g  266 (393)
                      |..|++..
T Consensus       308 v~iwd~~~  315 (447)
T 3dw8_B          308 VKVWDLNM  315 (447)
T ss_dssp             EEEEETTC
T ss_pred             EEEEeCCC
Confidence            99999863

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.42  E-value=3.1e-06  Score=81.50  Aligned_cols=140  Identities=6%  Similarity=-0.150  Sum_probs=92.1

Q ss_pred             CEEEEEec-CC----eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC----------CCceEEE
Q 016199           95 KLIYTGCE-DG----WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA----------YKGLLKI  159 (393)
Q Consensus        95 ~~L~~~~~-~g----~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~----------~~gl~~i  159 (393)
                      +++|+... ++    .|..+|.++.+    +......+..| +++++++|     +.+||++.          .+-|..+
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~----v~~~i~vG~~P-~i~~spDg-----~~lyVan~~~~r~~~G~~~~~Vsvi  101 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGV----TLGHSLGAFLS-LAVAGHSG-----SDFALASTSFARSAKGKRTDYVEVF  101 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTE----EEEEEEECTTC-EEEECTTS-----SCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred             CeEEEECCccCCccceEEEEECCCCe----EEEEEeCCCCC-ceEECCCC-----CEEEEEcccccccccCCCCCEEEEE
Confidence            35887765 33    78899988765    44444557789 99999998     37999974          2338889


Q ss_pred             eCCceEEEee-ccC-Cc---cccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEE--EeCCCCeEEEEe
Q 016199          160 SGNSTVLLTD-EAE-GQ---KFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLS--FDPVTKETKVLV  231 (393)
Q Consensus       160 d~~g~~~l~~-~~~-g~---~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~--~d~~t~~~~~~~  231 (393)
                      |+...++... ... +.   ....++++++++|| .+|+++..                ....+..  +|+.+  ...+.
T Consensus       102 D~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~----------------~~~~v~V~~iD~~t--v~~i~  163 (368)
T 1mda_H          102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG----------------SSAAAGLSVPGASD--DQLTK  163 (368)
T ss_dssp             CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS----------------SSCEEEEEETTTEE--EEEEE
T ss_pred             ECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC----------------CCCeEEEEEEchhh--ceEEE
Confidence            9876222221 111 11   12458899999999 79999621                1335667  88876  33332


Q ss_pred             cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          232 SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       232 ~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      .    +.++.+.++++..|++.+..+++..++++.
T Consensus       164 v----~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          164 S----ASCFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             C----SSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             C----CCceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence            1    222345678878888888888888888754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.42  E-value=0.00018  Score=79.38  Aligned_cols=186  Identities=11%  Similarity=0.068  Sum_probs=117.5

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....+++++++|+.|.+++.++.|..|+..++.   ....+.........+++.+++.   ...+..+...+.|..+|.+
T Consensus       658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~---~~~l~sg~~d~~v~vwd~~  731 (1249)
T 3sfz_A          658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGK---LVHTYDEHSEQVNCCHFTNKSN---HLLLATGSNDFFLKLWDLN  731 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECSSSS---CCEEEEEETTSCEEEEETT
T ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc---eEEEEcCCCCcEEEEEEecCCC---ceEEEEEeCCCeEEEEECC
Confidence            455679999999989899999999999988654   2344444455678899987430   0123344444557777865


Q ss_pred             c---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC------
Q 016199          163 S---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD------  233 (393)
Q Consensus       163 g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~------  233 (393)
                      .   ...+.    +. ...+..+++.++|...++.                 ...|.|..||..+++.......      
T Consensus       732 ~~~~~~~~~----~h-~~~v~~~~~sp~~~~l~s~-----------------s~dg~v~vwd~~~~~~~~~~~~~~~~~~  789 (1249)
T 3sfz_A          732 QKECRNTMF----GH-TNSVNHCRFSPDDELLASC-----------------SADGTLRLWDVRSANERKSINVKRFFLS  789 (1249)
T ss_dssp             SSSEEEEEC----CC-SSCEEEEEECSSTTEEEEE-----------------ESSSEEEEEEGGGTEEEEEEECCCCC--
T ss_pred             Ccchhheec----CC-CCCEEEEEEecCCCEEEEE-----------------ECCCeEEEEeCCCCcccceecccccccc
Confidence            4   22221    11 1236688999999766663                 3356788888766643322110      


Q ss_pred             --------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          234 --------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       234 --------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                              ......+++++||+.++++.  .+.+..|++....  ....+.....+....++++++|++.++...
T Consensus       790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  860 (1249)
T 3sfz_A          790 SEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIALS  860 (1249)
T ss_dssp             ------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCC--EEEEEECSSSSCCCEEEECSSTTEEEEECS
T ss_pred             cCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCC--ceeEEcCCCCCceEEEEEcCCCCEEEEEeC
Confidence                    11456788999998887765  5789999975321  222222222334567889999997766543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.41  E-value=9.1e-06  Score=84.41  Aligned_cols=139  Identities=14%  Similarity=0.075  Sum_probs=87.8

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC----ceeeeEECCCCCCCCceEEEEEeCC------
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG----RPLGIAFANSDPDADRITMIVADAY------  153 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~----~p~gl~~d~~G~~~~~~~L~v~~~~------  153 (393)
                      .+.+++|.+||+.++. +.+|.|+.++..+++    .........    .+..+++.+||     +.|.++...      
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~----~~~~~~~~~~~~~~v~~~~~SpDg-----~~l~~~~~~~~~~~~   87 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT----STVLIEGKKIESLRAIRYEISPDR-----EYALFSYNVEPIYQH   87 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC----CEEEECTTTTTTTTCSEEEECTTS-----SEEEEEESCCCCSSS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCc----EEEEeccccccccccceEEECCCC-----CEEEEEecCccceee
Confidence            3667889999985554 678899999988765    333322111    37889999999     235555332      


Q ss_pred             ---CceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          154 ---KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       154 ---~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                         ..++.+|.++  .+.+.. ..+. ...+..++++||| .|.++.                   .+.|+.+|..+++.
T Consensus        88 ~~~~~i~~~d~~~~~~~~l~~-~~~~-~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~g~~  146 (723)
T 1xfd_A           88 SYTGYYVLSKIPHGDPQSLDP-PEVS-NAKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQA  146 (723)
T ss_dssp             CCCSEEEEEESSSCCCEECCC-TTCC-SCCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCC
T ss_pred             cceeeEEEEECCCCceEeccC-Cccc-cccccccEECCCCCEEEEEE-------------------CCeEEEEECCCCce
Confidence               3466777655  323321 1111 1125578899999 455553                   14799999888776


Q ss_pred             EEEecCcc-------------------CCCcEEEcCCCCEEEEEe
Q 016199          228 KVLVSDLY-------------------FANGVVLSPDQTHLVYCE  253 (393)
Q Consensus       228 ~~~~~~l~-------------------~~ngi~~s~dg~~l~v~~  253 (393)
                      ..+...-.                   ...+++++|||+.|+++.
T Consensus       147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            65543311                   225799999999887765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.40  E-value=0.00034  Score=65.87  Aligned_cols=160  Identities=9%  Similarity=-0.003  Sum_probs=98.5

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+....-.+++++++|+.|.+++.|+.+..|+.+.+.. .....+.........+++.++|     +.|..+..++.|..
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~-----~~l~s~s~D~~v~i  131 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSG-----NLLATCSRDKSVWV  131 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTS-----SEEEEEETTSCEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCC-----CEEEEEECCCeEEE
Confidence            34334556799999999999999999999998775430 0122232334567899999998     13445544555666


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE---EEec
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK---VLVS  232 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~---~~~~  232 (393)
                      +|.+.   ...+. ...+. ...+..+++.++|.++++-                 ...+.|..||..+++..   .+..
T Consensus       132 wd~~~~~~~~~~~-~~~~h-~~~v~~~~~~p~~~~l~s~-----------------s~d~~i~~w~~~~~~~~~~~~~~~  192 (345)
T 3fm0_A          132 WEVDEEDEYECVS-VLNSH-TQDVKHVVWHPSQELLASA-----------------SYDDTVKLYREEEDDWVCCATLEG  192 (345)
T ss_dssp             EEECTTSCEEEEE-EECCC-CSCEEEEEECSSSSCEEEE-----------------ETTSCEEEEEEETTEEEEEEEECC
T ss_pred             EECCCCCCeEEEE-EecCc-CCCeEEEEECCCCCEEEEE-----------------eCCCcEEEEEecCCCEEEEEEecC
Confidence            66533   22221 11121 1235688999999765553                 23345667776555432   2233


Q ss_pred             CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      .......++++|||+.| ++.+..+.|..|+.
T Consensus       193 h~~~v~~l~~sp~g~~l-~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          193 HESTVWSLAFDPSGQRL-ASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CSSCEEEEEECTTSSEE-EEEETTSCEEEEEE
T ss_pred             CCCceEEEEECCCCCEE-EEEeCCCeEEEecc
Confidence            34456789999999765 45556778888775

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.40  E-value=0.0011  Score=61.24  Aligned_cols=190  Identities=12%  Similarity=0.101  Sum_probs=112.1

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .+......+++++++|+.|+++..++.|..++.....   ................+.+++     +.|+.+...+.+..
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~l~s~s~d~~~~~  154 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT---TTRRFVGHTKDVLSVAFSSDN-----RQIVSGSRDKTIKL  154 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTS-----SCEEEEETTSCEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc---eeeeecCCCCceeEEEEeecC-----ccceeecCCCeEEE
Confidence            3333556779999999999999999999999877653   112222223445667777777     13555544555666


Q ss_pred             EeCCceEEEeeccCCccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-cc
Q 016199          159 ISGNSTVLLTDEAEGQKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LY  235 (393)
Q Consensus       159 id~~g~~~l~~~~~g~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~  235 (393)
                      ++..+.........+. ...+..+.+.+++  .++++.                 ...+.|..||..+++......+ ..
T Consensus       155 ~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~-----------------~~d~~i~i~d~~~~~~~~~~~~h~~  216 (340)
T 4aow_A          155 WNTLGVCKYTVQDESH-SEWVSCVRFSPNSSNPIIVSC-----------------GWDKLVKVWNLANCKLKTNHIGHTG  216 (340)
T ss_dssp             ECTTSCEEEEECSSSC-SSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEeCCCceEEEEeccc-cCcccceEEccCCCCcEEEEE-----------------cCCCEEEEEECCCCceeeEecCCCC
Confidence            7765511111111111 1224456666654  444542                 2345688889887766544332 34


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ..+.++++||++.+ ++....+.|..|++...+  ....+.  .......+++.+++.+..+..
T Consensus       217 ~v~~~~~s~~~~~l-~s~s~Dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~  275 (340)
T 4aow_A          217 YLNTVTVSPDGSLC-ASGGKDGQAMLWDLNEGK--HLYTLD--GGDIINALCFSPNRYWLCAAT  275 (340)
T ss_dssp             CEEEEEECTTSSEE-EEEETTCEEEEEETTTTE--EEEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred             cEEEEEECCCCCEE-EEEeCCCeEEEEEeccCc--eeeeec--CCceEEeeecCCCCceeeccC
Confidence            46789999999755 455567899999985321  122221  122234567788887766654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.39  E-value=0.00011  Score=76.17  Aligned_cols=188  Identities=8%  Similarity=0.054  Sum_probs=115.8

Q ss_pred             CCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCc--ceeeeeecCCCceeeeEECCCCCCCCceEE-EEEeCCCceEE
Q 016199           83 KGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPAD--SLVHNWINTGGRPLGIAFANSDPDADRITM-IVADAYKGLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~--~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L-~v~~~~~gl~~  158 (393)
                      ..-.++++.+++ +.|.+++.|+.|..|+.......  .....+.........+++.++|      ++ ..+...+.|..
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g------~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG------QFALSGSWDGELRL  456 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS------SEEEEEETTSEEEE
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC------CEEEEEeCCCcEEE
Confidence            445567887754 57888999999999988653211  1122233334567889999998      54 44544455777


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--  233 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--  233 (393)
                      +|...   ...+.    +.. ..+.+++++++|...++.                 ...+.|..||..+.....+...  
T Consensus       457 wd~~~~~~~~~~~----~h~-~~v~~~~~s~~~~~l~s~-----------------s~D~~i~iwd~~~~~~~~~~~~~~  514 (694)
T 3dm0_A          457 WDLAAGVSTRRFV----GHT-KDVLSVAFSLDNRQIVSA-----------------SRDRTIKLWNTLGECKYTISEGGE  514 (694)
T ss_dssp             EETTTTEEEEEEE----CCS-SCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTTSCEEEEECSSTT
T ss_pred             EECCCCcceeEEe----CCC-CCEEEEEEeCCCCEEEEE-----------------eCCCEEEEEECCCCcceeeccCCC
Confidence            78654   22221    111 235688999999766653                 2345688888765444333221  


Q ss_pred             --ccCCCcEEEcCCCC-EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          234 --LYFANGVVLSPDQT-HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       234 --l~~~ngi~~s~dg~-~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                        ......+++++++. .++++.+..+.|..|++...   +.........+....++++++|++.++....
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D  582 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGHTGYVSTVAVSPDGSLCASGGKD  582 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence              22357788999873 46677777899999998543   2222222333345668899999977765543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.38  E-value=4.7e-05  Score=71.54  Aligned_cols=190  Identities=9%  Similarity=0.053  Sum_probs=110.2

Q ss_pred             CCCceEEEecC--CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCC--CCCCCceEEEEEeCCCceEE
Q 016199           83 KGPEDLLYDAH--SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANS--DPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~--g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~--G~~~~~~~L~v~~~~~gl~~  158 (393)
                      ....++++.++  ++.|++++.+|.|..|+.+++... ....+.........+++.++  |     +.++++...+.|..
T Consensus        56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-----~~l~~~~~d~~i~v  129 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYG-----PLLLVASSDGKVSV  129 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGC-----SEEEEEETTSEEEE
T ss_pred             CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCC-----CEEEEecCCCcEEE
Confidence            34456888766  888999999999999998765300 02233223456789999987  7     14566655555777


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcC-------------CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVAD-------------DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~-------------dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                      +|...   .....  ..+. ...+..+++.+             ++.++++.                 ...+.|..||.
T Consensus       130 ~d~~~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~dg~i~i~d~  189 (379)
T 3jrp_A          130 VEFKENGTTSPII--IDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTG-----------------GADNLVKIWKY  189 (379)
T ss_dssp             EECCTTSCCCEEE--EECC-TTCEEEEEECCCC----------CTTCEEEEE-----------------ETTSCEEEEEE
T ss_pred             EecCCCCceeeEE--ecCC-CCceEEEEEcCccccccccccCCCCCCEEEEE-----------------eCCCeEEEEEe
Confidence            77543   11111  1111 12356778887             57655553                 23456777776


Q ss_pred             CCCe--EE---EEecCccCCCcEEEcCCC--CEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCC
Q 016199          223 VTKE--TK---VLVSDLYFANGVVLSPDQ--THLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGH  293 (393)
Q Consensus       223 ~t~~--~~---~~~~~l~~~ngi~~s~dg--~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~  293 (393)
                      .++.  ..   .+.........++++|++  ..++++....+.|..|++..............  .......++++++|+
T Consensus       190 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  269 (379)
T 3jrp_A          190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  269 (379)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC
Confidence            5432  11   122223456789999993  24556666788999999864321111122211  223345578899998


Q ss_pred             EEEEE
Q 016199          294 YLIAL  298 (393)
Q Consensus       294 lwva~  298 (393)
                      +.++.
T Consensus       270 ~l~~~  274 (379)
T 3jrp_A          270 VLALS  274 (379)
T ss_dssp             CEEEE
T ss_pred             EEEEe
Confidence            55543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.36  E-value=7.2e-05  Score=76.86  Aligned_cols=150  Identities=9%  Similarity=0.011  Sum_probs=87.0

Q ss_pred             CCCCCCCceE-EEEEeC-CCceEEEeCC----c-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehh
Q 016199          137 NSDPDADRIT-MIVADA-YKGLLKISGN----S-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDI  208 (393)
Q Consensus       137 ~~G~~~~~~~-L~v~~~-~~gl~~id~~----g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~  208 (393)
                      +||     +. |+++.. ...|+.++.+    + ...+.............++++++||+ |+++......        .
T Consensus        88 PDg-----~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~--------~  154 (662)
T 3azo_A           88 PAG-----GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG--------E  154 (662)
T ss_dssp             SSS-----SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS--------S
T ss_pred             cCC-----CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccC--------C
Confidence            777     24 444432 3568888876    5 44443211000112345788999995 5555311000        0


Q ss_pred             cccCCCcEEEEEeCCC------CeEEEEe-cCccCCCcEEEcCCCCEEEEEeCCC-------CeEEEEEecC-CCCccee
Q 016199          209 FEGKPNGRLLSFDPVT------KETKVLV-SDLYFANGVVLSPDQTHLVYCETSM-------RRCRKFYIKG-KNAGRVE  273 (393)
Q Consensus       209 ~e~~~~g~l~~~d~~t------~~~~~~~-~~l~~~ngi~~s~dg~~l~v~~~~~-------~ri~~~~~~g-~~~~~~~  273 (393)
                      ........|+++|.++      ++.+.+. .+......++++|||+.|+++....       ..|+.+++++ .+.+...
T Consensus       155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence            0002235799999988      6776666 5445667789999999888766433       5799999863 2111333


Q ss_pred             eeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          274 KFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       274 ~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+.....+....+++++||++++...
T Consensus       235 ~l~~~~~~~~~~~~~spdg~l~~~~~  260 (662)
T 3azo_A          235 TLLGGPEEAIAQAEWAPDGSLIVATD  260 (662)
T ss_dssp             EEEEETTBCEEEEEECTTSCEEEEEC
T ss_pred             EeCCCCCceEcceEECCCCeEEEEEC
Confidence            34322233455688899999766554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.35  E-value=3.4e-05  Score=81.14  Aligned_cols=195  Identities=11%  Similarity=0.113  Sum_probs=114.3

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCC--CCCCCceEEEEEeCCCceE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANS--DPDADRITMIVADAYKGLL  157 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~--G~~~~~~~L~v~~~~~gl~  157 (393)
                      |....-.+++++++|+.|.+++.+|.|..|+..++... ....+....+...++++.++  |     +.|..+...+-|.
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~-~~~~l~~h~~~V~~l~~s~~~~~-----~~l~s~s~Dg~I~   80 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFG-----TILASCSYDGKVL   80 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-EEEEECCCSSCEEEEEECCTTSC-----SEEEEEETTSCEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-cceeccCCcCceEEEEecCCCCC-----CEEEEEeCCCeEE
Confidence            33344566889999998889999999999987643211 12233233456788999876  6     1455555455577


Q ss_pred             EEeCCc-e-EEEeeccCCccccccccEEEcCC--CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe---EEEE
Q 016199          158 KISGNS-T-VLLTDEAEGQKFKLTDGVDVADD--GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE---TKVL  230 (393)
Q Consensus       158 ~id~~g-~-~~l~~~~~g~~~~~~~~l~~d~d--G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~---~~~~  230 (393)
                      .++.++ . .... ...+. ...+..+++.++  |.++++-                 ...|.|..||..++.   ...+
T Consensus        81 vwd~~~~~~~~~~-~~~~h-~~~V~~v~~sp~~~~~~l~sg-----------------s~dg~I~vwdl~~~~~~~~~~~  141 (753)
T 3jro_A           81 IWKEENGRWSQIA-VHAVH-SASVNSVQWAPHEYGPLLLVA-----------------SSDGKVSVVEFKENGTTSPIII  141 (753)
T ss_dssp             EEEEETTEEEEEE-EECCC-SSCEEEEEECCGGGCSEEEEE-----------------ETTSEEEEEECCSSSCCCCEEE
T ss_pred             EEECCCCcccccc-cccCC-CCCeEEEEECCCCCCCEEEEE-----------------eCCCcEEEEEeecCCCcceeEe
Confidence            777544 2 1221 11111 133668899998  8666553                 345678888876652   2222


Q ss_pred             ecCccCCCcEEEcC-------------CCCEEEEEeCCCCeEEEEEecCCCCc-ceeeeeccCCCCCCeEEECCC---CC
Q 016199          231 VSDLYFANGVVLSP-------------DQTHLVYCETSMRRCRKFYIKGKNAG-RVEKFIETLPGLPDNIRYDGE---GH  293 (393)
Q Consensus       231 ~~~l~~~ngi~~s~-------------dg~~l~v~~~~~~ri~~~~~~g~~~~-~~~~~~~~l~g~P~~i~~d~~---G~  293 (393)
                      .........++++|             |++.+ ++...++.|..|++...... ..........+....++++++   |+
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCE-EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEE-EEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence            33334457788888             46544 55556888999998643211 111111122333456788888   77


Q ss_pred             EEEEEec
Q 016199          294 YLIALAT  300 (393)
Q Consensus       294 lwva~~~  300 (393)
                      +.++...
T Consensus       221 ~l~s~s~  227 (753)
T 3jro_A          221 YLASVSQ  227 (753)
T ss_dssp             EEEEEES
T ss_pred             EEEEEec
Confidence            6665543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.35  E-value=6.5e-05  Score=70.18  Aligned_cols=101  Identities=11%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             cCCCceEEEecC---CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           82 LKGPEDLLYDAH---SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        82 ~~~Pe~ia~d~~---g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      -..-.+++++++   |+.|++++.+|.|..|+.+... ......+....+....+++.++|     +.|+.+...+.|..
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~-----~~l~s~~~dg~v~i  112 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMHTGPVLDVCWSDDG-----SKVFTASCDKTAKM  112 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-CEEEEEEEECSSCEEEEEECTTS-----SEEEEEETTSEEEE
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-ceeEEEeccccCCEEEEEECcCC-----CEEEEEcCCCcEEE
Confidence            345567999998   5788899999999999987522 11113333345668899999988     24555554555777


Q ss_pred             EeCCc--eEEEeeccCCccccccccEEE--cCCCcEEEE
Q 016199          159 ISGNS--TVLLTDEAEGQKFKLTDGVDV--ADDGMIYFT  193 (393)
Q Consensus       159 id~~g--~~~l~~~~~g~~~~~~~~l~~--d~dG~l~~t  193 (393)
                      +|.+.  ...+. ...    ..+..+.+  .++|.++++
T Consensus       113 wd~~~~~~~~~~-~~~----~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A          113 WDLSSNQAIQIA-QHD----APVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             EETTTTEEEEEE-ECS----SCEEEEEEEECSSCEEEEE
T ss_pred             EEcCCCCceeec-ccc----CceEEEEEEeCCCCCEEEE
Confidence            78765  22221 111    22456677  777765444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.33  E-value=4.8e-05  Score=82.93  Aligned_cols=148  Identities=9%  Similarity=0.086  Sum_probs=94.8

Q ss_pred             CceEEEecCCCEEEEEecCCeEE-EEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIK-RVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~-~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ..+++|+ +|+.|++++.+.+++ .++.+++.    ...+......+..++++++|     +.|+++.....|+.+|.++
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~----~~~l~~~~~~~~~~~~SpDG-----~~la~~~~~~~v~~~d~~t  409 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK----AEKFEENLGNVFAMGVDRNG-----KFAVVANDRFEIMTVDLET  409 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCC----EEECCCCCCSEEEEEECTTS-----SEEEEEETTSEEEEEETTT
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCC----ceEecCCccceeeeEECCCC-----CEEEEECCCCeEEEEECCC
Confidence            3457788 887777766677888 88887665    44443333567899999999     2466665566788899765


Q ss_pred             --eEEEeeccCCccccccccEEEcCCCcEE-EEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDGMIY-FTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV  240 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~-~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi  240 (393)
                        ...+.....    ..+.+++++|||+.+ ++.....+.        ........|+.+|..+++...+.........+
T Consensus       410 g~~~~~~~~~~----~~v~~~~~SpDG~~la~~~~~~~~~--------~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~  477 (1045)
T 1k32_A          410 GKPTVIERSRE----AMITDFTISDNSRFIAYGFPLKHGE--------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAP  477 (1045)
T ss_dssp             CCEEEEEECSS----SCCCCEEECTTSCEEEEEEEECSST--------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEE
T ss_pred             CceEEeccCCC----CCccceEECCCCCeEEEEecCcccc--------ccCCCCCeEEEEECCCCcEEEeeCCCcccCCc
Confidence              333321111    234688999999643 432100000        00012357999999888866655555556778


Q ss_pred             EEcCCCCEEEEEeC
Q 016199          241 VLSPDQTHLVYCET  254 (393)
Q Consensus       241 ~~s~dg~~l~v~~~  254 (393)
                      ++++||+.+++...
T Consensus       478 ~~spdG~~l~~~s~  491 (1045)
T 1k32_A          478 AFDADSKNLYYLSY  491 (1045)
T ss_dssp             EECTTSCEEEEEES
T ss_pred             eEcCCCCEEEEEec
Confidence            99999998887764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.33  E-value=2.9e-05  Score=73.53  Aligned_cols=196  Identities=8%  Similarity=-0.039  Sum_probs=108.3

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....+++++++++.|.+++.++.|..|+..++........+.........+++.++|     +.|+.+...+.|..++.+
T Consensus        56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~  130 (377)
T 3dwl_C           56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-----DKFAVGSGARVISVCYFE  130 (377)
T ss_dssp             SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-----SCCEEEESSSCEEECCC-
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-----CEEEEEecCCeEEEEEEC
Confidence            345678999999988899999999999887542000122222334567899999988     135555545556666764


Q ss_pred             ceEE--EeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe--------------
Q 016199          163 STVL--LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE--------------  226 (393)
Q Consensus       163 g~~~--l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~--------------  226 (393)
                      ..+.  +.....+.....+..+++.++|.++++-                 ...+.|..||..++.              
T Consensus       131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  193 (377)
T 3dwl_C          131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG-----------------CADRKAYVLSAYVRDVDAKPEASVWGSRL  193 (377)
T ss_dssp             ----CCCCEEECSSCCSCEEEEEECTTSSEEEEE-----------------ESSSCEEEEEECCSSCC-CCCSCSSCSCC
T ss_pred             CcccceeeeEeecccCCCeEEEEEcCCCCEEEEE-----------------eCCCEEEEEEEEecccCCCcccccccccc
Confidence            4110  1111122112346789999999766553                 223457777753211              


Q ss_pred             -EEEE---ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc--eeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          227 -TKVL---VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR--VEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       227 -~~~~---~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~--~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                       ....   .........++++||++.++. ....+.|..|++...+...  ...+. ...+....++++++|++.++...
T Consensus       194 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~  271 (377)
T 3dwl_C          194 PFNTVCAEYPSGGWVHAVGFSPSGNALAY-AGHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYN  271 (377)
T ss_dssp             CEEEEEECCCCSSSEEEEEECTTSSCEEE-EETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESS
T ss_pred             chhhhhhcccCCceEEEEEECCCCCEEEE-EeCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcC
Confidence             1111   122234578899999976554 4567899999986432100  11121 22223456788888987766654


Q ss_pred             Cc
Q 016199          301 EF  302 (393)
Q Consensus       301 ~r  302 (393)
                      .+
T Consensus       272 ~~  273 (377)
T 3dwl_C          272 YS  273 (377)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.31  E-value=7.2e-05  Score=72.86  Aligned_cols=193  Identities=10%  Similarity=0.087  Sum_probs=119.9

Q ss_pred             CCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCc-ce---eeeeecCCCceeeeEECC-CCCCCCceEEE-EEeCCCc
Q 016199           83 KGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPAD-SL---VHNWINTGGRPLGIAFAN-SDPDADRITMI-VADAYKG  155 (393)
Q Consensus        83 ~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~-~~---~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~-v~~~~~g  155 (393)
                      ....+++++++++ .|.+++.+|.|..|+....... ..   ...+.........+++.+ ++      .++ .+...+.
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~------~~l~s~~~dg~  255 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE------SLFGSVADDQK  255 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT------TEEEEEETTSE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC------CEEEEEeCCCe
Confidence            4567899999887 8889999999999998763211 00   122222345678999998 44      454 4444555


Q ss_pred             eEEEeCCc-e--EEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC--eEEE
Q 016199          156 LLKISGNS-T--VLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK--ETKV  229 (393)
Q Consensus       156 l~~id~~g-~--~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~--~~~~  229 (393)
                      |..+|... .  ..+. ..... ...++.+++.++|. ++++.                 ...+.|..||..+.  .+..
T Consensus       256 i~i~d~~~~~~~~~~~-~~~~~-~~~v~~i~~~p~~~~~l~tg-----------------~~dg~v~vwd~~~~~~~~~~  316 (430)
T 2xyi_A          256 LMIWDTRNNNTSKPSH-TVDAH-TAEVNCLSFNPYSEFILATG-----------------SADKTVALWDLRNLKLKLHS  316 (430)
T ss_dssp             EEEEETTCSCSSSCSE-EEECC-SSCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEETTCTTSCSEE
T ss_pred             EEEEECCCCCCCccee-EeecC-CCCeEEEEeCCCCCCEEEEE-----------------eCCCeEEEEeCCCCCCCeEE
Confidence            77777542 1  1111 01111 12367889999884 66653                 33567888887652  2344


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc---------eee-e-eccCCCCCCeEEECCCCC-EEEE
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR---------VEK-F-IETLPGLPDNIRYDGEGH-YLIA  297 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~---------~~~-~-~~~l~g~P~~i~~d~~G~-lwva  297 (393)
                      +.........++++|+++.++++....++|..|++.......         .+. + .......+..++++++|. +.++
T Consensus       317 ~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  396 (430)
T 2xyi_A          317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS  396 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred             eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence            444445578899999998888888889999999986421100         011 1 112233467788999998 6655


Q ss_pred             Eec
Q 016199          298 LAT  300 (393)
Q Consensus       298 ~~~  300 (393)
                      ...
T Consensus       397 ~s~  399 (430)
T 2xyi_A          397 VSE  399 (430)
T ss_dssp             EET
T ss_pred             EEC
Confidence            543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.31  E-value=0.00016  Score=67.27  Aligned_cols=185  Identities=12%  Similarity=0.082  Sum_probs=105.8

Q ss_pred             cCccCCCceEEEecCCCEEE-EEec---CCeEEEEEcCCCCCcceeeee--ecCCCceeeeEECCC---CCCCCceEEEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIY-TGCE---DGWIKRVTLNDSPADSLVHNW--INTGGRPLGIAFANS---DPDADRITMIV  149 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~-~~~~---~g~I~~~~~~~~~~~~~~~~~--~~~~~~p~gl~~d~~---G~~~~~~~L~v  149 (393)
                      .+.-....++++.++++.+. +++.   ++.|..|+.+++.    ....  .........+++.++   |     +.|+.
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~-----~~l~~   85 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----LKLLREIEKAKPIKCGTFGATSLQQ-----RYLAT   85 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----EEEEEEEEESSCEEEEECTTCCTTT-----CCEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----ccceeeecccCcEEEEEEcCCCCCC-----ceEEE
Confidence            44335567799999986554 4544   7889999988765    3222  122456788999987   5     15666


Q ss_pred             EeCCCceEEEeCCc-e---EEEeeccCCccccccccE------EEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEE
Q 016199          150 ADAYKGLLKISGNS-T---VLLTDEAEGQKFKLTDGV------DVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLS  219 (393)
Q Consensus       150 ~~~~~gl~~id~~g-~---~~l~~~~~g~~~~~~~~l------~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~  219 (393)
                      +...+.|..++.+. .   ..+.    +.. ..+..+      ++.++|.++++.                 ...+.|..
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~----~~~-~~v~~~~~~~~~~~s~~~~~l~~~-----------------~~d~~i~v  143 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVK----GHK-EIINAIDGIGGLGIGEGAPEIVTG-----------------SRDGTVKV  143 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEEC----CCS-SCEEEEEEESGGGCC-CCCEEEEE-----------------ETTSCEEE
T ss_pred             ecCCCeEEEEeCCCCCccEEEEE----ecc-cceEEEeeccccccCCCccEEEEE-----------------eCCCeEEE
Confidence            65556677777654 2   2221    111 113344      456788666653                 23467888


Q ss_pred             EeCCCCe--EEEEecCc----cCCCcEE----EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC
Q 016199          220 FDPVTKE--TKVLVSDL----YFANGVV----LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD  289 (393)
Q Consensus       220 ~d~~t~~--~~~~~~~l----~~~ngi~----~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d  289 (393)
                      ||..+++  ...+....    .....++    ++++++.++. ....+.|..|++...+   ..... ........++++
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~---~~~~~-~~~~~v~~~~~~  218 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA-GYDNGDIKLFDLRNMA---LRWET-NIKNGVCSLEFD  218 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE-EETTSEEEEEETTTTE---EEEEE-ECSSCEEEEEES
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE-EccCCeEEEEECccCc---eeeec-CCCCceEEEEcC
Confidence            8887654  33332211    1234445    6788876554 4557899999986432   22121 233345678888


Q ss_pred             C---CCCEEEEEe
Q 016199          290 G---EGHYLIALA  299 (393)
Q Consensus       290 ~---~G~lwva~~  299 (393)
                      +   +|++.++..
T Consensus       219 ~~~~~~~~l~~~~  231 (357)
T 3i2n_A          219 RKDISMNKLVATS  231 (357)
T ss_dssp             CSSSSCCEEEEEE
T ss_pred             CCCCCCCEEEEEC
Confidence            8   787665544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.30  E-value=3.5e-05  Score=84.01  Aligned_cols=175  Identities=6%  Similarity=-0.026  Sum_probs=109.7

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-----------CCCceeeeEEC-CCCCCCCceEEEEEeCC
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-----------TGGRPLGIAFA-NSDPDADRITMIVADAY  153 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-----------~~~~p~gl~~d-~~G~~~~~~~L~v~~~~  153 (393)
                      ..++++++|+.|.++ .++.|+.++.+...    +..+..           ....+..++++ ++|     +.|.++. .
T Consensus       248 ~~~~~SpDG~~la~~-~~~~i~~~d~~~~~----l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-----~~la~~~-~  316 (1045)
T 1k32_A          248 YPRHLNTDGRRILFS-KGGSIYIFNPDTEK----IEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-----DLIAFVS-R  316 (1045)
T ss_dssp             CEEEEEESSSCEEEE-ETTEEEEECTTTCC----EEECCCCCCCBCCSEEEECGGGGEEEEEECGG-----GCEEEEE-T
T ss_pred             ceeeEcCCCCEEEEE-eCCEEEEecCCceE----eeeeccCcccccccccccccccceeeecCCCC-----CEEEEEE-c
Confidence            457899999856554 57889999875433    332211           11246789999 999     1354443 5


Q ss_pred             CceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEE-EEeCCCCeEEE
Q 016199          154 KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLL-SFDPVTKETKV  229 (393)
Q Consensus       154 ~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~-~~d~~t~~~~~  229 (393)
                      ..++.++.++  ...+. ...+   ..+..+++. || .++++.                  ...+++ .+|..+++...
T Consensus       317 ~~i~~~~~~~~~~~~~~-~~~~---~~~~~~~~s-dg~~l~~~s------------------~~~~l~~~~d~~~~~~~~  373 (1045)
T 1k32_A          317 GQAFIQDVSGTYVLKVP-EPLR---IRYVRRGGD-TKVAFIHGT------------------REGDFLGIYDYRTGKAEK  373 (1045)
T ss_dssp             TEEEEECTTSSBEEECS-CCSC---EEEEEECSS-SEEEEEEEE------------------TTEEEEEEEETTTCCEEE
T ss_pred             CEEEEEcCCCCceEEcc-CCCc---ceEEeeeEc-CCCeEEEEE------------------CCCceEEEEECCCCCceE
Confidence            5688887655  22221 1111   124466777 77 455542                  135799 89988887766


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEE
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~  298 (393)
                      +.........++++|||+.++++. ..+.|+.+++++.   +.........+....+++++||++.+..
T Consensus       374 l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg---~~~~~~~~~~~~v~~~~~SpDG~~la~~  438 (1045)
T 1k32_A          374 FEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETG---KPTVIERSREAMITDFTISDNSRFIAYG  438 (1045)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTC---CEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             ecCCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCC---ceEEeccCCCCCccceEECCCCCeEEEE
Confidence            653335567899999999887765 4679999998532   3333332333444679999999965443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.30  E-value=0.00085  Score=65.35  Aligned_cols=177  Identities=10%  Similarity=0.054  Sum_probs=102.3

Q ss_pred             ecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeec
Q 016199           91 DAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDE  170 (393)
Q Consensus        91 d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~  170 (393)
                      ..+++.|.+++.+|.|..|+..++.   ....+....+....+++.+++      .+..+...+.|..+|.+..+.+. .
T Consensus       129 ~~~~~~l~sgs~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~------~l~s~s~dg~i~vwd~~~~~~~~-~  198 (464)
T 3v7d_B          129 QFEDNYVITGADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG------ILVSGSTDRTVRVWDIKKGCCTH-V  198 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSTT------EEEEEETTSCEEEEETTTTEEEE-E
T ss_pred             EECCCEEEEEcCCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcCCC------EEEEEeCCCCEEEEECCCCcEEE-E
Confidence            3345689999999999999987654   133333345667899999888      88888777778888875411111 1


Q ss_pred             cCCccccccccEEEc--CCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-------------------
Q 016199          171 AEGQKFKLTDGVDVA--DDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-------------------  229 (393)
Q Consensus       171 ~~g~~~~~~~~l~~d--~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-------------------  229 (393)
                      ..+. ...+..+++.  +++.+.++.                 ...+.|..||..++....                   
T Consensus       199 ~~~h-~~~v~~l~~~~~~~~~~l~s~-----------------s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          199 FEGH-NSTVRCLDIVEYKNIKYIVTG-----------------SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             ECCC-SSCEEEEEEEESSSCEEEEEE-----------------ETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             ECCC-CCccEEEEEecCCCCCEEEEE-----------------cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            1111 1224456665  466555542                 234567777765543111                   


Q ss_pred             ----EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          230 ----LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       230 ----~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                          ... .....-.+++++++.++. ....+.|..|++...+  ....+. ........++++++|++.++...
T Consensus       261 ~~~~~~~-~~~~~v~~~~~~~~~l~~-~~~d~~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~  330 (464)
T 3v7d_B          261 YFVGVLR-GHMASVRTVSGHGNIVVS-GSYDNTLIVWDVAQMK--CLYILS-GHTDRIYSTIYDHERKRCISASM  330 (464)
T ss_dssp             TEEEEEC-CCSSCEEEEEEETTEEEE-EETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEcc-CccceEEEEcCCCCEEEE-EeCCCeEEEEECCCCc--EEEEec-CCCCCEEEEEEcCCCCEEEEEeC
Confidence                011 112233456778866554 4567889999985321  122221 22233456788999987665543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.29  E-value=0.0013  Score=64.08  Aligned_cols=240  Identities=11%  Similarity=0.094  Sum_probs=134.7

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC--CCCCCCCceEEEEEeCCCceE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA--NSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d--~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      +.-....++++.+++ .+.+++.+|.|..|+.+++.   ....+.........+++.  +++     +.++.+...+.|.
T Consensus       160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~-----~~l~s~s~d~~i~  230 (464)
T 3v7d_B          160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC---CTHVFEGHNSTVRCLDIVEYKNI-----KYIVTGSRDNTLH  230 (464)
T ss_dssp             CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEEESSSC-----EEEEEEETTSCEE
T ss_pred             CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc---EEEEECCCCCccEEEEEecCCCC-----CEEEEEcCCCcEE
Confidence            333456678898887 78899999999999988654   133333334556777776  466     1355555455566


Q ss_pred             EEeCCc---eEEEee-------------------ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCc
Q 016199          158 KISGNS---TVLLTD-------------------EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNG  215 (393)
Q Consensus       158 ~id~~g---~~~l~~-------------------~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g  215 (393)
                      .++...   ......                   ...+.. ..+  ..+.+++.+.++-                 ...+
T Consensus       231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~~~-----------------~~d~  290 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM-ASV--RTVSGHGNIVVSG-----------------SYDN  290 (464)
T ss_dssp             EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS-SCE--EEEEEETTEEEEE-----------------ETTS
T ss_pred             EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc-ceE--EEEcCCCCEEEEE-----------------eCCC
Confidence            677543   111000                   000100 011  1234555544442                 3456


Q ss_pred             EEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCE
Q 016199          216 RLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHY  294 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~l  294 (393)
                      .|..||..+++...... .......++++++++.++. .+..+.|..|++...+  ....+. ........++++  +++
T Consensus       291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~--~~~~~~-~h~~~v~~~~~~--~~~  364 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIWDLENGE--LMYTLQ-GHTALVGLLRLS--DKF  364 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE-EETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEC--SSE
T ss_pred             eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCc--EEEEEe-CCCCcEEEEEEc--CCE
Confidence            79999988776544333 3345678899999976654 5567889999985321  112221 222233446665  555


Q ss_pred             EEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEEEeCCEEEEEe
Q 016199          295 LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIKIGDHLYCGS  373 (393)
Q Consensus       295 wva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~~~g~Lyigs  373 (393)
                      .++....                                  +.|..+|.+ ++....++............++..|..|+
T Consensus       365 l~s~s~d----------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          365 LVSAAAD----------------------------------GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEEETT----------------------------------SEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred             EEEEeCC----------------------------------CcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec
Confidence            5554433                                  346666653 44454554433333344455556666665


Q ss_pred             cCCCeEEEEeCCCCCCC
Q 016199          374 VHHRGILHLDVNQHPAR  390 (393)
Q Consensus       374 ~~~~~i~~~~~~~~~~~  390 (393)
                        ...|..+++.....+
T Consensus       411 --dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          411 --ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             --TTEEEEEETTTCCEE
T ss_pred             --CCeEEEEECCCCcEE
Confidence              668888888766554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.29  E-value=0.00021  Score=69.21  Aligned_cols=164  Identities=13%  Similarity=0.077  Sum_probs=97.8

Q ss_pred             cCccCCCceEEEec-CCCEEEEEecCCeEEEEEcCC---CCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC
Q 016199           79 YGVLKGPEDLLYDA-HSKLIYTGCEDGWIKRVTLND---SPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK  154 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~  154 (393)
                      ++......++++++ +++.|.+++.||.|..|+..+   +........+. .......+++.+++     +.|+.+...+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~-----~~l~s~s~dg  133 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNF-----DAFAVSSKDG  133 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTS-----SEEEEEETTS
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCCC-----CEEEEEeCCC
Confidence            44335567899999 998898999999999999865   21000012222 34668899999988     1455554444


Q ss_pred             ceEEEeC----Cc--eEEEeec----cCCc---cccccccEE--EcCCCcEEEEeCCCccchhhheehhcccCCCcEEEE
Q 016199          155 GLLKISG----NS--TVLLTDE----AEGQ---KFKLTDGVD--VADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLS  219 (393)
Q Consensus       155 gl~~id~----~g--~~~l~~~----~~g~---~~~~~~~l~--~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~  219 (393)
                      .|..++.    .+  ...+...    ..-.   ....+..+.  ..+++.++++-                 ...+.|..
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~d~~i~i  196 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL-----------------TNLSRVII  196 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE-----------------ETTSEEEE
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE-----------------eCCCeEEE
Confidence            4555554    23  1111100    0000   001122333  44667555542                 34578999


Q ss_pred             EeCCCCeEEEEec---CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          220 FDPVTKETKVLVS---DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       220 ~d~~t~~~~~~~~---~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ||..+++......   .......++++++++.++ +.+..+.|..|++..
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          197 FDIRTLERLQIIENSPRHGAVSSICIDEECCVLI-LGTTRGIIDIWDIRF  245 (437)
T ss_dssp             EETTTCCEEEEEECCGGGCCEEEEEECTTSCEEE-EEETTSCEEEEETTT
T ss_pred             EeCCCCeeeEEEccCCCCCceEEEEECCCCCEEE-EEcCCCeEEEEEcCC
Confidence            9998776544332   245678899999997654 455678899999853

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.28  E-value=5.8e-05  Score=72.90  Aligned_cols=176  Identities=10%  Similarity=-0.013  Sum_probs=100.0

Q ss_pred             EecCCCEEEEEecCCeEEEEEcCC--CCCcceeeeee--cCCCceeeeEECC--CCCCCCceEEEEEeCCC----ceEEE
Q 016199           90 YDAHSKLIYTGCEDGWIKRVTLND--SPADSLVHNWI--NTGGRPLGIAFAN--SDPDADRITMIVADAYK----GLLKI  159 (393)
Q Consensus        90 ~d~~g~~L~~~~~~g~I~~~~~~~--~~~~~~~~~~~--~~~~~p~gl~~d~--~G~~~~~~~L~v~~~~~----gl~~i  159 (393)
                      .|.++ .||+++..| +++++.++  ..    ++...  ........|++|+  ++      .||++...+    +|++.
T Consensus        19 ~d~~g-~l~vgt~~G-l~~~~~~~~g~~----W~~~~~~~~~~~v~~i~~dp~~~~------~l~~g~~~g~~g~gl~~s   86 (394)
T 3b7f_A           19 ESGPV-MLLVATIKG-AWFLASDPARRT----WELRGPVFLGHTIHHIVQDPREPE------RMLMAARTGHLGPTVFRS   86 (394)
T ss_dssp             CCSCC-EEEEEETTE-EEEEEECTTSCS----EEEEEEESTTSEEEEEEECSSSTT------CEEEEEEC--CCEEEEEE
T ss_pred             CCCCC-EEEEEecCc-eEEEECCCCCCC----ceECCccCCCCceEEEEECCCCCC------eEEEEecCCCCCccEEEe
Confidence            34455 699999765 88887654  33    54431  2234678999998  67      899997655    78887


Q ss_pred             eCCc--eEEEeec--cCCc-------cccccccEEEcC---CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC
Q 016199          160 SGNS--TVLLTDE--AEGQ-------KFKLTDGVDVAD---DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK  225 (393)
Q Consensus       160 d~~g--~~~l~~~--~~g~-------~~~~~~~l~~d~---dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~  225 (393)
                      +..|  -+.+...  ....       ....+..|++++   ++.+|++.                  ..++|++.+-.+.
T Consensus        87 ~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~------------------~~ggl~~S~DgG~  148 (394)
T 3b7f_A           87 DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT------------------SPQGLFRSTDHGA  148 (394)
T ss_dssp             SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE------------------ETTEEEEESSTTS
T ss_pred             CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe------------------cCCcEEEEcCCCC
Confidence            6555  2332211  1111       112345678885   57899973                  2457999976655


Q ss_pred             eEEEEecCc-------------------cCCCcEEEcCC-CCEEEEEeCCCCeEEEEEecCCCCcceeeeecc-----CC
Q 016199          226 ETKVLVSDL-------------------YFANGVVLSPD-QTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET-----LP  280 (393)
Q Consensus       226 ~~~~~~~~l-------------------~~~ngi~~s~d-g~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-----l~  280 (393)
                      ..+.+....                   .....|++++. .+.+|+... .+.|++.+-.|+.   .+.+...     +|
T Consensus       149 tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~t---W~~~~~~~~~~~~p  224 (394)
T 3b7f_A          149 SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGTD---WKPLNRGCAANFLP  224 (394)
T ss_dssp             BCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTSS---CEECCTTCCCTTSS
T ss_pred             CeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCCC---ceECCCCccccccC
Confidence            655542110                   11235777763 446777653 3567776533321   1112111     11


Q ss_pred             ------C-CCCeEEECCC--CCEEEEEe
Q 016199          281 ------G-LPDNIRYDGE--GHYLIALA  299 (393)
Q Consensus       281 ------g-~P~~i~~d~~--G~lwva~~  299 (393)
                            + ....|+++++  +.+|++..
T Consensus       225 ~~~~~~g~~~~~i~~~~~~~~~l~vg~~  252 (394)
T 3b7f_A          225 DPNVEFGHDPHCVVQHPAAPDILYQQNH  252 (394)
T ss_dssp             SSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred             CCccccCcceeEEEECCCCCCEEEEEcC
Confidence                  0 1234677876  77999865

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.27  E-value=5.9e-05  Score=71.64  Aligned_cols=197  Identities=15%  Similarity=0.146  Sum_probs=101.5

Q ss_pred             CceEEEecCCCEEEEEe-cC--CeEEEEEcCCCCCcceeeeeecCCCcee-eeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199           85 PEDLLYDAHSKLIYTGC-ED--GWIKRVTLNDSPADSLVHNWINTGGRPL-GIAFANSDPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~-~~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~-gl~~d~~G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      +.+++++|||+.|++.. .+  ..|+.++.+++.    ...+........ ++.+.++|     +.|+++.....|+.++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~spdg-----~~l~~~~~~~~l~~~d  108 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ----AVQLTEGKGDNTFGGFISTDE-----RAFFYVKNELNLMKVD  108 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE----EEECCCSSCBCTTTCEECTTS-----SEEEEEETTTEEEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc----EEEeecCCCCccccceECCCC-----CEEEEEEcCCcEEEEE
Confidence            45678999999765443 33  378888987764    444332222222 37788998     2565655556699998


Q ss_pred             CCc--eEEEeeccCCccccccc--cEEEcCCC---cEEEEeCCCccch-hhhee--hhcccCCCcEEEEEeCCCCeEEEE
Q 016199          161 GNS--TVLLTDEAEGQKFKLTD--GVDVADDG---MIYFTDASNKYYL-REYIL--DIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       161 ~~g--~~~l~~~~~g~~~~~~~--~l~~d~dG---~l~~td~~~~~~~-~~~~~--~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                      .++  ...+.....+  . .+.  .|++....   .++....  .+.. .+++.  ..........|+.+|..+++.+.+
T Consensus       109 ~~~~~~~~~~~~~~~--~-~~~g~~l~~~~~~~~~~~~~~~~--~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          109 LETLEEQVIYTVDEE--W-KGYGTWVANSDCTKLVGIEILKR--DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             TTTCCEEEEEECCTT--E-EEEEEEEECTTSSEEEEEEEEGG--GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred             CCCCCcEEEEecccc--c-CCCCCEEEeccCCcccccccccc--ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence            765  3333221111  0 000  01111000   0000000  0000 00000  000113456799999988887766


Q ss_pred             ecCccCCCcEEEcC-CCCEEEEEeCCC-----CeEEEEEecCCCCcceeeeeccCCC-CCCeEEECCCCC-EEEEE
Q 016199          231 VSDLYFANGVVLSP-DQTHLVYCETSM-----RRCRKFYIKGKNAGRVEKFIETLPG-LPDNIRYDGEGH-YLIAL  298 (393)
Q Consensus       231 ~~~l~~~ngi~~s~-dg~~l~v~~~~~-----~ri~~~~~~g~~~~~~~~~~~~l~g-~P~~i~~d~~G~-lwva~  298 (393)
                      .........++++| |++.++++....     .+|+.+++++.+   ...+....++ .+..++++++|+ ++++.
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIPDGSAMAYVS  256 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECCCCCEEEEEe
Confidence            65445567788999 787665554322     479999986432   2222211111 234468899998 44443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.27  E-value=0.00023  Score=74.14  Aligned_cols=244  Identities=12%  Similarity=0.112  Sum_probs=131.9

Q ss_pred             eEEEecCCCEEEEEec-CC----eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc------
Q 016199           87 DLLYDAHSKLIYTGCE-DG----WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG------  155 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~-~g----~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g------  155 (393)
                      +++++|||+.|.++.. +|    .|+.++.+++.    ............++++.+||     +.|+++.....      
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~----~~~~~~~~~~~~~~~wspDg-----~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK----ELPDVLERVKFSCMAWTHDG-----KGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE----EEEEEEEEECSCCEEECTTS-----SEEEEEECCCCSSCCSS
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC----CCcccccCcccceEEEEeCC-----CEEEEEEECCccccccc
Confidence            5789999997655443 44    79999988765    33221111224678999998     25766654333      


Q ss_pred             ----------eEEEeCCc-e--EEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199          156 ----------LLKISGNS-T--VLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFD  221 (393)
Q Consensus       156 ----------l~~id~~g-~--~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d  221 (393)
                                |++++..+ .  ..+.......+ .+..++.+++||. |+++....             ......|+.+|
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d  265 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP-KWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCD  265 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT-TCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEE
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCC-eEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEE
Confidence                      77777654 1  12221111111 2234778999995 55543110             01145789998


Q ss_pred             CCC------C--eEEEEecCccCCCcEEEcCCCCEEEEEeCC---CCeEEEEEecCCCCcceeeeeccCC-CCCCeEEEC
Q 016199          222 PVT------K--ETKVLVSDLYFANGVVLSPDQTHLVYCETS---MRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYD  289 (393)
Q Consensus       222 ~~t------~--~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~---~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d  289 (393)
                      ..+      +  ..+.+...... ..-.+++||+.+|+....   +.+|+++++++......+.+....+ ....+++..
T Consensus       266 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~  344 (710)
T 2xdw_A          266 LQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV  344 (710)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred             CcccccccCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence            765      4  45555443222 223578999988887653   3489999986432112233332222 123345665


Q ss_pred             CCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEE--EeC
Q 016199          290 GEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAI--KIG  366 (393)
Q Consensus       290 ~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~--~~~  366 (393)
                      +++.+++.......                                ..|..++. +|+.+..+..+. ..+..+.  +++
T Consensus       345 ~~~~lv~~~~~~g~--------------------------------~~l~~~~~~~g~~~~~l~~~~-~~v~~~~~s~d~  391 (710)
T 2xdw_A          345 RSNFLVLCYLHDVK--------------------------------NTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKD  391 (710)
T ss_dssp             TTTEEEEEEEETTE--------------------------------EEEEEEETTTCCEEEEECCCS-SEEEEEECCTTC
T ss_pred             cCCEEEEEEEECCE--------------------------------EEEEEEECCCCCEEEecCCCC-ceEEEEecCCCC
Confidence            55666655442210                                23677776 677666665442 2222222  133


Q ss_pred             CEEEEE--ecCC-CeEEEEeCCCC
Q 016199          367 DHLYCG--SVHH-RGILHLDVNQH  387 (393)
Q Consensus       367 g~Lyig--s~~~-~~i~~~~~~~~  387 (393)
                      +.|+++  +... ..|..+|+...
T Consensus       392 ~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          392 TEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             SEEEEEEECSSCCCEEEEEETTSS
T ss_pred             CEEEEEEeCCCCCCEEEEEECCCC
Confidence            466655  3332 46777887543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.25  E-value=0.0013  Score=60.41  Aligned_cols=191  Identities=10%  Similarity=0.093  Sum_probs=107.3

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC--CCCCCCceEEEEEeCCCceEEEeC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN--SDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~--~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      .-.+++++++|+.|.+++.|+.|..|+.++.... ....+....+....+++.+  +|     +.|..+..++.|..+|.
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~~~~l~gH~~~V~~v~~s~~~~g-----~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFG-----TILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-CCEEECCCSSCEEEEEECCGGGC-----SEEEEEETTTEEEEEEB
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-EEEEEccccCCeEEEEecCCCcC-----CEEEEEcCCCEEEEEEc
Confidence            3456899999999999999999999998653211 1333333345678899864  36     13445544445666676


Q ss_pred             Cc--eEEEeeccCCccccccccEEEcCC--CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe---EEEEecCc
Q 016199          162 NS--TVLLTDEAEGQKFKLTDGVDVADD--GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE---TKVLVSDL  234 (393)
Q Consensus       162 ~g--~~~l~~~~~g~~~~~~~~l~~d~d--G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~---~~~~~~~l  234 (393)
                      +.  ...+. ...+. ...+..+++.++  |.++++-                 ...+.|..||..++.   ...+....
T Consensus        85 ~~~~~~~~~-~~~~h-~~~v~~v~~~p~~~g~~l~s~-----------------s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           85 ENGRWSQIA-VHAVH-SASVNSVQWAPHEYGPMLLVA-----------------SSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             SSSCBCCCE-EECCC-SSCEEEEEECCGGGCSEEEEE-----------------ETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             CCCceEEEE-EeecC-CCceeEEEeCcCCCCcEEEEE-----------------ECCCcEEEEEecCCCceeeeeeeccc
Confidence            43  11111 11111 123668888886  6655542                 234567777765442   22222233


Q ss_pred             cCCCcEEEcCCC------------CEEEEEeCCCCeEEEEEecCCCCc-ceeeeeccCCCCCCeEEECCCC---CEEEEE
Q 016199          235 YFANGVVLSPDQ------------THLVYCETSMRRCRKFYIKGKNAG-RVEKFIETLPGLPDNIRYDGEG---HYLIAL  298 (393)
Q Consensus       235 ~~~ngi~~s~dg------------~~l~v~~~~~~ri~~~~~~g~~~~-~~~~~~~~l~g~P~~i~~d~~G---~lwva~  298 (393)
                      ...+.++++|++            ..++++....+.|..|++...+.. ..........+....+++++++   ++.++.
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence            345678888863            135666667888999988642211 0111111222234567888885   444444


Q ss_pred             e
Q 016199          299 A  299 (393)
Q Consensus       299 ~  299 (393)
                      .
T Consensus       226 s  226 (297)
T 2pm7_B          226 S  226 (297)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.23  E-value=0.0002  Score=76.85  Aligned_cols=183  Identities=13%  Similarity=0.104  Sum_probs=116.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....+++|+++|++|.+|+.+|.|..|+..+..    .............++|.+ |     +.|..+..++.|..+|.+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~----~~~~~~~~~~V~~l~fsp-g-----~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE----VVIKLEDRSAIKEMRFVK-G-----IYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCE----EEEECSSCCCEEEEEEET-T-----TEEEEEETTCEEEEEETT
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE----EEEEcCCCCCEEEEEEcC-C-----CEEEEEECcCeEEEEECC
Confidence            456789999999989999999999999876543    222222234578999998 7     136666556667778875


Q ss_pred             c---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe--------
Q 016199          163 S---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV--------  231 (393)
Q Consensus       163 g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~--------  231 (393)
                      .   ...+.  ..    ..+..++++++|...++-                 ...|.|..||..+++...+.        
T Consensus        88 ~~~~~~~~~--~~----~~V~~v~~sp~g~~l~sg-----------------s~dg~V~lwd~~~~~~~~~~i~~~~~~~  144 (902)
T 2oaj_A           88 SQKVLTTVF--VP----GKITSIDTDASLDWMLIG-----------------LQNGSMIVYDIDRDQLSSFKLDNLQKSS  144 (902)
T ss_dssp             TCSEEEEEE--CS----SCEEEEECCTTCSEEEEE-----------------ETTSCEEEEETTTTEEEEEEECCHHHHH
T ss_pred             CCcEEEEEc--CC----CCEEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCCccccceeccccccc
Confidence            4   22221  11    235688999999655442                 34567899998877654221        


Q ss_pred             ----cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-----------------CCCCCeEEECC
Q 016199          232 ----SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-----------------PGLPDNIRYDG  290 (393)
Q Consensus       232 ----~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-----------------~g~P~~i~~d~  290 (393)
                          ........++++|++..++++....+.| .|++...+  ....+....                 ......+++++
T Consensus       145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence                1123467899999754566667778888 99985432  111221110                 01234678899


Q ss_pred             CCCEEEEEecC
Q 016199          291 EGHYLIALATE  301 (393)
Q Consensus       291 ~G~lwva~~~~  301 (393)
                      +|++.++....
T Consensus       222 dg~~lasgs~D  232 (902)
T 2oaj_A          222 NSLHIITIHED  232 (902)
T ss_dssp             TSSEEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            99977765543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.21  E-value=0.00011  Score=76.31  Aligned_cols=251  Identities=9%  Similarity=0.057  Sum_probs=132.9

Q ss_pred             CceEEEecCCCEEEEEec---------CCeEEEEEcCCCCCccee---eeeecCCCceeeeEECCCCCCCCceEEEEEeC
Q 016199           85 PEDLLYDAHSKLIYTGCE---------DGWIKRVTLNDSPADSLV---HNWINTGGRPLGIAFANSDPDADRITMIVADA  152 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~---------~g~I~~~~~~~~~~~~~~---~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~  152 (393)
                      ..+++++|||+.|.+++.         ++.|+.++.+++.    .   ..+   ......+++.+||     +.|.++ .
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~----~~~~~~l---~~~~~~~~~SPDG-----~~la~~-~  128 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE----FVRGNEL---PRPIQYLCWSPVG-----SKLAYV-Y  128 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----ECCSSCC---CSSBCCEEECSST-----TCEEEE-E
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc----cccceec---CcccccceECCCC-----CEEEEE-E
Confidence            568999999997776654         5789999988765    3   222   2456789999999     134443 4


Q ss_pred             CCceEEEeCCc--eEEEeecc-C-----Ccc--------ccccccEEEcCCCc-EEEEeCCCccchhhhe----------
Q 016199          153 YKGLLKISGNS--TVLLTDEA-E-----GQK--------FKLTDGVDVADDGM-IYFTDASNKYYLREYI----------  205 (393)
Q Consensus       153 ~~gl~~id~~g--~~~l~~~~-~-----g~~--------~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~----------  205 (393)
                      .+.|+.++.++  ...+.... .     |.+        +....+++++|||. |.++.... .....|.          
T Consensus       129 ~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~-~~~~~~~~~~~~~~~~~  207 (719)
T 1z68_A          129 QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND-TDIPVIAYSYYGDEQYP  207 (719)
T ss_dssp             TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC-TTSCEEEEEECCSSSSC
T ss_pred             CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCc
Confidence            56788888754  33332110 0     000        01124789999995 54442110 0000000          


Q ss_pred             ------eh-hcccCCCcEEEEEeCCCCeEE---EEe------cCccCCCcEEEcCCCCEEEEE-eCCC--CeEEEEE---
Q 016199          206 ------LD-IFEGKPNGRLLSFDPVTKETK---VLV------SDLYFANGVVLSPDQTHLVYC-ETSM--RRCRKFY---  263 (393)
Q Consensus       206 ------~~-~~e~~~~g~l~~~d~~t~~~~---~~~------~~l~~~ngi~~s~dg~~l~v~-~~~~--~ri~~~~---  263 (393)
                            +- ..+......|+.+|.++++..   .+.      ........++++||++.++.. +...  .+|+.++   
T Consensus       208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~  287 (719)
T 1z68_A          208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRE  287 (719)
T ss_dssp             EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred             cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccC
Confidence                  00 000112346888888876531   221      112234678999997544332 2222  3588888   


Q ss_pred             -ecCCCCcceeeee----ccCCCCCC-----eEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCC
Q 016199          264 -IKGKNAGRVEKFI----ETLPGLPD-----NIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMG  332 (393)
Q Consensus       264 -~~g~~~~~~~~~~----~~l~g~P~-----~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  332 (393)
                       +++.   +...+.    ....+.-+     .+++++||+ +++......                              
T Consensus       288 ~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------------------------------  334 (719)
T 1z68_A          288 DWQTW---DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD------------------------------  334 (719)
T ss_dssp             SSSSE---ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT------------------------------
T ss_pred             CCCCC---ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC------------------------------
Confidence             5322   222122    12222222     678899998 333222110                              


Q ss_pred             CCCceEEEECCCCcEEEEeeCCCCC--ccEEEEEeCCEEEEEecC------CCeEEEEeCC
Q 016199          333 KSSSGVFIVDLDGKPIAHYYDPEMS--LISSAIKIGDHLYCGSVH------HRGILHLDVN  385 (393)
Q Consensus       333 ~~~~~v~~~d~~g~~~~~~~d~~~~--~~~~~~~~~g~Lyigs~~------~~~i~~~~~~  385 (393)
                       ....|..++.++.....+......  .+.. . +++.||+.+..      ...|.+++++
T Consensus       335 -g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~  392 (719)
T 1z68_A          335 -GYKHIHYIKDTVENAIQITSGKWEAINIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIG  392 (719)
T ss_dssp             -SCEEEEEESSCSTTCEECSCSSSCEEEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred             -CceEEEEEECCCCceEecccCceEEEEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence             013588888776555555543321  2222 2 66788887753      2467777763

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.21  E-value=0.00016  Score=68.52  Aligned_cols=179  Identities=9%  Similarity=0.072  Sum_probs=96.9

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC--ceee--e----------------EECCCCCCCCceEE
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG--RPLG--I----------------AFANSDPDADRITM  147 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~--~p~g--l----------------~~d~~G~~~~~~~L  147 (393)
                      +++++||+.|++...++.|+.++.+++.    ...+.....  .|.|  |                .+.++|     +.+
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-----~~~  156 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLE----EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-----SWE  156 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-----SHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCC----cEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-----cce
Confidence            7789999988777777789999988765    333322111  1111  1                223333     011


Q ss_pred             EEE-----eCCCceEEEeCCc--eEEEeeccCCccccccccEEEcC-CCc-EEEEeCCCccchhhheehhcccCCCcEEE
Q 016199          148 IVA-----DAYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGM-IYFTDASNKYYLREYILDIFEGKPNGRLL  218 (393)
Q Consensus       148 ~v~-----~~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~  218 (393)
                      .++     .....|+.++.++  ...+...     ...+..+.+++ +|. |++......            .....+|+
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~------------~~~~~~l~  219 (396)
T 3c5m_A          157 KFAEFYHTNPTCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHEGPH------------DLVDARMW  219 (396)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCS------------SSCSCCCE
T ss_pred             eeeeeccCCCcceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEecCCC------------CCCCceEE
Confidence            111     1223466777654  3333211     12244678888 674 666531100            01124799


Q ss_pred             EEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEEeC--CC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECC-C
Q 016199          219 SFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYCET--SM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-E  291 (393)
Q Consensus       219 ~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~~~--~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~-~  291 (393)
                      .+|.++++.+.+...  ...+..++++|||+.|++...  ..  +.|+++++++.   +.+.+. ..++..  .++++ +
T Consensus       220 ~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g---~~~~l~-~~~~~~--~~~s~~d  293 (396)
T 3c5m_A          220 LVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL---ENEEVM-VMPPCS--HLMSNFD  293 (396)
T ss_dssp             EEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC---CEEEEE-ECCSEE--EEEECSS
T ss_pred             EEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC---CeEEee-eCCCCC--CCccCCC
Confidence            999887766555442  123556799999987666532  22  33899987532   222222 233322  67788 9


Q ss_pred             CCEEEEE
Q 016199          292 GHYLIAL  298 (393)
Q Consensus       292 G~lwva~  298 (393)
                      |++++..
T Consensus       294 g~~l~~~  300 (396)
T 3c5m_A          294 GSLMVGD  300 (396)
T ss_dssp             SSEEEEE
T ss_pred             CceEEEe
Confidence            9966543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.21  E-value=0.00098  Score=67.27  Aligned_cols=186  Identities=9%  Similarity=-0.019  Sum_probs=105.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEE------------------EEEcCCCCCcceeeee-------e--cCCCceeeeEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIK------------------RVTLNDSPADSLVHNW-------I--NTGGRPLGIAF  135 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~------------------~~~~~~~~~~~~~~~~-------~--~~~~~p~gl~~  135 (393)
                      .+-.+++++|||+.+-.++.|+.|.                  .+.|++..+  .+..+       .  .......++++
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~--~~~~~~~~~~~~~~~~~~~~V~~vaw   93 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFEN--KLDFELAQQNGLLNSQPVCYPRVCKP   93 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCC--TTTTSCCCSSCSSTTSCSCCEEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcc--eEEEEeCCCceEeecCCCCcEEEEEE
Confidence            4567899999998555555566663                  233332100  00000       0  01233678999


Q ss_pred             CCCCCCCCceE-EEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCC
Q 016199          136 ANSDPDADRIT-MIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKP  213 (393)
Q Consensus       136 d~~G~~~~~~~-L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~  213 (393)
                      .++|      . |-++...+.+..++.++ ...+. .....+...+++++++|||.+.++-                 +.
T Consensus        94 SPdG------~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg-----------------s~  149 (588)
T 2j04_A           94 SPID------DWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG-----------------NE  149 (588)
T ss_dssp             CSSS------SCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEE-----------------ET
T ss_pred             CCCC------CEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEE-----------------cC
Confidence            9999      5 55555555577778666 32222 1111112347799999999544442                 34


Q ss_pred             CcEEEEEeCCCCe--------EEEEecC----ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc-eeeeeccCC
Q 016199          214 NGRLLSFDPVTKE--------TKVLVSD----LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR-VEKFIETLP  280 (393)
Q Consensus       214 ~g~l~~~d~~t~~--------~~~~~~~----l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~-~~~~~~~l~  280 (393)
                      .|.|..||..++.        +..+..+    ......++++|||   +++....+.+..|++++.+..+ ...+.....
T Consensus       150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            6788899988774        2333211    2457889999998   4455568899999987654211 111211111


Q ss_pred             CCCCeEEECCCCCEEEEEe
Q 016199          281 GLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       281 g~P~~i~~d~~G~lwva~~  299 (393)
                      .....+++.  |+..+++.
T Consensus       227 ~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          227 RKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             SCCCCEEEE--TTEEEEEC
T ss_pred             CcEEEEEEE--CCEEEEEe
Confidence            234567776  45555443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.21  E-value=1.2e-05  Score=70.94  Aligned_cols=164  Identities=13%  Similarity=0.060  Sum_probs=98.9

Q ss_pred             ccccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc---eeeeeecCC-CceeeeEECCCCCCCCc
Q 016199           69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS---LVHNWINTG-GRPLGIAFANSDPDADR  144 (393)
Q Consensus        69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~---~~~~~~~~~-~~p~gl~~d~~G~~~~~  144 (393)
                      .-+..+.+++.+....-.+++++|+|. ||.. .+|.++++++.+.....   ....+...+ ..=..+.+|++|     
T Consensus        27 ~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-----   99 (236)
T 1tl2_A           27 NWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-----   99 (236)
T ss_dssp             CHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-----
T ss_pred             chhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-----
Confidence            345667888887677888999999986 9988 88899999876533110   011111100 012578999999     


Q ss_pred             eEEEEEeCCCceEEEeC--Cc-eEEEee--ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEE
Q 016199          145 ITMIVADAYKGLLKISG--NS-TVLLTD--EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLS  219 (393)
Q Consensus       145 ~~L~v~~~~~gl~~id~--~g-~~~l~~--~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~  219 (393)
                       .||+. ..+.|+++++  ++ ...+..  .+........+.|.++|+|.||..+                   .+.+++
T Consensus       100 -~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-------------------dg~lyr  158 (236)
T 1tl2_A          100 -YLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-------------------GQQFYK  158 (236)
T ss_dssp             -CEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-------------------TTEEEE
T ss_pred             -CEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-------------------CCcEEe
Confidence             99999 5567999986  33 212111  1111112234688999999999874                   345666


Q ss_pred             EeCCCCe-------EEEEe-cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEE
Q 016199          220 FDPVTKE-------TKVLV-SDLYFANGVVLSPDQTHLVYCETSMRRCRKFY  263 (393)
Q Consensus       220 ~d~~t~~-------~~~~~-~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~  263 (393)
                      -.+.++.       .+.+. .+...-.-+.++++| .||...  +++|++-.
T Consensus       159 ~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~~Y~~~  207 (236)
T 1tl2_A          159 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGKFYEDY  207 (236)
T ss_dssp             ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS-CEEEEE--TTEEEEES
T ss_pred             cCCCCCCCcccccccceeccCCcceEEEEEECCCC-cEEEEe--CCeEEecC
Confidence            5443221       12222 222222225578888 466655  67787754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.20  E-value=0.00052  Score=64.37  Aligned_cols=187  Identities=11%  Similarity=0.104  Sum_probs=109.8

Q ss_pred             cCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-----cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEE
Q 016199           92 AHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-----NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVL  166 (393)
Q Consensus        92 ~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-----~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~  166 (393)
                      .+++++.+|+.||.|..|+.+++..   ...+.     .....|.-+.-..|+      .+.+-+....+..++....+.
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~---~~~~~~~~v~~~~~~~~~~s~s~D~------~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKT---ITTITTPNPRTGGEHPAIISRGPCN------RLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSC---EEEEEEECCCTTCCCCSEEEECSTT------EEEEEETTTEEEEEETTTCCE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcE---EEEEecCCceeeeeCCceEEecCCC------eEEEEEccCceEEeecCCcce
Confidence            3456788999999999999886541   22111     111233333445567      777776666666666544111


Q ss_pred             EeeccCCccccccccEEEcC--CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEE
Q 016199          167 LTDEAEGQKFKLTDGVDVAD--DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVL  242 (393)
Q Consensus       167 l~~~~~g~~~~~~~~l~~d~--dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~  242 (393)
                      +.....+. ...+..+++.+  +|.++++-                 ...+.|..||..+++.......  ......+++
T Consensus       117 ~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~-----------------s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~  178 (343)
T 3lrv_A          117 LREIEVDS-ANEIIYMYGHNEVNTEYFIWA-----------------DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL  178 (343)
T ss_dssp             EEEEECCC-SSCEEEEECCC---CCEEEEE-----------------ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE
T ss_pred             eEEeecCC-CCCEEEEEcCCCCCCCEEEEE-----------------eCCCcEEEEECCCCcEEEEEecCCCCceEEEEE
Confidence            11111011 12356888999  88877753                 3356788999887776443322  234688999


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhh
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWD  307 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~  307 (393)
                      +|||+ ++++....+.|..|++...+.. ...+.....+....++++++|.+.++.....-.+||
T Consensus       179 ~pdg~-~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd  241 (343)
T 3lrv_A          179 HKDSL-LLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFD  241 (343)
T ss_dssp             CTTSC-EEEEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEE
T ss_pred             CCCCC-EEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Confidence            99996 4555667889999998643211 022321123334678899999977766544333333

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.20  E-value=0.00031  Score=65.61  Aligned_cols=178  Identities=6%  Similarity=-0.047  Sum_probs=101.3

Q ss_pred             CCceEEEecCCCEEEEEec-C--C--eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-----
Q 016199           84 GPEDLLYDAHSKLIYTGCE-D--G--WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-----  153 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~-~--g--~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-----  153 (393)
                      ...+++++|||+.|++... .  +  .|+.++.+++.    ...+..... ...+++.++|     +.|+++...     
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~----~~~l~~~~~-~~~~~wspdg-----~~l~~~~~~~~~~~  129 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS----SKKILEAKN-IRSLEWNEDS-----RKLLIVGFKRREDE  129 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE----EEEEEEESE-EEEEEECTTS-----SEEEEEEECCCC--
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc----eEEEEcCCC-ccceeECCCC-----CEEEEEEccCCCcC
Confidence            3456899999987665543 2  3  48888887654    444333233 7788999988     246555321     


Q ss_pred             ----------------------CceEEEeCCc--e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehh
Q 016199          154 ----------------------KGLLKISGNS--T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDI  208 (393)
Q Consensus       154 ----------------------~gl~~id~~g--~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~  208 (393)
                                            ..|+.++.++  . +.+..     +  .+..+.+++|| ++++......   .     
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~~~~~~~---~-----  193 (347)
T 2gop_A          130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVNVPHREI---I-----  193 (347)
T ss_dssp             -------CCCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEEEECCCS---S-----
T ss_pred             CcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEEEecccc---c-----
Confidence                                  3477888765  3 34432     1  35578899999 6665311100   0     


Q ss_pred             cccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC-------CCeEEEEEecCCCCcceeeeeccCCC
Q 016199          209 FEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS-------MRRCRKFYIKGKNAGRVEKFIETLPG  281 (393)
Q Consensus       209 ~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~-------~~ri~~~~~~g~~~~~~~~~~~~l~g  281 (393)
                      ........|+.+|  +++.+.+... ..  ...++|||+.+++....       ..+|+.++ .+    +...+....+.
T Consensus       194 ~~~~~~~~l~~~d--~~~~~~l~~~-~~--~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~----~~~~l~~~~~~  263 (347)
T 2gop_A          194 PQYFKFWDIYIWE--DGKEEKMFEK-VS--FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK----EVMGILDEVDR  263 (347)
T ss_dssp             CCSSCCEEEEEEE--TTEEEEEEEE-ES--EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS----CEEESSTTCCS
T ss_pred             ccccccccEEEeC--CCceEEeccC-cc--eeeECCCCCEEEEEEccccCCccccceEEEEC-CC----ceEeccccCCc
Confidence            0000145799999  6776666544 22  22348999988766533       35788887 32    22223222222


Q ss_pred             CCCe-EEECCCCCEEEEEe
Q 016199          282 LPDN-IRYDGEGHYLIALA  299 (393)
Q Consensus       282 ~P~~-i~~d~~G~lwva~~  299 (393)
                      ...+ ++.+ +| +++...
T Consensus       264 ~~~~~~~~s-dg-~~~~~~  280 (347)
T 2gop_A          264 GVGQAKIKD-GK-VYFTLF  280 (347)
T ss_dssp             EEEEEEEET-TE-EEEEEE
T ss_pred             ccCCccEEc-Cc-EEEEEe
Confidence            2233 6677 77 665543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.20  E-value=0.00094  Score=62.37  Aligned_cols=159  Identities=11%  Similarity=0.066  Sum_probs=93.9

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCC----cceeeeeecCCCceeeeEECCCCCCCCceEEEE-EeCCCceE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPA----DSLVHNWINTGGRPLGIAFANSDPDADRITMIV-ADAYKGLL  157 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~----~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v-~~~~~gl~  157 (393)
                      ..-.+++++|+++.|.+++.|+.|..|+.+....    ......+.........+++.++|      ++++ +...+.|.
T Consensus        59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g------~~las~s~D~~v~  132 (330)
T 2hes_X           59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG------YYLATCSRDKSVW  132 (330)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS------CEEEEEETTSCEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC------CEEEEEeCCCEEE
Confidence            3456799999999888999999999998753210    00122222234567899999999      5444 44445566


Q ss_pred             EEeCC-c---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE---EEE
Q 016199          158 KISGN-S---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET---KVL  230 (393)
Q Consensus       158 ~id~~-g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~---~~~  230 (393)
                      .+|.+ +   .+.+. ...+.. ..+..+++.|+|.++++-                 ...+.|..+|..++..   ..+
T Consensus       133 iwd~~~~~~~~~~~~-~~~~h~-~~v~~v~~~p~~~~l~s~-----------------s~D~~i~iW~~~~~~~~~~~~~  193 (330)
T 2hes_X          133 IWETDESGEEYECIS-VLQEHS-QDVKHVIWHPSEALLASS-----------------SYDDTVRIWKDYDDDWECVAVL  193 (330)
T ss_dssp             EEECCTTCCCCEEEE-EECCCS-SCEEEEEECSSSSEEEEE-----------------ETTSCEEEEEEETTEEEEEEEE
T ss_pred             EEeccCCCCCeEEEE-EeccCC-CceEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCCeeEEEEc
Confidence            67762 2   12221 112211 246688999999877763                 2234566666544432   223


Q ss_pred             ecCccCCCcEEEcCCCC-EEEEEeCCCCeEEEEEecC
Q 016199          231 VSDLYFANGVVLSPDQT-HLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       231 ~~~l~~~ngi~~s~dg~-~l~v~~~~~~ri~~~~~~g  266 (393)
                      .........+++++++. ..+++....+.|..|++.+
T Consensus       194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            23334567789999832 3556666778888888753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.19  E-value=0.002  Score=61.20  Aligned_cols=195  Identities=13%  Similarity=0.086  Sum_probs=107.8

Q ss_pred             eeeeEECCCCCCCCceE-EEEEeC-CCc-eEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhe
Q 016199          130 PLGIAFANSDPDADRIT-MIVADA-YKG-LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       130 p~gl~~d~~G~~~~~~~-L~v~~~-~~g-l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~  205 (393)
                      ...++|.+||      + +.+|.. ..+ |..+|.+. .........    ..+.++++.|||.++++.           
T Consensus       136 ~~~v~fSpDg------~~la~as~~~d~~i~iwd~~~~~~~~~~~~~----~~V~~v~fspdg~~l~s~-----------  194 (365)
T 4h5i_A          136 TKLVYISREG------TVAAIASSKVPAIMRIIDPSDLTEKFEIETR----GEVKDLHFSTDGKVVAYI-----------  194 (365)
T ss_dssp             EEEEEECTTS------SCEEEEESCSSCEEEEEETTTTEEEEEEECS----SCCCEEEECTTSSEEEEE-----------
T ss_pred             EEEEEEcCCC------CEEEEEECCCCCEEEEeECCCCcEEEEeCCC----CceEEEEEccCCceEEec-----------
Confidence            5679999999      5 455544 345 55668765 222111111    236799999999877763           


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEEecC---ccCCCcEEEcCCCCEEEEEeCCCC---eEEEEEecCCCCcc--eeeeec
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVLVSD---LYFANGVVLSPDQTHLVYCETSMR---RCRKFYIKGKNAGR--VEKFIE  277 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~~---l~~~ngi~~s~dg~~l~v~~~~~~---ri~~~~~~g~~~~~--~~~~~~  277 (393)
                             ..+++.+++..+++.......   ......++++||++.++.+.....   .+..+++.......  ...+. 
T Consensus       195 -------s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-  266 (365)
T 4h5i_A          195 -------TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-  266 (365)
T ss_dssp             -------CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-
T ss_pred             -------cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-
Confidence                   133577777666654332221   223567899999976665543322   46666664321111  11111 


Q ss_pred             cCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCC
Q 016199          278 TLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEM  356 (393)
Q Consensus       278 ~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~  356 (393)
                      ........++++++|++.++....                                  +.|..+|. +++.+..+...-.
T Consensus       267 ~~~~~V~~~~~Spdg~~lasgs~D----------------------------------~~V~iwd~~~~~~~~~~~~gH~  312 (365)
T 4h5i_A          267 NRFKGITSMDVDMKGELAVLASND----------------------------------NSIALVKLKDLSMSKIFKQAHS  312 (365)
T ss_dssp             SSCSCEEEEEECTTSCEEEEEETT----------------------------------SCEEEEETTTTEEEEEETTSSS
T ss_pred             CCCCCeEeEEECCCCCceEEEcCC----------------------------------CEEEEEECCCCcEEEEecCccc
Confidence            112223457899999977655433                                  34777775 5677766532212


Q ss_pred             CccEEE-EEeCCEEEEEecCCCeEEEEeCCCC
Q 016199          357 SLISSA-IKIGDHLYCGSVHHRGILHLDVNQH  387 (393)
Q Consensus       357 ~~~~~~-~~~~g~Lyigs~~~~~i~~~~~~~~  387 (393)
                      ..++.+ ...+|++.+++-....|-..++.+.
T Consensus       313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          313 FAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            223333 3345554444445667777777543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.19  E-value=0.00019  Score=69.87  Aligned_cols=250  Identities=14%  Similarity=0.119  Sum_probs=132.9

Q ss_pred             CCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC---CCceeeeEECCCCCCCCceEE-EEEeCCCceEE
Q 016199           84 GPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT---GGRPLGIAFANSDPDADRITM-IVADAYKGLLK  158 (393)
Q Consensus        84 ~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~---~~~p~gl~~d~~G~~~~~~~L-~v~~~~~gl~~  158 (393)
                      .-.+++|+| +++.|++++.||.|..|+.+++.    ...+...   ......++++++|      .+ ..+...+.|..
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~l~~g~~dg~i~~  235 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI----LRVFASSDTINIWFCSLDVSASS------RMVVTGDNVGNVIL  235 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTSCE----EEEEECCSSCSCCCCCEEEETTT------TEEEEECSSSBEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc----eeEEeccCCCCccEEEEEECCCC------CEEEEEeCCCcEee
Confidence            446799997 67789899999999999987654    3333321   1234678899988      54 44544455777


Q ss_pred             EeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEe---cC
Q 016199          159 ISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLV---SD  233 (393)
Q Consensus       159 id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~---~~  233 (393)
                      +|.++....  ...+. ...+..+++.+++. ++++.                 ...+.|..||..+.+.. .+.   ..
T Consensus       236 wd~~~~~~~--~~~~h-~~~v~~v~~~p~~~~~~~s~-----------------s~d~~v~iwd~~~~~~~~~~~~~~~h  295 (435)
T 4e54_B          236 LNMDGKELW--NLRMH-KKKVTHVALNPCCDWFLATA-----------------SVDQTVKIWDLRQVRGKASFLYSLPH  295 (435)
T ss_dssp             EESSSCBCC--CSBCC-SSCEEEEEECTTCSSEEEEE-----------------ETTSBCCEEETTTCCSSSCCSBCCBC
T ss_pred             eccCcceeE--EEecc-cceEEeeeecCCCceEEEEe-----------------cCcceeeEEecccccccceEEEeeec
Confidence            787761111  11121 12366889999874 55442                 22345677776543321 111   11


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-----CCCCCeEEECCCCCEEEEEecCcchhhhh
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-----PGLPDNIRYDGEGHYLIALATEFSTYWDL  308 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-----~g~P~~i~~d~~G~lwva~~~~r~~~~~~  308 (393)
                      ....+.+++++||+.|+ +....+.|..|++.....  ...+....     ...+-.....+++.+.+.........   
T Consensus       296 ~~~v~~~~~spdg~~l~-s~~~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---  369 (435)
T 4e54_B          296 RHPVNAACFSPDGARLL-TTDQKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF---  369 (435)
T ss_dssp             SSCEEECCBCTTSSEEE-EEESSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS---
T ss_pred             cccccceeECCCCCeeE-EEcCCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe---
Confidence            22346788999997664 455678899999853211  11111000     01122345566676554433221100   


Q ss_pred             hhcCcchhhhhhhhhhhhCCCCCCC-CCceEEEECC-CCcEEEEeeCCCCCccEEE--EEeCCEEEEEecCCCeEEEEeC
Q 016199          309 AYRYPFIRKVSGMVVRYLGMPPMGK-SSSGVFIVDL-DGKPIAHYYDPEMSLISSA--IKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       309 ~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~--~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                          ..... ..+.|..+|. +|+.+..+..+....+..+  ...+|.+..++ .++.|..-++
T Consensus       370 --------------------~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~  428 (435)
T 4e54_B          370 --------------------KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASA-MGYHILIWSQ  428 (435)
T ss_dssp             --------------------CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCC
T ss_pred             --------------------EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEEC
Confidence                                01111 1124667775 5788777765442222222  23355554544 4567777677


Q ss_pred             CCCCCC
Q 016199          385 NQHPAR  390 (393)
Q Consensus       385 ~~~~~~  390 (393)
                      ++..+.
T Consensus       429 ~~gk~r  434 (435)
T 4e54_B          429 QEARTR  434 (435)
T ss_dssp             C-----
T ss_pred             CcCeee
Confidence            665543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.14  E-value=0.003  Score=57.52  Aligned_cols=238  Identities=9%  Similarity=0.026  Sum_probs=124.7

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      -.+++++++|+.|.+|+.||.|..|+.++++   ....+.........+..  ++     ..+..+.....+...+... 
T Consensus        70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---~~~~~~~h~~~~~~~~~--~~-----~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---RLRNMTSHSARVGSLSW--NS-----YILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEE--ET-----TEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEeecCCce---eEEEecCccceEEEeec--CC-----CEEEEEecCCceEeeecCCC
Confidence            3578999999999999999999999988754   12333222233344443  34     0355554333344444332 


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-----EEecCccCCC
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-----VLVSDLYFAN  238 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-----~~~~~l~~~n  238 (393)
                      ...+.. ..+. ......+.+.++|...++.                 ...+.|..||..+++..     ..........
T Consensus       140 ~~~~~~-~~~~-~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~  200 (318)
T 4ggc_A          140 EHHVAT-LSGH-SQEVCGLRWAPDGRHLASG-----------------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK  200 (318)
T ss_dssp             SCEEEE-EECC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESSCBTTBSCCSEEECCCCSCEE
T ss_pred             ceeEEE-EcCc-cCceEEEEEcCCCCEEEEE-----------------ecCcceeEEECCCCcccccceeeecccCCceE
Confidence            111111 1111 1224467788888766653                 23456888887654321     1111223345


Q ss_pred             cEEEcCCCCEEEE--EeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchh
Q 016199          239 GVVLSPDQTHLVY--CETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIR  316 (393)
Q Consensus       239 gi~~s~dg~~l~v--~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r  316 (393)
                      .+++.+++..++.  +....+.|..++....   ...... ........+++.++++..+...+..+             
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d-------------  263 (318)
T 4ggc_A          201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAV-DAHSQVCSILWSPHYKELISGHGFAQ-------------  263 (318)
T ss_dssp             EEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEEEEE-ECSSCEEEEEEETTTTEEEEEECTTT-------------
T ss_pred             EEEecCCCCcEEEEEecCCCCEEEEEecccc---cccccc-cceeeeeeeeecccccceEEEEEcCC-------------
Confidence            6777777665443  3344556777775432   111111 11222345667777776654432211             


Q ss_pred             hhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEE-EEeCC-EEEEEecCCCeEEEEeCCCCCC
Q 016199          317 KVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSA-IKIGD-HLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~-~~~~g-~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                                         +.|..+|. +++.+..+..... .++.+ ...+| .|.-|+ ....|-.-|+.+..|
T Consensus       264 -------------------~~i~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s-~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          264 -------------------NQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAA-ADETLRLWRCFELDP  318 (318)
T ss_dssp             -------------------CCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEE-TTTEEEEECCSCCCC
T ss_pred             -------------------CEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCCC
Confidence                               34677774 5788888764432 23333 33344 455444 455666667655443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.11  E-value=0.00039  Score=66.40  Aligned_cols=156  Identities=13%  Similarity=0.149  Sum_probs=101.7

Q ss_pred             ceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCCc
Q 016199           86 EDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKISGNS  163 (393)
Q Consensus        86 e~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g  163 (393)
                      .++++.+ +++.+.+++.|+.|..|+.....  .....+....+....+++.++|      ++++.... +.|..+|...
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h~~~v~~v~~~p~~------~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDINSVKFFPDG------QRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTC--CCCEEECCCSSCCCEEEECTTS------SEEEEECSSSCEEEEETTT
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCC--cceEEECCcCCCeEEEEEecCC------CeEEEEcCCCeEEEEECCC
Confidence            3466655 67778888999999999986321  0133443344567899999999      55555444 4466778654


Q ss_pred             ---eEEEeeccC--CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-----cC
Q 016199          164 ---TVLLTDEAE--GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-----SD  233 (393)
Q Consensus       164 ---~~~l~~~~~--g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-----~~  233 (393)
                         ...+.....  ......+..++++++|.+.++-                 ...|.|+.||..+++.....     ..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----------------~~dg~i~vwd~~~~~~~~~~~~~~~~h  343 (380)
T 3iz6_a          281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-----------------YSNGDCYVWDTLLAEMVLNLGTLQNSH  343 (380)
T ss_dssp             TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE-----------------CTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred             CcEEEEecccccccccccCceEEEEECCCCCEEEEE-----------------ECCCCEEEEECCCCceEEEEecccCCC
Confidence               222221111  1112346789999999877663                 34578999998776654322     12


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                      ....+.++++|||+. +++.+..+.|..|++.+.
T Consensus       344 ~~~v~~l~~s~dg~~-l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          344 EGRISCLGLSSDGSA-LCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CCCCCEEEECSSSSE-EEEECTTSCEEEEECCSS
T ss_pred             CCceEEEEECCCCCE-EEEeeCCCCEEEEecCCC
Confidence            345688999999975 566777889999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.10  E-value=0.00066  Score=62.36  Aligned_cols=190  Identities=9%  Similarity=0.063  Sum_probs=105.4

Q ss_pred             CceEEEec--CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCC--CCCCCceEEEEEeCCCceEEEe
Q 016199           85 PEDLLYDA--HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANS--DPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        85 Pe~ia~d~--~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~--G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      -.++++.+  +|+.|.+++.|+.|..|+..++... ....+.........+++.++  |     ..|..+...+.|..++
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g-----~~l~s~s~d~~v~~wd  129 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYG-----PMLLVASSDGKVSVVE  129 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGC-----SEEEEEETTSEEEEEE
T ss_pred             eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCC-----cEEEEEECCCcEEEEE
Confidence            34677864  3778889999999999998764300 02222222345788999886  6     1455555455566666


Q ss_pred             CCc---eEEEeeccCCccccccccEEEcCC-------------CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          161 GNS---TVLLTDEAEGQKFKLTDGVDVADD-------------GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       161 ~~g---~~~l~~~~~g~~~~~~~~l~~d~d-------------G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      ...   ....  ...+.. ..++.+++.++             +.++++-                 ...+.|..||..+
T Consensus       130 ~~~~~~~~~~--~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg-----------------s~D~~v~lwd~~~  189 (297)
T 2pm7_B          130 FKENGTTSPI--IIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTG-----------------GADNLVKIWKYNS  189 (297)
T ss_dssp             BCSSSCBCCE--EEECCS-SCEEEEEECCCC------------CCEEEEE-----------------ETTSCEEEEEEET
T ss_pred             ecCCCceeee--eeeccc-CccceEeecCCcccccccCCCCCCcceEEEE-----------------cCCCcEEEEEEcC
Confidence            532   1111  011111 22456677765             3344442                 2234565565543


Q ss_pred             Ce----E-EEEecCccCCCcEEEcCCC--CEEEEEeCCCCeEEEEEecCCCCcceeeee--ccCCCCCCeEEECCCCCEE
Q 016199          225 KE----T-KVLVSDLYFANGVVLSPDQ--THLVYCETSMRRCRKFYIKGKNAGRVEKFI--ETLPGLPDNIRYDGEGHYL  295 (393)
Q Consensus       225 ~~----~-~~~~~~l~~~ngi~~s~dg--~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~~l~g~P~~i~~d~~G~lw  295 (393)
                      ++    . ..+.......+.++++|++  ..++++.+..+.|..|+++...........  ...++....++++++|++.
T Consensus       190 ~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  269 (297)
T 2pm7_B          190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL  269 (297)
T ss_dssp             TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred             CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEE
Confidence            32    1 2222234456889999996  466777778899999998643211111111  1122233457789999877


Q ss_pred             EEEec
Q 016199          296 IALAT  300 (393)
Q Consensus       296 va~~~  300 (393)
                      ++...
T Consensus       270 as~~~  274 (297)
T 2pm7_B          270 ALSGG  274 (297)
T ss_dssp             EEEET
T ss_pred             EEEcC
Confidence            65543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.10  E-value=0.00033  Score=66.28  Aligned_cols=133  Identities=13%  Similarity=0.156  Sum_probs=86.1

Q ss_pred             cEEEEEeCCCCeEEEEe-------cCccCCCcEEE--cCC-CC-EEEEEeCCCCeEEEEEecCCCCc--c---eeeeecc
Q 016199          215 GRLLSFDPVTKETKVLV-------SDLYFANGVVL--SPD-QT-HLVYCETSMRRCRKFYIKGKNAG--R---VEKFIET  278 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~-------~~l~~~ngi~~--s~d-g~-~l~v~~~~~~ri~~~~~~g~~~~--~---~~~~~~~  278 (393)
                      -++|.+|+.+++++.+.       ..+..|.|+|+  +++ ++ ++|+++. .+++..|.+.....+  +   ...|  .
T Consensus       101 l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-~G~~~q~~l~~~~~g~~~~~lVR~f--~  177 (355)
T 3amr_A          101 IEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-EGEFEQYELKADKNGYISGKKVRAF--K  177 (355)
T ss_dssp             EEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSCEEEEEEEEE--E
T ss_pred             EEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-CCeEEEEEEEeCCCCcccceEEEEe--c
Confidence            34566698888877662       34578999999  664 44 5777765 489999888532111  1   2222  3


Q ss_pred             CCCCCCeEEECC-CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC------CcEEEEe
Q 016199          279 LPGLPDNIRYDG-EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD------GKPIAHY  351 (393)
Q Consensus       279 l~g~P~~i~~d~-~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~------g~~~~~~  351 (393)
                      +++.|.++++|+ .|.+||+...                                   .+|.+|+.+      ++++..+
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eEd-----------------------------------~GIw~~da~p~~~~~~~~v~~~  222 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEED-----------------------------------EAIWKFSAEPDGGSNGTVIDRA  222 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETT-----------------------------------TEEEEEECSTTSCSCCEEEEEB
T ss_pred             CCCCcceEEEcCCCCeEEEeccc-----------------------------------ceEEEEeCCcCCCCCceEEEEe
Confidence            567789999986 4789998764                                   369999844      3455554


Q ss_pred             eCCC----CCccEEEEEeC--CEEEEEecCCCeEEEEeCC
Q 016199          352 YDPE----MSLISSAIKIG--DHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       352 ~d~~----~~~~~~~~~~~--g~Lyigs~~~~~i~~~~~~  385 (393)
                      ..+.    ...++.....+  |+|++++-.++.+..|+..
T Consensus       223 ~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          223 DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            3332    22333221222  5899999888899999885

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.0024  Score=59.49  Aligned_cols=152  Identities=15%  Similarity=0.128  Sum_probs=90.2

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-c-CCCceeeeEECCCCCCCCceEEE-EEeCCCceEEEeC
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-N-TGGRPLGIAFANSDPDADRITMI-VADAYKGLLKISG  161 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-~-~~~~p~gl~~d~~G~~~~~~~L~-v~~~~~gl~~id~  161 (393)
                      -.+++++++  .|.+++.|+.|..|+...+.. .....+. . .......+++.++|      +++ .+...+.|..++.
T Consensus        17 v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~------~~las~s~D~~v~iw~~   87 (330)
T 2hes_X           17 IWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-TLIDVLDETAHKKAIRSVAWRPHT------SLLAAGSFDSTVSIWAK   87 (330)
T ss_dssp             EEEEEEETT--EEEEEESSSCEEEEECSSSCC-EEEEEECTTCCCSCEEEEEECTTS------SEEEEEETTSCEEEEEC
T ss_pred             eeeeccCCC--EEEEEcCCCEEEEEEecCCCe-EEEEEEecCCccCCEEEEEECCCC------CEEEEEeCCCcEEEEEc
Confidence            345777765  788889999999999875421 0122221 1 23457899999998      554 4444445666665


Q ss_pred             Cc-------eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-C---e-EEE
Q 016199          162 NS-------TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-K---E-TKV  229 (393)
Q Consensus       162 ~g-------~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-~---~-~~~  229 (393)
                      +.       .+.+ ....+.. ..+..+++.++|.++++-                 ...+.|..||... +   + ...
T Consensus        88 ~~~~~~~~~~~~~-~~~~~h~-~~V~~v~~sp~g~~las~-----------------s~D~~v~iwd~~~~~~~~~~~~~  148 (330)
T 2hes_X           88 EESADRTFEMDLL-AIIEGHE-NEVKGVAWSNDGYYLATC-----------------SRDKSVWIWETDESGEEYECISV  148 (330)
T ss_dssp             -------CCCEEE-EEEC-----CEEEEEECTTSCEEEEE-----------------ETTSCEEEEECCTTCCCCEEEEE
T ss_pred             ccCcCccccceeE-EEEcCCC-CcEEEEEECCCCCEEEEE-----------------eCCCEEEEEeccCCCCCeEEEEE
Confidence            32       1111 1122221 346789999999876663                 2345677787632 2   1 222


Q ss_pred             EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +.......+.++++|+++. +++....+.|..|+..
T Consensus       149 ~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEAL-LASSSYDDTVRIWKDY  183 (330)
T ss_dssp             ECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEEEE
T ss_pred             eccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECC
Confidence            3333445678999999965 4566667888888864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.0058  Score=57.05  Aligned_cols=144  Identities=11%  Similarity=0.080  Sum_probs=86.7

Q ss_pred             CceeeeEECC--CCCCCCceEEEE-EeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhh
Q 016199          128 GRPLGIAFAN--SDPDADRITMIV-ADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE  203 (393)
Q Consensus       128 ~~p~gl~~d~--~G~~~~~~~L~v-~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~  203 (393)
                      +....+++++  +|      ++++ +...+.|..+|... .......  ......+..+++.++|.++++-         
T Consensus       126 ~~v~~~~~~~~~~~------~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~~i~~~~~~pdg~~lasg---------  188 (343)
T 3lrv_A          126 NEIIYMYGHNEVNT------EYFIWADNRGTIGFQSYEDDSQYIVHS--AKSDVEYSSGVLHKDSLLLALY---------  188 (343)
T ss_dssp             SCEEEEECCC---C------CEEEEEETTCCEEEEESSSSCEEEEEC--CCSSCCCCEEEECTTSCEEEEE---------
T ss_pred             CCEEEEEcCCCCCC------CEEEEEeCCCcEEEEECCCCcEEEEEe--cCCCCceEEEEECCCCCEEEEE---------
Confidence            4578899999  88      6555 54455577778655 2211111  1111236789999999877763         


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEE--EEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeeccC
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETK--VLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA-GRVEKFIETL  279 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~--~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~-~~~~~~~~~l  279 (393)
                              ...+.|..||..+++..  .+.. .....+.++++|||..+..+.  .+.|..|++...+. ...+.+.  .
T Consensus       189 --------~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~--~  256 (343)
T 3lrv_A          189 --------SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYT--I  256 (343)
T ss_dssp             --------CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCB--C
T ss_pred             --------cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccc--c
Confidence                    34567899998877643  3333 345568899999998776665  34899999864321 1111111  0


Q ss_pred             CCCCC---eEEECCCCCEEEEEec
Q 016199          280 PGLPD---NIRYDGEGHYLIALAT  300 (393)
Q Consensus       280 ~g~P~---~i~~d~~G~lwva~~~  300 (393)
                      ...+-   .++++++|++.++...
T Consensus       257 ~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          257 PEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             -----CCEEEEECTTSSEEEEEET
T ss_pred             ccccccceEEEECCCCCEEEEecC
Confidence            11222   3899999998776543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.07  E-value=0.00055  Score=63.59  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=91.9

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC--CCCCCCceEEEEEeCCCceEEEeC
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN--SDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~--~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      .-.+++++++|+.|.+++.|+.|..|+...+.. .....+....+....+++.+  +|     +.|..+..++.|..+|.
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~-----~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYG-----NILASCSYDRKVIIWRE   88 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-EEEEEEECCSSCEEEEEECCGGGS-----SCEEEEETTSCEEEECC
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-EEEEEEcCCCccEEEEEeCCCCCC-----CEEEEEECCCEEEEEEC
Confidence            345689999999899999999999998865420 01223333345678899864  35     14555555555777776


Q ss_pred             Cc--eEEEeeccCCccccccccEEEcCC--CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-EEEEe---cC
Q 016199          162 NS--TVLLTDEAEGQKFKLTDGVDVADD--GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-TKVLV---SD  233 (393)
Q Consensus       162 ~g--~~~l~~~~~g~~~~~~~~l~~d~d--G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~~~~~---~~  233 (393)
                      ..  .+... ...+.. ..++.+++.++  |.++++-                 ...+.+..+|..++. .....   ..
T Consensus        89 ~~~~~~~~~-~~~~h~-~~V~~v~~~p~~~g~~lasg-----------------s~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           89 ENGTWEKSH-EHAGHD-SSVNSVCWAPHDYGLILACG-----------------SSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             SSSCCCEEE-EECCCS-SCCCEEEECCTTTCSCEEEE-----------------CSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             CCCcceEEE-EccCCC-CceEEEEECCCCCCcEEEEE-----------------cCCCCEEEEecCCCCCcceeeeeccc
Confidence            43  12221 112211 34678999887  6555552                 234556666665432 22111   11


Q ss_pred             ccCCCcEEEcCCC----------------CEEEEEeCCCCeEEEEEec
Q 016199          234 LYFANGVVLSPDQ----------------THLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       234 l~~~ngi~~s~dg----------------~~l~v~~~~~~ri~~~~~~  265 (393)
                      ....+.++++|+.                ..++++....+.|..|++.
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE  197 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence            2234567777763                1355666677888888875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.05  E-value=0.0018  Score=59.37  Aligned_cols=162  Identities=9%  Similarity=0.033  Sum_probs=97.3

Q ss_pred             CCCceEEEec--CCCEEEEEecCCeEEEEEcCCCCCc------ceeeeeecCCCceeeeEECCC--CCCCCceEEEEEeC
Q 016199           83 KGPEDLLYDA--HSKLIYTGCEDGWIKRVTLNDSPAD------SLVHNWINTGGRPLGIAFANS--DPDADRITMIVADA  152 (393)
Q Consensus        83 ~~Pe~ia~d~--~g~~L~~~~~~g~I~~~~~~~~~~~------~~~~~~~~~~~~p~gl~~d~~--G~~~~~~~L~v~~~  152 (393)
                      ....++++.+  +++.|.+++.+|.|..|+.+.+...      .....+.........+++.++  +     +.++.+..
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~l~~~~~  132 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-----LKLACLGN  132 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-----SEEEEEET
T ss_pred             CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-----cEEEEecC
Confidence            4556788988  5888999999999999998765311      112223233456789999987  7     14555555


Q ss_pred             CCceEEEeCCc---eEEE--ee---c---cCCccccccccEEEcCC---CcEEEEeCCCccchhhheehhcccCCCcEEE
Q 016199          153 YKGLLKISGNS---TVLL--TD---E---AEGQKFKLTDGVDVADD---GMIYFTDASNKYYLREYILDIFEGKPNGRLL  218 (393)
Q Consensus       153 ~~gl~~id~~g---~~~l--~~---~---~~g~~~~~~~~l~~d~d---G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~  218 (393)
                      .+.|..+|...   ...+  ..   .   ........+..+.+.++   +.++++.                 ...+.+.
T Consensus       133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~-----------------~~~~~~~  195 (351)
T 3f3f_A          133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS-----------------ALEQAII  195 (351)
T ss_dssp             TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE-----------------ETTEEEE
T ss_pred             CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe-----------------cCCCcEE
Confidence            55577777532   1111  00   0   01111234567788876   6555442                 2344565


Q ss_pred             EEeCCCCeEEEE---ecCccCCCcEEEcCCCC---EEEEEeCCCCeEEEEEecC
Q 016199          219 SFDPVTKETKVL---VSDLYFANGVVLSPDQT---HLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       219 ~~d~~t~~~~~~---~~~l~~~ngi~~s~dg~---~l~v~~~~~~ri~~~~~~g  266 (393)
                      .++...++...+   .......+.+++++++.   .++++....+.|..|++..
T Consensus       196 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          196 YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             EEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             EEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            566555554332   22234467899999983   4566666788899999864

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.04  E-value=0.0019  Score=62.02  Aligned_cols=198  Identities=11%  Similarity=0.105  Sum_probs=120.1

Q ss_pred             ccCCCceEEEecCCCEEEEEecC----------------CeEEEEEcCCC--CCcceeeeeec------CCCceeeeEEC
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCED----------------GWIKRVTLNDS--PADSLVHNWIN------TGGRPLGIAFA  136 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~----------------g~I~~~~~~~~--~~~~~~~~~~~------~~~~p~gl~~d  136 (393)
                      .+...-.+.+|+.+ +||+-+..                .+|+.||+.+.  +   .++.+.-      .......|++|
T Consensus        85 ~lvsV~~v~iD~~~-rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~---li~~y~~p~~~~~~~S~l~di~VD  160 (381)
T 3q6k_A           85 ELTSIYQPVIDDCR-RLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYP---EVVRYYFPTRLVEKPTYFGGFAVD  160 (381)
T ss_dssp             SSSCEEEEEECTTC-EEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCC---EEEEEECCGGGCCCGGGEEEEEEE
T ss_pred             ceEEeeEEEEcCCC-cEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCce---eEEEEECCHHhcccCCccceEEEe
Confidence            36777889999987 58864421                26899999876  4   2333321      12345788888


Q ss_pred             -CCCC-CCCceEEEEEeC-CCceEEEeCCc---eEEEee----------ccCCccc---cccccEEEcCC----C-cEEE
Q 016199          137 -NSDP-DADRITMIVADA-YKGLLKISGNS---TVLLTD----------EAEGQKF---KLTDGVDVADD----G-MIYF  192 (393)
Q Consensus       137 -~~G~-~~~~~~L~v~~~-~~gl~~id~~g---~~~l~~----------~~~g~~~---~~~~~l~~d~d----G-~l~~  192 (393)
                       .+.. +.++...||+|. ..||..+|...   -+++..          ..+|.++   ..+++|+.+++    + .|||
T Consensus       161 ~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf  240 (381)
T 3q6k_A          161 VANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYY  240 (381)
T ss_dssp             ESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEE
T ss_pred             cccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEE
Confidence             2100 001127899997 56799998754   222311          1123333   25678888886    4 7999


Q ss_pred             EeCCCccchhhheehhcccCCCcEEEEEeC------C-CCeEEEEecCccCCC--cEEEc-CCCCEEEEEeCCCCeEEEE
Q 016199          193 TDASNKYYLREYILDIFEGKPNGRLLSFDP------V-TKETKVLVSDLYFAN--GVVLS-PDQTHLVYCETSMRRCRKF  262 (393)
Q Consensus       193 td~~~~~~~~~~~~~~~e~~~~g~l~~~d~------~-t~~~~~~~~~l~~~n--gi~~s-~dg~~l~v~~~~~~ri~~~  262 (393)
                      .-.++                 .++|+...      . ...++.+.+......  +.+++ .+| .||+++...+.|.++
T Consensus       241 ~plss-----------------~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w  302 (381)
T 3q6k_A          241 LAGSA-----------------IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCW  302 (381)
T ss_dssp             EESSC-----------------SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEE
T ss_pred             EECCC-----------------CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEE
Confidence            86443                 24665541      0 123333333222234  35565 455 899999999999999


Q ss_pred             EecC-C-CCcceeeeecc-CCCCCCeEEECCCCCEEEEEec
Q 016199          263 YIKG-K-NAGRVEKFIET-LPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       263 ~~~g-~-~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      +.++ + +....+.++.. .--+|+++.+|.+|.+|+....
T Consensus       303 ~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          303 NTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             ETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             eCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            9875 3 12344555422 2237999999999999998763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.03  E-value=0.00056  Score=63.67  Aligned_cols=203  Identities=12%  Similarity=0.042  Sum_probs=110.5

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEE--CCCCCCCCceEE-EEEeCCCceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAF--ANSDPDADRITM-IVADAYKGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~--d~~G~~~~~~~L-~v~~~~~gl~~i  159 (393)
                      ....++++.++++.|++++.+|.|..|+.+++.    .............+++  +++|      ++ +.+...+.|..+
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~------~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ----AIQIAQHDAPVKTIHWIKAPNY------SCVMTGSWDKTLKFW  156 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----EEEEEECSSCEEEEEEEECSSC------EEEEEEETTSEEEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC----ceeeccccCceEEEEEEeCCCC------CEEEEccCCCcEEEE
Confidence            456679999999989999999999999988765    4444344566788998  8888      64 444444557777


Q ss_pred             eCCc---eEEEeeccCCc--cccccccEEEcCCCcEEEEeCCCccch--------------------hhhe-ehhcccCC
Q 016199          160 SGNS---TVLLTDEAEGQ--KFKLTDGVDVADDGMIYFTDASNKYYL--------------------REYI-LDIFEGKP  213 (393)
Q Consensus       160 d~~g---~~~l~~~~~g~--~~~~~~~l~~d~dG~l~~td~~~~~~~--------------------~~~~-~~~~e~~~  213 (393)
                      |...   ...+.......  ......-+....++.+.+-+.......                    ..+. ..+..+..
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            7543   22221110000  000011112223333333332211000                    0000 00223344


Q ss_pred             CcEEEEEeCCCCe----EEEEecCcc------------CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec
Q 016199          214 NGRLLSFDPVTKE----TKVLVSDLY------------FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE  277 (393)
Q Consensus       214 ~g~l~~~d~~t~~----~~~~~~~l~------------~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~  277 (393)
                      .+.+..||..+..    ...+.....            ....+++++|++.++. ....+.|..|++...+  ....+. 
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~--~~~~~~-  312 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLAT-VGSDGRFSFWDKDART--KLKTSE-  312 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEE-EETTSCEEEEETTTTE--EEEECC-
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEE-EccCCeEEEEECCCCc--EEEEec-
Confidence            5667777766542    112211111            4678999999976654 4567889999985321  112221 


Q ss_pred             cCCCCCCeEEECCCCCEEEEEe
Q 016199          278 TLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       278 ~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ...+....++++++|++.++..
T Consensus       313 ~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          313 QLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCCCCceEEEECCCCCeEEEEe
Confidence            2233356788999998666554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.03  E-value=0.0013  Score=62.21  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             CCCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           83 KGPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ....++++.+ +++.+++++.+|.|..|+..++.    .............+.+.+.++  ....++++...+.|..+|.
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ----TADVFNFEETVYSHHMSPVST--KHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE----EEEEEECSSCEEEEEECSSCS--SCCEEEEEESSSSEEEEES
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc----cceeccCCCceeeeEeecCCC--CCcEEEEEcCCCeEEEEeC
Confidence            4456788998 66678888889999999988754    332223345567777766330  0014555555566778886


Q ss_pred             Cc---eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe--EEEE-----
Q 016199          162 NS---TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE--TKVL-----  230 (393)
Q Consensus       162 ~g---~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~--~~~~-----  230 (393)
                      ..   ...+.    +. ...+..+++.+++. ++++.                 ...+.|..||..++.  ...+     
T Consensus       174 ~~~~~~~~~~----~~-~~~v~~~~~~~~~~~ll~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~~~  231 (408)
T 4a11_B          174 KSGSCSHILQ----GH-RQEILAVSWSPRYDYILATA-----------------SADSRVKLWDVRRASGCLITLDQHNG  231 (408)
T ss_dssp             SSSCCCEEEC----CC-CSCEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred             CCcceeeeec----CC-CCcEEEEEECCCCCcEEEEE-----------------cCCCcEEEEECCCCCccccccccccc
Confidence            54   22221    11 12356889999985 55542                 234568888875543  1111     


Q ss_pred             ----------ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          231 ----------VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       231 ----------~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                                .........++++++++.++.+. ..+.|..|++..
T Consensus       232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~  276 (408)
T 4a11_B          232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSN  276 (408)
T ss_dssp             CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             ccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCC
Confidence                      01123356789999997765554 578899999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.00  E-value=0.0057  Score=59.26  Aligned_cols=226  Identities=10%  Similarity=0.101  Sum_probs=128.1

Q ss_pred             EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEe
Q 016199           89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLT  168 (393)
Q Consensus        89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~  168 (393)
                      ++..+|+.|++++.+|.|..|+..++.   ....+....+....++++ +.      .++.+...+.|..+|.+..+.+.
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~-~~------~l~s~~~dg~i~vwd~~~~~~~~  193 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMR-DN------IIISGSTDRTLKVWNAETGECIH  193 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEE-TT------EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCc---EEEEEcCCCCCEEEEEec-CC------EEEEEeCCCeEEEEECCcCcEEE
Confidence            455567889999999999999987654   133333334556778887 34      67777666668888865411111


Q ss_pred             eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccCCCcEEEcCCCC
Q 016199          169 DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYFANGVVLSPDQT  247 (393)
Q Consensus       169 ~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~~ngi~~s~dg~  247 (393)
                       ...+.. ..+..+.+++ +.++.+                  ...+.|..||..+++.... .........+++  +++
T Consensus       194 -~~~~h~-~~v~~~~~~~-~~l~s~------------------s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~  250 (445)
T 2ovr_B          194 -TLYGHT-STVRCMHLHE-KRVVSG------------------SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR  250 (445)
T ss_dssp             -EECCCS-SCEEEEEEET-TEEEEE------------------ETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred             -EECCCC-CcEEEEEecC-CEEEEE------------------eCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence             111111 2244566642 234444                  3456899999877664433 333333455555  665


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhC
Q 016199          248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLG  327 (393)
Q Consensus       248 ~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~  327 (393)
                      .+ ++....+.|..|++...+  ....+. ...+....+.+  +|++.++....                          
T Consensus       251 ~l-~~~~~dg~i~iwd~~~~~--~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d--------------------------  298 (445)
T 2ovr_B          251 RV-VSGAYDFMVKVWDPETET--CLHTLQ-GHTNRVYSLQF--DGIHVVSGSLD--------------------------  298 (445)
T ss_dssp             CE-EEEETTSCEEEEEGGGTE--EEEEEC-CCSSCEEEEEE--CSSEEEEEETT--------------------------
T ss_pred             EE-EEEcCCCEEEEEECCCCc--EeEEec-CCCCceEEEEE--CCCEEEEEeCC--------------------------
Confidence            55 445567889999975321  111121 11222233455  56655544432                          


Q ss_pred             CCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCC
Q 016199          328 MPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       328 ~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                              +.|..+|. +++.+..+.... ..+..+..+++.|+.|+ .+..|..+|+.....
T Consensus       299 --------~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~  351 (445)
T 2ovr_B          299 --------TSIRVWDVETGNCIHTLTGHQ-SLTSGMELKDNILVSGN-ADSTVKIWDIKTGQC  351 (445)
T ss_dssp             --------SCEEEEETTTCCEEEEECCCC-SCEEEEEEETTEEEEEE-TTSCEEEEETTTCCE
T ss_pred             --------CeEEEEECCCCCEEEEEcCCc-ccEEEEEEeCCEEEEEe-CCCeEEEEECCCCcE
Confidence                    34777775 567776665433 23444455667777775 455777888765443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.97  E-value=0.00034  Score=73.48  Aligned_cols=199  Identities=10%  Similarity=0.088  Sum_probs=113.5

Q ss_pred             CCCceEEEecC--CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCC--CCCCCceEEEEEeCCCceEE
Q 016199           83 KGPEDLLYDAH--SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANS--DPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~--g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~--G~~~~~~~L~v~~~~~gl~~  158 (393)
                      ..-.++++.++  ++.|.+++.+|.|..|+..++... ....+.........+++.++  |     +.++++...+.|..
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~-----~~l~sgs~dg~I~v  127 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYG-----PLLLVASSDGKVSV  127 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGC-----SEEEEEETTSEEEE
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEECCCCCC-----CEEEEEeCCCcEEE
Confidence            34456888877  888999999999999998765300 02233333456789999987  7     24566655555777


Q ss_pred             EeCCc---eEEEeeccCCccccccccEEEcC-------------CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          159 ISGNS---TVLLTDEAEGQKFKLTDGVDVAD-------------DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~-------------dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                      +|...   .....  ..+.. ..+..+.+.+             +|.++++.                 ...|.|..||.
T Consensus       128 wdl~~~~~~~~~~--~~~~~-~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg-----------------s~dg~I~iwd~  187 (753)
T 3jro_A          128 VEFKENGTTSPII--IDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTG-----------------GADNLVKIWKY  187 (753)
T ss_dssp             EECCSSSCCCCEE--EECCS-SCEEEEEECCCC---------CGGGCCEEEE-----------------ETTSCEEEEEE
T ss_pred             EEeecCCCcceeE--eecCC-CceEEEEecCcccccccccccCCCCCEEEEE-----------------ECCCeEEEEec
Confidence            77543   11111  11111 2355777777             46444442                 23456777776


Q ss_pred             CCCe----EE-EEecCccCCCcEEEcCC---CCEEEEEeCCCCeEEEEEecCCCCcceeeee--ccCCCCCCeEEECCCC
Q 016199          223 VTKE----TK-VLVSDLYFANGVVLSPD---QTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--ETLPGLPDNIRYDGEG  292 (393)
Q Consensus       223 ~t~~----~~-~~~~~l~~~ngi~~s~d---g~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~~l~g~P~~i~~d~~G  292 (393)
                      .++.    .. .+.........++++|+   + .++++....+.|..|++............  ....+....++++++|
T Consensus       188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg  266 (753)
T 3jro_A          188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG  266 (753)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT
T ss_pred             cCCcccceeeeeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC
Confidence            5442    11 12222345678999999   6 45566667889999998643211111111  1123345568899999


Q ss_pred             CEEEEE-ecCcchhhhh
Q 016199          293 HYLIAL-ATEFSTYWDL  308 (393)
Q Consensus       293 ~lwva~-~~~r~~~~~~  308 (393)
                      ++.++. ..+.-.+|++
T Consensus       267 ~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          267 NVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             CCEEEECSSSCEECCBC
T ss_pred             CEEEEEcCCCEEEEEec
Confidence            865544 3333334443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.95  E-value=0.0023  Score=66.97  Aligned_cols=186  Identities=11%  Similarity=0.107  Sum_probs=98.9

Q ss_pred             eEEEecCCCEEEEEe-cCC----eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc------
Q 016199           87 DLLYDAHSKLIYTGC-EDG----WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG------  155 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~-~~g----~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g------  155 (393)
                      +++++|||+.|.++. .+|    .|+.++.+++.    ............++++.+|.      .|+++.....      
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~----~~~~~~~~~~~~~~~wspD~------~l~~~~~~~~~~~~~~  236 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK----PLADELKWVKFSGLAWLGND------ALLYSRFAEPKEGQAF  236 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC----EEEEEEEEEESCCCEESTTS------EEEEEECCCC------
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC----CCCccCCCceeccEEEECCC------EEEEEEecCccccccc
Confidence            478999999665443 333    48999988775    32211101112467777764      7777654322      


Q ss_pred             --------eEEEeCCc-e--EEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199          156 --------LLKISGNS-T--VLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV  223 (393)
Q Consensus       156 --------l~~id~~g-~--~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~  223 (393)
                              |++++..+ .  ..+.....+.+ .+..++.+++||+ |.++....             ......|+.+|.+
T Consensus       237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~  302 (741)
T 1yr2_A          237 QALNYNQTVWLHRLGTPQSADQPVFATPELP-KRGHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVT  302 (741)
T ss_dssp             --CCCCCEEEEEETTSCGGGCEEEECCTTCT-TCEEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCchhCEEEeccCCCC-eEEEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECC
Confidence                    66666543 1  12221111111 1245778999995 55543110             0124478999887


Q ss_pred             CC--e-EEEEecCccCCCcEEEcCCCCEEEEEeCC---CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          224 TK--E-TKVLVSDLYFANGVVLSPDQTHLVYCETS---MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       224 t~--~-~~~~~~~l~~~ngi~~s~dg~~l~v~~~~---~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                      ++  + .+.+.......... +++||+.+|+....   +.+|+++++++.. +..+.+.........++..+ ++.+++.
T Consensus       303 ~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~  379 (741)
T 1yr2_A          303 NGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFAS  379 (741)
T ss_dssp             TTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred             CCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence            76  4 55555433222222 45889888877542   4679999986432 23333332222222345555 4455554


Q ss_pred             Ee
Q 016199          298 LA  299 (393)
Q Consensus       298 ~~  299 (393)
                      ..
T Consensus       380 ~~  381 (741)
T 1yr2_A          380 YI  381 (741)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.94  E-value=0.00062  Score=67.36  Aligned_cols=203  Identities=13%  Similarity=0.111  Sum_probs=102.5

Q ss_pred             cCCCceEEEecC---CCEEEEEec---C----------CeEEEEEcCCCC---Cc----ceeeeeecC--CCceeeeEEC
Q 016199           82 LKGPEDLLYDAH---SKLIYTGCE---D----------GWIKRVTLNDSP---AD----SLVHNWINT--GGRPLGIAFA  136 (393)
Q Consensus        82 ~~~Pe~ia~d~~---g~~L~~~~~---~----------g~I~~~~~~~~~---~~----~~~~~~~~~--~~~p~gl~~d  136 (393)
                      ..++-+|+++|+   .+.||+...   +          .+|.|+......   .+    ..+..+...  ......|+|+
T Consensus        68 e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg  147 (463)
T 2wg3_C           68 ERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG  147 (463)
T ss_dssp             CCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC
T ss_pred             CCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC
Confidence            356778999985   336887643   1          278888875421   11    011111111  1234679999


Q ss_pred             CCCCCCCceEEEEEeCCC------------------ceEEEeCCce------EEEeec-cC----------Ccccccccc
Q 016199          137 NSDPDADRITMIVADAYK------------------GLLKISGNST------VLLTDE-AE----------GQKFKLTDG  181 (393)
Q Consensus       137 ~~G~~~~~~~L~v~~~~~------------------gl~~id~~g~------~~l~~~-~~----------g~~~~~~~~  181 (393)
                      +||      .|||+....                  .|+|++++|.      .+..++ +.          ...++++.+
T Consensus       148 pDG------~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~g  221 (463)
T 2wg3_C          148 PDG------FLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGR  221 (463)
T ss_dssp             TTS------CEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCB
T ss_pred             CCC------cEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcce
Confidence            999      999985432                  2888888761      111110 00          012467899


Q ss_pred             EEEcCC-----C--cEEEEeCCCccchhhheehhcccCCCc---EEEEEeCCCCeEEEEecCccCCCcEEEcCCC-----
Q 016199          182 VDVADD-----G--MIYFTDASNKYYLREYILDIFEGKPNG---RLLSFDPVTKETKVLVSDLYFANGVVLSPDQ-----  246 (393)
Q Consensus       182 l~~d~d-----G--~l~~td~~~~~~~~~~~~~~~e~~~~g---~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg-----  246 (393)
                      +++|+.     |  .+|.+|........+.+..+.++...|   -++.|.+..         -.-|.|+++....     
T Consensus       222 la~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~---------g~Ap~G~~~Y~G~~fP~~  292 (463)
T 2wg3_C          222 CAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFS---------NGPLVGGFVYRGCQSERL  292 (463)
T ss_dssp             EEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSCCCCEECCC-------------CEEEEEECCCSSCTTT
T ss_pred             EEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCC---------CccccceEEEeCCCChhh
Confidence            999996     5  456677411100011111111111111   122222110         0234555553221     


Q ss_pred             -CEEEEEeCCCCeEEEEEecCCCCc-ceeeee--------ccCCCCCCeEEECCCCCEEEEEec
Q 016199          247 -THLVYCETSMRRCRKFYIKGKNAG-RVEKFI--------ETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       247 -~~l~v~~~~~~ri~~~~~~g~~~~-~~~~~~--------~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                       ..+++++.. ++|+++.+++.... +.+.+.        ....+.|..+.+++||.|||+...
T Consensus       293 ~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~  355 (463)
T 2wg3_C          293 YGSYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSS  355 (463)
T ss_dssp             TTCEEEEETT-SCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEES
T ss_pred             cceEEEecCC-CcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEecc
Confidence             136677765 88999988654322 222221        112356888999999999999863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.93  E-value=0.004  Score=59.96  Aligned_cols=157  Identities=7%  Similarity=0.042  Sum_probs=92.1

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcC---CCCCcc-----eeeeee--c--CCCceeeeE--ECCCCCCCCceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLN---DSPADS-----LVHNWI--N--TGGRPLGIA--FANSDPDADRITMI  148 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~---~~~~~~-----~~~~~~--~--~~~~p~gl~--~d~~G~~~~~~~L~  148 (393)
                      ....++++.++++.|.+++.+|.|..|+.+   .+....     .+..+.  .  .......+.  +.+++     ..|+
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~  186 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-----SLLV  186 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-----EEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-----CEEE
Confidence            456679999999989999999999888874   222000     001110  0  122233444  44566     1345


Q ss_pred             EEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC
Q 016199          149 VADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK  225 (393)
Q Consensus       149 v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~  225 (393)
                      .+...+.|..+|...   ...+...   .....+..++++++|.+.++-                 ...+.|..||..++
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~-----------------~~dg~i~iwd~~~~  246 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENS---PRHGAVSSICIDEECCVLILG-----------------TTRGIIDIWDIRFN  246 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECC---GGGCCEEEEEECTTSCEEEEE-----------------ETTSCEEEEETTTT
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccC---CCCCceEEEEECCCCCEEEEE-----------------cCCCeEEEEEcCCc
Confidence            554455677788754   2222110   012346789999999766653                 33567899998876


Q ss_pred             eEEEEe--cCccCCCcEEEc----CCCCEEEEEeCCCCeEEEEEec
Q 016199          226 ETKVLV--SDLYFANGVVLS----PDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       226 ~~~~~~--~~l~~~ngi~~s----~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +.....  ........++++    +|+ .++++.+..+.|..|++.
T Consensus       247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          247 VLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             EEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETT
T ss_pred             cEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcC
Confidence            654322  222234566444    455 466777778889999985

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.91  E-value=0.001  Score=69.05  Aligned_cols=187  Identities=9%  Similarity=0.000  Sum_probs=100.6

Q ss_pred             ceEEEecCCCEEE-EEecC----CeEEEEEcCCCCCcceeeeeecCCC-ceeeeEECCCCCCCCceEEEEEeCCCc----
Q 016199           86 EDLLYDAHSKLIY-TGCED----GWIKRVTLNDSPADSLVHNWINTGG-RPLGIAFANSDPDADRITMIVADAYKG----  155 (393)
Q Consensus        86 e~ia~d~~g~~L~-~~~~~----g~I~~~~~~~~~~~~~~~~~~~~~~-~p~gl~~d~~G~~~~~~~L~v~~~~~g----  155 (393)
                      .+++++|||+.|. ..+.+    ..|+.++.+++.    ......... ...++++.+||     +.|+.+.....    
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~----~~~~~~~~~~~~~~~~wspDg-----~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE----WSKVDVIEGGKYATPKWTPDS-----KGFYYEWLPTDPSIK  194 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC----BCSSCCBSCCTTCCCEECTTS-----SEEEEEECCCCTTSC
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC----CcCCcccCcccccceEEecCC-----CEEEEEEecCCCCCc
Confidence            3578999999654 33333    369999998765    220001111 12678999998     24555544332    


Q ss_pred             ---------eEEEeCCc-e--EEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          156 ---------LLKISGNS-T--VLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       156 ---------l~~id~~g-~--~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                               |++++..+ .  ..+.....+.+ ....++.+++||. |.++...              ...+..|+.++.
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~--------------~~~~~~l~~~~~  259 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDP-TTFLQSDLSRDGKYLFVYILR--------------GWSENDVYWKRP  259 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCT-TCEEEEEECTTSCCEEEEEEE--------------TTTEEEEEEECT
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCC-EEEEEEEECCCCCEEEEEEeC--------------CCCceEEEEEcC
Confidence                     88887654 2  12222211111 2345788999994 5555311              012346888887


Q ss_pred             CCCeEEEEecCccCCCcEEEcCCCCEEEEEeC---CCCeEEEEEecCCCCcceeeeeccCCC-CCCeEEECCCCCEEEEE
Q 016199          223 VTKETKVLVSDLYFANGVVLSPDQTHLVYCET---SMRRCRKFYIKGKNAGRVEKFIETLPG-LPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       223 ~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~---~~~ri~~~~~~g~~~~~~~~~~~~l~g-~P~~i~~d~~G~lwva~  298 (393)
                      .+++.+.+............ +||+ +|+...   .+.+|+++++++......+.+....+. ...+++++ ++.+++..
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~  336 (695)
T 2bkl_A          260 GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEY  336 (695)
T ss_dssp             TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEE
T ss_pred             CCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEE
Confidence            66666666544332333333 6887 777654   357899999864321112333322211 12345665 55565554


Q ss_pred             e
Q 016199          299 A  299 (393)
Q Consensus       299 ~  299 (393)
                      .
T Consensus       337 ~  337 (695)
T 2bkl_A          337 L  337 (695)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.90  E-value=0.0077  Score=58.28  Aligned_cols=225  Identities=13%  Similarity=0.123  Sum_probs=128.2

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      ..+++++  ++.+++++.+|.|..|+.+++.   ....+.........+.+++ .      .++.+...+.|..+|... 
T Consensus       162 v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~-~------~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          162 VWSSQMR--DNIIISGSTDRTLKVWNAETGE---CIHTLYGHTSTVRCMHLHE-K------RVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEET-T------EEEEEETTSEEEEEESSSC
T ss_pred             EEEEEec--CCEEEEEeCCCeEEEEECCcCc---EEEEECCCCCcEEEEEecC-C------EEEEEeCCCEEEEEECCCC
Confidence            3456665  4578999999999999987654   1333333344567788863 4      677776666688888654 


Q ss_pred             --eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCc
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANG  239 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ng  239 (393)
                        ...+.    +. ...+..+.+  +|. ++.+                  ...+.|..||..+++...... .......
T Consensus       230 ~~~~~~~----~~-~~~v~~~~~--~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  284 (445)
T 2ovr_B          230 QCLHVLM----GH-VAAVRCVQY--DGRRVVSG------------------AYDFMVKVWDPETETCLHTLQGHTNRVYS  284 (445)
T ss_dssp             CEEEEEE----CC-SSCEEEEEE--CSSCEEEE------------------ETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred             cEEEEEc----CC-cccEEEEEE--CCCEEEEE------------------cCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence              22221    11 122345555  454 4444                  235678889987765443332 2223344


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      +++  |++.++. ....+.|..|++...+  ....+. ........+..  +|++.++....                  
T Consensus       285 ~~~--~~~~l~~-~~~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d------------------  338 (445)
T 2ovr_B          285 LQF--DGIHVVS-GSLDTSIRVWDVETGN--CIHTLT-GHQSLTSGMEL--KDNILVSGNAD------------------  338 (445)
T ss_dssp             EEE--CSSEEEE-EETTSCEEEEETTTCC--EEEEEC-CCCSCEEEEEE--ETTEEEEEETT------------------
T ss_pred             EEE--CCCEEEE-EeCCCeEEEEECCCCC--EEEEEc-CCcccEEEEEE--eCCEEEEEeCC------------------
Confidence            555  7766554 4557889999985321  112221 22222233444  45655554432                  


Q ss_pred             hhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCC
Q 016199          320 GMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                                      +.|..+|. +++.+..+..+.  ...++.+..+++.|..|+ .+..|..+++.....
T Consensus       339 ----------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          339 ----------------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS-DDGTVKLWDLKTGEF  394 (445)
T ss_dssp             ----------------SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred             ----------------CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEe-CCCeEEEEECCCCce
Confidence                            34777775 577777776532  334455555556666665 556788888765543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.87  E-value=0.00073  Score=65.05  Aligned_cols=182  Identities=9%  Similarity=0.025  Sum_probs=104.4

Q ss_pred             CceEEEec-CCCEEEEEecCC----eEEEEEcCCCCCcceeeeeecC---C-----------CceeeeEECC---CCCCC
Q 016199           85 PEDLLYDA-HSKLIYTGCEDG----WIKRVTLNDSPADSLVHNWINT---G-----------GRPLGIAFAN---SDPDA  142 (393)
Q Consensus        85 Pe~ia~d~-~g~~L~~~~~~g----~I~~~~~~~~~~~~~~~~~~~~---~-----------~~p~gl~~d~---~G~~~  142 (393)
                      ..+|++|+ +.+.||+++..|    +|++.+..+..    ++.+...   .           ....+|++++   .+   
T Consensus        57 v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~t----W~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~---  129 (394)
T 3b7f_A           57 IHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGN----WTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG---  129 (394)
T ss_dssp             EEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSC----CEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT---
T ss_pred             eEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCC----ceECCccccCCCcccccccccccceeEEEeCCCCCCC---
Confidence            46788998 233599998877    78887544443    4443211   0           1234678885   56   


Q ss_pred             CceEEEEEeCCCceEEEeCCc--eEEEeecc--C------------CccccccccEEEcC--CCcEEEEeCCCccchhhh
Q 016199          143 DRITMIVADAYKGLLKISGNS--TVLLTDEA--E------------GQKFKLTDGVDVAD--DGMIYFTDASNKYYLREY  204 (393)
Q Consensus       143 ~~~~L~v~~~~~gl~~id~~g--~~~l~~~~--~------------g~~~~~~~~l~~d~--dG~l~~td~~~~~~~~~~  204 (393)
                         .+|++....||++.+..|  -+.+....  .            +.....++.|.+++  .+.||++.          
T Consensus       130 ---~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~----------  196 (394)
T 3b7f_A          130 ---TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGM----------  196 (394)
T ss_dssp             ---CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEE----------
T ss_pred             ---EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEE----------
Confidence               899987778899887665  22222110  0            11112346788887  36899984          


Q ss_pred             eehhcccCCCcEEEEEeCCCCeEEEEecCc-------------cCCCcEEEcCC-CCEEEEEeCCCCeEEEEEecCCCCc
Q 016199          205 ILDIFEGKPNGRLLSFDPVTKETKVLVSDL-------------YFANGVVLSPD-QTHLVYCETSMRRCRKFYIKGKNAG  270 (393)
Q Consensus       205 ~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l-------------~~~ngi~~s~d-g~~l~v~~~~~~ri~~~~~~g~~~~  270 (393)
                              ..++|++.+-.++..+.+....             .....|+++++ ...+|+..  .+.|++.+-.|.   
T Consensus       197 --------~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~---  263 (394)
T 3b7f_A          197 --------SSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREG---  263 (394)
T ss_dssp             --------ETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTT---
T ss_pred             --------CCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCC---
Confidence                    2356888876656666553321             11346778775 35788865  367888763332   


Q ss_pred             ceeeeeccCCC----CCCeEEEC--CCCCEEEEEe
Q 016199          271 RVEKFIETLPG----LPDNIRYD--GEGHYLIALA  299 (393)
Q Consensus       271 ~~~~~~~~l~g----~P~~i~~d--~~G~lwva~~  299 (393)
                      ..+.+...++.    +...+++|  ..+.+|++..
T Consensus       264 tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          264 VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             cceECCCCCCCCCccceEEEEECCCCCCEEEEEec
Confidence            12222212221    11236676  4578999863

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.85  E-value=0.0079  Score=62.39  Aligned_cols=238  Identities=14%  Similarity=0.132  Sum_probs=121.9

Q ss_pred             eEEEecCCCEE-EEEecCC----eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-------
Q 016199           87 DLLYDAHSKLI-YTGCEDG----WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-------  154 (393)
Q Consensus        87 ~ia~d~~g~~L-~~~~~~g----~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-------  154 (393)
                      +++++|||+.| |..+..|    .|+.++.++++    ..........-.++++. ||     +.|+++....       
T Consensus       133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~----~~~~~~~~~k~~~~~Ws-Dg-----~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ----PLETPLKDVKFSGISWL-GN-----EGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS----EEEEEEEEEESCCCEEE-TT-----TEEEEEESSCCC-----
T ss_pred             EEEECCCCCEEEEEEecCCCceEEEEEEECCCCC----CCccccCCceeccEEEe-CC-----CEEEEEEecCccccccc
Confidence            46899999855 4444333    58888988765    22211101112456676 66     2566664432       


Q ss_pred             ------ceEEEeCCc---e-EEEeeccCC-ccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          155 ------GLLKISGNS---T-VLLTDEAEG-QKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       155 ------gl~~id~~g---~-~~l~~~~~g-~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                            .|++++..+   . ..+... .. .+ .+..++.+++||. |+++....              .....|+.+|.
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~-~~~~~~~~SpDg~~l~~~~~~~--------------~~~~~i~~~d~  266 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQH-HRYVGATVTEDDRFLLISAANS--------------TSGNRLYVKDL  266 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESC-SGGGC-CSEEEEEECTTSCEEEEEEESS--------------SSCCEEEEEET
T ss_pred             ccCCCcEEEEEECCCCcccceEEEec-CCCCC-eEEEEEEEcCCCCEEEEEEccC--------------CCCcEEEEEEC
Confidence                  266666433   1 222211 11 11 1234678899995 55553211              12347899987


Q ss_pred             CCC--eEEEEecCccCCCcEEEcCCCCEEEEEeCC---CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          223 VTK--ETKVLVSDLYFANGVVLSPDQTHLVYCETS---MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       223 ~t~--~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~---~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                      +++  +.+.+......... .++++|+.+|+....   +.+|+++++++......+.+......   .+.++.+|+..+.
T Consensus       267 ~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~s~~g~~lv~  342 (693)
T 3iuj_A          267 SQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ---VLTVHSGSGYLFA  342 (693)
T ss_dssp             TSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS---CEEEEEETTEEEE
T ss_pred             CCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC---EEEEEEECCEEEE
Confidence            655  45555443222112 267788878776543   46899999875432223344422222   2244555664433


Q ss_pred             Ee-cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEE--EeCCEEEEEec
Q 016199          298 LA-TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAI--KIGDHLYCGSV  374 (393)
Q Consensus       298 ~~-~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~--~~~g~Lyigs~  374 (393)
                      .. ...                                ...|..++.+|+..+.+..+....+..+.  .+++.|++..-
T Consensus       343 ~~~~~g--------------------------------~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s  390 (693)
T 3iuj_A          343 EYMVDA--------------------------------TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFE  390 (693)
T ss_dssp             EEEETT--------------------------------EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred             EEEECC--------------------------------eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEec
Confidence            22 110                                02477788888777666544322221111  13455665532


Q ss_pred             C---CCeEEEEeCCC
Q 016199          375 H---HRGILHLDVNQ  386 (393)
Q Consensus       375 ~---~~~i~~~~~~~  386 (393)
                      .   ...|..+|++.
T Consensus       391 s~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          391 NYAQPPTLYRFEPKS  405 (693)
T ss_dssp             CSSSCCEEEEECTTT
T ss_pred             CCCCCCEEEEEECCC
Confidence            1   25677777644

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.85  E-value=0.018  Score=55.28  Aligned_cols=237  Identities=10%  Similarity=0.071  Sum_probs=126.3

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec---CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN---TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~---~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      .|.|+++ +.|-+|. ++.|+.|+..++.    ......   ......++++.++|     +.|.+|...+.|..+|.+.
T Consensus       110 ~l~wS~~-n~lAvgl-d~tV~lWd~~tg~----~~~~~~~~~~~~~V~sv~fspdg-----~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          110 LVDWSSG-NVLAVAL-DNSVYLWSASSGD----ILQLLQMEQPGEYISSVAWIKEG-----NYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             CEEECTT-SEEEEEE-TTEEEEEETTTCC----EEEEEECCSTTCCEEEEEECTTS-----SEEEEEETTSCEEEEETTT
T ss_pred             eEEECCC-CEEEEEe-CCEEEEEECCCCC----EEEEEEecCCCCcEEEEEECCCC-----CEEEEEECCCeEEEEEcCC
Confidence            4788875 4666665 8899999998765    433222   23347899999999     2455665556677788755


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe--EEEEecCccCCCcEE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE--TKVLVSDLYFANGVV  241 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~--~~~~~~~l~~~ngi~  241 (393)
                      .+.+. ...+.. ..+..  +..++.+.++-                 ...+.+..+|..+..  ...+........++.
T Consensus       179 ~~~~~-~~~~h~-~~v~~--~s~~~~~l~sg-----------------s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~  237 (420)
T 4gga_A          179 QKRLR-NMTSHS-ARVGS--LSWNSYILSSG-----------------SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  237 (420)
T ss_dssp             TEEEE-EECCCS-SCEEE--EEEETTEEEEE-----------------ETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             CcEEE-EEeCCC-CceEE--EeeCCCEEEEE-----------------eCCCceeEeeecccceeeEEecccccceeeee
Confidence            11221 111211 11223  33455555542                 234567777765432  333444455567888


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCCCCcc--eeeeeccCCCCCCeEEECCCCCEEEEEe-cCcchhhhhhhcCcchhhh
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGR--VEKFIETLPGLPDNIRYDGEGHYLIALA-TEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~--~~~~~~~l~g~P~~i~~d~~G~lwva~~-~~r~~~~~~~~~~~~~r~~  318 (393)
                      ++++++.+. +....+.+..++....+...  ...+. ...+....+++.+.+.-.+++. +..+               
T Consensus       238 ~~~~g~~l~-s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~gs~D---------------  300 (420)
T 4gga_A          238 WAPDGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSD---------------  300 (420)
T ss_dssp             ECTTSSEEE-EEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEECTTT---------------
T ss_pred             ecCCCCeee-eeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEeecCC---------------
Confidence            999997654 45567888888875322111  11111 1222234466666654333332 2111               


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEE-EeCCEEEEEec-CCCeEEEEeCCCCCCC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAI-KIGDHLYCGSV-HHRGILHLDVNQHPAR  390 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~-~~~g~Lyigs~-~~~~i~~~~~~~~~~~  390 (393)
                                       +.|..+|. .|+....+.... ...+... .+++.|..++- ....|..+|+.....+
T Consensus       301 -----------------~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v  357 (420)
T 4gga_A          301 -----------------RHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV  357 (420)
T ss_dssp             -----------------CEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             -----------------CEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence                             34555564 455555555432 2222222 34466666643 3456777776555443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.84  E-value=0.0012  Score=61.19  Aligned_cols=205  Identities=8%  Similarity=0.029  Sum_probs=103.0

Q ss_pred             CCceEEEec--CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCC--CCCCCceEEEEEeCC-CceEE
Q 016199           84 GPEDLLYDA--HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANS--DPDADRITMIVADAY-KGLLK  158 (393)
Q Consensus        84 ~Pe~ia~d~--~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~--G~~~~~~~L~v~~~~-~gl~~  158 (393)
                      .-.++++.+  +++.|.+++.|+.|..|+...+... ....+.........+++.++  |      .++++... +.|..
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g------~~lasgs~D~~i~l  131 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYG------LILACGSSDGAISL  131 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTC------SCEEEECSSSCEEE
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCC------cEEEEEcCCCCEEE
Confidence            345678864  4777889999999999998764300 12222223455788999886  6      44444344 44555


Q ss_pred             EeCCc--eEEEeeccCCccccccccEEEcCCC---cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEE---
Q 016199          159 ISGNS--TVLLTDEAEGQKFKLTDGVDVADDG---MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKV---  229 (393)
Q Consensus       159 id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG---~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~---  229 (393)
                      ++..+  .........+.. ..++.+.+.+++   .+.....+..   ..+...+..+...+.|..+|..++ ....   
T Consensus       132 wd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  207 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPSGQK---PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK  207 (316)
T ss_dssp             EEECSSSCEEECCBTTSSS-SCBCCCEECCCCCC------CCSCC---CCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred             EecCCCCCcceeeeecccc-CCcceEEEccccCCccccccccccC---ccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence            56443  111111112211 234566666652   1100000000   000000111223445556665432 2222   


Q ss_pred             EecCccCCCcEEEcCCC---CEEEEEeCCCCeEEEEEecCCCCcc--eeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          230 LVSDLYFANGVVLSPDQ---THLVYCETSMRRCRKFYIKGKNAGR--VEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       230 ~~~~l~~~ngi~~s~dg---~~l~v~~~~~~ri~~~~~~g~~~~~--~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      +.......+.++++|++   ..++++.+..+.|..|+++....+.  ...+. ...+....++++++|++.++...
T Consensus       208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEES
T ss_pred             cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcC
Confidence            22223446789999986   2456777778999999986421111  11121 22233456788999987665543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.80  E-value=0.0096  Score=60.41  Aligned_cols=53  Identities=13%  Similarity=0.098  Sum_probs=35.6

Q ss_pred             CceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          335 SSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       335 ~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                      .+.|+.+|. +|++...+..+.......+...++.+|+++ ....|..+|.+...
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT-LDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC-TTSEEEEEETTTCC
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc-CCCeEEEEECCCCC
Confidence            467999996 588888776543222223345678999986 45688888876544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.78  E-value=0.0075  Score=58.30  Aligned_cols=146  Identities=15%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      ..++++  +++.|++++.+|.|..|+.+++.   ....+.........++++ ++      .++.+...+.|..+|... 
T Consensus       176 v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~l~~~-~~------~l~s~s~dg~i~vwd~~~~  243 (435)
T 1p22_A          176 VLCLQY--DERVIITGSSDSTVRVWDVNTGE---MLNTLIHHCEAVLHLRFN-NG------MMVTCSKDRSIAVWDMASP  243 (435)
T ss_dssp             EEEEEC--CSSEEEEEETTSCEEEEESSSCC---EEEEECCCCSCEEEEECC-TT------EEEEEETTSCEEEEECSSS
T ss_pred             EEEEEE--CCCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCcEEEEEEc-CC------EEEEeeCCCcEEEEeCCCC
Confidence            334555  67789999999999999987654   133333334556788886 45      688877666677787654 


Q ss_pred             -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVV  241 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~  241 (393)
                       .........+.. ..+..+.+  +|...++-                 ...+.|..||..+++...... .......++
T Consensus       244 ~~~~~~~~~~~~~-~~v~~~~~--~~~~l~s~-----------------~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  303 (435)
T 1p22_A          244 TDITLRRVLVGHR-AAVNVVDF--DDKYIVSA-----------------SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ  303 (435)
T ss_dssp             SCCEEEEEECCCS-SCEEEEEE--ETTEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             CCceeeeEecCCC-CcEEEEEe--CCCEEEEE-----------------eCCCeEEEEECCcCcEEEEEcCCCCcEEEEE
Confidence             111111111111 22445555  45444432                 345679999988776543322 222334444


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEec
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +  +++.+ ++....+.|..|++.
T Consensus       304 ~--~~~~l-~~g~~dg~i~iwd~~  324 (435)
T 1p22_A          304 Y--RDRLV-VSGSSDNTIRLWDIE  324 (435)
T ss_dssp             E--ETTEE-EEEETTSCEEEEETT
T ss_pred             e--CCCEE-EEEeCCCeEEEEECC
Confidence            4  55544 555568899999985

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.78  E-value=0.014  Score=59.10  Aligned_cols=41  Identities=20%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             ceEEEECC-CCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCC
Q 016199          336 SGVFIVDL-DGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHH  376 (393)
Q Consensus       336 ~~v~~~d~-~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~  376 (393)
                      +.|..+|. +|+++..+..+. ..........+|++|++...+
T Consensus       485 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          485 GYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECC
Confidence            56899995 699998888655 222222345789999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.76  E-value=0.0023  Score=59.52  Aligned_cols=138  Identities=7%  Similarity=0.027  Sum_probs=78.2

Q ss_pred             CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-----ceEEEeCCc--eEEEeeccCCcc
Q 016199          103 DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-----GLLKISGNS--TVLLTDEAEGQK  175 (393)
Q Consensus       103 ~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-----gl~~id~~g--~~~l~~~~~g~~  175 (393)
                      ++.|+.++.+++.    ...+    .....+++.++|     +.|.++....     .|+.++.++  ...+... .   
T Consensus        42 ~~~l~~~d~~~~~----~~~l----~~~~~~~~SpDg-----~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~---  104 (347)
T 2gop_A           42 ENTIVIENLKNNA----RRFI----ENATMPRISPDG-----KKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K---  104 (347)
T ss_dssp             EEEEEEEETTTCC----EEEE----ESCEEEEECTTS-----SEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S---
T ss_pred             cceEEEEeCCCCc----eEEc----ccCCCeEECCCC-----CEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C---
Confidence            3468888887765    4333    346778999999     2454443221     288888765  3333221 1   


Q ss_pred             ccccccEEEcCCCc-EEEEeCCCcc--c---hhhheehhccc-----CCCcEEEEEeCCCCeE-EEEecCccCCCcEEEc
Q 016199          176 FKLTDGVDVADDGM-IYFTDASNKY--Y---LREYILDIFEG-----KPNGRLLSFDPVTKET-KVLVSDLYFANGVVLS  243 (393)
Q Consensus       176 ~~~~~~l~~d~dG~-l~~td~~~~~--~---~~~~~~~~~e~-----~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~s  243 (393)
                       . +..+.+.|||. |+++......  .   .....+. ..+     .....|+.+|..+++. +.+...  ....++++
T Consensus       105 -~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~s  179 (347)
T 2gop_A          105 -N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW-FDDLGFFDGEKTTFWIFDTESEEVIEEFEKP--RFSSGIWH  179 (347)
T ss_dssp             -E-EEEEEECTTSSEEEEEEECCCC---------CCCC----------CEEEEEEEETTTTEEEEEEEEE--TTCEEEEE
T ss_pred             -C-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee-ecCcccccCccceEEEEECCCCeEEeeecCC--CcccccCC
Confidence             1 45788999994 6665311000  0   0000000 000     1135799999988887 555442  67789999


Q ss_pred             CCCCEEEEEeCC--------CCeEEEEE
Q 016199          244 PDQTHLVYCETS--------MRRCRKFY  263 (393)
Q Consensus       244 ~dg~~l~v~~~~--------~~ri~~~~  263 (393)
                      +|| .++.+...        ..+|+.++
T Consensus       180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          180 RDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             TTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             CCe-EEEEEecccccccccccccEEEeC
Confidence            999 66666432        33677777

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.76  E-value=0.011  Score=55.67  Aligned_cols=180  Identities=8%  Similarity=0.029  Sum_probs=100.3

Q ss_pred             CCceEEEecCCCEE-EEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           84 GPEDLLYDAHSKLI-YTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L-~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      +...+++.++++.+ .++..++.|..|+..++.   ....+. ......++++++++       +.++ ..+.+..++..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~---~~~~~~-~~~~v~~v~~~~~~-------~~~~-~~~~i~i~d~~  127 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ---DVSRIK-VDAPVKDLFLSREF-------IVVS-YGDVISVFKFG  127 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE---EEEEEE-CSSCEEEEEECSSE-------EEEE-ETTEEEEEESS
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc---EEEEEE-CCCceEEEEEcCCE-------EEEE-EcCEEEEEECC
Confidence            44557777777755 455667889999987654   123332 23467788888764       5555 34567777754


Q ss_pred             ce-EEEeeccCCcccccccc-EEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe--------------
Q 016199          163 ST-VLLTDEAEGQKFKLTDG-VDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE--------------  226 (393)
Q Consensus       163 g~-~~l~~~~~g~~~~~~~~-l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~--------------  226 (393)
                      .. +.+. ....     +.+ +++.+ ..+.++.                +...|.|..||..++.              
T Consensus       128 ~~~~~~~-~~~~-----~~~~~~~s~-~~la~~s----------------g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~  184 (355)
T 3vu4_A          128 NPWKRIT-DDIR-----FGGVCEFSN-GLLVYSN----------------EFNLGQIHITKLQSSGSATTQDQGVQQKAI  184 (355)
T ss_dssp             TTCCBSS-CCEE-----EEEEEEEET-TEEEEEE----------------SSCTTCEEEEECCC----------------
T ss_pred             CCceeeE-Eecc-----CCceEEEEc-cEEEEeC----------------CCcCcEEEEEECCCCCcccccccccccccc
Confidence            31 1111 1111     111 22333 3333321                1334667778876644              


Q ss_pred             ---EEEEecCccCCCcEEEcCCCCEEEEEeCCCCe-EEEEEecCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEecC
Q 016199          227 ---TKVLVSDLYFANGVVLSPDQTHLVYCETSMRR-CRKFYIKGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       227 ---~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r-i~~~~~~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                         ...+.......+.++++|||+.+ ++.+..+. |..|++...+  ....+..+ ..+....++++++|++.++....
T Consensus       185 ~p~~~~~~~h~~~v~~~~~s~~g~~l-~s~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          185 LGKGVLIKAHTNPIKMVRLNRKSDMV-ATCSQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWSTDGSKLAVVSDK  261 (355)
T ss_dssp             --CCEEECCCSSCEEEEEECTTSSEE-EEEETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred             CcccEEEEccCCceEEEEECCCCCEE-EEEeCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence               33444444556889999999755 55566777 8888875321  12223211 23334568899999977665543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.00053  Score=69.20  Aligned_cols=141  Identities=10%  Similarity=0.085  Sum_probs=92.5

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCC-cc---eeeeeec----CCCceeeeEECCCCCCCCceEEEEEeCCCce
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPA-DS---LVHNWIN----TGGRPLGIAFANSDPDADRITMIVADAYKGL  156 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~-~~---~~~~~~~----~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl  156 (393)
                      -.+++|+|||+.|++++.||.|..|+.+++.. ..   .+..+..    .......+++.++|       +..+..++.+
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-------Laass~D~tV  204 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-------LVAALSNNSV  204 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-------EEEEETTCCE
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-------EEEEeCCCeE
Confidence            45799999999999999999999999887631 00   0233311    12457899999876       5566567778


Q ss_pred             EEEeCCc-e-E-EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-c
Q 016199          157 LKISGNS-T-V-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-S  232 (393)
Q Consensus       157 ~~id~~g-~-~-~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~  232 (393)
                      ..++.++ . . ....-..+.. ..+.++++.  |...++.                  ..+.|..||..+++...+. .
T Consensus       205 rlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa------------------~~~tIkLWd~~~~~~~~~~~g  263 (588)
T 2j04_A          205 FSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLT------------------CPGYVHKIDLKNYSISSLKTG  263 (588)
T ss_dssp             EEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEE------------------CSSEEEEEETTTTEEEEEECS
T ss_pred             EEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEE------------------eCCeEEEEECCCCeEEEEEcC
Confidence            8888776 2 1 1110001211 346788887  4444442                  2468999999888875554 4


Q ss_pred             CccCCCcEEE--cCCCCEEEEEe
Q 016199          233 DLYFANGVVL--SPDQTHLVYCE  253 (393)
Q Consensus       233 ~l~~~ngi~~--s~dg~~l~v~~  253 (393)
                      .....+++++  ++|+..+.++.
T Consensus       264 h~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          264 SLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CCSCCCEEEETTCSSCEEEEECS
T ss_pred             CCceEEEEEeeeCCCCCEEEEEc
Confidence            4556788999  99996554443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.71  E-value=0.025  Score=54.56  Aligned_cols=219  Identities=14%  Similarity=0.115  Sum_probs=121.0

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---e
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS---T  164 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---~  164 (393)
                      .++..+++.+.+++.+|.|..|+..++.   ....+....+....++++ ..      .|+.+...+.|..+|.+.   .
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~-~~------~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQYD-ER------VIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCC---EEEEECCCSSCEEEEECC-SS------EEEEEETTSCEEEEESSSCCEE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCe---EEEEEcCCCCcEEEEEEC-CC------EEEEEcCCCeEEEEECCCCcEE
Confidence            3555678889999999999999987654   123333334556778873 23      567776666677888654   2


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE----EEecCccCCCcE
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK----VLVSDLYFANGV  240 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~----~~~~~l~~~ngi  240 (393)
                      ..+.    +. ...+..+.+++ +.++.+                  ...+.|..||..+++..    .+.......+.+
T Consensus       207 ~~~~----~h-~~~v~~l~~~~-~~l~s~------------------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  262 (435)
T 1p22_A          207 NTLI----HH-CEAVLHLRFNN-GMMVTC------------------SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  262 (435)
T ss_dssp             EEEC----CC-CSCEEEEECCT-TEEEEE------------------ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             EEEc----CC-CCcEEEEEEcC-CEEEEe------------------eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence            2221    11 12244555542 334443                  23467888887665432    222222334455


Q ss_pred             EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhh
Q 016199          241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSG  320 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~  320 (393)
                      ++  +++.++ +.+..+.|..|++...+  ....+. ...+....+..  +|++.++....                   
T Consensus       263 ~~--~~~~l~-s~~~dg~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~--~~~~l~~g~~d-------------------  315 (435)
T 1p22_A          263 DF--DDKYIV-SASGDRTIKVWNTSTCE--FVRTLN-GHKRGIACLQY--RDRLVVSGSSD-------------------  315 (435)
T ss_dssp             EE--ETTEEE-EEETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEE--ETTEEEEEETT-------------------
T ss_pred             Ee--CCCEEE-EEeCCCeEEEEECCcCc--EEEEEc-CCCCcEEEEEe--CCCEEEEEeCC-------------------
Confidence            55  666554 45567899999985321  122222 21222233444  45655544432                   


Q ss_pred             hhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          321 MVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       321 ~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                     +.|..+|. .|+.+..+.... ..+..+..++..|..|+ .+..|..+|+
T Consensus       316 ---------------g~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~l~sg~-~dg~i~vwd~  363 (435)
T 1p22_A          316 ---------------NTIRLWDIECGACLRVLEGHE-ELVRCIRFDNKRIVSGA-YDGKIKVWDL  363 (435)
T ss_dssp             ---------------SCEEEEETTTCCEEEEECCCS-SCEEEEECCSSEEEEEE-TTSCEEEEEH
T ss_pred             ---------------CeEEEEECCCCCEEEEEeCCc-CcEEEEEecCCEEEEEe-CCCcEEEEEC
Confidence                           34777775 477777766433 23344444556777776 4456776765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.70  E-value=0.00021  Score=74.16  Aligned_cols=136  Identities=7%  Similarity=-0.018  Sum_probs=85.2

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC----ceeeeEECCCCCCCCceEEEEEeC--------
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG----RPLGIAFANSDPDADRITMIVADA--------  152 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~----~p~gl~~d~~G~~~~~~~L~v~~~--------  152 (393)
                      +.++++.++|+ ++....++.|+.++.+++.    ...+.....    ....+++.+||     +.|.++..        
T Consensus        18 ~~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~SpDg-----~~la~~~~~~~~~~~s   87 (719)
T 1z68_A           18 TFFPNWISGQE-YLHQSADNNIVLYNIETGQ----SYTILSNRTMKSVNASNYGLSPDR-----QFVYLESDYSKLWRYS   87 (719)
T ss_dssp             CCCCEESSSSE-EEEECTTSCEEEEESSSCC----EEEEECHHHHHTTTCSEEEECTTS-----SEEEEEEEEEECSSSC
T ss_pred             CCccEECCCCe-EEEEcCCCCEEEEEcCCCc----EEEEEccccccccceeeEEECCCC-----CeEEEEecCceeEEee
Confidence            34678999996 5455568899999998775    444332111    26788999999     24555533        


Q ss_pred             -CCceEEEeCCceEEEe-eccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          153 -YKGLLKISGNSTVLLT-DEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       153 -~~gl~~id~~g~~~l~-~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                       ...|+.+|.++.+.+. ....    ..+..++++|||+ |.++.                   .+.|+.+|..+++...
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~  144 (719)
T 1z68_A           88 YTATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQ  144 (719)
T ss_dssp             EEEEEEEEETTTTEECCSSCCC----SSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEE
T ss_pred             cceEEEEEECCCCccccceecC----cccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEE
Confidence             2447777776511110 0111    2356789999994 55552                   2479999988776655


Q ss_pred             EecCc-------------------cCCCcEEEcCCCCEEEEEe
Q 016199          230 LVSDL-------------------YFANGVVLSPDQTHLVYCE  253 (393)
Q Consensus       230 ~~~~l-------------------~~~ngi~~s~dg~~l~v~~  253 (393)
                      +...-                   ....+++++|||+.|+++.
T Consensus       145 l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          145 ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence            43221                   1125899999999887764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.67  E-value=0.016  Score=54.51  Aligned_cols=229  Identities=5%  Similarity=-0.013  Sum_probs=118.7

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~  161 (393)
                      ..-.+++|++||+.|.+|+.+ ++..|+.+...    ...... ......+.+..++     +.+.++.. .+.|..+|.
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~----~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVA----HIMSQE-MRHLSKVRMLHRT-----NYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSS-EEEEEEETTEE----EEEEEE-CSCCCEEEECTTS-----SEEEEECSSTTEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEcCC-EEEEEecCCcc----eeeeee-cCCeEEEEEcCCC-----CEEEEEECCccEEEEEEC
Confidence            445679999999977666655 57778876542    111111 1223445555554     13434333 345677786


Q ss_pred             Cc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eE-EEEecCccCCC
Q 016199          162 NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ET-KVLVSDLYFAN  238 (393)
Q Consensus       162 ~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~-~~~~~~l~~~n  238 (393)
                      .. ..........    .+.++.+++++.+...                    .+.+..||..++ +. ..+..    +.
T Consensus        89 ~~~~~~~~~~~~~----~v~~v~~~~~~~~~~~--------------------~~~i~i~d~~~~~~~~~~~~~----~~  140 (355)
T 3vu4_A           89 VKKQDVSRIKVDA----PVKDLFLSREFIVVSY--------------------GDVISVFKFGNPWKRITDDIR----FG  140 (355)
T ss_dssp             TTTEEEEEEECSS----CEEEEEECSSEEEEEE--------------------TTEEEEEESSTTCCBSSCCEE----EE
T ss_pred             CCCcEEEEEECCC----ceEEEEEcCCEEEEEE--------------------cCEEEEEECCCCceeeEEecc----CC
Confidence            44 2111111111    2456777766533332                    246888887655 21 11111    33


Q ss_pred             c-EEEcCCCCEEEEE-eCCCCeEEEEEecCCCCc-------------c-eeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199          239 G-VVLSPDQTHLVYC-ETSMRRCRKFYIKGKNAG-------------R-VEKFIETLPGLPDNIRYDGEGHYLIALATEF  302 (393)
Q Consensus       239 g-i~~s~dg~~l~v~-~~~~~ri~~~~~~g~~~~-------------~-~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r  302 (393)
                      + .++++  +.+.++ ....+.|..|++...+..             . ...+. ...+....++++++|++.++.... 
T Consensus       141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d-  216 (355)
T 3vu4_A          141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQD-  216 (355)
T ss_dssp             EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETT-
T ss_pred             ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCC-
Confidence            3 34555  356555 677788999998642100             0 11121 222334568899999977766543 


Q ss_pred             chhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCce-EEEECC-CCcEEEEeeCC-CCCccEEE-EEeCCEEEEEecCCCe
Q 016199          303 STYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSG-VFIVDL-DGKPIAHYYDP-EMSLISSA-IKIGDHLYCGSVHHRG  378 (393)
Q Consensus       303 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-v~~~d~-~g~~~~~~~d~-~~~~~~~~-~~~~g~Lyigs~~~~~  378 (393)
                                                       +. |..+|. +|+.+..+... ....+..+ ...++.+.+.+-....
T Consensus       217 ---------------------------------~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          217 ---------------------------------GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             ---------------------------------CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             ---------------------------------CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence                                             33 666665 47777777632 22223332 3334443333335567


Q ss_pred             EEEEeCCCC
Q 016199          379 ILHLDVNQH  387 (393)
Q Consensus       379 i~~~~~~~~  387 (393)
                      |...++...
T Consensus       264 v~iw~~~~~  272 (355)
T 3vu4_A          264 LHVFEIFND  272 (355)
T ss_dssp             EEEEESSCC
T ss_pred             EEEEEccCC
Confidence            777777554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.62  E-value=0.021  Score=59.14  Aligned_cols=55  Identities=7%  Similarity=-0.030  Sum_probs=37.1

Q ss_pred             CceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCC
Q 016199          335 SSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPAR  390 (393)
Q Consensus       335 ~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~  390 (393)
                      .+.|..+|. .|+++..+..+....-..+...++.+|+++ ....+..+|++....+
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~-~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT-ADGRLVAYHAATGEKL  511 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC-CCCcEEEEECCCCcee
Confidence            367999997 588887776543212223455778999985 5678888998765543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.62  E-value=0.007  Score=57.22  Aligned_cols=183  Identities=13%  Similarity=0.184  Sum_probs=97.0

Q ss_pred             ecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC----CCCCCCce-EEEEEeCC--C-c--eEEE
Q 016199           91 DAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN----SDPDADRI-TMIVADAY--K-G--LLKI  159 (393)
Q Consensus        91 d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~----~G~~~~~~-~L~v~~~~--~-g--l~~i  159 (393)
                      ++... +++++ ..++++.|+.+++.    +..+ . .++++++.+-+    .|   .+. .+++.+..  . .  ++.+
T Consensus        37 dp~~s-~ii~t~k~~gL~Vydl~G~~----l~~~-~-~g~~nnVD~r~~~~l~g---~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           37 TPQNS-KLITTNKKSGLVVYSLDGKM----LHSY-N-TGKLNNVDIRYDFPLNG---KKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             CGGGC-EEEEEETTTEEEEEETTSCE----EEEE-C-CSCEEEEEEEEEEEETT---EEEEEEEEEECSTTCCEEEEEEE
T ss_pred             CCCcc-EEEEEcCCCCEEEEcCCCcE----EEEc-c-CCCcccEEEecccccCC---ceEeEEEEeCCCCCCCeEEEEEE
Confidence            34444 45555 46789999997654    4444 2 36777776544    12   000 13555443  2 2  4555


Q ss_pred             eCCc--eEEEeec--cCCccccccccEEE--cCC-Cc--EEEEeCCCccchhhheehhcccCCCcEEEEEeC---CCCeE
Q 016199          160 SGNS--TVLLTDE--AEGQKFKLTDGVDV--ADD-GM--IYFTDASNKYYLREYILDIFEGKPNGRLLSFDP---VTKET  227 (393)
Q Consensus       160 d~~g--~~~l~~~--~~g~~~~~~~~l~~--d~d-G~--l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~---~t~~~  227 (393)
                      |++.  ++.+...  .-+.....+.+++.  ++. |.  +|+++                  ..|++..|+.   ..++.
T Consensus       107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~------------------k~G~~~q~~l~~~~~g~~  168 (355)
T 3amr_A          107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG------------------KEGEFEQYELKADKNGYI  168 (355)
T ss_dssp             CTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC------------------SSSEEEEEEEEECTTSCE
T ss_pred             CCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC------------------CCCeEEEEEEEeCCCCcc
Confidence            6544  3333111  00122356788888  764 54  55553                  2356655443   22322


Q ss_pred             E-EEecC---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee--e--ccCCCCCCeEEE--CCCCC-EEE
Q 016199          228 K-VLVSD---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF--I--ETLPGLPDNIRY--DGEGH-YLI  296 (393)
Q Consensus       228 ~-~~~~~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~--~--~~l~g~P~~i~~--d~~G~-lwv  296 (393)
                      + .+.+.   -..+-|+.++++...||+++.. ..|++|+.+.....+.+.+  .  ..+..-+.||++  .++|+ +++
T Consensus       169 ~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          169 SGKKVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             cceEEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence            1 11121   2357789999888899999987 5699999653321111111  1  112223678887  45555 666


Q ss_pred             EEecCc
Q 016199          297 ALATEF  302 (393)
Q Consensus       297 a~~~~r  302 (393)
                      +...+.
T Consensus       248 vSsQG~  253 (355)
T 3amr_A          248 ASSQGN  253 (355)
T ss_dssp             EEEGGG
T ss_pred             EEcCCC
Confidence            655443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.0016  Score=65.49  Aligned_cols=185  Identities=13%  Similarity=0.025  Sum_probs=109.7

Q ss_pred             CCceEEEecC------CCEEEEEecCCeEEEEEcCCCCCcc--------eeeeeecCCCceeeeEECCCCCCCCceEEEE
Q 016199           84 GPEDLLYDAH------SKLIYTGCEDGWIKRVTLNDSPADS--------LVHNWINTGGRPLGIAFANSDPDADRITMIV  149 (393)
Q Consensus        84 ~Pe~ia~d~~------g~~L~~~~~~g~I~~~~~~~~~~~~--------~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v  149 (393)
                      ...+++|.|+      ++.|.+++.||.|..|+...+....        ....+........++++.+++      .|..
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~------~las  282 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT------TVVC  282 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS------EEEE
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC------eEEE
Confidence            3556888886      4677778889999999987542100        001122223456789998877      8888


Q ss_pred             EeCCCceEEEeCCc--e--EEEeeccCCccccccccE--EEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          150 ADAYKGLLKISGNS--T--VLLTDEAEGQKFKLTDGV--DVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       150 ~~~~~gl~~id~~g--~--~~l~~~~~g~~~~~~~~l--~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                      |...+.|..+|.+.  .  ..+.    +. ...+.+|  ...++| .++++.                 +..+.|..+|.
T Consensus       283 gs~DgtV~lWD~~~~~~~~~~~~----~H-~~~V~sv~~~~s~~g~~~laS~-----------------S~D~tvklWD~  340 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPEVPSFYDQ----VH-DSYILSVSTAYSDFEDTVVSTV-----------------AVDGYFYIFNP  340 (524)
T ss_dssp             EETTSEEEEEETTBCSSCSEEEE----CS-SSCEEEEEEECCTTSCCEEEEE-----------------ETTSEEEEECG
T ss_pred             EeCCCEEEEEECCCCCCceEEee----cc-cccEEEEEEEcCCCCCeEEEEe-----------------ccCCeEEEEEC
Confidence            86666677778753  1  1221    11 1235566  456777 776663                 33567888887


Q ss_pred             CCCeEE-EEecCc--cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          223 VTKETK-VLVSDL--YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       223 ~t~~~~-~~~~~l--~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+++.. .+....  .....++++||++. +++....+.|..|++....  ....+. ...+....++++++|.+.++..
T Consensus       341 ~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~--~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          341 KDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAF--AVHPLV-SRETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             GGHHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTT--CCEEEE-ECSSCEEEEECCSSCCBCEEEE
T ss_pred             CCCCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccc--cceeee-cCCCceEEEEeCCCCCeEEEEE
Confidence            654321 121111  12467999999975 5666667788888875321  112232 2223345688889998665544


Q ss_pred             c
Q 016199          300 T  300 (393)
Q Consensus       300 ~  300 (393)
                      .
T Consensus       417 ~  417 (524)
T 2j04_B          417 A  417 (524)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.0057  Score=65.59  Aligned_cols=151  Identities=7%  Similarity=-0.032  Sum_probs=99.5

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      -.+++|.+ |+.|.+++.++.|..|+.+++.   ....+. ..+....++++++|     +.|+++...+.|..+|.++ 
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~---~~~~~~-~~~~V~~v~~sp~g-----~~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQK---VLTTVF-VPGKITSIDTDASL-----DWMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCS---EEEEEE-CSSCEEEEECCTTC-----SEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCc---EEEEEc-CCCCEEEEEECCCC-----CEEEEEcCCCcEEEEECCCC
Confidence            45689999 7778888999999999998654   133343 23567899999998     2567776666688888765 


Q ss_pred             -eEEEe--------eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          164 -TVLLT--------DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       164 -~~~l~--------~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                       .....        ....+. ...+..++++|++ .++++-                 ...+.+ .||..+++.......
T Consensus       131 ~~~~~~i~~~~~~~~~~~~h-~~~V~sl~~sp~~~~~l~~g-----------------~~dg~v-lWd~~~~~~~~~~~~  191 (902)
T 2oaj_A          131 QLSSFKLDNLQKSSFFPAAR-LSPIVSIQWNPRDIGTVLIS-----------------YEYVTL-TYSLVENEIKQSFIY  191 (902)
T ss_dssp             EEEEEEECCHHHHHTCSSSC-CCCCCEEEEETTEEEEEEEE-----------------CSSCEE-EEETTTTEEEEEECC
T ss_pred             ccccceeccccccccccccC-CCCeEEEEEccCCCCEEEEE-----------------eCCCcE-EEECCCCceEEEEec
Confidence             21111        011111 2346789999964 443332                 345678 899887765433221


Q ss_pred             c-------------------cCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          234 L-------------------YFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       234 l-------------------~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      -                   ...+.++++|||+.+ ++....+.|..|++.
T Consensus       192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l-asgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI-ITIHEDNSLVFWDAN  241 (902)
T ss_dssp             CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE-EEEETTCCEEEEETT
T ss_pred             ccCCcCCCcccccccccccCCCeEEEEEcCCCCEE-EEEECCCeEEEEECC
Confidence            1                   346789999999755 555668889999985

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.49  E-value=0.00044  Score=70.17  Aligned_cols=73  Identities=25%  Similarity=0.413  Sum_probs=52.8

Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEE
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~  252 (393)
                      .+..|+.|++|+.|+|||+.-+.......     .....+..++.+++.++++..++..  -....|++++||++.|||+
T Consensus       474 ~f~~PDNL~fd~~G~LwI~eDg~~~~~~~-----~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGD-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGG-----GTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CccCCcceEECCCCCEEEEecCCCccccc-----ccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            46789999999999999985432211111     1123456799999999998887654  3446799999999999886

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.48  E-value=0.067  Score=55.35  Aligned_cols=50  Identities=8%  Similarity=0.057  Sum_probs=32.8

Q ss_pred             ceEEEECC-CCcEEEEeeCCC-CCccEEEEEeCCEEEEEecC-----------------CCeEEEEeCC
Q 016199          336 SGVFIVDL-DGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVH-----------------HRGILHLDVN  385 (393)
Q Consensus       336 ~~v~~~d~-~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~-----------------~~~i~~~~~~  385 (393)
                      +.+..+|. +|+++..+..+. ........+.+|+.|++...                 ...+..+.+.
T Consensus       498 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             CcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            56889986 699999988665 22222223577888876532                 3677777765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.38  E-value=0.13  Score=52.40  Aligned_cols=53  Identities=9%  Similarity=0.016  Sum_probs=34.4

Q ss_pred             CceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          335 SSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       335 ~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                      .+.|..+|+ .|+++.....+.......+...+|.+|+++ ...+|..+|.+...
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt-~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT-LDGYLKARDSDTGD  505 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC-TTSEEEEEETTTCC
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC-CCCeEEEEECCCCC
Confidence            467999997 588887775432111122345778999986 35678888865543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.38  E-value=0.0074  Score=63.01  Aligned_cols=131  Identities=11%  Similarity=0.023  Sum_probs=78.9

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-CC-----ceeeeEECCCCCCCCceEEEEEeCC-------
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-GG-----RPLGIAFANSDPDADRITMIVADAY-------  153 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~~-----~p~gl~~d~~G~~~~~~~L~v~~~~-------  153 (393)
                      +++|.+||+.++.+  ++.|+.++..++.    ...+... ..     ...++.+.+||     +.|.++...       
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Spdg-----~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGN----SSVFLENSTFDEFGHSINDYSISPDG-----QFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCC----EEEEECTTTTTTCCSCCCEEEECTTS-----SEEEEEEEEEECSSSC
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCc----eEEEEechhhhhhcccccceEECCCC-----CEEEEEECCeeeEEEc
Confidence            58899999756554  8899999998775    3333221 11     12347789999     245555332       


Q ss_pred             --CceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          154 --KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       154 --~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                        ..++.+|.++  ...+.    +.+ ......+++||| .|.++.                   .+.|+.++..+++.+
T Consensus        90 ~~~~~~~~d~~~~~~~~l~----~~~-~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~~~~~  145 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLITEE----RIP-NNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSY  145 (740)
T ss_dssp             EEEEEEEEETTTTEECCSS----CCC-TTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCE
T ss_pred             cceEEEEEECCCCcEEEcc----cCC-CcceeeEECCCCCEEEEEE-------------------CCeEEEEECCCCceE
Confidence              2255677655  22221    111 124567899999 465552                   246888888777665


Q ss_pred             EEecCc-------------------cCCCcEEEcCCCCEEEEE
Q 016199          229 VLVSDL-------------------YFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       229 ~~~~~l-------------------~~~ngi~~s~dg~~l~v~  252 (393)
                      .+..+-                   ....++++||||+.|.+.
T Consensus       146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence            543221                   122458899999987665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.37  E-value=0.0099  Score=61.66  Aligned_cols=167  Identities=10%  Similarity=0.071  Sum_probs=93.1

Q ss_pred             cccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC-
Q 016199          179 TDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM-  256 (393)
Q Consensus       179 ~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~-  256 (393)
                      ..++.++|||+ |.++...             .+.....|+.+|..+++.......-....+++++|||+.|+++.... 
T Consensus       127 ~~~~~~SPDg~~la~~~~~-------------~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~  193 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ  193 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc
Confidence            45678999995 4444210             01122379999999888655322222256799999999888876432 


Q ss_pred             --------------CeEEEEEecCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhh
Q 016199          257 --------------RRCRKFYIKGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGM  321 (393)
Q Consensus       257 --------------~ri~~~~~~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~  321 (393)
                                    ..|+++++.+.......++... .+.+..++.+++||++.+.......                  
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~------------------  255 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC------------------  255 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS------------------
T ss_pred             cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC------------------
Confidence                          2488888854321112222211 1223346889999985443321100                  


Q ss_pred             hhhhhCCCCCCCCCceEEEECCCC-------c-EEEEeeCCCCCccEEEEEeCCEEEEEecCC---CeEEEEeCCCC
Q 016199          322 VVRYLGMPPMGKSSSGVFIVDLDG-------K-PIAHYYDPEMSLISSAIKIGDHLYCGSVHH---RGILHLDVNQH  387 (393)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~d~~g-------~-~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~---~~i~~~~~~~~  387 (393)
                                 .....|+.+|.++       + .+..+..+.......+..++++||+.+..+   ..|.+++++..
T Consensus       256 -----------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          256 -----------DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             -----------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             -----------CCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence                       0013466676543       2 344454433222234556778888887533   26888887654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.36  E-value=0.00045  Score=66.11  Aligned_cols=136  Identities=15%  Similarity=0.169  Sum_probs=57.8

Q ss_pred             CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe-CCCceEEEeCC-c--eEEEee
Q 016199           94 SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD-AYKGLLKISGN-S--TVLLTD  169 (393)
Q Consensus        94 g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~-~~~gl~~id~~-g--~~~l~~  169 (393)
                      ++.+|+++.+|.|+.++..+++    ....... +......+..+|      .+|++. ..+.|+.+|.+ |  ...+..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~----~~W~~~~-~~~~s~p~~~~g------~~~v~~s~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGS----IKWTLKE-DPVLQVPTHVEE------PAFLPDPNDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCC----EEEEEEC-CCSCCCC-----------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred             CCEEEEEcCCCEEEEEECCCCC----EEEEecC-CCceecceEcCC------CEEEEeCCCCEEEEEECCCCceeeeeec
Confidence            4579999999999999988765    3221122 222222233456      677763 35568888873 4  212211


Q ss_pred             ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEE
Q 016199          170 EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHL  249 (393)
Q Consensus       170 ~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l  249 (393)
                      ..... .  .....+..++.+|++.                  ..+.|+.+|+.+|+..-...   .......+++++.+
T Consensus        78 ~~~~~-~--~~sp~~~~~~~v~~g~------------------~dg~v~a~D~~tG~~~w~~~---~~~~~~~~p~~~~v  133 (369)
T 2hz6_A           78 TIPEL-V--QASPCRSSDGILYMGK------------------KQDIWYVIDLLTGEKQQTLS---SAFADSLSPSTSLL  133 (369)
T ss_dssp             CHHHH-H--TTCSCC-----CCCCE------------------EEEEEEEECCC-------------------------E
T ss_pred             cCccc-c--ccCceEecCCEEEEEe------------------CCCEEEEEECCCCcEEEEec---CCCcccccccCCEE
Confidence            11000 0  0011222356777652                  34679999998886532111   11223455677677


Q ss_pred             EEEeCCCCeEEEEEec
Q 016199          250 VYCETSMRRCRKFYIK  265 (393)
Q Consensus       250 ~v~~~~~~ri~~~~~~  265 (393)
                      |+.. ..+.|+.++.+
T Consensus       134 ~~~~-~dg~v~a~d~~  148 (369)
T 2hz6_A          134 YLGR-TEYTITMYDTK  148 (369)
T ss_dssp             EEEE-EEEEEECCCSS
T ss_pred             EEEe-cCCEEEEEECC
Confidence            7764 45788888874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.32  E-value=0.087  Score=47.53  Aligned_cols=147  Identities=10%  Similarity=0.054  Sum_probs=83.2

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeee-ee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHN-WI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~-~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      .|+|++++ .|-+| .|+.|..|+.++++    ... +.  ........+++.++|     +.|..|...+.|..++.+.
T Consensus        30 ~l~WS~~~-~lAvg-~D~tV~iWd~~tg~----~~~~~~~~~~~~~V~~v~~~~~~-----~~l~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           30 LVDWSSGN-VLAVA-LDNSVYLWSASSGD----ILQLLQMEQPGEYISSVAWIKEG-----NYLAVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             CEEECTTS-EEEEE-ETTEEEEEETTTCC----EEEEEECCSTTCCEEEEEECTTS-----SEEEEEETTSEEEEEETTT
T ss_pred             EEEECCCC-EEEEE-eCCEEEEEECCCCC----EEEEEEecCCCCeEEEEEECCCC-----CEEEEEECCCcEEEeecCC
Confidence            38898875 55555 48899999988765    332 22  123346899999999     1345554444566677654


Q ss_pred             eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe--EEEEecCccCCCcEE
Q 016199          164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE--TKVLVSDLYFANGVV  241 (393)
Q Consensus       164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~--~~~~~~~l~~~ngi~  241 (393)
                      .+.+.. ..+..   ..-..+..++.+.++.                 ...+.+..++..++.  ...+.........++
T Consensus        99 ~~~~~~-~~~h~---~~~~~~~~~~~~l~s~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (318)
T 4ggc_A           99 QKRLRN-MTSHS---ARVGSLSWNSYILSSG-----------------SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  157 (318)
T ss_dssp             TEEEEE-EECCS---SCEEEEEEETTEEEEE-----------------ETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             ceeEEE-ecCcc---ceEEEeecCCCEEEEE-----------------ecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence            111111 11111   1112334445554442                 223455555554432  233333445567788


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      +.++++.+ ++....+.|..|++..
T Consensus       158 ~~~~~~~l-~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          158 WAPDGRHL-ASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             ECTTSSEE-EEEETTSCEEEEESSC
T ss_pred             EcCCCCEE-EEEecCcceeEEECCC
Confidence            88999755 4555678899999863

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.021  Score=57.32  Aligned_cols=181  Identities=11%  Similarity=-0.002  Sum_probs=93.2

Q ss_pred             EecCCeEEEEEcCCCCCcce-eeeeecCCCceeeeEECCCCCCCCceEEEE-EeCCCceEEEeCCc-e-E---EEee---
Q 016199          100 GCEDGWIKRVTLNDSPADSL-VHNWINTGGRPLGIAFANSDPDADRITMIV-ADAYKGLLKISGNS-T-V---LLTD---  169 (393)
Q Consensus       100 ~~~~g~I~~~~~~~~~~~~~-~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v-~~~~~gl~~id~~g-~-~---~l~~---  169 (393)
                      ++.++.|..|+.+++..... ...+....+....+++.+++.......+++ +...+-|..++.+. . .   .+..   
T Consensus       179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p  258 (524)
T 2j04_B          179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP  258 (524)
T ss_dssp             ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred             CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence            44567777777765431100 012223345678899987610000004544 43344455566543 1 0   1100   


Q ss_pred             --ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCccCCCcE--EEc
Q 016199          170 --EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLYFANGV--VLS  243 (393)
Q Consensus       170 --~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~~~ngi--~~s  243 (393)
                        ...+.. ..+..+++.+++.|..+                  ...|.|..||..++..  ..+.......+.|  +++
T Consensus       259 ~~~l~~h~-~~v~sv~~s~~~~lasg------------------s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s  319 (524)
T 2j04_B          259 SLTLSLAD-SLITTFDFLSPTTVVCG------------------FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS  319 (524)
T ss_dssp             SEEECCTT-TCEEEEEESSSSEEEEE------------------ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC
T ss_pred             eEEEEcCC-CCEEEEEecCCCeEEEE------------------eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC
Confidence              111111 23567788776655444                  3457899999875532  2233333445667  457


Q ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC-CCCeEEECCCCCEEEEEecC
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG-LPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g-~P~~i~~d~~G~lwva~~~~  301 (393)
                      ++|..++++.+..+.|..|++...+.  ...+.....+ ....++++++|..+++....
T Consensus       320 ~~g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d  376 (524)
T 2j04_B          320 DFEDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA  376 (524)
T ss_dssp             TTSCCEEEEEETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred             CCCCeEEEEeccCCeEEEEECCCCCc--ccccccccccCcccceEeCCCcCeEEEeCCC
Confidence            77745778888889999999853211  1122211111 13468899999887765543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.27  E-value=0.096  Score=48.77  Aligned_cols=178  Identities=9%  Similarity=0.015  Sum_probs=92.8

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC----CCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT----GGRPLGIAFANSDPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~----~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      -.+|++.+++. +|+....|.|++-.-.+..    ++.....    .....+|.+++ +      ++|++....+|++-+
T Consensus        38 ~~~v~~~~~~~-~~~~G~~g~i~~s~DgG~t----W~~~~~~~~~~~~~~~~i~~~~-~------~~~~~g~~g~i~~S~  105 (327)
T 2xbg_A           38 ILDMSFIDRHH-GWLVGVNATLMETRDGGQT----WEPRTLVLDHSDYRFNSVSFQG-N------EGWIVGEPPIMLHTT  105 (327)
T ss_dssp             EEEEEESSSSC-EEEEETTTEEEEESSTTSS----CEECCCCCSCCCCEEEEEEEET-T------EEEEEEETTEEEEES
T ss_pred             EEEEEECCCCc-EEEEcCCCeEEEeCCCCCC----CeECCCCCCCCCccEEEEEecC-C------eEEEEECCCeEEEEC
Confidence            44566766665 6666667777765322223    4443221    12346788875 7      888875445566543


Q ss_pred             CCce--EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc-cCC
Q 016199          161 GNST--VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL-YFA  237 (393)
Q Consensus       161 ~~g~--~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l-~~~  237 (393)
                      -.|.  +.+... ...+ ..+.+|.+.+++.+|+..                  ..+.|++-+-.+...+.+.... ...
T Consensus       106 DgG~tW~~~~~~-~~~~-~~~~~i~~~~~~~~~~~~------------------~~g~v~~S~DgG~tW~~~~~~~~~~~  165 (327)
T 2xbg_A          106 DGGQSWSQIPLD-PKLP-GSPRLIKALGNGSAEMIT------------------NVGAIYRTKDSGKNWQALVQEAIGVM  165 (327)
T ss_dssp             STTSSCEECCCC-TTCS-SCEEEEEEEETTEEEEEE------------------TTCCEEEESSTTSSEEEEECSCCCCE
T ss_pred             CCCCCceECccc-cCCC-CCeEEEEEECCCCEEEEe------------------CCccEEEEcCCCCCCEEeecCCCcce
Confidence            2332  222111 0111 113467766778888763                  2346777654344555544332 234


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEec-CCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIK-GKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~-g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .+++++++++.+ +.. ..+.+++-+-. |..   .+.+....+.....++++++|++|++..
T Consensus       166 ~~~~~~~~~~~~-~~g-~~G~~~~S~d~gG~t---W~~~~~~~~~~~~~~~~~~~g~~~~~~~  223 (327)
T 2xbg_A          166 RNLNRSPSGEYV-AVS-SRGSFYSTWEPGQTA---WEPHNRTTSRRLHNMGFTPDGRLWMIVN  223 (327)
T ss_dssp             EEEEECTTSCEE-EEE-TTSSEEEEECTTCSS---CEEEECCSSSCEEEEEECTTSCEEEEET
T ss_pred             EEEEEcCCCcEE-EEE-CCCcEEEEeCCCCCc---eeECCCCCCCccceeEECCCCCEEEEeC
Confidence            567888887544 433 34677775522 221   1112111122234577888999998765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.26  E-value=0.21  Score=50.78  Aligned_cols=41  Identities=10%  Similarity=-0.043  Sum_probs=26.8

Q ss_pred             ceEEEECC-CCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCC
Q 016199          336 SGVFIVDL-DGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHH  376 (393)
Q Consensus       336 ~~v~~~d~-~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~  376 (393)
                      +.|..+|. +|+++..+..+. ....-...+.+|++|++...+
T Consensus       494 g~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          494 GYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            56888985 699998887665 211112236789988876543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.14  E-value=0.0082  Score=58.59  Aligned_cols=157  Identities=11%  Similarity=0.058  Sum_probs=90.7

Q ss_pred             CCceEEEecCCCEEEE----EecCCeEEEEEcCCC-----CCcceeeeee---cCCCceeeeEECCC-CCCCCceEE-EE
Q 016199           84 GPEDLLYDAHSKLIYT----GCEDGWIKRVTLNDS-----PADSLVHNWI---NTGGRPLGIAFANS-DPDADRITM-IV  149 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~----~~~~g~I~~~~~~~~-----~~~~~~~~~~---~~~~~p~gl~~d~~-G~~~~~~~L-~v  149 (393)
                      ...+++|+++|+.|++    ++.++.|..|+..+.     .....+..+.   .......++++.++ +      ++ ..
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------~~las  167 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP------SMVAV  167 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT------TEEEE
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC------CEEEE
Confidence            4678999999998874    455788999987543     1000011111   12346789999987 5      44 44


Q ss_pred             EeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          150 ADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       150 ~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      +...+.|..+|... ......  .+. ...+..++++++|...++-                 ...|.|..||.......
T Consensus       168 ~s~Dg~v~iwD~~~~~~~~~~--~~~-~~~v~~v~wspdg~~lasg-----------------s~dg~v~iwd~~~~~~~  227 (434)
T 2oit_A          168 CLADGSIAVLQVTETVKVCAT--LPS-TVAVTSVCWSPKGKQLAVG-----------------KQNGTVVQYLPTLQEKK  227 (434)
T ss_dssp             EETTSCEEEEEESSSEEEEEE--ECG-GGCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTTCCEEE
T ss_pred             EECCCeEEEEEcCCCcceeec--cCC-CCceeEEEEcCCCCEEEEE-----------------cCCCcEEEEccCCcccc
Confidence            55555577778654 222211  111 1246789999999544442                 34567999998733333


Q ss_pred             EEecCcc-------CCCcEEEcCCCCEEEEEeCCCC------eEEEEEecC
Q 016199          229 VLVSDLY-------FANGVVLSPDQTHLVYCETSMR------RCRKFYIKG  266 (393)
Q Consensus       229 ~~~~~l~-------~~ngi~~s~dg~~l~v~~~~~~------ri~~~~~~g  266 (393)
                      .+.....       ....+++++++.++....+..+      .+..|++..
T Consensus       228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            3322111       3456778787755555554442      377777753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.12  E-value=0.29  Score=49.59  Aligned_cols=41  Identities=12%  Similarity=0.072  Sum_probs=27.9

Q ss_pred             ceEEEECC-CCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCC
Q 016199          336 SGVFIVDL-DGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHH  376 (393)
Q Consensus       336 ~~v~~~d~-~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~  376 (393)
                      +.+..+|. +|+++..+..+. ........+.+|++|++...+
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            46888986 699999988765 222122335789999986543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.09  E-value=0.1  Score=49.60  Aligned_cols=188  Identities=12%  Similarity=0.009  Sum_probs=95.7

Q ss_pred             CceEEEec--------CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeCCCc
Q 016199           85 PEDLLYDA--------HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADAYKG  155 (393)
Q Consensus        85 Pe~ia~d~--------~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~~~g  155 (393)
                      -.+++|.|        ||+.|..++.|+.|..|+..++.   ..............+++.+++     .+ |..+...+-
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~---~~~~~~~~~~~v~~v~~~p~~-----~~~l~~~~~d~~  210 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG---PILAGYPLSSPGISVQFRPSN-----PNQLIVGERNGN  210 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE---EEEEEEECSSCEEEEEEETTE-----EEEEEEEETTSE
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc---eeeeecCCCCCcEEEEECCCC-----CceEEecCCCCE
Confidence            45688876        77777788889999999976542   122222334567899999876     13 444443444


Q ss_pred             eEEEeCCc-eE--EEeec----------cCC----------ccccccccEEEc-CCCcEEEEeCCCccchhhheehhccc
Q 016199          156 LLKISGNS-TV--LLTDE----------AEG----------QKFKLTDGVDVA-DDGMIYFTDASNKYYLREYILDIFEG  211 (393)
Q Consensus       156 l~~id~~g-~~--~l~~~----------~~g----------~~~~~~~~l~~d-~dG~l~~td~~~~~~~~~~~~~~~e~  211 (393)
                      |..+|... ..  .....          ...          .....+..+.+. +||...++-                 
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~-----------------  273 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM-----------------  273 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE-----------------
T ss_pred             EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE-----------------
Confidence            66667543 11  00000          000          001123344443 567555542                 


Q ss_pred             CCCcEEEEEeCCCCeEEEE-e------------------cCccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcc
Q 016199          212 KPNGRLLSFDPVTKETKVL-V------------------SDLYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGR  271 (393)
Q Consensus       212 ~~~g~l~~~d~~t~~~~~~-~------------------~~l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~  271 (393)
                      ...+.+..+|..+++.... .                  .......+..+.+ .++.+.++....+.|..|+.....  .
T Consensus       274 s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~--~  351 (393)
T 4gq1_A          274 CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD--S  351 (393)
T ss_dssp             CTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT--C
T ss_pred             eCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc--E
Confidence            2345566666654332111 0                  0011122333443 344666777788999999985332  1


Q ss_pred             eeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          272 VEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       272 ~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      ...+. ....--..+++++||+++.+...
T Consensus       352 ~~~~~-~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          352 NSIPI-QLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             CEEEE-ECSSCEEEEEECTTSSEEEEEES
T ss_pred             EEEec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence            12222 12222356899999998766543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.05  E-value=0.19  Score=51.75  Aligned_cols=155  Identities=12%  Similarity=-0.084  Sum_probs=80.9

Q ss_pred             cCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeeecCC-------CceeeeEECCCCCCCCceEEEEE-eCC----C
Q 016199           92 AHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWINTG-------GRPLGIAFANSDPDADRITMIVA-DAY----K  154 (393)
Q Consensus        92 ~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~-------~~p~gl~~d~~G~~~~~~~L~v~-~~~----~  154 (393)
                      ++|+.+|....+     +.|++.+..++.    .+.+....       ....++++.+||     +.|.++ +..    .
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~l~d~~~~a~~~~~~~~~~~~SPDG-----~~la~~~~~~G~~~~  147 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQ----EKVLLDPNGWSKDGTVSLGTWAVSWDG-----KKVAFAQKPNAADEA  147 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSC----CEEEECGGGSSSSSCEEEEEEEECTTS-----SEEEEEEEETTCSCC
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCC----cEEEEchHHhccCCCEEEEEEEECCCC-----CEEEEEECCCCCceE
Confidence            677777655442     347888766554    44443211       135678899999     233333 222    2


Q ss_pred             ceEEEeCCceEEE-eeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEE
Q 016199          155 GLLKISGNSTVLL-TDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVL  230 (393)
Q Consensus       155 gl~~id~~g~~~l-~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~  230 (393)
                      .|+.+|.++.+.+ .....+..   ..++++.+||. |+++..-.. .. .   ...+......|++++..++..  +.+
T Consensus       148 ~i~v~dl~tg~~~~~~~~~~~~---~~~~~wspDg~~l~~~~~d~~-~~-~---~~~~~~~~~~v~~~~l~t~~~~~~lv  219 (695)
T 2bkl_A          148 VLHVIDVDSGEWSKVDVIEGGK---YATPKWTPDSKGFYYEWLPTD-PS-I---KVDERPGYTTIRYHTLGTEPSKDTVV  219 (695)
T ss_dssp             EEEEEETTTCCBCSSCCBSCCT---TCCCEECTTSSEEEEEECCCC-TT-S---CGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred             EEEEEECCCCCCcCCcccCccc---ccceEEecCCCEEEEEEecCC-CC-C---ccccCCCCCEEEEEECCCCchhceEE
Confidence            3778887661112 11111111   14789999995 555532110 00 0   000001123599999887652  233


Q ss_pred             ecC---ccCCCcEEEcCCCCEEEEEeCCC---CeEEEEE
Q 016199          231 VSD---LYFANGVVLSPDQTHLVYCETSM---RRCRKFY  263 (393)
Q Consensus       231 ~~~---l~~~ngi~~s~dg~~l~v~~~~~---~ri~~~~  263 (393)
                      ...   -....++++++||+.|+++....   ..|+.++
T Consensus       220 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~  258 (695)
T 2bkl_A          220 HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKR  258 (695)
T ss_dssp             ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEEC
T ss_pred             EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEc
Confidence            221   12445789999999887765433   3566554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.95  E-value=0.014  Score=56.92  Aligned_cols=102  Identities=10%  Similarity=-0.004  Sum_probs=61.3

Q ss_pred             cccEEEcCCCcEEEE---eCCCccchhhheehhcccCCCcEEEEEeCCCC-----e-------EEEEecCccCCCcEEEc
Q 016199          179 TDGVDVADDGMIYFT---DASNKYYLREYILDIFEGKPNGRLLSFDPVTK-----E-------TKVLVSDLYFANGVVLS  243 (393)
Q Consensus       179 ~~~l~~d~dG~l~~t---d~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-----~-------~~~~~~~l~~~ngi~~s  243 (393)
                      +..++++++|+..+.   ..                ...+.|..||..++     +       ...+.........++++
T Consensus        95 v~~l~~spdg~~lav~~~sg----------------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  158 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSS----------------EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN  158 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEET----------------TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEEC
T ss_pred             ccEEEEcCCCCEEEEEEecc----------------CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEEC
Confidence            678899999965552   11                33456777875432     0       11111123456889999


Q ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          244 PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      |++..++++.+..+.|..|++...   ...............++++++|++.++..
T Consensus       159 p~~~~~las~s~Dg~v~iwD~~~~---~~~~~~~~~~~~v~~v~wspdg~~lasgs  211 (434)
T 2oit_A          159 PTVPSMVAVCLADGSIAVLQVTET---VKVCATLPSTVAVTSVCWSPKGKQLAVGK  211 (434)
T ss_dssp             SSCTTEEEEEETTSCEEEEEESSS---EEEEEEECGGGCEEEEEECTTSSCEEEEE
T ss_pred             CCCCCEEEEEECCCeEEEEEcCCC---cceeeccCCCCceeEEEEcCCCCEEEEEc
Confidence            985456677777899999998642   11111111122356788999998665544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.94  E-value=0.25  Score=45.88  Aligned_cols=223  Identities=9%  Similarity=0.003  Sum_probs=118.6

Q ss_pred             eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec---CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN---TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~---~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      +|++++ + .+|+....+.|++ ..+++.   .++....   ..+.+..|++..++      ++|++...++|++-.-.|
T Consensus        84 ~i~~~~-~-~~~~~g~~g~i~~-S~DgG~---tW~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~g~v~~S~DgG  151 (327)
T 2xbg_A           84 SVSFQG-N-EGWIVGEPPIMLH-TTDGGQ---SWSQIPLDPKLPGSPRLIKALGNG------SAEMITNVGAIYRTKDSG  151 (327)
T ss_dssp             EEEEET-T-EEEEEEETTEEEE-ESSTTS---SCEECCCCTTCSSCEEEEEEEETT------EEEEEETTCCEEEESSTT
T ss_pred             EEEecC-C-eEEEEECCCeEEE-ECCCCC---CceECccccCCCCCeEEEEEECCC------CEEEEeCCccEEEEcCCC
Confidence            477765 3 5787777777777 444332   1444332   12456788877788      888886655676654344


Q ss_pred             --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-CCeEEEEecC-ccCCCc
Q 016199          164 --TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-TKETKVLVSD-LYFANG  239 (393)
Q Consensus       164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-t~~~~~~~~~-l~~~ng  239 (393)
                        -+.+.....    ....+++++++|.+|+..                  ..|.+++-+-. ....+.+... -.....
T Consensus       152 ~tW~~~~~~~~----~~~~~~~~~~~~~~~~~g------------------~~G~~~~S~d~gG~tW~~~~~~~~~~~~~  209 (327)
T 2xbg_A          152 KNWQALVQEAI----GVMRNLNRSPSGEYVAVS------------------SRGSFYSTWEPGQTAWEPHNRTTSRRLHN  209 (327)
T ss_dssp             SSEEEEECSCC----CCEEEEEECTTSCEEEEE------------------TTSSEEEEECTTCSSCEEEECCSSSCEEE
T ss_pred             CCCEEeecCCC----cceEEEEEcCCCcEEEEE------------------CCCcEEEEeCCCCCceeECCCCCCCccce
Confidence              222221111    134578888888888763                  23567776433 3344443221 123456


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEec-CCCCcceeeeecc-CCC-C-CCeEEECCCCCEEEEEecCcchhhhhhhcCcch
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIK-GKNAGRVEKFIET-LPG-L-PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFI  315 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~-g~~~~~~~~~~~~-l~g-~-P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~  315 (393)
                      ++++++++ +|+... .+.+++...+ |..   .+..... ++. . -..++.++++.+|++...               
T Consensus       210 ~~~~~~g~-~~~~~~-~G~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~---------------  269 (327)
T 2xbg_A          210 MGFTPDGR-LWMIVN-GGKIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA---------------  269 (327)
T ss_dssp             EEECTTSC-EEEEET-TTEEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSSCEEEEEST---------------
T ss_pred             eEECCCCC-EEEEeC-CceEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCCEEEEEeCC---------------
Confidence            77888885 555543 4566665323 211   1111100 111 0 123556778889987652               


Q ss_pred             hhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC---CCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          316 RKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       316 r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~---~~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                          +.+++-...|+.-..+..+.   ..........++++|+.+. ...|.+++-
T Consensus       270 --------------------g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G~i~~~~~  320 (327)
T 2xbg_A          270 --------------------GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ-KGILLRYVT  320 (327)
T ss_dssp             --------------------TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS-TTEEEEECC
T ss_pred             --------------------CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC-CceEEEEcC
Confidence                                34655544566655554221   1112222336788888864 347777764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.91  E-value=0.25  Score=50.90  Aligned_cols=41  Identities=5%  Similarity=0.157  Sum_probs=27.4

Q ss_pred             ceEEEECC-CCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCC
Q 016199          336 SGVFIVDL-DGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHH  376 (393)
Q Consensus       336 ~~v~~~d~-~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~  376 (393)
                      +.|..+|. .|+++..+..+. ..........+|++|++..++
T Consensus       479 g~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          479 GQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence            46888986 589998887655 221222236789999876653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.89  E-value=0.13  Score=53.50  Aligned_cols=163  Identities=12%  Similarity=0.136  Sum_probs=89.7

Q ss_pred             cccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC-
Q 016199          179 TDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM-  256 (393)
Q Consensus       179 ~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~-  256 (393)
                      ..++.++|||+ |.++...             .+.....|+.+|.++++.......-....++++++| +.++++.... 
T Consensus       165 ~~~~~~SPDG~~la~~~~~-------------~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~  230 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQD-------------GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEP  230 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEE-------------TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC
T ss_pred             EEeEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCc
Confidence            45788999995 4444210             011124699999998876443111111357899999 8888876432 


Q ss_pred             ------------CeEEEEEecCCCCcceeeeeccCCC---CCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhh
Q 016199          257 ------------RRCRKFYIKGKNAGRVEKFIETLPG---LPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGM  321 (393)
Q Consensus       257 ------------~ri~~~~~~g~~~~~~~~~~~~l~g---~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~  321 (393)
                                  .+|+++++.+.......++  ..+.   +-.++.+++||++.+.......                  
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~--~~~~~~~~~~~~~~SpDG~~l~~~~~~~~------------------  290 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVF--ATPELPKRGHGASVSSDGRWVVITSSEGT------------------  290 (741)
T ss_dssp             --------CCCCCEEEEEETTSCGGGCEEEE--CCTTCTTCEEEEEECTTSCEEEEEEECTT------------------
T ss_pred             ccccccccCCCCCEEEEEECCCCchhCEEEe--ccCCCCeEEEEEEECCCCCEEEEEEEccC------------------
Confidence                        3588888753321112222  2222   2236778999984443321100                  


Q ss_pred             hhhhhCCCCCCCCCceEEEECCCCc--E-EEEeeCCCCCccEEEEEeCCEEEEEecC---CCeEEEEeCCC
Q 016199          322 VVRYLGMPPMGKSSSGVFIVDLDGK--P-IAHYYDPEMSLISSAIKIGDHLYCGSVH---HRGILHLDVNQ  386 (393)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~d~~g~--~-~~~~~d~~~~~~~~~~~~~g~Lyigs~~---~~~i~~~~~~~  386 (393)
                                 .....|+.+|.++.  . ...+..+.......+..++++||+.+..   ...|.+++++.
T Consensus       291 -----------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          291 -----------DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             -----------CSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             -----------CCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence                       00134777776443  2 4445433322223345678889888753   34588888765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.82  E-value=0.42  Score=49.43  Aligned_cols=39  Identities=8%  Similarity=0.069  Sum_probs=26.4

Q ss_pred             ceEEEECC-CCcEEEEeeCCC-CCccEEEEEeCCEEEEEec
Q 016199          336 SGVFIVDL-DGKPIAHYYDPE-MSLISSAIKIGDHLYCGSV  374 (393)
Q Consensus       336 ~~v~~~d~-~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~  374 (393)
                      +.|..+|. +|+++..+..+. ........+.+|+.|++..
T Consensus       496 g~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          496 GRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence            56889996 699998888664 2111122367899998855

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.80  E-value=0.22  Score=51.44  Aligned_cols=165  Identities=13%  Similarity=0.124  Sum_probs=91.7

Q ss_pred             ccccEEEcCCCc-EEEE-eCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC
Q 016199          178 LTDGVDVADDGM-IYFT-DASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS  255 (393)
Q Consensus       178 ~~~~l~~d~dG~-l~~t-d~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~  255 (393)
                      ...++.++|||+ |.++ +.+              +.....|+.+|.++++.......-....+++++ ||+.|+++...
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred             EEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence            456788999995 4333 211              122346999999998754331111113578899 99988887644


Q ss_pred             ------------CCeEEEEEecCCCCcceeeeeccC--CCCCCeEEECCCCCEE-EEEecCcchhhhhhhcCcchhhhhh
Q 016199          256 ------------MRRCRKFYIKGKNAGRVEKFIETL--PGLPDNIRYDGEGHYL-IALATEFSTYWDLAYRYPFIRKVSG  320 (393)
Q Consensus       256 ------------~~ri~~~~~~g~~~~~~~~~~~~l--~g~P~~i~~d~~G~lw-va~~~~r~~~~~~~~~~~~~r~~~~  320 (393)
                                  ...|+++++.........++....  +.+-.++.+++||++. +......                  
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~------------------  256 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST------------------  256 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS------------------
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC------------------
Confidence                        245888887543222222332111  1122356789999854 3332110                  


Q ss_pred             hhhhhhCCCCCCCCCceEEEECCCCc--EEEEeeCCCCCccEEEEEeCCEEEEEecCC---CeEEEEeCCCCC
Q 016199          321 MVVRYLGMPPMGKSSSGVFIVDLDGK--PIAHYYDPEMSLISSAIKIGDHLYCGSVHH---RGILHLDVNQHP  388 (393)
Q Consensus       321 ~~~~~~~~~~~~~~~~~v~~~d~~g~--~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~---~~i~~~~~~~~~  388 (393)
                                   ..+.|+.+|.++.  ....+..+.......+..++++||+.+..+   ..|.+++++...
T Consensus       257 -------------~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          257 -------------SGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG  316 (693)
T ss_dssp             -------------SCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             -------------CCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence                         0134677775322  344454433222233556788988887543   578888887543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.75  E-value=0.045  Score=48.20  Aligned_cols=105  Identities=9%  Similarity=0.004  Sum_probs=66.3

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEe---eccCCccccccccEEEcCCCcEEEEeCCCccchhh
Q 016199          129 RPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLT---DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE  203 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~---~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~  203 (393)
                      ....++++++|      .||.. ..+.|+++++..  ...+.   ..+.......-..+.+|++|.||+..         
T Consensus        42 ~~~~laf~P~G------~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~---------  105 (236)
T 1tl2_A           42 NFKFLFLSPGG------ELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS---------  105 (236)
T ss_dssp             TCSEEEECTTS------CEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE---------
T ss_pred             cceeEEECCCc------cEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC---------
Confidence            45589999999      99999 566799998732  11110   11110011113478999999999983         


Q ss_pred             heehhcccCCCcEEEEEeCCCCe-------EEEEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKE-------TKVLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKF  262 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~-------~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~  262 (393)
                                .|.|||.++.+..       -+.+-+ +.....-|.++||| .||...  .+++++.
T Consensus       106 ----------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          106 ----------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFYKA  159 (236)
T ss_dssp             ----------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEEEE
T ss_pred             ----------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEEec
Confidence                      3789999985421       122222 22334778899999 687776  6777773

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.52  E-value=0.16  Score=52.45  Aligned_cols=85  Identities=19%  Similarity=0.251  Sum_probs=47.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcce-eeeeccCCCCCCeEEECCCC
Q 016199          214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRV-EKFIETLPGLPDNIRYDGEG  292 (393)
Q Consensus       214 ~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~-~~~~~~l~g~P~~i~~d~~G  292 (393)
                      .|.|+.+|+.|++..=-........+..+...+..+|+. +..+.|+.++.+.   ++. ..+.........-+....+|
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~t---G~~l~~~~~~~~~~~~p~~~~~~G  512 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADK---GEALWQFEAQSGIVAAPMTFELAG  512 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCCEEEEETT
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhc---ChhheEecCCCCcccCceEEEECC
Confidence            378999999998764222211223444444455577765 6788999999742   221 11211111111224444579


Q ss_pred             CEEEEEecCc
Q 016199          293 HYLIALATEF  302 (393)
Q Consensus       293 ~lwva~~~~r  302 (393)
                      ++|++...+.
T Consensus       513 ~~yva~~~G~  522 (668)
T 1kv9_A          513 RQYVAIMAGW  522 (668)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEecC
Confidence            9898876653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.51  E-value=0.23  Score=46.94  Aligned_cols=147  Identities=11%  Similarity=0.001  Sum_probs=78.9

Q ss_pred             EEEec---CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCC---CceeeeEECCCCCCCCceEEEEEeCC--------
Q 016199           88 LLYDA---HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG---GRPLGIAFANSDPDADRITMIVADAY--------  153 (393)
Q Consensus        88 ia~d~---~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~---~~p~gl~~d~~G~~~~~~~L~v~~~~--------  153 (393)
                      +++.+   ++..|..++.|+.|..|+.++++   ....+....   .....++|.++|      .+++....        
T Consensus       184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk---~l~tL~g~~~~v~~v~~vafSpdG------~~lvs~s~~~~~w~la  254 (356)
T 2w18_A          184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ---LLKKMHIDDSYQASVCHKAYSEMG------LLFIVLSHPCAKESES  254 (356)
T ss_dssp             EEEEEEETSTTEEEEEETTSEEEEEETTTCC---EEEEEECCC---CCCEEEEEEETT------EEEEEEC---------
T ss_pred             EEeeccCCCCceEEEecCCCcEEEEECCCCc---EEEEEcCCCcceeeeEEEEECCCC------CEEEEeccCCCcceee
Confidence            45555   55666667889999999998765   134443111   123456899999      76644221        


Q ss_pred             -----CceEEEeCCc-e--EEEeec-cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          154 -----KGLLKISGNS-T--VLLTDE-AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       154 -----~gl~~id~~g-~--~~l~~~-~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                           .-+..+|+++ .  ..+.-. .+|....   -+..+.+|.+.++-                 ...+.|..+|..+
T Consensus       255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~---~lsg~~sg~~lASg-----------------S~DgTIkIWDl~t  314 (356)
T 2w18_A          255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR---FLEGDVKDHCAAAI-----------------LTSGTIAIWDLLL  314 (356)
T ss_dssp             ---CCEEEEEEETTTTEEEEEEEECCCTTCCCC---EEEEEEETTEEEEE-----------------ETTSCEEEEETTT
T ss_pred             ccCCCcEEEEEECCCCEEEEEEEeeccCCCcce---eEccccCCCEEEEE-----------------cCCCcEEEEECCC
Confidence                 1133345433 1  111100 0111100   01111123333331                 2346788999998


Q ss_pred             CeEEEEecC-ccCCC-cEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199          225 KETKVLVSD-LYFAN-GVVLSPDQTHLVYCETSMRRCRKFYI  264 (393)
Q Consensus       225 ~~~~~~~~~-l~~~n-gi~~s~dg~~l~v~~~~~~ri~~~~~  264 (393)
                      ++......+ ...+. .++|+|||+.| ++.+.++.|..|++
T Consensus       315 Gk~l~tL~gH~~~vvs~vafSPDG~~L-aSGS~D~TIklWd~  355 (356)
T 2w18_A          315 GQCTALLPPVSDQHWSFVKWSGTDSHL-LAGQKDGNIFVYHY  355 (356)
T ss_dssp             CSEEEEECCC--CCCCEEEECSSSSEE-EEECTTSCEEEEEE
T ss_pred             CcEEEEecCCCCCeEEEEEECCCCCEE-EEEECCCcEEEecC
Confidence            876554432 22334 48999999754 66777888888875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.43  E-value=0.28  Score=50.78  Aligned_cols=84  Identities=17%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC--CCCCeEEECC
Q 016199          214 NGRLLSFDPVTKETKVLV-SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP--GLPDNIRYDG  290 (393)
Q Consensus       214 ~g~l~~~d~~t~~~~~~~-~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~--g~P~~i~~d~  290 (393)
                      .|.|..+|+.|++..-.. .+.. .++-.++..+..+|+ .+..+.|+.||.+.   ++. .+.-.++  ....-+....
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~-gt~dg~l~a~D~~t---G~~-lw~~~~~~~~~~~p~ty~~  527 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFE-GSADGRVIAYAADT---GEK-LWEQPAASGVMAAPVTYSV  527 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEE-ECTTSEEEEEETTT---CCE-EEEEECSSCCCSCCEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEE-ECCCCcEEEEECCC---Ccc-ceeeeCCCCcccCceEEEE
Confidence            378999999998754322 2222 233345555555655 46789999999742   222 1111222  1222366567


Q ss_pred             CCCEEEEEecCcc
Q 016199          291 EGHYLIALATEFS  303 (393)
Q Consensus       291 ~G~lwva~~~~r~  303 (393)
                      +|+.||+...+..
T Consensus       528 ~G~qyv~~~~G~g  540 (689)
T 1yiq_A          528 DGEQYVTFMAGWG  540 (689)
T ss_dssp             TTEEEEEEEECCC
T ss_pred             CCEEEEEEEecCC
Confidence            8999988765533

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.41  E-value=0.49  Score=44.59  Aligned_cols=144  Identities=7%  Similarity=-0.004  Sum_probs=70.2

Q ss_pred             EEEEEeCCCc-eEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199          146 TMIVADAYKG-LLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFD  221 (393)
Q Consensus       146 ~L~v~~~~~g-l~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d  221 (393)
                      .+++.....+ |...|.+.   ...+..  .......+..+++.|+|.+.++-...     ....++..+...+.+..+|
T Consensus       194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g--~~~~v~~v~~vafSpdG~~lvs~s~~-----~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          194 EALLGTTIMNNIVIWNLKTGQLLKKMHI--DDSYQASVCHKAYSEMGLLFIVLSHP-----CAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC--CC---CCCEEEEEEETTEEEEEEC-----------------CCEEEEEEE
T ss_pred             ceEEEecCCCcEEEEECCCCcEEEEEcC--CCcceeeeEEEEECCCCCEEEEeccC-----CCcceeeccCCCcEEEEEE
Confidence            6666655555 55568764   333321  11112345567899999776653211     0112334455667788899


Q ss_pred             CCCCeEEEEecCccCCCc-----EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC-eEEECCCCCEE
Q 016199          222 PVTKETKVLVSDLYFANG-----VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD-NIRYDGEGHYL  295 (393)
Q Consensus       222 ~~t~~~~~~~~~l~~~ng-----i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~-~i~~d~~G~lw  295 (393)
                      +++++...... ..+|.|     +..+.++ .+.++.+.++.|..||+...+  ....+. .....+. .++++++|++.
T Consensus       267 ~~tgk~l~v~~-~~~p~Gh~~~~lsg~~sg-~~lASgS~DgTIkIWDl~tGk--~l~tL~-gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          267 PKTTLSVGVML-YCLPPGQAGRFLEGDVKD-HCAAAILTSGTIAIWDLLLGQ--CTALLP-PVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             TTTTEEEEEEE-ECCCTTCCCCEEEEEEET-TEEEEEETTSCEEEEETTTCS--EEEEEC-CC--CCCCEEEECSSSSEE
T ss_pred             CCCCEEEEEEE-eeccCCCcceeEccccCC-CEEEEEcCCCcEEEEECCCCc--EEEEec-CCCCCeEEEEEECCCCCEE
Confidence            98886533210 000111     1112223 245666678899999985321  122222 1111233 37899999987


Q ss_pred             EEEecC
Q 016199          296 IALATE  301 (393)
Q Consensus       296 va~~~~  301 (393)
                      ++....
T Consensus       342 aSGS~D  347 (356)
T 2w18_A          342 LAGQKD  347 (356)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            765543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.10  E-value=0.76  Score=46.45  Aligned_cols=83  Identities=17%  Similarity=0.233  Sum_probs=46.5

Q ss_pred             CCcEEEEEeCCCCeEE-EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC--CCCeEEEC
Q 016199          213 PNGRLLSFDPVTKETK-VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG--LPDNIRYD  289 (393)
Q Consensus       213 ~~g~l~~~d~~t~~~~-~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g--~P~~i~~d  289 (393)
                      ..|.|+.+|+.+++.. ........-.+.....++ .+|+ .+..+.|+.||.+   +++. .+...++.  ...-+...
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg-lvf~-g~~dg~l~A~D~~---tG~~-lW~~~~~~g~~a~P~~y~  537 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGN-LVFT-GTGDGYFKAFDAK---SGKE-LWKFQTGSGIVSPPITWE  537 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTT-EEEE-ECTTSEEEEEETT---TCCE-EEEEECSSCCCSCCEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEeCCC-EEEE-ECCCCcEEEEECC---CCCE-EEEecCCCCcccCceEEE
Confidence            3588999999988753 222222211233233344 6666 5668899999974   2221 12112221  12225656


Q ss_pred             CCCCEEEEEecC
Q 016199          290 GEGHYLIALATE  301 (393)
Q Consensus       290 ~~G~lwva~~~~  301 (393)
                      .+|+.||+...+
T Consensus       538 ~~G~qYv~~~~G  549 (582)
T 1flg_A          538 QDGEQYLGVTVG  549 (582)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCEEEEEEEcc
Confidence            789999987765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.35  E-value=1.9  Score=40.61  Aligned_cols=143  Identities=11%  Similarity=0.039  Sum_probs=77.9

Q ss_pred             cCCCEEEEEecCCeEEEEEcCCCCCcceeee---ee---cCCCceeeeEECC--------CCCCCCceEEEEEeCCCc-e
Q 016199           92 AHSKLIYTGCEDGWIKRVTLNDSPADSLVHN---WI---NTGGRPLGIAFAN--------SDPDADRITMIVADAYKG-L  156 (393)
Q Consensus        92 ~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~---~~---~~~~~p~gl~~d~--------~G~~~~~~~L~v~~~~~g-l  156 (393)
                      ++++.|..++.|+.|..|+.+.+.    ...   +.   ...+....+++.+        +|      ++++.....+ +
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~----~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~------~~las~s~D~tv  168 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNET----IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE------QVIASVGDDCTL  168 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTE----EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE------EEEEEEETTSEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCc----cceeeeecccCCCCCceEEEEEccccccccCCCC------CEEEEEECCCeE
Confidence            344456677789988888877653    221   11   1234578888875        66      6666545444 5


Q ss_pred             EEEeCCc-eEEEe-eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-
Q 016199          157 LKISGNS-TVLLT-DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-  232 (393)
Q Consensus       157 ~~id~~g-~~~l~-~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-  232 (393)
                      ..+|... ..... ....    ..+..+++.|++ ++.++-                 ...+.|..||..+++...... 
T Consensus       169 ~~Wd~~~~~~~~~~~~~~----~~v~~v~~~p~~~~~l~~~-----------------~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          169 IIWRLTDEGPILAGYPLS----SPGISVQFRPSNPNQLIVG-----------------ERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             EEEEEETTEEEEEEEECS----SCEEEEEEETTEEEEEEEE-----------------ETTSEEEEEETTCCC-------
T ss_pred             EEEECCCCceeeeecCCC----CCcEEEEECCCCCceEEec-----------------CCCCEEEEEECCCCcccccccc
Confidence            5567532 21111 1111    124578889887 444442                 234567778876654321100 


Q ss_pred             -------------------------CccCCCcEEEc-CCCCEEEEEeCCCCeEEEEEecC
Q 016199          233 -------------------------DLYFANGVVLS-PDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       233 -------------------------~l~~~ngi~~s-~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                                               .......+.++ +|++.+ ++....+++..|++..
T Consensus       228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l-~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI-LAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE-EEECTTSEEEEEEC--
T ss_pred             cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE-EEEeCCCCEEEEECcc
Confidence                                     01123456665 788655 5666788999998753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.34  E-value=0.68  Score=48.29  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=58.0

Q ss_pred             cccEEEc-CCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecCcc-CCCcEEEcCCCCEEEEEeC
Q 016199          179 TDGVDVA-DDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDLY-FANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       179 ~~~l~~d-~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~l~-~~ngi~~s~dg~~l~v~~~  254 (393)
                      ..+..++ |||+ |.++...             .+.....|+.+|.+++ +.  +...+. ...++++++||+.|+++..
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~  240 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTK  240 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEE
Confidence            3467899 9995 5555311             0122235999999887 52  111111 1357899999988777654


Q ss_pred             CC----CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          255 SM----RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       255 ~~----~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      ..    .+|+++++.+.......++......+-.++.+++||++.+
T Consensus       241 d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~  286 (751)
T 2xe4_A          241 DETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLC  286 (751)
T ss_dssp             CTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEE
T ss_pred             CCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEE
Confidence            21    3688888754322222233221222333567899998443

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=95.33  E-value=3.3  Score=43.34  Aligned_cols=151  Identities=10%  Similarity=0.035  Sum_probs=81.5

Q ss_pred             CceEEEecC-CCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-------CCceeeeEECCCCCCCCceEEEEEeCC---
Q 016199           85 PEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-------GGRPLGIAFANSDPDADRITMIVADAY---  153 (393)
Q Consensus        85 Pe~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-------~~~p~gl~~d~~G~~~~~~~L~v~~~~---  153 (393)
                      -.+|+++|. .+++|+++..++|++-+-.+..    ++.+...       ......|++++..+    +.+|++...   
T Consensus        17 i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~t----W~~~~~~~~~~~~~~~~i~~ia~dp~~~----~~i~~~~g~~~~   88 (789)
T 1sqj_A           17 ITGIVAHPKTKDLLYARTDIGGAYRWDAGTSK----WIPLNDFIEAQDMNIMGTESIALDPNNP----DRLYLAQGRYVG   88 (789)
T ss_dssp             EEEEEECSSSTTCEEEEESSSCEEEEETTTTE----EEESCTTCCGGGGGGCSEEEEEEETTEE----EEEEEEECSCTT
T ss_pred             EEEEEECCCCCCEEEEEecCCCEEEecCCCCC----eeECccCCCcccccCCceeEEEECCCCC----CEEEEEeCccCC
Confidence            345778874 3469999988889988755544    5554321       12367888887421    178998643   


Q ss_pred             ---CceEEEeCCce--EEEeec--cCC-cccc-ccccEEEcCC--CcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          154 ---KGLLKISGNST--VLLTDE--AEG-QKFK-LTDGVDVADD--GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       154 ---~gl~~id~~g~--~~l~~~--~~g-~~~~-~~~~l~~d~d--G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                         .+|++-+-.|.  +.+...  ..+ .+.+ ....|++++.  +.+|++.                  ..++||+=+-
T Consensus        89 ~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~------------------~~~gl~~S~D  150 (789)
T 1sqj_A           89 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT------------------RTEGIWKSSD  150 (789)
T ss_dssp             SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC------------------SSSCEEEESS
T ss_pred             CcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe------------------ccCCEEEECC
Confidence               45665544442  222111  101 0111 2356888874  4788873                  2245776543


Q ss_pred             CCCeEEEEecC----c--cCCCcEEEcC-CCCEEEEEeCCCCeEEE
Q 016199          223 VTKETKVLVSD----L--YFANGVVLSP-DQTHLVYCETSMRRCRK  261 (393)
Q Consensus       223 ~t~~~~~~~~~----l--~~~ngi~~s~-dg~~l~v~~~~~~ri~~  261 (393)
                      .++..+.+...    .  .....++++| +++.+|+.......|++
T Consensus       151 gG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~  196 (789)
T 1sqj_A          151 RAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  196 (789)
T ss_dssp             TTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             CCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence            33444443321    0  1123466666 34578887654355665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.21  E-value=3.1  Score=42.38  Aligned_cols=122  Identities=12%  Similarity=0.087  Sum_probs=68.9

Q ss_pred             CceEEEec-CCCEEEEEecCC-----------eEEEEEcCCCCCcceeeeeecC----CCceeeeEECCCCCCCCceEEE
Q 016199           85 PEDLLYDA-HSKLIYTGCEDG-----------WIKRVTLNDSPADSLVHNWINT----GGRPLGIAFANSDPDADRITMI  148 (393)
Q Consensus        85 Pe~ia~d~-~g~~L~~~~~~g-----------~I~~~~~~~~~~~~~~~~~~~~----~~~p~gl~~d~~G~~~~~~~L~  148 (393)
                      +.+.++.+ +|+++.+|..+.           .+.+||+.++.    +......    .....+.++..+|      +||
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~----w~~~~~~~~~~~~~~~~~~~~~~g------~ly  257 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI----VSDRTVTVTKHDMFCPGISMDGNG------QIV  257 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC----BCCCEEEECSCCCSSCEEEECTTS------CEE
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc----EEeCcccCCCCCCccccccCCCCC------CEE
Confidence            44677776 665444443211           47888888765    4433221    1122356777788      898


Q ss_pred             EEeCC--CceEEEeCCc-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          149 VADAY--KGLLKISGNS-T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       149 v~~~~--~gl~~id~~g-~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      +....  ..+.++|+.. . +.+. ....  -+.-+..++-++|.||+.-....           .......+.+||+.+
T Consensus       258 v~GG~~~~~v~~yd~~t~~W~~~~-~~~~--~R~~~s~~~~~dg~iyv~GG~~~-----------~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          258 VTGGNDAKKTSLYDSSSDSWIPGP-DMQV--ARGYQSSATMSDGRVFTIGGSWS-----------GGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EECSSSTTCEEEEEGGGTEEEECC-CCSS--CCSSCEEEECTTSCEEEECCCCC-----------SSSCCCCEEEEETTT
T ss_pred             EeCCCCCCceEEecCcCCceeECC-CCCc--cccccceEEecCCeEEEEeCccc-----------CCcccccceEeCCCC
Confidence            88542  2488888765 1 1221 1111  23345666777899998632110           001234589999999


Q ss_pred             CeEEEE
Q 016199          225 KETKVL  230 (393)
Q Consensus       225 ~~~~~~  230 (393)
                      ++.+.+
T Consensus       324 ~~W~~~  329 (656)
T 1k3i_A          324 KTWTSL  329 (656)
T ss_dssp             TEEEEE
T ss_pred             CcceeC
Confidence            888776

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=94.82  E-value=4.5  Score=42.14  Aligned_cols=150  Identities=11%  Similarity=0.050  Sum_probs=79.7

Q ss_pred             CceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeec-C-----------CCceeeeEECCCCCCCCceEEEEEe
Q 016199           85 PEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-T-----------GGRPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        85 Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~-----------~~~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      -.+|+++|.+ +++|+++..|+|++-+-.+..    ++.... .           ......|++|+..+    +.+|++.
T Consensus        23 i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~t----W~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~----~~~~~~~   94 (763)
T 3a0f_A           23 ISGLVAHPTEKDLIYARTDIGGTYRWNAAKWE----WEPITDFIINNALAGNGANLLGTESIALDPHNP----DRLYLAQ   94 (763)
T ss_dssp             EEEEEECSSSTTCEEEEESSSCEEEEETTTTE----EEESCTTCBTTCSSSCCCCCCSEEEEECCTTCT----TCEEEEE
T ss_pred             eeEEEeCCCCCCEEEEEeccCcEEEECCCCCC----eeECccCccccccCCCcccccceeEEEECCCCC----CEEEEEe
Confidence            3468888865 579999988889987755444    554432 1           12357788887321    1799976


Q ss_pred             C-------CCceEEEeCCc--eEEEeec--cCCc-ccc-ccccEEEcCC--CcEEEEeCCCccchhhheehhcccCCCcE
Q 016199          152 A-------YKGLLKISGNS--TVLLTDE--AEGQ-KFK-LTDGVDVADD--GMIYFTDASNKYYLREYILDIFEGKPNGR  216 (393)
Q Consensus       152 ~-------~~gl~~id~~g--~~~l~~~--~~g~-~~~-~~~~l~~d~d--G~l~~td~~~~~~~~~~~~~~~e~~~~g~  216 (393)
                      .       ..+|++-+-.|  -+.+...  ..+. ..+ ....|++++.  +.+|++.                  ..++
T Consensus        95 g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~------------------~~~~  156 (763)
T 3a0f_A           95 GDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS------------------RTQG  156 (763)
T ss_dssp             CSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC------------------SSSC
T ss_pred             cccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe------------------CCCc
Confidence            4       24465554344  1222211  1000 001 1146888874  5888873                  2245


Q ss_pred             EEEEeCCCCeEEEEecCcc-------CCCcEEEcCC-CCEEEEEeCCCCeEEE
Q 016199          217 LLSFDPVTKETKVLVSDLY-------FANGVVLSPD-QTHLVYCETSMRRCRK  261 (393)
Q Consensus       217 l~~~d~~t~~~~~~~~~l~-------~~ngi~~s~d-g~~l~v~~~~~~ri~~  261 (393)
                      ||+=+-.+...+.+. .+.       ....|+++|. .+.+|+.....+.|++
T Consensus       157 l~~S~DgG~TW~~~~-~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~  208 (763)
T 3a0f_A          157 LWRSTDRAQTWSRMN-QLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWV  208 (763)
T ss_dssp             EEEESSTTSSCEECT-TSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEE
T ss_pred             EEEECCCCcCccccc-cCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEE
Confidence            776543333444332 221       1234567664 3467777654334554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.49  E-value=1.8  Score=43.35  Aligned_cols=86  Identities=16%  Similarity=0.117  Sum_probs=57.6

Q ss_pred             EEEEEeCCC-----CeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC------CC-cceee-eecc-CCC
Q 016199          216 RLLSFDPVT-----KETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK------NA-GRVEK-FIET-LPG  281 (393)
Q Consensus       216 ~l~~~d~~t-----~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~------~~-~~~~~-~~~~-l~g  281 (393)
                      ++-.+|...     ..+..+...-..|+|+.++|||+++++++-...++..|+.+.-      +. .-... ..+- +.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            466677653     1344444444679999999999999999999999999998621      11 11111 1111 122


Q ss_pred             CCCeEEECCCCCEEEEEecC
Q 016199          282 LPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       282 ~P~~i~~d~~G~lwva~~~~  301 (393)
                      -|--.++|++|+.|.++.-.
T Consensus       379 GPlHt~Fd~~G~aYTtlfid  398 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFID  398 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTT
T ss_pred             cccEEEECCCCceEeeeeec
Confidence            37778999999999988654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=94.37  E-value=3.7  Score=39.14  Aligned_cols=129  Identities=12%  Similarity=0.121  Sum_probs=79.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ..+..+++  +++.|+++ .++.|..|+......   .............+..-+ .      ++.++...+.|+.++.+
T Consensus        88 p~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~---~~~~~~~~~~v~~i~~~~-p------~~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           88 PDVIFVCF--HGDQVLVS-TRNALYSLDLEELSE---FRTVTSFEKPVFQLKNVN-N------TLVILNSVNDLSALDLR  154 (388)
T ss_dssp             TTEEEEEE--ETTEEEEE-ESSEEEEEESSSTTC---EEEEEECSSCEEEEEECS-S------EEEEEETTSEEEEEETT
T ss_pred             CCeeEEEE--CCCEEEEE-cCCcEEEEEchhhhc---cCccceeecceeeEEecC-C------CEEEEECCCCEEEEEcc
Confidence            44788999  67789998 778999999865431   111111122234444432 2      57677666777777765


Q ss_pred             c--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE---EEE------e
Q 016199          163 S--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET---KVL------V  231 (393)
Q Consensus       163 g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~---~~~------~  231 (393)
                      .  ...+.        ..+..++++++| +.++                  ..+|.+..|++++++.   .++      .
T Consensus       155 ~~~~~~~~--------~~Vs~v~WSpkG-~~vg------------------~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~  207 (388)
T 1xip_A          155 TKSTKQLA--------QNVTSFDVTNSQ-LAVL------------------LKDRSFQSFAWRNGEMEKQFEFSLPSELE  207 (388)
T ss_dssp             TCCEEEEE--------ESEEEEEECSSE-EEEE------------------ETTSCEEEEEEETTEEEEEEEECCCHHHH
T ss_pred             CCcccccc--------CCceEEEEcCCc-eEEE------------------EcCCcEEEEcCCCccccccceecCCcccc
Confidence            3  22221        235688999999 5555                  2346678888887773   334      1


Q ss_pred             c---CccCCCcEEEcCCCCEEEE
Q 016199          232 S---DLYFANGVVLSPDQTHLVY  251 (393)
Q Consensus       232 ~---~l~~~ngi~~s~dg~~l~v  251 (393)
                      +   +-..+..|.+.+++.++.+
T Consensus       208 ~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          208 ELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cccCCCeeEEEEEEecCCeEEEE
Confidence            1   2344677888888876654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=94.06  E-value=0.16  Score=51.03  Aligned_cols=62  Identities=15%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             ccCCCceEEEecCCCEEEEEecC-------------CeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCce
Q 016199           81 VLKGPEDLLYDAHSKLIYTGCED-------------GWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRI  145 (393)
Q Consensus        81 ~~~~Pe~ia~d~~g~~L~~~~~~-------------g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~  145 (393)
                      .+..|.+|++|++|+ ||+++..             ..++++++++++    ++.+..  ....|.|++|.+|+     +
T Consensus       474 ~fnsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe----l~~fl~~P~~aEpnGiafSPD~-----k  543 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGE----IRRFMVGPIGCEVTGISFSPDQ-----K  543 (592)
T ss_dssp             CCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCC----EEEEEECCTTCEEEEEEECTTS-----S
T ss_pred             ccCCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCe----EEEEEeCCCCccccCCEECCCC-----C
Confidence            478999999999997 8885432             279999987776    666653  23579999999998     3


Q ss_pred             EEEEEeC
Q 016199          146 TMIVADA  152 (393)
Q Consensus       146 ~L~v~~~  152 (393)
                      .|||+-.
T Consensus       544 tLfV~vQ  550 (592)
T 4a9v_A          544 TLFVGIQ  550 (592)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            7888843

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=93.99  E-value=1.8  Score=41.42  Aligned_cols=175  Identities=14%  Similarity=0.088  Sum_probs=96.3

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCC-------CcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP-------ADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL  157 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~-------~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~  157 (393)
                      ...+++++..+.++++..++ ++.++.+...       ............. +..|+| .+.      .|+++ ..++|.
T Consensus        40 ~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~------~L~v~-~~~~l~  109 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGD------QVLVS-TRNALY  109 (388)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETT------EEEEE-ESSEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCC------EEEEE-cCCcEE
Confidence            34488999988777777664 5557654211       0000111122345 899999 333      78888 567788


Q ss_pred             EEeCCc-e--EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc
Q 016199          158 KISGNS-T--VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL  234 (393)
Q Consensus       158 ~id~~g-~--~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l  234 (393)
                      .+|... .  .... ... .+   ++++..-+. ++.+.                  +..|.|+.+|.+++....+.   
T Consensus       110 v~dv~sl~~~~~~~-~~~-~~---v~~i~~~~p-~~av~------------------~~dG~L~v~dl~~~~~~~~~---  162 (388)
T 1xip_A          110 SLDLEELSEFRTVT-SFE-KP---VFQLKNVNN-TLVIL------------------NSVNDLSALDLRTKSTKQLA---  162 (388)
T ss_dssp             EEESSSTTCEEEEE-ECS-SC---EEEEEECSS-EEEEE------------------ETTSEEEEEETTTCCEEEEE---
T ss_pred             EEEchhhhccCccc-eee-cc---eeeEEecCC-CEEEE------------------ECCCCEEEEEccCCcccccc---
Confidence            888654 1  1111 111 11   224333322 24443                  34578999998877655433   


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee------cc--CCCCCCeEEECCCCCEEEEEe
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI------ET--LPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~------~~--l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .....++++++|  ++ ....++.+..|++++........+.      ++  .......|+.-+++.+.++-.
T Consensus       163 ~~Vs~v~WSpkG--~~-vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          163 QNVTSFDVTNSQ--LA-VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             ESEEEEEECSSE--EE-EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCceEEEEcCCc--eE-EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            346789999999  33 3445788888887653211011221      10  122345577777777666544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=93.39  E-value=0.052  Score=51.56  Aligned_cols=132  Identities=15%  Similarity=0.096  Sum_probs=51.8

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec-CCCCcceeeeeccCCCC-CCeEEECC
Q 016199          213 PNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK-GKNAGRVEKFIETLPGL-PDNIRYDG  290 (393)
Q Consensus       213 ~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~-g~~~~~~~~~~~~l~g~-P~~i~~d~  290 (393)
                      ..+.|+.+|.++|+..--... .......+..++ .+|+..+..+.|+.++.+ |+..   ..+....+.. -...++..
T Consensus        17 ~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~---w~~~~~~~~~~~~sp~~~~   91 (369)
T 2hz6_A           17 LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGL---TKLPFTIPELVQASPCRSS   91 (369)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCS---EECSCCHHHHHTTCSCC--
T ss_pred             CCCEEEEEECCCCCEEEEecC-CCceecceEcCC-CEEEEeCCCCEEEEEECCCCcee---eeeeccCccccccCceEec
Confidence            356899999888865422221 222222334455 466776778899999974 3211   1111000000 00112223


Q ss_pred             CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEEEeCCEE
Q 016199          291 EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIKIGDHL  369 (393)
Q Consensus       291 ~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~~~g~L  369 (393)
                      +|.++++...                                   +.|+.+|.+ |+++..+..+...   ...+.++.|
T Consensus        92 ~~~v~~g~~d-----------------------------------g~v~a~D~~tG~~~w~~~~~~~~---~~~p~~~~v  133 (369)
T 2hz6_A           92 DGILYMGKKQ-----------------------------------DIWYVIDLLTGEKQQTLSSAFAD---SLSPSTSLL  133 (369)
T ss_dssp             ---CCCCEEE-----------------------------------EEEEEECCC-------------------------E
T ss_pred             CCEEEEEeCC-----------------------------------CEEEEEECCCCcEEEEecCCCcc---cccccCCEE
Confidence            5666665542                                   358889974 8877666543311   112366888


Q ss_pred             EEEecCCCeEEEEeCCCCC
Q 016199          370 YCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       370 yigs~~~~~i~~~~~~~~~  388 (393)
                      |+++. ...|..+|.+...
T Consensus       134 ~~~~~-dg~v~a~d~~tG~  151 (369)
T 2hz6_A          134 YLGRT-EYTITMYDTKTRE  151 (369)
T ss_dssp             EEEEE-EEEEECCCSSSSS
T ss_pred             EEEec-CCEEEEEECCCCC
Confidence            88863 3467777765443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=93.17  E-value=1.4  Score=44.59  Aligned_cols=68  Identities=15%  Similarity=0.242  Sum_probs=45.0

Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCC---------------------CeEEEEEecCCCCc----ceeeeec-c---------
Q 016199          234 LYFANGVVLSPDQTHLVYCETSM---------------------RRCRKFYIKGKNAG----RVEKFIE-T---------  278 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~---------------------~ri~~~~~~g~~~~----~~~~~~~-~---------  278 (393)
                      +..+-++.+++....+|++-+.+                     +.|++|..++....    ..+.++. .         
T Consensus       383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~  462 (592)
T 3zwu_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence            34567888987655799987742                     57999988643211    1122210 0         


Q ss_pred             -----------CCCCCCeEEECCCCCEEEEEecC
Q 016199          279 -----------LPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       279 -----------l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                                 .-..||||++|++|+|||++-..
T Consensus       463 ~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~  496 (592)
T 3zwu_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGD  496 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCC
T ss_pred             cccccccCCCCCccCCcceEECCCCCEEEEecCC
Confidence                       01258999999999999998754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.45  E-value=9.7  Score=34.31  Aligned_cols=136  Identities=9%  Similarity=-0.030  Sum_probs=69.8

Q ss_pred             EEEEEeCCCCeEEEEecCccCC---CcEEEcCCCCEEEEEeCC--------CCeEEEEEecCCCCcceeeeeccCCC-CC
Q 016199          216 RLLSFDPVTKETKVLVSDLYFA---NGVVLSPDQTHLVYCETS--------MRRCRKFYIKGKNAGRVEKFIETLPG-LP  283 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~~~~l~~~---ngi~~s~dg~~l~v~~~~--------~~ri~~~~~~g~~~~~~~~~~~~l~g-~P  283 (393)
                      .+++||+.+++.+.+.. +..+   .+++.. ++ .+|+..-.        .+.+++|++...   +-+... .+|. .-
T Consensus        68 ~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~---~W~~~~-~~p~~r~  140 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPP-LPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSF---KWGESD-PLPYVVY  140 (315)
T ss_dssp             EEEEEETTTTEEEECCC-BSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTT---EEEECC-CCSSCCB
T ss_pred             ceEEecCCCCeEEECCC-CCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCC---cEeECC-CCCCccc
Confidence            48999999988876532 2222   233333 44 67766431        246899997543   222221 2221 11


Q ss_pred             CeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEE
Q 016199          284 DNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSA  362 (393)
Q Consensus       284 ~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~  362 (393)
                      ...+.--++++|+.......                            ......+.++|++...-..+.. +.......+
T Consensus       141 ~~~~~~~~~~iyv~GG~~~~----------------------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          141 GHTVLSHMDLVYVIGGKGSD----------------------------RKCLNKMCVYDPKKFEWKELAPMQTARSLFGA  192 (315)
T ss_dssp             SCEEEEETTEEEEECCBCTT----------------------------SCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             ceeEEEECCEEEEEeCCCCC----------------------------CcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence            11222245678875432100                            0112458899988776655543 322222334


Q ss_pred             EEeCCEEEEEe-cCC----CeEEEEeCCC
Q 016199          363 IKIGDHLYCGS-VHH----RGILHLDVNQ  386 (393)
Q Consensus       363 ~~~~g~Lyigs-~~~----~~i~~~~~~~  386 (393)
                      ...+++||+-+ ...    +.+.+||+..
T Consensus       193 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          193 TVHDGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             EEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             EEECCEEEEEeccCCCCccceEEEEECCC
Confidence            45577887754 322    2577787654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.26  E-value=10  Score=34.20  Aligned_cols=122  Identities=10%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             CcEEEEEeCCCCeEEEEecCccC---CCcEEEcCCCCEEEEEeCC------CCeEEEEEecCCCCcceeeeeccCCCCCC
Q 016199          214 NGRLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQTHLVYCETS------MRRCRKFYIKGKNAGRVEKFIETLPGLPD  284 (393)
Q Consensus       214 ~g~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~~l~v~~~~------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~  284 (393)
                      ...+++||+.+++.+.+.. +..   -...+. -++ .+|+..-.      .+.+++|++...   +-+... .+| .|.
T Consensus       116 ~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~-~~p-~~r  187 (315)
T 4asc_A          116 LDSVMCYDRLSFKWGESDP-LPYVVYGHTVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF---EWKELA-PMQ-TAR  187 (315)
T ss_dssp             CCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTT---EEEECC-CCS-SCC
T ss_pred             cceEEEECCCCCcEeECCC-CCCcccceeEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCC---eEEECC-CCC-Cch
Confidence            4569999999988876543 222   122333 344 57766533      246899997543   222221 222 121


Q ss_pred             ---eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccE
Q 016199          285 ---NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLIS  360 (393)
Q Consensus       285 ---~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~  360 (393)
                         ..+. -+|++|+.-.....                             .....+.++|++.+.-..+.. +......
T Consensus       188 ~~~~~~~-~~~~iyv~GG~~~~-----------------------------~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  237 (315)
T 4asc_A          188 SLFGATV-HDGRIIVAAGVTDT-----------------------------GLTSSAEVYSITDNKWAPFEAFPQERSSL  237 (315)
T ss_dssp             BSCEEEE-ETTEEEEEEEECSS-----------------------------SEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             hceEEEE-ECCEEEEEeccCCC-----------------------------CccceEEEEECCCCeEEECCCCCCcccce
Confidence               2222 25678875432210                             011358899988776666654 2222223


Q ss_pred             EEEEeCCEEEEEe
Q 016199          361 SAIKIGDHLYCGS  373 (393)
Q Consensus       361 ~~~~~~g~Lyigs  373 (393)
                      .+...+++||+-+
T Consensus       238 ~~~~~~~~l~v~G  250 (315)
T 4asc_A          238 SLVSLVGTLYAIG  250 (315)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             eEEEECCEEEEEC
Confidence            3445677887754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.06  E-value=9.9  Score=33.84  Aligned_cols=218  Identities=10%  Similarity=0.053  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCCcceeeeeecCC-Cce-eeeEECCCCCCCCceEEEEEeCC------CceEEEeCCc-e----EEEeecc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTG-GRP-LGIAFANSDPDADRITMIVADAY------KGLLKISGNS-T----VLLTDEA  171 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~-~~p-~gl~~d~~G~~~~~~~L~v~~~~------~gl~~id~~g-~----~~l~~~~  171 (393)
                      .+++|++.++.    +....... .+. ++++. -++      .||+....      ..++++|+.. .    +.+. ..
T Consensus        32 ~~~~~d~~~~~----W~~~~~~p~~r~~~~~~~-~~~------~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~   99 (301)
T 2vpj_A           32 VVEKYDPKTQE----WSFLPSITRKRRYVASVS-LHD------RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PM   99 (301)
T ss_dssp             CEEEEETTTTE----EEECCCCSSCCBSCEEEE-ETT------EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CC
T ss_pred             EEEEEcCCCCe----EEeCCCCChhhccccEEE-ECC------EEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CC
Confidence            57888887765    55543221 111 23333 356      78886332      2377888654 2    1221 11


Q ss_pred             CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-c-cCCCcEEEcCCCCEE
Q 016199          172 EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-L-YFANGVVLSPDQTHL  249 (393)
Q Consensus       172 ~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l-~~~ngi~~s~dg~~l  249 (393)
                      ..  .+.-+.+++. ++.||+.-...            .......+++||+.+++.+.+..- . ......+. -++ .+
T Consensus       100 p~--~r~~~~~~~~-~~~lyv~GG~~------------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~i  162 (301)
T 2vpj_A          100 NV--RRGLAGATTL-GDMIYVSGGFD------------GSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASG-VI  162 (301)
T ss_dssp             SS--CCBSCEEEEE-TTEEEEECCBC------------SSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETT-EE
T ss_pred             CC--CccceeEEEE-CCEEEEEcccC------------CCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECC-EE
Confidence            11  1222333333 67888763211            011234699999999888776431 1 11122333 355 57


Q ss_pred             EEEeCC-----CCeEEEEEecCCCCcceeeeeccCCCCCC---eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhh
Q 016199          250 VYCETS-----MRRCRKFYIKGKNAGRVEKFIETLPGLPD---NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGM  321 (393)
Q Consensus       250 ~v~~~~-----~~ri~~~~~~g~~~~~~~~~~~~l~g~P~---~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~  321 (393)
                      |+..-.     .+.+.+|++...   +-+... .+| .|.   .++. -++++|+.......                  
T Consensus       163 yv~GG~~~~~~~~~~~~~d~~~~---~W~~~~-~~p-~~r~~~~~~~-~~~~i~v~GG~~~~------------------  218 (301)
T 2vpj_A          163 YCLGGYDGLNILNSVEKYDPHTG---HWTNVT-PMA-TKRSGAGVAL-LNDHIYVVGGFDGT------------------  218 (301)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTT---EEEEEC-CCS-SCCBSCEEEE-ETTEEEEECCBCSS------------------
T ss_pred             EEECCCCCCcccceEEEEeCCCC---cEEeCC-CCC-cccccceEEE-ECCEEEEEeCCCCC------------------
Confidence            776422     356899997543   222221 222 121   2222 25677775332110                  


Q ss_pred             hhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEEEEeCCEEEEEecCC-----CeEEEEeCCC
Q 016199          322 VVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSAIKIGDHLYCGSVHH-----RGILHLDVNQ  386 (393)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~~~~~g~Lyigs~~~-----~~i~~~~~~~  386 (393)
                                 .....+.++|++...-..+.. +.......+...+++||+-+-..     +.+.+||++.
T Consensus       219 -----------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          219 -----------AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             -----------SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             -----------cccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCC
Confidence                       011458899988776666653 22222223344578888765322     4677888754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.75  E-value=11  Score=33.71  Aligned_cols=217  Identities=8%  Similarity=0.044  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCCcceeeeeecCC-Cc-eeeeEECCCCCCCCceEEEEEeCC------CceEEEeCCc-e-EEEeeccCCc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTG-GR-PLGIAFANSDPDADRITMIVADAY------KGLLKISGNS-T-VLLTDEAEGQ  174 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~-~~-p~gl~~d~~G~~~~~~~L~v~~~~------~gl~~id~~g-~-~~l~~~~~g~  174 (393)
                      .+.++++....    ++...... .+ -++++.. ++      .||+....      ..+.++|+.. . +.+.. ... 
T Consensus        31 ~~~~~d~~~~~----W~~~~~~p~~r~~~~~~~~-~~------~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~-   97 (302)
T 2xn4_A           31 SVECYDFKEER----WHQVAELPSRRCRAGMVYM-AG------LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN-MRD-   97 (302)
T ss_dssp             CEEEEETTTTE----EEEECCCSSCCBSCEEEEE-TT------EEEEESCBCSSSBCCCEEEEETTTTEEEEECC-CSS-
T ss_pred             cEEEEcCcCCc----EeEcccCCcccccceEEEE-CC------EEEEEeCcCCCccccceEEECCCCCceeeCCC-CCc-
Confidence            47778877654    55443221 11 1233333 56      88887432      2377888765 2 22221 111 


Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC---CcEEEcCCCCEEEE
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA---NGVVLSPDQTHLVY  251 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~---ngi~~s~dg~~l~v  251 (393)
                       .+.-+.+++ -+|.||+.-...            .......+++||+.+++.+.+.. +..+   ...+. -++ .+|+
T Consensus        98 -~r~~~~~~~-~~~~iyv~GG~~------------~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~iyv  160 (302)
T 2xn4_A           98 -RRSTLGAAV-LNGLLYAVGGFD------------GSTGLSSVEAYNIKSNEWFHVAP-MNTRRSSVGVGV-VGG-LLYA  160 (302)
T ss_dssp             -CCBSCEEEE-ETTEEEEEEEEC------------SSCEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETT-EEEE
T ss_pred             -cccceEEEE-ECCEEEEEcCCC------------CCccCceEEEEeCCCCeEeecCC-CCCcccCceEEE-ECC-EEEE
Confidence             122234433 367788752110            01123469999999988877643 2211   23333 244 6777


Q ss_pred             EeCC-------CCeEEEEEecCCCCcceeeeeccCCCCCC---eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhh
Q 016199          252 CETS-------MRRCRKFYIKGKNAGRVEKFIETLPGLPD---NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGM  321 (393)
Q Consensus       252 ~~~~-------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~---~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~  321 (393)
                      ..-.       ...+++|++...   +-+... .+| .|.   .++. -++++|+.-.....                  
T Consensus       161 ~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~-~~p-~~r~~~~~~~-~~~~iyv~GG~~~~------------------  216 (302)
T 2xn4_A          161 VGGYDVASRQCLSTVECYNATTN---EWTYIA-EMS-TRRSGAGVGV-LNNLLYAVGGHDGP------------------  216 (302)
T ss_dssp             ECCEETTTTEECCCEEEEETTTT---EEEEEC-CCS-SCCBSCEEEE-ETTEEEEECCBSSS------------------
T ss_pred             EeCCCCCCCccccEEEEEeCCCC---cEEECC-CCc-cccccccEEE-ECCEEEEECCCCCC------------------
Confidence            6421       356889997543   222221 222 121   2222 25677775332100                  


Q ss_pred             hhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEEEEeCCEEEEEecCC-----CeEEEEeCCC
Q 016199          322 VVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSAIKIGDHLYCGSVHH-----RGILHLDVNQ  386 (393)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~~~~~g~Lyigs~~~-----~~i~~~~~~~  386 (393)
                                 .....+.++|++...-..+.. +.......+...+++||+-+-..     +.+.+||++.
T Consensus       217 -----------~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          217 -----------LVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             -----------SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             -----------cccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCC
Confidence                       011358899988777666654 22222233445678888765322     3578888753

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.51  E-value=0.88  Score=42.66  Aligned_cols=25  Identities=12%  Similarity=0.294  Sum_probs=19.5

Q ss_pred             eCCEEEEEecCCCeEEEEeCCCCCC
Q 016199          365 IGDHLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       365 ~~g~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                      .++++|++.-.+..++.+....+|-
T Consensus       276 ~~~~v~v~~t~~G~~~Als~~~yp~  300 (339)
T 2be1_A          276 SSNKVYLDQTSNLSWFALSSQNFPS  300 (339)
T ss_dssp             --CCEEEEECTTCCEEEEETTTCHH
T ss_pred             cCCeEEEEECCCCcEEEecCCCCce
Confidence            4688999877788999999888764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.88  E-value=12  Score=33.32  Aligned_cols=220  Identities=10%  Similarity=0.044  Sum_probs=110.2

Q ss_pred             CeEEEEEcCCCCCcceeeeeecCC-Cc-eeeeEECCCCCCCCceEEEEEeCC-----CceEEEeCCc--eEEEeeccCCc
Q 016199          104 GWIKRVTLNDSPADSLVHNWINTG-GR-PLGIAFANSDPDADRITMIVADAY-----KGLLKISGNS--TVLLTDEAEGQ  174 (393)
Q Consensus       104 g~I~~~~~~~~~~~~~~~~~~~~~-~~-p~gl~~d~~G~~~~~~~L~v~~~~-----~gl~~id~~g--~~~l~~~~~g~  174 (393)
                      ..+++|++..+.    ++...... .+ -+.++. -++      .||+....     ..+.++|+..  -+.+.. ... 
T Consensus        24 ~~~~~~d~~~~~----W~~~~~~p~~r~~~~~~~-~~~------~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-~p~-   90 (306)
T 3ii7_A           24 QSCRYFNPKDYS----WTDIRCPFEKRRDAACVF-WDN------VVYILGGSQLFPIKRMDCYNVVKDSWYSKLG-PPT-   90 (306)
T ss_dssp             TSEEEEETTTTE----EEECCCCSCCCBSCEEEE-ETT------EEEEECCBSSSBCCEEEEEETTTTEEEEEEC-CSS-
T ss_pred             ceEEEecCCCCC----EecCCCCCcccceeEEEE-ECC------EEEEEeCCCCCCcceEEEEeCCCCeEEECCC-CCc-
Confidence            368889988765    55543321 11 123333 356      78887432     2377788765  122221 111 


Q ss_pred             cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC---CCcEEEcCCCCEEEE
Q 016199          175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQTHLVY  251 (393)
Q Consensus       175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~~l~v  251 (393)
                       .+.-+.++. -++.||+.-...           ........+++||+.+++.+.+.. +..   -...+. -++ .+|+
T Consensus        91 -~r~~~~~~~-~~~~iyv~GG~~-----------~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~iyv  154 (306)
T 3ii7_A           91 -PRDSLAACA-AEGKIYTSGGSE-----------VGNSALYLFECYDTRTESWHTKPS-MLTQRCSHGMVE-ANG-LIYV  154 (306)
T ss_dssp             -CCBSCEEEE-ETTEEEEECCBB-----------TTBSCCCCEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETT-EEEE
T ss_pred             -cccceeEEE-ECCEEEEECCCC-----------CCCcEeeeEEEEeCCCCceEeCCC-CcCCcceeEEEE-ECC-EEEE
Confidence             122233333 267888763110           011234569999999988877632 221   122332 344 6777


Q ss_pred             EeCC---------CCeEEEEEecCCCCcceeeeeccCCC-C-CCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhh
Q 016199          252 CETS---------MRRCRKFYIKGKNAGRVEKFIETLPG-L-PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSG  320 (393)
Q Consensus       252 ~~~~---------~~ri~~~~~~g~~~~~~~~~~~~l~g-~-P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~  320 (393)
                      ..-.         ...+++|++...   +-+... .+|. . --.++.- ++++|+.-.....                 
T Consensus       155 ~GG~~~~~~~~~~~~~~~~yd~~~~---~W~~~~-~~p~~r~~~~~~~~-~~~i~v~GG~~~~-----------------  212 (306)
T 3ii7_A          155 CGGSLGNNVSGRVLNSCEVYDPATE---TWTELC-PMIEARKNHGLVFV-KDKIFAVGGQNGL-----------------  212 (306)
T ss_dssp             ECCEESCTTTCEECCCEEEEETTTT---EEEEEC-CCSSCCBSCEEEEE-TTEEEEECCEETT-----------------
T ss_pred             ECCCCCCCCcccccceEEEeCCCCC---eEEECC-CccchhhcceEEEE-CCEEEEEeCCCCC-----------------
Confidence            6521         456889997543   222222 2221 1 1122222 5677775321100                 


Q ss_pred             hhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEEEEeCCEEEEEec-----CCCeEEEEeCCC
Q 016199          321 MVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSAIKIGDHLYCGSV-----HHRGILHLDVNQ  386 (393)
Q Consensus       321 ~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~~~~~g~Lyigs~-----~~~~i~~~~~~~  386 (393)
                                  .....+.++|++.+.-..+.. +.......+...+++||+-+-     ..+.+.+||++.
T Consensus       213 ------------~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          213 ------------GGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             ------------EEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             ------------CCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence                        001348889988776666543 221112233444788887653     235678888754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=88.65  E-value=24  Score=36.39  Aligned_cols=154  Identities=11%  Similarity=0.102  Sum_probs=76.6

Q ss_pred             ceEEEecCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCC---Cce
Q 016199           86 EDLLYDAHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAY---KGL  156 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl  156 (393)
                      .+++|++||+.|+....+     ..|++++..++.... ...+... ...-.++.+.+||     +.|++....   ..|
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~-~lv~~~~~~~~~~~~~~SpDg-----~~l~~~~~~~~~~~l  297 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSED-VCLYEEHNPLFSAFMYKAADT-----NTLCIGSQSPETAEV  297 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGC-EEEEECCCTTCEEEEEECTTS-----SEEEEEEECSSCEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhc-EEEEecCCCceEEEEEECCCC-----CEEEEEecCCCCceE
Confidence            357899999866655443     268888887653110 1122111 1223567788898     245544322   237


Q ss_pred             EEEeCCc----e--EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-CeEEE
Q 016199          157 LKISGNS----T--VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-KETKV  229 (393)
Q Consensus       157 ~~id~~g----~--~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-~~~~~  229 (393)
                      +.++.++    .  +.+.....+.    ...+....++.|||.....             +....+|+++|.++ +..+.
T Consensus       298 ~~~d~~~~~~~~~~~~l~~~~~~~----~~s~~~~~g~~l~~~t~~~-------------~a~~~~L~~~d~~~~~~~~~  360 (751)
T 2xe4_A          298 HLLDLRKGNAHNTLEIVRPREKGV----RYDVQMHGTSHLVILTNEG-------------GAVNHKLLIAPRGQPSDWSH  360 (751)
T ss_dssp             EEEESSSCTTCCCEEESSCCCTTC----CEEEEEETTTEEEEEECTT-------------TCTTCEEEEEETTSTTCCCC
T ss_pred             EEEECCCCCCCceeEEeecCCCCc----eEEEeeeeCCEEEEEeCCC-------------CCCCcEEEEEcCCCccccee
Confidence            7777653    2  2222111111    1122212234666653110             02345899999875 34333


Q ss_pred             -EecCcc--CCCcEEEcCCCCEEEEEeCCCC--eEEEEEe
Q 016199          230 -LVSDLY--FANGVVLSPDQTHLVYCETSMR--RCRKFYI  264 (393)
Q Consensus       230 -~~~~l~--~~ngi~~s~dg~~l~v~~~~~~--ri~~~~~  264 (393)
                       +.....  ...++++  +++.++++...++  +|+.+++
T Consensus       361 ~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          361 VLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred             eEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence             322211  1233444  4567888776554  5777775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=88.21  E-value=4.6  Score=41.06  Aligned_cols=112  Identities=11%  Similarity=0.066  Sum_probs=64.6

Q ss_pred             eeeeEECC-CCCCCCceEEEEEeCCC------------ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEe
Q 016199          130 PLGIAFAN-SDPDADRITMIVADAYK------------GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTD  194 (393)
Q Consensus       130 p~gl~~d~-~G~~~~~~~L~v~~~~~------------gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td  194 (393)
                      +...++.+ +|      +||+.....            -+..+|+..  -+.+.. .......++.++++..+|.||+.-
T Consensus       188 ~~~~av~~~~g------~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-~~~~~~~~~~~~~~~~~g~lyv~G  260 (656)
T 1k3i_A          188 PAAAAIEPTSG------RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV-TVTKHDMFCPGISMDGNGQIVVTG  260 (656)
T ss_dssp             CSEEEEETTTT------EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE-EECSCCCSSCEEEECTTSCEEEEC
T ss_pred             ceeEEEEecCC------EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc-cCCCCCCccccccCCCCCCEEEeC
Confidence            45667666 78      888863211            256677654  111111 111112345567778899999873


Q ss_pred             CCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC---CCcEEEcCCCCEEEEEeC-CC-----CeEEEEEec
Q 016199          195 ASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQTHLVYCET-SM-----RRCRKFYIK  265 (393)
Q Consensus       195 ~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~~l~v~~~-~~-----~ri~~~~~~  265 (393)
                      .                .....+++||+.+++.+.+. .+..   -...++.+||+ +|+..- ..     ..+.+||+.
T Consensus       261 G----------------~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          261 G----------------NDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             S----------------SSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETT
T ss_pred             C----------------CCCCceEEecCcCCceeECC-CCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCC
Confidence            1                11236999999988877653 2222   24556667886 555443 22     468889875


Q ss_pred             C
Q 016199          266 G  266 (393)
Q Consensus       266 g  266 (393)
                      .
T Consensus       323 t  323 (656)
T 1k3i_A          323 S  323 (656)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.95  E-value=15  Score=33.01  Aligned_cols=217  Identities=10%  Similarity=0.044  Sum_probs=108.7

Q ss_pred             eEEEEEcCCCCCcceeeeeecCC-Cc-eeeeEECCCCCCCCceEEEEEeCC----------CceEEEeCCc-e-EEEeec
Q 016199          105 WIKRVTLNDSPADSLVHNWINTG-GR-PLGIAFANSDPDADRITMIVADAY----------KGLLKISGNS-T-VLLTDE  170 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~-~~-p~gl~~d~~G~~~~~~~L~v~~~~----------~gl~~id~~g-~-~~l~~~  170 (393)
                      .+++|++..+.    ++...... .+ -++++.. ++      .||+....          ..+.++|+.. . +.+.. 
T Consensus        40 ~~~~~d~~~~~----W~~~~~~p~~r~~~~~~~~-~~------~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-  107 (308)
T 1zgk_A           40 YLEAYNPSNGT----WLRLADLQVPRSGLAGCVV-GG------LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP-  107 (308)
T ss_dssp             CEEEEETTTTE----EEECCCCSSCCBSCEEEEE-TT------EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC-
T ss_pred             eEEEEcCCCCe----EeECCCCCcccccceEEEE-CC------EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC-
Confidence            57888887665    55543211 11 1233333 56      88887332          2367778755 1 22221 


Q ss_pred             cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC---CCcEEEcCCCC
Q 016199          171 AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQT  247 (393)
Q Consensus       171 ~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~  247 (393)
                      ...  .+.-+.+++. +|.||+.-...            .......+++||+.+++.+.+.. +..   ....++. ++ 
T Consensus       108 ~p~--~r~~~~~~~~-~~~iyv~GG~~------------~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~-  169 (308)
T 1zgk_A          108 MSV--PRNRIGVGVI-DGHIYAVGGSH------------GCIHHNSVERYEPERDEWHLVAP-MLTRRIGVGVAVL-NR-  169 (308)
T ss_dssp             CSS--CCBTCEEEEE-TTEEEEECCEE------------TTEECCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE-TT-
T ss_pred             CCc--CccccEEEEE-CCEEEEEcCCC------------CCcccccEEEECCCCCeEeECCC-CCccccceEEEEE-CC-
Confidence            111  1222333333 67888762110            00112459999999988876542 221   1233332 44 


Q ss_pred             EEEEEeCC-----CCeEEEEEecCCCCcceeeeeccCCCCCC---eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199          248 HLVYCETS-----MRRCRKFYIKGKNAGRVEKFIETLPGLPD---NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS  319 (393)
Q Consensus       248 ~l~v~~~~-----~~ri~~~~~~g~~~~~~~~~~~~l~g~P~---~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~  319 (393)
                      .+|+..-.     .+.+.+|++...+   -+... .+| .|.   .++.. ++.+|+.-.....                
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~-~~p-~~r~~~~~~~~-~~~iyv~GG~~~~----------------  227 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNE---WRMIT-AMN-TIRSGAGVCVL-HNCIYAAGGYDGQ----------------  227 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTE---EEECC-CCS-SCCBSCEEEEE-TTEEEEECCBCSS----------------
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCe---EeeCC-CCC-CccccceEEEE-CCEEEEEeCCCCC----------------
Confidence            67776422     3568999975432   22221 222 121   23332 5677775332110                


Q ss_pred             hhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEEEEeCCEEEEEecC-----CCeEEEEeCCC
Q 016199          320 GMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSAIKIGDHLYCGSVH-----HRGILHLDVNQ  386 (393)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~~~~~g~Lyigs~~-----~~~i~~~~~~~  386 (393)
                                   .....+.++|++.+.-..+.. +.......+...+++||+-+-.     .+.+.+||++.
T Consensus       228 -------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          228 -------------DQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             -------------SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             -------------CccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCC
Confidence                         011458899988776666553 2222222334457888876431     35677888754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=84.79  E-value=37  Score=34.68  Aligned_cols=135  Identities=6%  Similarity=0.091  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCCcceeeeee-c------CCCc-eeeeEECC-CCCCCCceEEEEEeCC-------CceEEEeCCc-e-EE
Q 016199          105 WIKRVTLNDSPADSLVHNWI-N------TGGR-PLGIAFAN-SDPDADRITMIVADAY-------KGLLKISGNS-T-VL  166 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~-~------~~~~-p~gl~~d~-~G~~~~~~~L~v~~~~-------~gl~~id~~g-~-~~  166 (393)
                      .+++|++.++.    +.... .      ...+ -++++.-. +|      +|||....       .-+.++|+.. . +.
T Consensus       413 ~v~~yd~~~~~----W~~~~~~~p~~~~p~~R~~hs~~~~~~~~------~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~  482 (695)
T 2zwa_A          413 EILQLSIHYDK----IDMKNIEVSSSEVPVARMCHTFTTISRNN------QLLLIGGRKAPHQGLSDNWIFDMKTREWSM  482 (695)
T ss_dssp             CEEEEEECSSC----EEEEECCCCCSCCCCCCBSCEEEEETTTT------EEEEECCBSSTTCBCCCCEEEETTTTEEEE
T ss_pred             cEEEEECCCCe----EEEeccCCCCCCCCccccceEEEEEccCC------EEEEEcCCCCCCCccccEEEEeCCCCcEEE
Confidence            58899998776    76665 2      1111 13444443 77      88887432       2267788765 1 12


Q ss_pred             EeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--cc---CCCc-E
Q 016199          167 LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LY---FANG-V  240 (393)
Q Consensus       167 l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~---~~ng-i  240 (393)
                      +. ...  .-+.-+..++-.+|.||+.-..               ...+.+++||+.+++.+.+...  ..   .-.. +
T Consensus       483 ~~-~~p--~~R~~h~~~~~~~~~iyv~GG~---------------~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~  544 (695)
T 2zwa_A          483 IK-SLS--HTRFRHSACSLPDGNVLILGGV---------------TEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL  544 (695)
T ss_dssp             CC-CCS--BCCBSCEEEECTTSCEEEECCB---------------CSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred             CC-CCC--CCcccceEEEEcCCEEEEECCC---------------CCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence            21 111  1233345555457888886211               1111699999999988876531  21   1123 4


Q ss_pred             EEcCCCCEEEEEeCC-------CCeEEEEEecCC
Q 016199          241 VLSPDQTHLVYCETS-------MRRCRKFYIKGK  267 (393)
Q Consensus       241 ~~s~dg~~l~v~~~~-------~~ri~~~~~~g~  267 (393)
                      .+..+...+|+..-.       .+.+++|++...
T Consensus       545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            455553467777532       357999998754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=83.50  E-value=11  Score=35.09  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=19.2

Q ss_pred             CCEEEEEecCCeEEEEEcCCCC
Q 016199           94 SKLIYTGCEDGWIKRVTLNDSP  115 (393)
Q Consensus        94 g~~L~~~~~~g~I~~~~~~~~~  115 (393)
                      ++.+|+++.+|+++.++..+++
T Consensus       111 ~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A          111 DEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             CEEEEECEEEEEEEEEETTTCC
T ss_pred             CCEEEEEecCCEEEEEECCCCc
Confidence            3479999999999999998875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=82.03  E-value=27  Score=30.99  Aligned_cols=136  Identities=10%  Similarity=-0.006  Sum_probs=71.7

Q ss_pred             CcEEEEEeCCCCeEEEEecCccC---CCcEEEcCCCCEEEEEeC----CCCeEEEEEecCCCCcceeeeeccCCCCCC--
Q 016199          214 NGRLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQTHLVYCET----SMRRCRKFYIKGKNAGRVEKFIETLPGLPD--  284 (393)
Q Consensus       214 ~g~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~~l~v~~~----~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~--  284 (393)
                      ...+++||+.+++.+.+.. +..   -..++. -++ .+|+..-    ..+.+++|++...   +-+... .+| .|.  
T Consensus        23 ~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~d~~~~---~W~~~~-~~p-~~r~~   94 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRC-PFEKRRDAACVF-WDN-VVYILGGSQLFPIKRMDCYNVVKD---SWYSKL-GPP-TPRDS   94 (306)
T ss_dssp             TTSEEEEETTTTEEEECCC-CSCCCBSCEEEE-ETT-EEEEECCBSSSBCCEEEEEETTTT---EEEEEE-CCS-SCCBS
T ss_pred             CceEEEecCCCCCEecCCC-CCcccceeEEEE-ECC-EEEEEeCCCCCCcceEEEEeCCCC---eEEECC-CCC-ccccc
Confidence            3469999999988876632 221   122333 344 5776653    2367899997543   222222 233 121  


Q ss_pred             -eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEE
Q 016199          285 -NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSA  362 (393)
Q Consensus       285 -~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~  362 (393)
                       ..+. -+|.+|+......                            .......+.++|++...-..+.. +.......+
T Consensus        95 ~~~~~-~~~~iyv~GG~~~----------------------------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  145 (306)
T 3ii7_A           95 LAACA-AEGKIYTSGGSEV----------------------------GNSALYLFECYDTRTESWHTKPSMLTQRCSHGM  145 (306)
T ss_dssp             CEEEE-ETTEEEEECCBBT----------------------------TBSCCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             eeEEE-ECCEEEEECCCCC----------------------------CCcEeeeEEEEeCCCCceEeCCCCcCCcceeEE
Confidence             1222 2577887533110                            00111358899988776655543 222222233


Q ss_pred             EEeCCEEEEEecC---------CCeEEEEeCCC
Q 016199          363 IKIGDHLYCGSVH---------HRGILHLDVNQ  386 (393)
Q Consensus       363 ~~~~g~Lyigs~~---------~~~i~~~~~~~  386 (393)
                      ...+++||+-+-.         .+.+.+||+..
T Consensus       146 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             EEETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             EEECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            4468888886531         34577787654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=80.78  E-value=31  Score=30.87  Aligned_cols=135  Identities=12%  Similarity=0.031  Sum_probs=68.6

Q ss_pred             EEEEEeCCCCeEEEEecCccC---CCcEEEcCCCCEEEEEeCCC-------CeEEEEEecCCCCcceeeeeccCCC-C-C
Q 016199          216 RLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQTHLVYCETSM-------RRCRKFYIKGKNAGRVEKFIETLPG-L-P  283 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~~l~v~~~~~-------~ri~~~~~~g~~~~~~~~~~~~l~g-~-P  283 (393)
                      .+++||+.+++.+.+.. +..   -.+++.. ++ .+|+..-..       +.+++|++...   +-+... .+|. . -
T Consensus        79 ~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~-~~p~~r~~  151 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLPP-LPSARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAA---KWSEVK-NLPIKVYG  151 (318)
T ss_dssp             EEEEEETTTTEEEECSC-BSSCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTT---EEEEEC-CCSSCEES
T ss_pred             cEEEEeCCCCcEEECCC-CCccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCC---CEeECC-CCCCcccc
Confidence            48999999988876532 222   2333333 44 566654321       35888887533   222221 2221 0 1


Q ss_pred             CeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEE
Q 016199          284 DNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSA  362 (393)
Q Consensus       284 ~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~  362 (393)
                      -..+. -+|.+|+.-.....                            ......+.++|++.+.-..+.. +.......+
T Consensus       152 ~~~~~-~~~~iyv~GG~~~~----------------------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  202 (318)
T 2woz_A          152 HNVIS-HNGMIYCLGGKTDD----------------------------KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV  202 (318)
T ss_dssp             CEEEE-ETTEEEEECCEESS----------------------------SCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cEEEE-ECCEEEEEcCCCCC----------------------------CCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence            12223 46778874321100                            0011458899988776665543 222222233


Q ss_pred             EEeCCEEEEEec-CC----CeEEEEeCCC
Q 016199          363 IKIGDHLYCGSV-HH----RGILHLDVNQ  386 (393)
Q Consensus       363 ~~~~g~Lyigs~-~~----~~i~~~~~~~  386 (393)
                      ...+++||+-+- ..    +.+.+||++.
T Consensus       203 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          203 AIHKGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EEETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             EEECCEEEEEcCcCCCCccceEEEEECCC
Confidence            446778777642 22    3566777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	393
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	3e-31
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	0.001
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	0.004

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  119 bits (299), Expect = 3e-31
 Identities = 44/329 (13%), Positives = 90/329 (27%), Gaps = 53/329 (16%)

Query: 80  GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV------------------H 121
           G+  G EDL     + L +      +   ++ +   +  ++                  +
Sbjct: 32  GIDNGSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN 90

Query: 122 NWINTGGRPLGIAFANSDPDADRITMIVADAYKG-----LLKISGNSTVLLTDEAEGQKF 176
               +   P GI+    D +   + ++              +    S + L         
Sbjct: 91  TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLP 150

Query: 177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF 236
            + D V V  +      D        +   ++  G     +  + P   + +V+     F
Sbjct: 151 SVNDIVAVGPEHFYATNDHYFIDPYLKS-WEMHLGLAWSFVTYYSP--NDVRVVAEGFDF 207

Query: 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI 296
           ANG+ +SPD  ++   E    +   +           + +     L DNI  D     L 
Sbjct: 208 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLW 266

Query: 297 ALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVF----IVDLDGKPIAHYY 352
                                     +R           S V     I+  + K    Y 
Sbjct: 267 VGCHPNG-------------------MRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYA 307

Query: 353 DP--EMSLISSAIKIGDHLYCGSVHHRGI 379
           +    +   + A      L  G+V H+ +
Sbjct: 308 ENGTVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 25/171 (14%), Positives = 45/171 (26%), Gaps = 20/171 (11%)

Query: 176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL----- 230
               +G     +G  Y      +            GKP G +L  D  T +  V+     
Sbjct: 17  IPGAEGPVFDKNGDFYIVAPEVEVN----------GKPAGEILRIDLKTGKKTVICKPEV 66

Query: 231 VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYD 289
                   G     D   L +              G      +K  E       ++  +D
Sbjct: 67  NGYGGIPAGCQCDRDANQL-FVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD 125

Query: 290 GEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFI 340
            EG+  I   T  +     A     +++  G +  +     M +  +    
Sbjct: 126 YEGNLWI---TAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQF 173

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 24/215 (11%), Positives = 56/215 (26%), Gaps = 25/215 (11%)

Query: 175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSD 233
           K    +G++    G ++  D                    G +   +P TKE K   VS 
Sbjct: 38  KGLQLEGLNFDRQGQLFLLDV-----------------FEGNIFKINPETKEIKRPFVSH 80

Query: 234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGL--PDNIRYDGE 291
                 + +  D    V      +     +   +N   ++  IE L      D++ +D +
Sbjct: 81  KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK 140

Query: 292 GHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGK 346
           G +                + ++  +  +  +   +    G+                 +
Sbjct: 141 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR 200

Query: 347 PIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILH 381
                 + +   I        + + G         
Sbjct: 201 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 235

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	393
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.94
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.94
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.85
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.8
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.73
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.59
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.56
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.55
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.51
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.5
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.45
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.45
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.29
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.24
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.19
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.1
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.01
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.98
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.9
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.82
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.79
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.71
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.69
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.62
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.58
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.54
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.53
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.52
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.51
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.47
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.46
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.45
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.44
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.44
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.4
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.39
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.38
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.29
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.21
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.2
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.2
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.2
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.15
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.1
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.09
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.01
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.99
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.84
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.81
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.74
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	97.52
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.36
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.29
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.08
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.81
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.77
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.51
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.35
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.92
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.88
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	95.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.67
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.61
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.0
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	94.95
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.68
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.57
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.33
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	89.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.59
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.2
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.03
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	85.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	84.62
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	83.62
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	81.83

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=1.2e-27  Score=225.44  Aligned_cols=263  Identities=18%  Similarity=0.273  Sum_probs=194.9

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEec--------CCeEEEEEcCCCCCcceeeeeec-----CCCceeeeEECCCCC
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCE--------DGWIKRVTLNDSPADSLVHNWIN-----TGGRPLGIAFANSDP  140 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~--------~g~I~~~~~~~~~~~~~~~~~~~-----~~~~p~gl~~d~~G~  140 (393)
                      .+++.++ +.+||++++|++|+ ||+.+.        +|+|++++++++.    ...+..     ..+.|.||+++++| 
T Consensus        10 ~~~v~~~-~~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~----~~~~~~~~~~~~~g~P~Gl~~~~dg-   82 (314)
T d1pjxa_          10 FTKVTED-IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGK----KTVICKPEVNGYGGIPAGCQCDRDA-   82 (314)
T ss_dssp             CEEEECC-CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCC----EEEEECCEETTEECCEEEEEECSSS-
T ss_pred             eEEeecC-CCCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCc----EEEEECCccccCCCcceeEEEeCCC-
Confidence            3556565 69999999999998 776543        4679999998765    443321     23569999999987 


Q ss_pred             CCCceEEEEEeCCCceEEEeCCc-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEE
Q 016199          141 DADRITMIVADAYKGLLKISGNS-T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLL  218 (393)
Q Consensus       141 ~~~~~~L~v~~~~~gl~~id~~g-~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~  218 (393)
                          +.||+++...++.+++++| . +.+....++.+++.+|++++|++|++||+|.+..........  ......|+||
T Consensus        83 ----~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~--~~~~~~G~v~  156 (314)
T d1pjxa_          83 ----NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR--SMQEKFGSIY  156 (314)
T ss_dssp             ----SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB--TTSSSCEEEE
T ss_pred             ----CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccc--eeccCCceEE
Confidence                2689999889999999998 4 333445667778889999999999999999765443322221  1224578999


Q ss_pred             EEeCCCCeEEEEecCccCCCcEEEcCCCC----EEEEEeCCCCeEEEEEecCCC-Ccceeeeec---cCCCCCCeEEECC
Q 016199          219 SFDPVTKETKVLVSDLYFANGVVLSPDQT----HLVYCETSMRRCRKFYIKGKN-AGRVEKFIE---TLPGLPDNIRYDG  290 (393)
Q Consensus       219 ~~d~~t~~~~~~~~~l~~~ngi~~s~dg~----~l~v~~~~~~ri~~~~~~g~~-~~~~~~~~~---~l~g~P~~i~~d~  290 (393)
                      +++++ ++...+..++..|||+++++|++    .||++++..++|++|+++++. ....+.+.+   ...+.|||+++|+
T Consensus       157 ~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~  235 (314)
T d1pjxa_         157 CFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             EECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             EEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec
Confidence            99987 56666777889999999998875    799999999999999987542 223334432   1234699999999


Q ss_pred             CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCC-cEEEEeeCCCC--CccEEEEEeCC
Q 016199          291 EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDG-KPIAHYYDPEM--SLISSAIKIGD  367 (393)
Q Consensus       291 ~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~d~~~--~~~~~~~~~~g  367 (393)
                      +|++||+.+..                                  +.|.+||++| +....+..+..  ..+++ ..+++
T Consensus       236 ~GnlyVa~~~~----------------------------------g~I~~~dp~~g~~~~~i~~p~~~~t~~af-g~d~~  280 (314)
T d1pjxa_         236 DNNLLVANWGS----------------------------------SHIEVFGPDGGQPKMRIRCPFEKPSNLHF-KPQTK  280 (314)
T ss_dssp             TCCEEEEEETT----------------------------------TEEEEECTTCBSCSEEEECSSSCEEEEEE-CTTSS
T ss_pred             CCcEEEEEcCC----------------------------------CEEEEEeCCCCEEEEEEECCCCCEEEEEE-eCCCC
Confidence            99999998855                                  5799999985 45666776542  22222 23345


Q ss_pred             EEEEEecCCCeEEEEeCC
Q 016199          368 HLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       368 ~Lyigs~~~~~i~~~~~~  385 (393)
                      .||+++..+..|.++++.
T Consensus       281 ~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         281 TIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEETTTTEEEEEECS
T ss_pred             EEEEEECCCCcEEEEECC
Confidence            799999889999999973

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.94  E-value=2.1e-24  Score=204.79  Aligned_cols=279  Identities=17%  Similarity=0.214  Sum_probs=193.5

Q ss_pred             ceEEecCccCCCceEEEecCCCEEEEEec-------------CCeEEEEEcCCCCCcceeeee--e-c----CCCceeee
Q 016199           74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCE-------------DGWIKRVTLNDSPADSLVHNW--I-N----TGGRPLGI  133 (393)
Q Consensus        74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-------------~g~I~~~~~~~~~~~~~~~~~--~-~----~~~~p~gl  133 (393)
                      |+.+ +|...|||+|+++++|. +|+++.             .|.|+.++.+.....  ...+  . .    ....|+||
T Consensus        27 C~~i-~g~~~G~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~--~~~l~~~~~~~~~~~f~PhGi  102 (340)
T d1v04a_          27 CNLV-KGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA--VSELEIIGNTLDISSFNPHGI  102 (340)
T ss_dssp             CEEC-TTCCSCCCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCC--EEECEEECSSSCGGGCCEEEE
T ss_pred             ceEc-CCCCCCcceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCc--ceEEEecCCCCCCcceeccce
Confidence            4444 67678999999999984 776653             378999988754311  1111  1 1    12479998


Q ss_pred             EE--CCCCCCCCceEEEEEeCCCc-----eEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhe
Q 016199          134 AF--ANSDPDADRITMIVADAYKG-----LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       134 ~~--d~~G~~~~~~~L~v~~~~~g-----l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~  205 (393)
                      .+  +.+|    +..|+|.++..+     ++.++.++ .-.+........+..+|+|++..+|.+|+|+...........
T Consensus       103 ~l~~~~dg----~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~  178 (340)
T d1v04a_         103 STFIDDDN----TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS  178 (340)
T ss_dssp             EEEECTTC----CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHH
T ss_pred             eEEEcCCC----cEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhh
Confidence            76  4455    226888877322     56666655 223333455556678999999999999999754322222223


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN  285 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~  285 (393)
                      ++.+.+.+.+.++.||+  ++.+.+++++.+||||++++|++.+||+++..++|.+|++++++......+. .+++.|||
T Consensus       179 ~e~~~~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDN  255 (340)
T d1v04a_         179 WEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDN  255 (340)
T ss_dssp             HHHHTTCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEE
T ss_pred             hhHhhcCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCc
Confidence            44455677889999986  4567788899999999999999999999999999999999876544444444 58999999


Q ss_pred             EEECC-CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEE----CCCCcEEEEeeCCC--CCc
Q 016199          286 IRYDG-EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIV----DLDGKPIAHYYDPE--MSL  358 (393)
Q Consensus       286 i~~d~-~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~----d~~g~~~~~~~d~~--~~~  358 (393)
                      |.+|+ +|.+|++.......+..   ..+                 .......++++    ..++++.+.|++..  +..
T Consensus       256 i~~d~~~g~lwva~~p~~~~~~~---~~~-----------------~~~~~s~v~ri~~~~~~~~~v~~~~~~~G~~~~~  315 (340)
T d1v04a_         256 ISVDPVTGDLWVGCHPNGMRIFF---YDA-----------------ENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQG  315 (340)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHS---CCT-----------------TSCCCEEEEEEECTTSSSCEEEEEEEECSSSSCS
T ss_pred             cEEecCCCEEEEEECCcccchhh---hcc-----------------cCCCCceeEEEEeccCCCCeEEEEEeCCCcEeec
Confidence            99996 68899998754322111   111                 01111345555    23577888887643  778


Q ss_pred             cEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          359 ISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       359 ~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                      .+.+.+.+|+||+||+.+++| .|++
T Consensus       316 ~T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         316 STVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             EEEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             eEEEEEECCEEEEEeeeCCce-EecC
Confidence            888999999999999999988 5764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.94  E-value=1.3e-24  Score=202.72  Aligned_cols=240  Identities=18%  Similarity=0.201  Sum_probs=183.4

Q ss_pred             ceEEEecCCCEEE-EEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199           86 EDLLYDAHSKLIY-TGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-  163 (393)
Q Consensus        86 e~ia~d~~g~~L~-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-  163 (393)
                      |+..||++.+.|| +....++|++++++++.    ...+. ....|.+++.+++|      +||++. ..||+++|+++ 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~----~~~~~-~~~~~~~i~~~~dg------~l~va~-~~gl~~~d~~tg   88 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGR----KTVHA-LPFMGSALAKISDS------KQLIAS-DDGLFLRDTATG   88 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTE----EEEEE-CSSCEEEEEEEETT------EEEEEE-TTEEEEEETTTC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCe----EEEEE-CCCCcEEEEEecCC------CEEEEE-eCccEEeecccc
Confidence            4566897555455 55568899999999875    55453 35678999999999      999995 57999999875 


Q ss_pred             -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVL  242 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~  242 (393)
                       .+.+.....+.+...+|++.+|++|++||++...           .+....+.+++++.  ++.+.+..++..+||+++
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~-----------~~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~  155 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGR-----------KAETGAGSIYHVAK--GKVTKLFADISIPNSICF  155 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEET-----------TCCTTCEEEEEEET--TEEEEEEEEESSEEEEEE
T ss_pred             eeeEEeeeecCCCcccceeeEECCCCCEEEEeccc-----------cccccceeEeeecC--CcEEEEeeccCCcceeee
Confidence             5666554445555668999999999999997432           11234567888763  677778888899999999


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecCCC---Ccceeeeec--cCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhh
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKGKN---AGRVEKFIE--TLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRK  317 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g~~---~~~~~~~~~--~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~  317 (393)
                      ++|++.+|++++..++|++|+++.+.   .++...+.+  ...+.|+|+++|++|++|+|.+.+                
T Consensus       156 s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~----------------  219 (295)
T d2ghsa1         156 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE----------------  219 (295)
T ss_dssp             CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT----------------
T ss_pred             cCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC----------------
Confidence            99999999999999999999987542   233444442  345789999999999999999865                


Q ss_pred             hhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecC-------------CCeEEEE
Q 016199          318 VSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVH-------------HRGILHL  382 (393)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~-------------~~~i~~~  382 (393)
                                        +.|.+||++|+++..+..|.  ...+++.-++.+.||+++..             +..|.++
T Consensus       220 ------------------g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~  281 (295)
T d2ghsa1         220 ------------------GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFEL  281 (295)
T ss_dssp             ------------------TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEEC
T ss_pred             ------------------CceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEE
Confidence                              67999999999999999876  33444444566899999875             3467777


Q ss_pred             eC
Q 016199          383 DV  384 (393)
Q Consensus       383 ~~  384 (393)
                      ++
T Consensus       282 ~~  283 (295)
T d2ghsa1         282 GI  283 (295)
T ss_dssp             SS
T ss_pred             cC
Confidence            65

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=1.3e-24  Score=204.77  Aligned_cols=245  Identities=17%  Similarity=0.247  Sum_probs=178.4

Q ss_pred             CCCceEEEecCCCEEEE-EecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-----Cce
Q 016199           83 KGPEDLLYDAHSKLIYT-GCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-----KGL  156 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~-~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-----~gl  156 (393)
                      ...|++++|++|+ ||+ ...+++|++++++++.   ....+......|.+|+++++|      +|||++..     .++
T Consensus        40 ~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~---~~~~~~~~~~~p~gla~~~dG------~l~va~~~~~~~~~~i  109 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHKDG------RLFVCYLGDFKSTGGI  109 (319)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECTTS------CEEEEECTTSSSCCEE
T ss_pred             cCcEeCEECCCCC-EEEEECCCCEEEEEECCCCe---EEEEEeCCCCCeeEEEECCCC------CEEEEecCCCccceeE
Confidence            3458999999998 655 4568899999998765   123334456789999999999      99999753     347


Q ss_pred             EEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc
Q 016199          157 LKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL  234 (393)
Q Consensus       157 ~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l  234 (393)
                      +.++.++  ...+...  ......+|+++++++|++|++|....           .....+.+++++++++.++.+..++
T Consensus       110 ~~~~~~~~~~~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~  176 (319)
T d2dg1a1         110 FAATENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNI  176 (319)
T ss_dssp             EEECTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEE
T ss_pred             EEEcCCCceeeeeccC--CCcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeecc
Confidence            8888776  3333222  12235688999999999999985431           1134678999999988888888889


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCc-c---ee-eeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhh
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAG-R---VE-KFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLA  309 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~-~---~~-~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~  309 (393)
                      ..||||++++|++.+|++++..++|++|+++.+... .   .. .......+.|||+++|++|++||+....        
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~--------  248 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ--------  248 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT--------
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC--------
Confidence            999999999999999999999999999999754211 1   11 1111223459999999999999999865        


Q ss_pred             hcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-----CCc-cEEEEE-eCCEEEEEec-----CCC
Q 016199          310 YRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-----MSL-ISSAIK-IGDHLYCGSV-----HHR  377 (393)
Q Consensus       310 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-----~~~-~~~~~~-~~g~Lyigs~-----~~~  377 (393)
                                                +.|.+||++|+++..+..|.     ... .+.... ....||+.+.     .+.
T Consensus       249 --------------------------g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g  302 (319)
T d2dg1a1         249 --------------------------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGS  302 (319)
T ss_dssp             --------------------------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCE
T ss_pred             --------------------------CEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCce
Confidence                                      67999999999999988664     111 222222 3467888753     234


Q ss_pred             eEEEEeC
Q 016199          378 GILHLDV  384 (393)
Q Consensus       378 ~i~~~~~  384 (393)
                      .|.+++.
T Consensus       303 ~l~~~~~  309 (319)
T d2dg1a1         303 MLYTVNG  309 (319)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEeC
Confidence            6777775

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.86  E-value=5.3e-20  Score=171.26  Aligned_cols=223  Identities=15%  Similarity=0.129  Sum_probs=160.0

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id  160 (393)
                      ..||++|+++||+ ||++.. +++|+++++++.     .+.+....+.|.+++++++|      ++|+++...+ +..++
T Consensus        28 ~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-----~~~~~~~~~~~~gla~~~dG------~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          28 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-----QQIHATVEGKVSGLAFTSNG------DLVATGWNADSIPVVS   95 (302)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-----EEEEEECSSEEEEEEECTTS------CEEEEEECTTSCEEEE
T ss_pred             CCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC-----EEEEEcCCCCcceEEEcCCC------CeEEEecCCceEEEEE
Confidence            4699999999998 666655 889999998865     45555567889999999999      9999976543 55665


Q ss_pred             CC---c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC---
Q 016199          161 GN---S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD---  233 (393)
Q Consensus       161 ~~---g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~---  233 (393)
                      ..   + ...+.....   ...+++++++++|++|+++                 ...+.++++++.++........   
T Consensus        96 ~~~~~~~~~~~~~~~~---~~~~n~i~~~~~g~~~v~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~  155 (302)
T d2p4oa1          96 LVKSDGTVETLLTLPD---AIFLNGITPLSDTQYLTAD-----------------SYRGAIWLIDVVQPSGSIWLEHPML  155 (302)
T ss_dssp             EECTTSCEEEEEECTT---CSCEEEEEESSSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECGGG
T ss_pred             ecccccceeeccccCC---ccccceeEEccCCCEEeec-----------------cccccceeeeccCCcceeEecCCcc
Confidence            42   3 333333222   3457899999999999997                 4457899999988776654321   


Q ss_pred             --------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC-CcceeeeeccCCCCCCeEEECCCCCEEEEEecCcch
Q 016199          234 --------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFST  304 (393)
Q Consensus       234 --------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~  304 (393)
                              ...+||+..  +++.+|++++..++|++++.++.. ......+. . ...|+++++|++|++|++....   
T Consensus       156 ~~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~pdgia~d~dG~l~va~~~~---  228 (302)
T d2p4oa1         156 ARSNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-E-QTNIDDFAFDVEGNLYGATHIY---  228 (302)
T ss_dssp             SCSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-E-SCCCSSEEEBTTCCEEEECBTT---
T ss_pred             ceeeccCcccccccccc--cCCceeeecCCCCeEEecccccccccccccccc-C-CCCCcceEECCCCCEEEEEcCC---
Confidence                    344677765  456899999999999999987543 22233333 2 3469999999999999998754   


Q ss_pred             hhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEEEEE-----eCCEEEEEecC
Q 016199          305 YWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIK-----IGDHLYCGSVH  375 (393)
Q Consensus       305 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~-----~~g~Lyigs~~  375 (393)
                                                     +.|.+++++|+......... ....+.+.-     +++.||+++..
T Consensus       229 -------------------------------~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         229 -------------------------------NSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -------------------------------CCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -------------------------------CcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence                                           56999999999776655332 333333222     34689998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=2.3e-19  Score=163.27  Aligned_cols=235  Identities=16%  Similarity=0.209  Sum_probs=168.4

Q ss_pred             CCCceEEEecCCCEEEEEe-c-CCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGC-E-DGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~-~-~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      .+|+++++|++|+ +|+.. . .+++.+++..+..    ..... .....|.+++++++|      +||+++...++.++
T Consensus        14 ~~P~~vavd~dG~-i~v~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~gvav~~~g------~i~v~d~~~~~i~~   82 (260)
T d1rwia_          14 LSPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTG----TTVLPFNGLYQPQGLAVDGAG------TVYVTDFNNRVVTL   82 (260)
T ss_dssp             CCEEEEEECTTCC-EEEEECSSSCEEEEEC----C----EEECCCCSCCSCCCEEECTTC------CEEEEETTTEEEEE
T ss_pred             CCCCEEEEcCCCC-EEEEEcCCCCEEEEEcCCCce----EEEeccCCccCceEEEEcCCC------CEEEeeeeeceeee
Confidence            6899999999998 66654 3 5688888766543    22221 123579999999999      99999988888877


Q ss_pred             eCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccCC
Q 016199          160 SGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYFA  237 (393)
Q Consensus       160 d~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~~  237 (393)
                      ..++ ...+. ...  .+..|++|+++++|++|++|                 ..+.++++++..+...... ..++..|
T Consensus        83 ~~~~~~~~~~-~~~--~~~~p~~iavd~~g~i~v~d-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~p  142 (260)
T d1rwia_          83 AAGSNNQTVL-PFD--GLNYPEGLAVDTQGAVYVAD-----------------RGNNRVVKLAAGSKTQTVLPFTGLNDP  142 (260)
T ss_dssp             CTTCSCCEEC-CCC--SCCSEEEEEECTTCCEEEEE-----------------GGGTEEEEECTTCSSCEECCCCSCCSC
T ss_pred             eeeccceeee-eee--eeeecccccccccceeEeec-----------------cccccccccccccceeeeeeecccCCc
Confidence            6655 22221 122  23567899999999999997                 3345789998876655443 3457889


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhh
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRK  317 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~  317 (393)
                      ++|+++++|+ +|+++...++|.+|+.++..   ...+.....+.|.++++|++|++||+....                
T Consensus       143 ~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~----------------  202 (260)
T d1rwia_         143 DGVAVDNSGN-VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNT----------------  202 (260)
T ss_dssp             CEEEECTTCC-EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTT----------------
T ss_pred             ceeeecCCCC-Eeeeccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecCC----------------
Confidence            9999999985 89999999999999976532   222222223469999999999999998754                


Q ss_pred             hhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEE-EEeCCEEEEEecCCCeEEEEeCCC
Q 016199          318 VSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSA-IKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~-~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                                        +.|++++++++....+....+...+.+ ...+|+||++...++.|.+|+..+
T Consensus       203 ------------------~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         203 ------------------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             ------------------TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             ------------------CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence                              469999998887666543333333333 344689999999999999998643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=5.1e-17  Score=149.08  Aligned_cols=243  Identities=16%  Similarity=0.180  Sum_probs=170.5

Q ss_pred             CccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC------CCceeeeEECCC-CCCCCceEEEEEe
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT------GGRPLGIAFANS-DPDADRITMIVAD  151 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~------~~~p~gl~~d~~-G~~~~~~~L~v~~  151 (393)
                      |++..|.+|+++++|+ ||++.. +++|.+|++++..    ...+...      ...|.+++++.+ +      ..+++.
T Consensus        20 g~f~~P~gvavd~dg~-i~VaD~~n~rI~v~d~~G~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~------~~~~~~   88 (279)
T d1q7fa_          20 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNSG------DIIVTE   88 (279)
T ss_dssp             TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTTT------EEEEEE
T ss_pred             CeECCccEEEEcCCCC-EEEEECCCCEEEEEeCCCCE----EEEecccCCCccccccccccccccccc------ccceec
Confidence            5678999999999997 777764 7799999987653    3334221      125788886544 5      555543


Q ss_pred             C-C-CceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          152 A-Y-KGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       152 ~-~-~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                      . . ..|..++.+|....  ......+..+.+++++++|++|+++.                 ..++++++++.++.+..
T Consensus        89 ~~~~~~i~~~~~~g~~~~--~~~~~~~~~p~~~avd~~G~i~v~~~-----------------~~~~~~~~~~~g~~~~~  149 (279)
T d1q7fa_          89 RSPTHQIQIYNQYGQFVR--KFGATILQHPRGVTVDNKGRIIVVEC-----------------KVMRVIIFDQNGNVLHK  149 (279)
T ss_dssp             CGGGCEEEEECTTSCEEE--EECTTTCSCEEEEEECTTSCEEEEET-----------------TTTEEEEECTTSCEEEE
T ss_pred             cCCcccccccccccccee--ecCCCcccccceeccccCCcEEEEee-----------------ccceeeEeccCCceeec
Confidence            3 2 34777788872111  11222345678999999999999973                 34679999998665555


Q ss_pred             Ee--cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCCCeEEECCCCCEEEEEecCcchhh
Q 016199          230 LV--SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLPGLPDNIRYDGEGHYLIALATEFSTYW  306 (393)
Q Consensus       230 ~~--~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~g~P~~i~~d~~G~lwva~~~~r~~~~  306 (393)
                      +.  ..+..+.+++++++| .+|+++...++|.+|+.+|+.   ...+. ......|.+|++|++|++||+....+    
T Consensus       150 ~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~---~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~----  221 (279)
T d1q7fa_         150 FGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHNN----  221 (279)
T ss_dssp             EECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSSS----
T ss_pred             ccccccccccceeeeccce-eEEeeeccccceeeeecCCce---eeeecccccccCCcccccccCCeEEEEECCCC----
Confidence            42  346778999999988 799999999999999987642   22222 12234699999999999999976431    


Q ss_pred             hhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCcc-EEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          307 DLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLI-SSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       307 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~-~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                                   ..|.+|+++|+.+..+..+. .... ..+...+|+||+++ .+..|.+|+-
T Consensus       222 -----------------------------~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~-~n~~v~~fr~  271 (279)
T d1q7fa_         222 -----------------------------FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS-KDYRLYIYRY  271 (279)
T ss_dssp             -----------------------------CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEEEEEEC
T ss_pred             -----------------------------cEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEe-CCCeEEEEEe
Confidence                                         34888999999988876543 2222 33455679999998 5788999987


Q ss_pred             CCCCCC
Q 016199          385 NQHPAR  390 (393)
Q Consensus       385 ~~~~~~  390 (393)
                      ....|+
T Consensus       272 ~~~~~~  277 (279)
T d1q7fa_         272 VQLAPV  277 (279)
T ss_dssp             SCCCCT
T ss_pred             eeecCC
Confidence            766654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=1.9e-16  Score=143.72  Aligned_cols=187  Identities=18%  Similarity=0.223  Sum_probs=134.7

Q ss_pred             CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCCC-ceE
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAYK-GLL  157 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~  157 (393)
                      +....|++++++++|+ ||++...+.++++...+..    ...+. .....|.+|+++++|      ++|+++... .+.
T Consensus        54 ~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~----~~~~~~~~~~~p~~iavd~~g------~i~v~d~~~~~~~  122 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNN----QTVLPFDGLNYPEGLAVDTQG------AVYVADRGNNRVV  122 (260)
T ss_dssp             CSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSC----CEECCCCSCCSEEEEEECTTC------CEEEEEGGGTEEE
T ss_pred             CCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccc----eeeeeeeeeeecccccccccc------eeEeecccccccc
Confidence            3457899999999997 8888877777666544332    22221 123579999999999      999998643 477


Q ss_pred             EEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCcc
Q 016199          158 KISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLY  235 (393)
Q Consensus       158 ~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~  235 (393)
                      +++..+ ..... ...  .+..+.+|+++++|++|+++                 ...++|+++++++.....+. ..+.
T Consensus       123 ~~~~~~~~~~~~-~~~--~~~~p~~i~~~~~g~~~v~~-----------------~~~~~i~~~d~~~~~~~~~~~~~~~  182 (260)
T d1rwia_         123 KLAAGSKTQTVL-PFT--GLNDPDGVAVDNSGNVYVTD-----------------TDNNRVVKLEAESNNQVVLPFTDIT  182 (260)
T ss_dssp             EECTTCSSCEEC-CCC--SCCSCCEEEECTTCCEEEEE-----------------GGGTEEEEECTTTCCEEECCCSSCC
T ss_pred             ccccccceeeee-eec--ccCCcceeeecCCCCEeeec-----------------cccccccccccccceeeeeeccccC
Confidence            777766 22221 111  24567899999999999997                 33468999999876555543 5678


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      .|+|++++++| .|||++..+++|++|+.++..   ...+....-..|.+|++|++|++||+....
T Consensus       183 ~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         183 APWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             SEEEEEECTTC-CEEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             CCccceeeeee-eeeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            89999999998 599999999999999875432   222221222369999999999999997754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=4.2e-13  Score=121.67  Aligned_cols=203  Identities=19%  Similarity=0.235  Sum_probs=150.6

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECC-CCCCCCceEEEEEeCCC-ceEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFAN-SDPDADRITMIVADAYK-GLLK  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~-~G~~~~~~~L~v~~~~~-gl~~  158 (393)
                      ..+.+|++|..++.||+.+. .+.|++.+.++..    .+.+... ...|.+|++|. .+      +||+++... .|.+
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~----~~~v~~~~~~~p~~iAvD~~~~------~lY~~d~~~~~I~~  105 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PTTIIRQDLGSPEGIALDHLGR------TIFWTDSQLDRIEV  105 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CEEEECTTCCCEEEEEEETTTT------EEEEEETTTTEEEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC----cEEEEEeccccccEEEEeccCC------eEEEeccCCCEEEE
Confidence            34566889988788888765 6789999998765    5554432 35799999996 56      899998754 5888


Q ss_pred             EeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCc
Q 016199          159 ISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDL  234 (393)
Q Consensus       159 id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l  234 (393)
                      ++++|  .+.+...    .+..|.++++|| .|.+|+++.+               ....+|++.++++...+.+ ..++
T Consensus       106 ~~~dg~~~~~l~~~----~l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG~~~~~i~~~~~  166 (263)
T d1npea_         106 AKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNL  166 (263)
T ss_dssp             EETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTC
T ss_pred             EecCCceEEEEecc----cccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCCCCceeeeeecc
Confidence            88888  3344321    134577999998 5689999743               2245799999986654544 4578


Q ss_pred             cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcc
Q 016199          235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPF  314 (393)
Q Consensus       235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~  314 (393)
                      ..|+|+++++.++.|||++...++|.+++++|.   ..+.+..+++ .|.+|+++ ++++|++....             
T Consensus       167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~-------------  228 (263)
T d1npea_         167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKT-------------  228 (263)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCC-SEEEEEEE-TTEEEEEETTT-------------
T ss_pred             cccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECCCC-CcEEEEEE-CCEEEEEECCC-------------
Confidence            899999999998899999999999999999764   2344454554 68899998 57899988754             


Q ss_pred             hhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeC
Q 016199          315 IRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYD  353 (393)
Q Consensus       315 ~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d  353 (393)
                                           +.|.++|+. |+.+..+..
T Consensus       229 ---------------------~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         229 ---------------------NSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             ---------------------TEEEEEETTTTEEEEEECC
T ss_pred             ---------------------CEEEEEECCCCccceEECC
Confidence                                 569999985 676666653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.59  E-value=3.1e-14  Score=132.67  Aligned_cols=181  Identities=13%  Similarity=0.152  Sum_probs=129.0

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-C----CCceeeeEECCCCCCCCceEEEEEeCC-----
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-T----GGRPLGIAFANSDPDADRITMIVADAY-----  153 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~----~~~p~gl~~d~~G~~~~~~~L~v~~~~-----  153 (393)
                      .|.+++++++|++||++....+|.+++++++.    ...... .    ...|+.+++|++|      +||+++..     
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~----~~~~~~~~~g~~~~~pndl~~d~~G------~lyvtd~~~~~~~  141 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTF----EEIAKKDSEGRRMQGCNDCAFDYEG------NLWITAPAGEVAP  141 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCE----EECCSBCTTSCBCBCCCEEEECTTS------CEEEEECBCBCTT
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcE----EEEEeccccccccCCCcEEEECCCC------CEEEecCccCccc
Confidence            48899999999989999888889999988753    222211 1    1248899999999      99999753     


Q ss_pred             -----------CceEEEeCCc-eEEEeeccCCccccccccEEEcCCC-----cEEEEeCCCccchhhheehhcccCCCcE
Q 016199          154 -----------KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDG-----MIYFTDASNKYYLREYILDIFEGKPNGR  216 (393)
Q Consensus       154 -----------~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-----~l~~td~~~~~~~~~~~~~~~e~~~~g~  216 (393)
                                 +.|++++++| ...+..     .+..+|++++++++     .||++|                 +.+++
T Consensus       142 ~~~~~~~~~~~G~v~~~~~dg~~~~~~~-----~~~~pNGi~~~~d~d~~~~~lyv~d-----------------~~~~~  199 (314)
T d1pjxa_         142 ADYTRSMQEKFGSIYCFTTDGQMIQVDT-----AFQFPNGIAVRHMNDGRPYQLIVAE-----------------TPTKK  199 (314)
T ss_dssp             SCCCBTTSSSCEEEEEECTTSCEEEEEE-----EESSEEEEEEEECTTSCEEEEEEEE-----------------TTTTE
T ss_pred             ccccceeccCCceEEEEeecCceeEeeC-----CcceeeeeEECCCCCcceeEEEEEe-----------------ecccc
Confidence                       2488888888 433322     24568899998765     499998                 45678


Q ss_pred             EEEEeCCC-CeEE---EEec----CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCeEE
Q 016199          217 LLSFDPVT-KETK---VLVS----DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIR  287 (393)
Q Consensus       217 l~~~d~~t-~~~~---~~~~----~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~  287 (393)
                      |++||... +.+.   .+..    ....|.|++++.+| .||+++...++|++|+.++..   ....+ ..| ..|.+++
T Consensus       200 i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~---~~~~i-~~p~~~~t~~a  274 (314)
T d1pjxa_         200 LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQ---PKMRI-RCPFEKPSNLH  274 (314)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBS---CSEEE-ECSSSCEEEEE
T ss_pred             eEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCE---EEEEE-ECCCCCEEEEE
Confidence            99987432 3332   1111    23458999999999 599999999999999976432   22222 233 3588999


Q ss_pred             ECCCCC-EEEEEecC
Q 016199          288 YDGEGH-YLIALATE  301 (393)
Q Consensus       288 ~d~~G~-lwva~~~~  301 (393)
                      +.++|+ +||+....
T Consensus       275 fg~d~~~lyVt~~~~  289 (314)
T d1pjxa_         275 FKPQTKTIFVTEHEN  289 (314)
T ss_dssp             ECTTSSEEEEEETTT
T ss_pred             EeCCCCEEEEEECCC
Confidence            999986 99987643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-12  Score=116.60  Aligned_cols=225  Identities=12%  Similarity=0.148  Sum_probs=154.8

Q ss_pred             EEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc------eEEEee
Q 016199           97 IYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS------TVLLTD  169 (393)
Q Consensus        97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g------~~~l~~  169 (393)
                      |+++... .|.+++.++..    ...+......+.+|.+|...     ++||++|...+ |++.+.++      .+.+. 
T Consensus         4 Ll~s~~~-~I~~~~l~~~~----~~~~~~~~~~~~~id~d~~~-----~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-   72 (266)
T d1ijqa1           4 LFFTNRH-EVRKMTLDRSE----YTSLIPNLRNVVALDTEVAS-----NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-   72 (266)
T ss_dssp             EEEECBS-SEEEEETTSCC----CEEEECSCSSEEEEEEETTT-----TEEEEEETTTTEEEEEEC--------CEEEE-
T ss_pred             EEEECCC-eEEEEECCCCc----ceeeeCCCCceEEEEEEeCC-----CEEEEEECCCCEEEEEEecCCCCCcceEEEE-
Confidence            4444433 59999998765    55554445678899998643     28999987544 77777655      11111 


Q ss_pred             ccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCC
Q 016199          170 EAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQT  247 (393)
Q Consensus       170 ~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~  247 (393)
                       .  .....+.+|++|. .++||++|                 ...++|.+++.++...+. +..++..|.++++++...
T Consensus        73 -~--~~~~~p~glAvD~~~~~lY~~d-----------------~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g  132 (266)
T d1ijqa1          73 -S--RDIQAPDGLAVDWIHSNIYWTD-----------------SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  132 (266)
T ss_dssp             -C--SSCSCCCEEEEETTTTEEEEEE-----------------TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             -e--CCCCCcceEEEeeccceEEEEe-----------------cCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccC
Confidence             1  1234577999997 56999998                 345689999988766544 455678899999999877


Q ss_pred             EEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCC-CEEEEEecCcchhhhhhhcCcchhhhhhhhhhh
Q 016199          248 HLVYCETSM-RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG-HYLIALATEFSTYWDLAYRYPFIRKVSGMVVRY  325 (393)
Q Consensus       248 ~l~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G-~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~  325 (393)
                      .+||++... .+|.|.+++|..   .+.+....-..|.++++|..+ ++|++....                        
T Consensus       133 ~ly~~~~~~~~~I~r~~~dGs~---~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~------------------------  185 (266)
T d1ijqa1         133 FMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL------------------------  185 (266)
T ss_dssp             EEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTT------------------------
T ss_pred             eEEEeccCCCcceeEeccCCCc---eecccccccceeeEEEeeccccEEEEecCCc------------------------
Confidence            999999754 589999998752   333443323479999999764 577765432                        


Q ss_pred             hCCCCCCCCCceEEEECCCCcEEEEee-CCC-CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCC
Q 016199          326 LGMPPMGKSSSGVFIVDLDGKPIAHYY-DPE-MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA  389 (393)
Q Consensus       326 ~~~~~~~~~~~~v~~~d~~g~~~~~~~-d~~-~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~  389 (393)
                                +.|.+++.+|.-...+. ... ......+..++++||.+......|.++++.....
T Consensus       186 ----------~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         186 ----------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             ----------TEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred             ----------CEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcc
Confidence                      46889999886544433 222 3344455667899999999999999998766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.2e-12  Score=117.04  Aligned_cols=190  Identities=17%  Similarity=0.160  Sum_probs=132.9

Q ss_pred             cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECC-CCCCCCceEEEEEeCCCc-eE
Q 016199           82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFAN-SDPDADRITMIVADAYKG-LL  157 (393)
Q Consensus        82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~g-l~  157 (393)
                      +..|.+|.+|..++.||+... .+.|++.+.++.......+... .....|.+|++|. .+      +||+++...+ |.
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~------~lY~~d~~~~~I~  102 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS------NIYWTDSVLGTVS  102 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT------EEEEEETTTTEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc------eEEEEecCCCEEE
Confidence            567888999988888887764 6789998887533111122222 2235799999996 55      8999987654 78


Q ss_pred             EEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cC
Q 016199          158 KISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SD  233 (393)
Q Consensus       158 ~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~  233 (393)
                      +++.+|  ...+...  +  ...|.+|++|+ .|.||+++.+                ..++|++.++++...+.+. .+
T Consensus       103 v~~~~g~~~~~~~~~--~--~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~  162 (266)
T d1ijqa1         103 VADTKGVKRKTLFRE--N--GSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTEN  162 (266)
T ss_dssp             EEETTSSSEEEEEEC--T--TCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSS
T ss_pred             eEecCCceEEEEEcC--C--CCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccc
Confidence            888888  3333221  1  23467999998 6799999743                2357999999876666654 56


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC--CCCCCeEEECCCCCEEEEEecC
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL--PGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l--~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      +..|+|+++++.++.|||++...++|.+++++|..   .+.+....  ...|-+++++ ++.+|++....
T Consensus       163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~  228 (266)
T d1ijqa1         163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  228 (266)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             cceeeEEEeeccccEEEEecCCcCEEEEEECCCCC---EEEEEeCCCcccccEEEEEE-CCEEEEEECCC
Confidence            78899999999999999999999999999998753   22333222  1357889998 57788887644

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.51  E-value=1.7e-11  Score=110.34  Aligned_cols=245  Identities=16%  Similarity=0.172  Sum_probs=160.2

Q ss_pred             CCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id  160 (393)
                      ..|.+++++|||+.||++. .++.|..|+..++.    ..........|.+++++++|     +.++++....+ +..++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  102 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIATVPAGSSPQGVAVSPDG-----KQVYVTNMASSTLSVID  102 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSEEEEEECTTS-----SEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc----eeeeeecccccccccccccc-----ccccccccccceeeecc
Confidence            4689999999999888765 57899999988764    32222345679999999988     24666655444 45556


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCCcE-EEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMI-YFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG  239 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l-~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng  239 (393)
                      ..+.+.... ...  ...+..+.++++|.. +++.                 .....+..++..+++..........+..
T Consensus       103 ~~~~~~~~~-~~~--~~~~~~~~~~~dg~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (301)
T d1l0qa2         103 TTSNTVAGT-VKT--GKSPLGLALSPDGKKLYVTN-----------------NGDKTVSVINTVTKAVINTVSVGRSPKG  162 (301)
T ss_dssp             TTTTEEEEE-EEC--SSSEEEEEECTTSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred             cccceeeee-ccc--cccceEEEeecCCCeeeeee-----------------ccccceeeeeccccceeeecccCCCceE
Confidence            544111111 111  123457889999954 4443                 2345678888887776665555667889


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      +++++|++.+|++......+..++....   ...... .....|.+++++++|+ +|++.....                
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~----------------  222 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKY----------------  222 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE-ECSSEEEEEEECTTSSEEEEEEECSS----------------
T ss_pred             EEeeccccceeeecccccccccccccce---eeeecc-cccCCcceeeccccccccccccccce----------------
Confidence            9999999999999887777777775432   111112 2334588899999998 445544321                


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCCCC
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARAI  392 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~~~  392 (393)
                                      .+.|..+|. +++.+..+..........+.+++.+||+++..++.|..+|++....+++
T Consensus       223 ----------------~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         223 ----------------FNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             ----------------CCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ----------------eeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence                            145888886 5677777765432111122334568999988888999999877655543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.50  E-value=3.6e-12  Score=118.57  Aligned_cols=195  Identities=13%  Similarity=0.209  Sum_probs=133.6

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCCC-ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhe
Q 016199          129 RPLGIAFANSDPDADRITMIVADAYK-GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYI  205 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~  205 (393)
                      ...|+++|++|      +||++|... .|+++++++  .........    ..+++|++++||++|+++....       
T Consensus        41 ~lEG~~~D~~G------~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~----~~p~gla~~~dG~l~va~~~~~-------  103 (319)
T d2dg1a1          41 QLEGLNFDRQG------QLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGDF-------  103 (319)
T ss_dssp             CEEEEEECTTS------CEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTTS-------
T ss_pred             CcEeCEECCCC------CEEEEECCCCEEEEEECCCCeEEEEEeCCC----CCeeEEEECCCCCEEEEecCCC-------
Confidence            45799999999      999999754 499999987  222221222    2467999999999999964321       


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEEecC---ccCCCcEEEcCCCCEEEEEeCCC------CeEEEEEecCCCCcceeeee
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVLVSD---LYFANGVVLSPDQTHLVYCETSM------RRCRKFYIKGKNAGRVEKFI  276 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~~---l~~~ngi~~s~dg~~l~v~~~~~------~ri~~~~~~g~~~~~~~~~~  276 (393)
                            ...++++.++..++........   ...+|+++++++|+ +|+++...      +.+++++.++.   ..+.+.
T Consensus       104 ------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~---~~~~~~  173 (319)
T d2dg1a1         104 ------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR---TVTPII  173 (319)
T ss_dssp             ------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC---CEEEEE
T ss_pred             ------ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc---eeEEEe
Confidence                  2356799999988877665443   45689999999995 89988643      45888876543   233344


Q ss_pred             ccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEEC--CCCcEEEEee-
Q 016199          277 ETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVD--LDGKPIAHYY-  352 (393)
Q Consensus       277 ~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d--~~g~~~~~~~-  352 (393)
                      +.+. .|+||+++++|+ +|++....                                  +.|.+++  .+|....... 
T Consensus       174 ~~~~-~pnGia~s~dg~~lyvad~~~----------------------------------~~I~~~d~~~~g~~~~~~~~  218 (319)
T d2dg1a1         174 QNIS-VANGIALSTDEKVLWVTETTA----------------------------------NRLHRIALEDDGVTIQPFGA  218 (319)
T ss_dssp             EEES-SEEEEEECTTSSEEEEEEGGG----------------------------------TEEEEEEECTTSSSEEEEEE
T ss_pred             eccc-eeeeeeeccccceEEEecccC----------------------------------CceEEEEEcCCCceeccccc
Confidence            3443 699999999997 89987643                                  3466664  4554432211 


Q ss_pred             -----CCCCCccEE-EEEeCCEEEEEecCCCeEEEEeCC
Q 016199          353 -----DPEMSLISS-AIKIGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       353 -----d~~~~~~~~-~~~~~g~Lyigs~~~~~i~~~~~~  385 (393)
                           ......... ....+|+||++...+..|.+++.+
T Consensus       219 ~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         219 TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence                 111222222 344569999999999999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.8e-11  Score=110.71  Aligned_cols=228  Identities=14%  Similarity=0.183  Sum_probs=153.3

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcce--eeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc--eEEEeec
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSL--VHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS--TVLLTDE  170 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~--~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g--~~~l~~~  170 (393)
                      .|+++. .+.|.++..++......  ..........+.+|++|...     ++||++|...+ |.+++.+|  .+.+...
T Consensus         3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~-----~~iywsd~~~~~I~~~~l~g~~~~~v~~~   76 (263)
T d1npea_           3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-----KVVYWTDISEPSIGRASLHGGEPTTIIRQ   76 (263)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-----TEEEEEETTTTEEEEEESSSCCCEEEECT
T ss_pred             EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCC-----CEEEEEECCCCeEEEEEcccCCcEEEEEe
Confidence            444443 34799999876541100  01111112346789998643     28999987655 88888877  3443321


Q ss_pred             cCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcEEEcCCCCE
Q 016199          171 AEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVVLSPDQTH  248 (393)
Q Consensus       171 ~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi~~s~dg~~  248 (393)
                        +  ...|.+|++|. .++||+++                 ...++|.+.++++...+.+. .++..|.+++++|....
T Consensus        77 --~--~~~p~~iAvD~~~~~lY~~d-----------------~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~  135 (263)
T d1npea_          77 --D--LGSPEGIALDHLGRTIFWTD-----------------SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGN  135 (263)
T ss_dssp             --T--CCCEEEEEEETTTTEEEEEE-----------------TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTE
T ss_pred             --c--cccccEEEEeccCCeEEEec-----------------cCCCEEEEEecCCceEEEEecccccCCcEEEEecccCc
Confidence              1  23477999996 66999998                 34568999998876655554 45788999999998889


Q ss_pred             EEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCC-CEEEEEecCcchhhhhhhcCcchhhhhhhhhhh
Q 016199          249 LVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG-HYLIALATEFSTYWDLAYRYPFIRKVSGMVVRY  325 (393)
Q Consensus       249 l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G-~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~  325 (393)
                      +||++.+.  .+|++.+++|..   .+.+....-..|.++++|..+ ++|++....                        
T Consensus       136 ly~t~~~~~~~~I~r~~~dG~~---~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~------------------------  188 (263)
T d1npea_         136 LYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGT------------------------  188 (263)
T ss_dssp             EEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETTT------------------------
T ss_pred             EEEeecCCCCcEEEEecCCCCC---ceeeeeecccccceEEEeecCcEEEEEeCCC------------------------
Confidence            99998764  469999998653   223332222479999999765 477765432                        


Q ss_pred             hCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          326 LGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       326 ~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                                +.|.+++.+|.-.+.+-... .....+..++++||.+....+.|.++++...+
T Consensus       189 ----------~~I~~~~~~g~~~~~v~~~~-~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         189 ----------HRAECLNPAQPGRRKVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             ----------TEEEEEETTEEEEEEEEECC-CSEEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred             ----------CEEEEEECCCCCeEEEECCC-CCcEEEEEECCEEEEEECCCCEEEEEECCCCc
Confidence                      46899999987665544332 22334556789999999999999999986443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=2.7e-12  Score=116.93  Aligned_cols=186  Identities=13%  Similarity=0.124  Sum_probs=130.8

Q ss_pred             CccCCCceEEEecCCCEEEEEe--cCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCc-
Q 016199           80 GVLKGPEDLLYDAHSKLIYTGC--EDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKG-  155 (393)
Q Consensus        80 g~~~~Pe~ia~d~~g~~L~~~~--~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-  155 (393)
                      +....|.+++++++....++..  .++.|.+++.++..    ...+.. ....|.+++++++|      ++|+++...+ 
T Consensus        67 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~~~p~~~avd~~G------~i~v~~~~~~~  136 (279)
T d1q7fa_          67 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF----VRKFGATILQHPRGVTVDNKG------RIIVVECKVMR  136 (279)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCE----EEEECTTTCSCEEEEEECTTS------CEEEEETTTTE
T ss_pred             ccccccccccccccccccceeccCCccccccccccccc----eeecCCCcccccceeccccCC------cEEEEeeccce
Confidence            3456788898877655444433  25578888876553    444422 23569999999999      9999987544 


Q ss_pred             eEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-
Q 016199          156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-  232 (393)
Q Consensus       156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-  232 (393)
                      +..++++|  ...+..   ...+..+.+++++++|++|+++                 ...++|++||+++..+..+.. 
T Consensus       137 ~~~~~~~g~~~~~~g~---~~~~~~~~~i~~d~~g~i~v~d-----------------~~~~~V~~~d~~G~~~~~~g~~  196 (279)
T d1q7fa_         137 VIIFDQNGNVLHKFGC---SKHLEFPNGVVVNDKQEIFISD-----------------NRAHCVKVFNYEGQYLRQIGGE  196 (279)
T ss_dssp             EEEECTTSCEEEEEEC---TTTCSSEEEEEECSSSEEEEEE-----------------GGGTEEEEEETTCCEEEEESCT
T ss_pred             eeEeccCCceeecccc---cccccccceeeeccceeEEeee-----------------ccccceeeeecCCceeeeeccc
Confidence            88889888  222211   1234567899999999999997                 334689999998666655532 


Q ss_pred             -CccCCCcEEEcCCCCEEEEEeCCC-CeEEEEEecCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEe
Q 016199          233 -DLYFANGVVLSPDQTHLVYCETSM-RRCRKFYIKGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       233 -~l~~~ngi~~s~dg~~l~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~  299 (393)
                       .+..|.||+++++|+ +||++... .+|.+|+.+|+-   ...+... ....|.+++++++|+++|+..
T Consensus       197 g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~~---~~~~~~~~~~~~p~~vav~~dG~l~V~~~  262 (279)
T d1q7fa_         197 GITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVLASK  262 (279)
T ss_dssp             TTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred             ccccCCcccccccCCe-EEEEECCCCcEEEEECCCCCE---EEEEeCCCCCCCEeEEEEeCCCcEEEEeC
Confidence             367899999999995 99999764 479999866531   1223222 224689999999999999764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.33  E-value=4.7e-11  Score=109.71  Aligned_cols=158  Identities=16%  Similarity=0.252  Sum_probs=116.5

Q ss_pred             cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC
Q 016199          177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM  256 (393)
Q Consensus       177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~  256 (393)
                      .++.++++++||+||+++                 ...++|+++++++ +.+.+......|+++++++||+ +|+++...
T Consensus        28 ~~~e~iAv~pdG~l~vt~-----------------~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTN-----------------HEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CCEEEEEECTTSCEEEEE-----------------TTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEe-----------------CCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            367899999999999998                 4457899999974 5566666567799999999995 89999888


Q ss_pred             CeEEEEEecCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCC
Q 016199          257 RRCRKFYIKGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSS  335 (393)
Q Consensus       257 ~ri~~~~~~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  335 (393)
                      +.+.+++..+. .+....+.+. ....|++++++++|++|++....                                  
T Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~----------------------------------  133 (302)
T d2p4oa1          89 DSIPVVSLVKS-DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYR----------------------------------  133 (302)
T ss_dssp             TSCEEEEEECT-TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTT----------------------------------
T ss_pred             ceEEEEEeccc-ccceeeccccCCccccceeEEccCCCEEeecccc----------------------------------
Confidence            89998887643 2333333322 22468899999999999987643                                  


Q ss_pred             ceEEEECCCCcEEEEe-eCCC---------CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          336 SGVFIVDLDGKPIAHY-YDPE---------MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       336 ~~v~~~d~~g~~~~~~-~d~~---------~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                      +.++++++++...... .++.         ......+..++++||++......|.+++.+...
T Consensus       134 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~  196 (302)
T d2p4oa1         134 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTD  196 (302)
T ss_dssp             TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTS
T ss_pred             ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccc
Confidence            5688888876654432 2211         223334556789999999999999999976543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.29  E-value=7.4e-10  Score=104.51  Aligned_cols=251  Identities=12%  Similarity=0.034  Sum_probs=141.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-C-c-eEEE
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-K-G-LLKI  159 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~-g-l~~i  159 (393)
                      ..|..|+++++++.||+... +.+..|..+...... .......+..|..++++++|     +.+|+..+. . + +..+
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~p~~v~~~~~~-----~~~~v~~a~~~~~~v~~~  112 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIV-HEASHPIGGHPRANDADTNT-----RAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEE-EEEEEECCSSGGGGCTTSCC-----EEEEEEECSSTTCCEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeE-EEeeecCCCCcEEEEECCCC-----CEEEEEEecCCCCEEEEe
Confidence            45677999999999998765 445555443221111 11112346679999999998     246776542 1 1 2222


Q ss_pred             --eCCc--eEEE-----------eeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeC-
Q 016199          160 --SGNS--TVLL-----------TDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDP-  222 (393)
Q Consensus       160 --d~~g--~~~l-----------~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~-  222 (393)
                        ..++  ....           ....+.....++++++++|||+ +|++|.+                 ...|++|+. 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~  175 (365)
T d1jofa_         113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKL  175 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEEC
T ss_pred             EccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------CCEEEEEEcc
Confidence              2222  1111           1111111234688999999995 8888733                 345666642 


Q ss_pred             CCCeEEEEe-----cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee-----e-ccCC----------C
Q 016199          223 VTKETKVLV-----SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF-----I-ETLP----------G  281 (393)
Q Consensus       223 ~t~~~~~~~-----~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~-----~-~~l~----------g  281 (393)
                      .++......     .....|.+++++||++.+|++....+.|..|++++.+.......     . ...+          .
T Consensus       176 ~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (365)
T d1jofa_         176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY  255 (365)
T ss_dssp             TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred             CCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccC
Confidence            234333221     12356888999999999999999999999999875432211111     0 0000          1


Q ss_pred             CCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCc--eEEEECCCCcEEEEe---eCCC-
Q 016199          282 LPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSS--GVFIVDLDGKPIAHY---YDPE-  355 (393)
Q Consensus       282 ~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~v~~~d~~g~~~~~~---~d~~-  355 (393)
                      .+..++++++|++..+.....+.                            ....  ..++++.+|.+....   +.+. 
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~----------------------------~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  307 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKF----------------------------ELQGYIAGFKLRDCGSIEKQLFLSPTPTS  307 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESST----------------------------TSCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred             CccceEECCCCCEEEEEcccCCC----------------------------ccceEEEEEEecCCCceeeEeEeeEEEcC
Confidence            24468899999954443322110                            0001  256667777654332   2221 


Q ss_pred             -CCccEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 016199          356 -MSLISSAIK--IGDHLYCGSVHHRGILHLDVN  385 (393)
Q Consensus       356 -~~~~~~~~~--~~g~Lyigs~~~~~i~~~~~~  385 (393)
                       .....+...  ++.+||+++-.++.|..++++
T Consensus       308 G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence             111122232  456799999888988888754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2e-09  Score=97.93  Aligned_cols=255  Identities=13%  Similarity=0.115  Sum_probs=146.2

Q ss_pred             ccCceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEE
Q 016199           71 LQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIV  149 (393)
Q Consensus        71 l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v  149 (393)
                      |...+.+..+  ..|.+|+++|||+.||++.. ++.|..|+.+.................|.++++++||     +.|++
T Consensus        27 l~~~~~~~~~--~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg-----~~l~v   99 (333)
T d1ri6a_          27 LTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG-----QFVFV   99 (333)
T ss_dssp             EEEEEEEECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTS-----SEEEE
T ss_pred             eEEEEEEcCC--CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCC-----CEEee
Confidence            3333444443  56889999999999998886 7888888876543211122222345679999999999     35888


Q ss_pred             EeCCCc-eEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC
Q 016199          150 ADAYKG-LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK  225 (393)
Q Consensus       150 ~~~~~g-l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~  225 (393)
                      ++...+ +..++.+.  ..........  ...++++.++++|+ ++.++.                 ....+..|+..+.
T Consensus       100 ~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~v~~s~d~~~~~~~~~-----------------~~~~i~~~~~~~~  160 (333)
T d1ri6a_         100 GSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPAL-----------------KQDRICLFTVSDD  160 (333)
T ss_dssp             EETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEG-----------------GGTEEEEEEECTT
T ss_pred             cccCCCceeeeccccccceecccccCC--CccceEEEeeecceeeecccc-----------------ccceeeEEEeccC
Confidence            876554 44444332  1111111111  23467899999995 555542                 2234666654432


Q ss_pred             e--EEEE-----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCc--ceeeeeccCC------CCCCeEEECC
Q 016199          226 E--TKVL-----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAG--RVEKFIETLP------GLPDNIRYDG  290 (393)
Q Consensus       226 ~--~~~~-----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~--~~~~~~~~l~------g~P~~i~~d~  290 (393)
                      .  ....     ......|..+++++++..+|++....+....+........  ...... ..+      ..|..+++++
T Consensus       161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~  239 (333)
T d1ri6a_         161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD-MMPENFSDTRWAADIHITP  239 (333)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE-CSCTTCCSCCCEEEEEECT
T ss_pred             CcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee-eeecCCCccccceeEEEec
Confidence            2  1111     1123557889999999999999888888777776432211  111111 111      2345678899


Q ss_pred             CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEee---CCC-CCccEEEEEeC
Q 016199          291 EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYY---DPE-MSLISSAIKIG  366 (393)
Q Consensus       291 ~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~---d~~-~~~~~~~~~~~  366 (393)
                      +|++.+......+                               ...++.++.+++......   ... ...+ .+.+++
T Consensus       240 d~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-a~spDG  287 (333)
T d1ri6a_         240 DGRHLYACDRTAS-------------------------------LITVFSVSEDGSVLSKEGFQPTETQPRGF-NVDHSG  287 (333)
T ss_dssp             TSSEEEEEETTTT-------------------------------EEEEEEECTTSCCEEEEEEEECSSSCCCE-EECTTS
T ss_pred             ccCceeeecccCC-------------------------------eEEEEEEcCCCCEEEEEEEeCCCCCeeEE-EEeCCC
Confidence            9985544432211                               023666777665544332   111 2222 234456


Q ss_pred             CEEEEEecCCCeEEEEeC
Q 016199          367 DHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       367 g~Lyigs~~~~~i~~~~~  384 (393)
                      .+||+++..++.|.++++
T Consensus       288 k~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         288 KYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             SEEEEECTTTCEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEE
Confidence            679999877787777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.24  E-value=1.4e-10  Score=106.48  Aligned_cols=178  Identities=13%  Similarity=0.140  Sum_probs=123.0

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-----CCceeeeEECCCCCCCCceEEEEEeCC----
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-----GGRPLGIAFANSDPDADRITMIVADAY----  153 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-----~~~p~gl~~d~~G~~~~~~~L~v~~~~----  153 (393)
                      ..|.+++.+++|+ ||+++.+ +|+++++++++    .+.+...     ..+++.+.+|++|      ++|+++..    
T Consensus        59 ~~~~~i~~~~dg~-l~va~~~-gl~~~d~~tg~----~~~l~~~~~~~~~~~~nd~~vd~~G------~iw~~~~~~~~~  126 (295)
T d2ghsa1          59 FMGSALAKISDSK-QLIASDD-GLFLRDTATGV----LTLHAELESDLPGNRSNDGRMHPSG------ALWIGTMGRKAE  126 (295)
T ss_dssp             SCEEEEEEEETTE-EEEEETT-EEEEEETTTCC----EEEEECSSTTCTTEEEEEEEECTTS------CEEEEEEETTCC
T ss_pred             CCcEEEEEecCCC-EEEEEeC-ccEEeecccce----eeEEeeeecCCCcccceeeEECCCC------CEEEEecccccc
Confidence            4567899999985 8888765 69999998876    6555432     2368999999999      99999742    


Q ss_pred             ---CceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-----
Q 016199          154 ---KGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-----  224 (393)
Q Consensus       154 ---~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-----  224 (393)
                         ..+++++....+.+..     .+..+|++++++++ .+|++|                 +..++|++|+.+.     
T Consensus       127 ~~~g~l~~~~~g~~~~~~~-----~~~~~Ng~~~s~d~~~l~~~d-----------------t~~~~I~~~~~d~~~~~~  184 (295)
T d2ghsa1         127 TGAGSIYHVAKGKVTKLFA-----DISIPNSICFSPDGTTGYFVD-----------------TKVNRLMRVPLDARTGLP  184 (295)
T ss_dssp             TTCEEEEEEETTEEEEEEE-----EESSEEEEEECTTSCEEEEEE-----------------TTTCEEEEEEBCTTTCCB
T ss_pred             ccceeEeeecCCcEEEEee-----ccCCcceeeecCCCceEEEee-----------------cccceeeEeeeccccccc
Confidence               2256665322333322     24567899999988 599998                 5567898886532     


Q ss_pred             -CeEEEEe---cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCeEEEC-CCCC-EEEE
Q 016199          225 -KETKVLV---SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYD-GEGH-YLIA  297 (393)
Q Consensus       225 -~~~~~~~---~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d-~~G~-lwva  297 (393)
                       ++...+.   .....|.|++++.+| .||++....++|.+|+.+|+..   ..+  .+| ..|.++++. +|++ |||+
T Consensus       185 ~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~G~~~---~~i--~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         185 TGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHI---ARY--EVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             SSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEE---EEE--ECSCSBEEEEEEESTTSCEEEEE
T ss_pred             ccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCCCcEe---eEe--cCCCCceEEEEEeCCCCCEEEEE
Confidence             1222222   224568999999999 6999998899999999876532   222  244 357888885 4544 8887


Q ss_pred             Eec
Q 016199          298 LAT  300 (393)
Q Consensus       298 ~~~  300 (393)
                      +..
T Consensus       259 ta~  261 (295)
T d2ghsa1         259 SAR  261 (295)
T ss_dssp             EBC
T ss_pred             ECC
Confidence            653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.19  E-value=9.5e-09  Score=91.74  Aligned_cols=171  Identities=20%  Similarity=0.259  Sum_probs=116.3

Q ss_pred             EEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCCceEEEeeccCC
Q 016199           96 LIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKISGNSTVLLTDEAEG  173 (393)
Q Consensus        96 ~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g~~~l~~~~~g  173 (393)
                      .+|+.. .++.|..||.++++    +......+..|.+++++++|     +.||++... +.|..+|..+.+.+.. ...
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~----~~~~i~~g~~p~~va~spdG-----~~l~v~~~~~~~i~v~d~~t~~~~~~-~~~   72 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNK----VTATIPVGSNPMGAVISPDG-----TKVYVANAHSNDVSIIDTATNNVIAT-VPA   72 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTE----EEEEEECSSSEEEEEECTTS-----SEEEEEEGGGTEEEEEETTTTEEEEE-EEC
T ss_pred             EEEEEECCCCEEEEEECCCCe----EEEEEECCCCceEEEEeCCC-----CEEEEEECCCCEEEEEECCCCceeee-eec
Confidence            577765 57889999998775    44444556789999999999     257888754 4588889765222211 111


Q ss_pred             ccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEE
Q 016199          174 QKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       174 ~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~  252 (393)
                        ...+++++++++|. ++++.                 .....+..++..+++..........+..+++++|++.++++
T Consensus        73 --~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          73 --GSSPQGVAVSPDGKQVYVTN-----------------MASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVT  133 (301)
T ss_dssp             --SSSEEEEEECTTSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred             --cccccccccccccccccccc-----------------cccceeeecccccceeeeeccccccceEEEeecCCCeeeee
Confidence              12367899999985 55554                 23456888898888766655566678889999999999999


Q ss_pred             eCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEe
Q 016199          253 ETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALA  299 (393)
Q Consensus       253 ~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~  299 (393)
                      ......+..++....   ...... .....|..++.+++++ +|++..
T Consensus       134 ~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         134 NNGDKTVSVINTVTK---AVINTV-SVGRSPKGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             ETTTTEEEEEETTTT---EEEEEE-ECCSSEEEEEECTTSSEEEEEET
T ss_pred             eccccceeeeecccc---ceeeec-ccCCCceEEEeeccccceeeecc
Confidence            888888888886432   222122 1223477888999887 555544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=2.9e-08  Score=89.71  Aligned_cols=152  Identities=11%  Similarity=0.021  Sum_probs=96.6

Q ss_pred             EEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCCc-e--EEEee
Q 016199           96 LIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKISGNS-T--VLLTD  169 (393)
Q Consensus        96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g-~--~~l~~  169 (393)
                      .+++++.+++|..||.++.+   .+..+.  ..+..|.++++++||     +.+|++... +.|..+|.+. .  ..+..
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~---~~~~i~~~~~~~~~~~i~~spDg-----~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMA---VDKVITIADAGPTPMVPMVAPGG-----RIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTE---EEEEEECTTCTTCCCCEEECTTS-----SEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCe---EEEEEECCCCCCCccEEEECCCC-----CEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            57888889999999998754   122232  234568999999999     257787654 4488888765 2  22211


Q ss_pred             ccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCE
Q 016199          170 EAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTH  248 (393)
Q Consensus       170 ~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~  248 (393)
                      .........+.++++++|| .+|++......      ...........+..+|..+++..........++++++++||+.
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  148 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK  148 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC
T ss_pred             CCCcccccceeeEEEcCCCcEEEEeecCCcc------eeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCE
Confidence            1112223457799999998 56666421110      0001112345788899988876655555567899999999999


Q ss_pred             EEEEeCCCCeEEEEEe
Q 016199          249 LVYCETSMRRCRKFYI  264 (393)
Q Consensus       249 l~v~~~~~~ri~~~~~  264 (393)
                      +|++..   .+..++.
T Consensus       149 l~~~~~---~~~~~d~  161 (337)
T d1pbyb_         149 LYGLGR---DLHVMDP  161 (337)
T ss_dssp             EEEESS---SEEEEET
T ss_pred             EEEEcC---Ccceeee
Confidence            888642   3444554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=8.7e-08  Score=86.69  Aligned_cols=179  Identities=13%  Similarity=0.110  Sum_probs=110.9

Q ss_pred             CEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-ceEEE--eCCc--eEEEe
Q 016199           95 KLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-GLLKI--SGNS--TVLLT  168 (393)
Q Consensus        95 ~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~i--d~~g--~~~l~  168 (393)
                      +.+|+++ .++.|..|+.+........+.+ ...+.|.+|++++||     +.||++.... .|..+  +.++  .+...
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG-----~~L~v~~~~d~~i~~~~i~~~~~~~~~~~   77 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDK-----RYLYVGVRPEFRVLAYRIAPDDGALTFAA   77 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTS-----SEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCC-----CEEEEEECCCCeEEEEEEeCCCCcEEEee
Confidence            3577777 4788999988654311112222 446789999999999     3688887644 45544  4443  22222


Q ss_pred             eccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE---ecCccCCCcEEEcC
Q 016199          169 DEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL---VSDLYFANGVVLSP  244 (393)
Q Consensus       169 ~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~---~~~l~~~ngi~~s~  244 (393)
                      ....+   ..+.++++++||+ ||+++                 ...+.+..++.........   ......++++.+++
T Consensus        78 ~~~~~---~~p~~l~~spDg~~l~v~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  137 (333)
T d1ri6a_          78 ESALP---GSLTHISTDHQGQFVFVGS-----------------YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP  137 (333)
T ss_dssp             EEECS---SCCSEEEECTTSSEEEEEE-----------------TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT
T ss_pred             ecccC---CCceEEEEcCCCCEEeecc-----------------cCCCceeeeccccccceecccccCCCccceEEEeee
Confidence            21111   2366899999995 77764                 2234565555444433322   33455688999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCccee--eeec-cCCCCCCeEEECCCCCEEEEEe
Q 016199          245 DQTHLVYCETSMRRCRKFYIKGKNAGRVE--KFIE-TLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       245 dg~~l~v~~~~~~ri~~~~~~g~~~~~~~--~~~~-~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      |++.+++++.....+..|+..........  .... .....|..+++++++.+.+...
T Consensus       138 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeec
Confidence            99999999998899999998643211111  1111 1223578899999998665544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.99  E-value=3e-08  Score=89.99  Aligned_cols=99  Identities=13%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc-e
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS-T  164 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g-~  164 (393)
                      ++++++++.|++++.++.|..||.++++   .+..+. +....|.++++++||     +.+|++....+ |..+|.+. .
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~---~~~t~~~~~~~~p~~l~~spDG-----~~l~v~~~~~~~v~~~d~~t~~   73 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDT---VYKSCVMPDKFGPGTAMMAPDN-----RTAYVLNNHYGDIYGIDLDTCK   73 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE---EEEEEECSSCCSSCEEEECTTS-----SEEEEEETTTTEEEEEETTTTE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCC---EEEEEEcCCCCCcceEEECCCC-----CEEEEEECCCCcEEEEeCccCe
Confidence            5678899888899999999999998765   123332 234579999999999     35788876544 88889765 2


Q ss_pred             --EEEee-ccCCccccccccEEEcCCC-cEEEEe
Q 016199          165 --VLLTD-EAEGQKFKLTDGVDVADDG-MIYFTD  194 (393)
Q Consensus       165 --~~l~~-~~~g~~~~~~~~l~~d~dG-~l~~td  194 (393)
                        ..+.. .........+.++++++|| .+|+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          74 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             eeeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence              11111 1112223457899999999 577764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.98  E-value=3.3e-08  Score=92.91  Aligned_cols=195  Identities=11%  Similarity=0.056  Sum_probs=108.1

Q ss_pred             CCCceEEEecCCCEEEEEec---CCeEEEEEcCCCCCcce---------eee----ee-cCCCceeeeEECCCCCCCCce
Q 016199           83 KGPEDLLYDAHSKLIYTGCE---DGWIKRVTLNDSPADSL---------VHN----WI-NTGGRPLGIAFANSDPDADRI  145 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~---~g~I~~~~~~~~~~~~~---------~~~----~~-~~~~~p~gl~~d~~G~~~~~~  145 (393)
                      ..|..++++++++.+|+.+.   .+.+..+..........         ...    .. .....|++++++++|     +
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-----~  157 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-----T  157 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-----S
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-----C
Confidence            46888999999987787653   34555443321110000         110    00 123458999999999     3


Q ss_pred             EEEEEeCCC-ceEEE--eCCc-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199          146 TMIVADAYK-GLLKI--SGNS-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSF  220 (393)
Q Consensus       146 ~L~v~~~~~-gl~~i--d~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~  220 (393)
                      .+|+++.+. .|..+  +.++ ...........+...+..++++++|. +|+++               |  ..+.|..|
T Consensus       158 ~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~---------------e--~~~~V~v~  220 (365)
T d1jofa_         158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM---------------E--AGNRICEY  220 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE---------------T--TTTEEEEE
T ss_pred             EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEec---------------c--CCCEEEEE
Confidence            589997654 35554  4455 32222111111224577899999994 77774               2  23455555


Q ss_pred             eCCCC--eEE-EEec-----------------CccCCCcEEEcCCCCEEEEEeCCCC-----eEEEEEecCCCC-cceee
Q 016199          221 DPVTK--ETK-VLVS-----------------DLYFANGVVLSPDQTHLVYCETSMR-----RCRKFYIKGKNA-GRVEK  274 (393)
Q Consensus       221 d~~t~--~~~-~~~~-----------------~l~~~ngi~~s~dg~~l~v~~~~~~-----ri~~~~~~g~~~-~~~~~  274 (393)
                      +.+++  ... ....                 ....+..+.++|||+++|++++...     .|..|.++.... .+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            44332  211 1100                 0123457899999999999987544     388888753211 11111


Q ss_pred             eec--cCCCCCCeEEECC-CCCEEEEEe
Q 016199          275 FIE--TLPGLPDNIRYDG-EGHYLIALA  299 (393)
Q Consensus       275 ~~~--~l~g~P~~i~~d~-~G~lwva~~  299 (393)
                      +..  ...+.|.++++++ +|++.+.+.
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~  328 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEe
Confidence            111  1234799999986 788444443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.96  E-value=1.6e-07  Score=89.97  Aligned_cols=176  Identities=11%  Similarity=0.008  Sum_probs=112.3

Q ss_pred             EEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEee-cc
Q 016199           96 LIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTD-EA  171 (393)
Q Consensus        96 ~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~-~~  171 (393)
                      .+++.. .+|.|..||.++++    +......+..|++++|.+||     +.+|++...+.+..+|.+.  .+.... ..
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~----v~~~~~~g~~~~~v~fSpDG-----~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYE----IKTVLDTGYAVHISRLSASG-----RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCC----EEEEEECSSCEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             EEEEEEcCCCEEEEEECCCCc----EEEEEeCCCCeeEEEECCCC-----CEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            444444 47899999998876    44444456679999999999     3688887666788888643  212111 11


Q ss_pred             CCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC------------ccCCC
Q 016199          172 EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD------------LYFAN  238 (393)
Q Consensus       172 ~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~------------l~~~n  238 (393)
                      ...+...+....+++||. ||++.                 ...+.+..+|..+++.......            .....
T Consensus       104 ~~~~~~~~~s~~~SpDG~~l~vs~-----------------~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
T d1qksa2         104 GSEARSIETSKMEGWEDKYAIAGA-----------------YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA  166 (432)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEE-----------------EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             CCCCCCeEEecccCCCCCEEEEEc-----------------CCCCeEEEEeCccccceeeeccCCccccceeccCCCcee
Confidence            111222223334567995 67774                 2345788899888775543221            12234


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++.+++||..++++....+.|..++....+......+.  ....|.+++++++|++.++..
T Consensus       167 ~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~--~g~~~~~~~~spdg~~~~va~  225 (432)
T d1qksa2         167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAA  225 (432)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc--ccCccccceECCCCCEEEEec
Confidence            67889999999999999999999987543222222221  234688999999999554444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.95  E-value=1e-07  Score=85.32  Aligned_cols=192  Identities=15%  Similarity=0.189  Sum_probs=119.9

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAY  153 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~  153 (393)
                      .++..|....-.+++++++|+.|++++.||.|..|+.+++.   ....+.. ......++++.++|      +++++...
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~h~~~v~~v~~~~~g------~~~~~~~d   75 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI---SNRVFPDVHATMITGIKTTSKG------DLFTVSWD   75 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEECSSCSCSSCEEEEEECTTS------CEEEEETT
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCCcEEEEEeeccc------eeecccce
Confidence            45556765667789999999999999999999999987654   1222211 23446889999999      88888777


Q ss_pred             CceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe
Q 016199          154 KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV  231 (393)
Q Consensus       154 ~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~  231 (393)
                      +.+..++..+  ..... .........+..+++.++|.+.++.                  ..+.+..++..  +.....
T Consensus        76 ~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~~~~~------------------~~~~i~~~~~~--~~~~~~  134 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSK-AVANKLSSQPLGLAVSADGDIAVAA------------------CYKHIAIYSHG--KLTEVP  134 (299)
T ss_dssp             TEEEEECSSSSSSCTTS-CCEEECSSCEEEEEECTTSSCEEEE------------------ESSEEEEEETT--EEEEEE
T ss_pred             eeEEEeccCCccccccc-ccccccccccccccccccccccccc------------------ccccccccccc--cccccc
Confidence            7777777543  11000 0000011234578888999766653                  23457777753  332222


Q ss_pred             cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          232 SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       232 ~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      . ......+++++|++.+++ .+..+.|..|++++.........  ..+.....++++++|.+.++...
T Consensus       135 ~-~~~~~~~~~s~~~~~l~~-g~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         135 I-SYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             C-SSCEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred             c-cccccccccccccccccc-ccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence            1 234567899999976655 44678999999865422111111  12333466888999987765543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.92  E-value=1.9e-07  Score=85.12  Aligned_cols=186  Identities=9%  Similarity=-0.017  Sum_probs=110.7

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEE-EEeCCCceEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMI-VADAYKGLLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~-v~~~~~gl~~id~~g  163 (393)
                      |..++++|+|+.|..+. ++.|+.++.+...   ..+.+.........+++.++|      +++ .|...+-|..++...
T Consensus        20 ~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~---~~~~~~~H~~~v~~~~~sp~g------~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT---DTEIYTEHSHQTTVAKTSPSG------YYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             CCCCEECTTSSEEEEEE-TTEEEEEETTCSS---CCEEECCCSSCEEEEEECTTS------SEEEEEETTSEEEEEESSS
T ss_pred             eEEEEEcCCCCEEEEEe-CCEEEEEECCCCc---eeEEEcCCCCCEEEEEEeCCC------CeEeccccCceEeeeeeec
Confidence            45588999999776654 5678999887654   133443334567899999999      554 454455577777644


Q ss_pred             -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEecCccCCCcEE
Q 016199          164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSDLYFANGVV  241 (393)
Q Consensus       164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~~~l~~~ngi~  241 (393)
                       ...+.....+.. ..+.++++.++|..+++....               ....+..++.++++.. .+.......+.++
T Consensus        90 ~~~~~~~~~~~~~-~~v~~v~~s~d~~~l~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~  153 (311)
T d1nr0a1          90 TTHILKTTIPVFS-GPVKDISWDSESKRIAAVGEG---------------RERFGHVFLFDTGTSNGNLTGQARAMNSVD  153 (311)
T ss_dssp             TTCCEEEEEECSS-SCEEEEEECTTSCEEEEEECC---------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEE
T ss_pred             ccccccccccccc-Ccccccccccccccccccccc---------------cccccccccccccccccccccccccccccc
Confidence             111111111111 235688999999766653211               1112334454444332 2222234467899


Q ss_pred             EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ++|+++.++++.+..+.|..|+++..   +..............++.+++|++.++..
T Consensus       154 ~~~~~~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         154 FKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTG  208 (311)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeeccccccccccccccccc---ccccccccccccccccccCcccccccccc
Confidence            99999888888888889999997532   22222222222335688999999776654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=9.7e-07  Score=80.64  Aligned_cols=188  Identities=14%  Similarity=0.114  Sum_probs=114.2

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      ..-.+++++++|+.|.+|+ +|.|..|+..............  ...+....+++.++|     +.|.++...+.|..+|
T Consensus        52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-----~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----CTLIVGGEASTLSIWD  125 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-----SEEEEEESSSEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-----CEEEEeeccccccccc
Confidence            4457799999999888876 7889999987543211122221  123446889999998     1355554445566777


Q ss_pred             CCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-ccCCC
Q 016199          161 GNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LYFAN  238 (393)
Q Consensus       161 ~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~~~n  238 (393)
                      ... ...+.....+. ...+..+.+.+++.+.++.                 ...+.+..++..+++....... .....
T Consensus       126 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~-----------------~~d~~i~~~~~~~~~~~~~~~~~~~~v~  187 (337)
T d1gxra_         126 LAAPTPRIKAELTSS-APACYALAISPDSKVCFSC-----------------CSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             CCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccc-----------------cccccccccccccccccccccccccccc
Confidence            644 11111111111 1234567888998766653                 2345688899887776554333 34457


Q ss_pred             cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      .++++++++.++++. ..+.+..|++...+  ....+  ...+....++++++|++.++..
T Consensus       188 ~l~~s~~~~~~~~~~-~d~~v~i~d~~~~~--~~~~~--~~~~~i~~l~~~~~~~~l~~~~  243 (337)
T d1gxra_         188 CIDISNDGTKLWTGG-LDNTVRSWDLREGR--QLQQH--DFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             EEEECTTSSEEEEEE-TTSEEEEEETTTTE--EEEEE--ECSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccc-ccccccccccccce--eeccc--ccccceEEEEEcccccccceec
Confidence            789999997766654 57889999975321  11222  2233445678899998766543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.90  E-value=1.6e-06  Score=78.83  Aligned_cols=243  Identities=10%  Similarity=-0.014  Sum_probs=145.6

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC--Cc-
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY--KG-  155 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~--~g-  155 (393)
                      .+....-.+++++|+|+.|.+|+.+|.|..|+........ ...+....+....+++.++|      +++++...  .. 
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~d~------~~l~~~~~~~~~~  127 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSES------KRIAAVGEGRERF  127 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTS------CEEEEEECCSSCS
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc-ccccccccCccccccccccc------ccccccccccccc
Confidence            3433456778999999988899999999999987654111 12233234567899999998      55444332  12 


Q ss_pred             eEEEeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-
Q 016199          156 LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-  233 (393)
Q Consensus       156 l~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-  233 (393)
                      +..++.+..+.. ....+. ...+..+++.++|. ++++.                 ...+.|..||..+++....... 
T Consensus       128 ~~v~~~~~~~~~-~~l~~h-~~~v~~v~~~~~~~~~l~sg-----------------s~d~~i~i~d~~~~~~~~~~~~~  188 (311)
T d1nr0a1         128 GHVFLFDTGTSN-GNLTGQ-ARAMNSVDFKPSRPFRIISG-----------------SDDNTVAIFEGPPFKFKSTFGEH  188 (311)
T ss_dssp             EEEEETTTCCBC-BCCCCC-SSCEEEEEECSSSSCEEEEE-----------------ETTSCEEEEETTTBEEEEEECCC
T ss_pred             cccccccccccc-cccccc-ccccccccccccceeeeccc-----------------ccccccccccccccccccccccc
Confidence            334444321111 111121 12356888999885 44442                 2345688899887765554433 


Q ss_pred             ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec---cCCCC---CCeEEECCCCCEEEEEecCcchhhh
Q 016199          234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE---TLPGL---PDNIRYDGEGHYLIALATEFSTYWD  307 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~---~l~g~---P~~i~~d~~G~lwva~~~~r~~~~~  307 (393)
                      ....+.++++|+++.++. ....+.+..|++....  ....+..   ...+.   -..++++++|++.++....      
T Consensus       189 ~~~i~~v~~~p~~~~l~~-~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D------  259 (311)
T d1nr0a1         189 TKFVHSVRYNPDGSLFAS-TGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------  259 (311)
T ss_dssp             SSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------
T ss_pred             cccccccccCcccccccc-cccccccccccccccc--ccccccccccccccccccccccccCCCCCEEEEEeCC------
Confidence            344578999999976654 4457889999875321  1111210   11122   2357889999977765433      


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--CCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVHHRGILHLDV  384 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~~~~i~~~~~  384 (393)
                                                  +.|..+|. +++.++.+....  ...+..+...++.|+.++ .+..|...|+
T Consensus       260 ----------------------------g~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s-~dG~i~~wd~  310 (311)
T d1nr0a1         260 ----------------------------KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS-ANGFINFVNP  310 (311)
T ss_dssp             ----------------------------SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE-TTCCEEEEET
T ss_pred             ----------------------------CeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEE-CCCEEEEEeC
Confidence                                        34666674 677777776543  223344555677888887 4567777665


Q ss_pred             C
Q 016199          385 N  385 (393)
Q Consensus       385 ~  385 (393)
                      +
T Consensus       311 d  311 (311)
T d1nr0a1         311 E  311 (311)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.5e-06  Score=76.79  Aligned_cols=186  Identities=8%  Similarity=0.046  Sum_probs=115.0

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST  164 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~  164 (393)
                      -.++++.++|+.|.+++.+|.|..|+....... ....+.........+++++++     ..+..+.....+..++....
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~-----~~l~s~~~d~~i~~~~~~~~  173 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDS-----KVCFSCCSDGNIAVWDLHNQ  173 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEeecccccccccccccccc-ccccccccccccccccccccc-----cccccccccccccccccccc
Confidence            357899999998989999999999997754311 122222223456778898888     13444544556777876551


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcC
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP  244 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~  244 (393)
                      +.... ..+. ...+..+++.++|...+..                 ...+.+..||..+++.............+++++
T Consensus       174 ~~~~~-~~~~-~~~v~~l~~s~~~~~~~~~-----------------~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~  234 (337)
T d1gxra_         174 TLVRQ-FQGH-TDGASCIDISNDGTKLWTG-----------------GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP  234 (337)
T ss_dssp             EEEEE-ECCC-SSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECSSCEEEEEECT
T ss_pred             ccccc-cccc-ccccccccccccccccccc-----------------cccccccccccccceeecccccccceEEEEEcc
Confidence            11111 1111 1235578888988654442                 235678899988776544333334567789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       245 dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                      +++.+++ ....+.+..|+++...   ..... ...+....++++++|++.++...
T Consensus       235 ~~~~l~~-~~~d~~i~i~d~~~~~---~~~~~-~~~~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         235 TGEWLAV-GMESSNVEVLHVNKPD---KYQLH-LHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             TSSEEEE-EETTSCEEEEETTSSC---EEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccce-eccccccccccccccc---ccccc-ccccccceEEECCCCCEEEEEeC
Confidence            9977655 4457889999985432   11111 12233466889999997776553

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.82  E-value=1.2e-06  Score=83.25  Aligned_cols=188  Identities=14%  Similarity=0.059  Sum_probs=113.0

Q ss_pred             CceEEEecCC-CEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           85 PEDLLYDAHS-KLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        85 Pe~ia~d~~g-~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      |..++++.+. +.+++.. .+|.|..||..+++    .......+..|.+++|++||     +.+|++...+.+..+|.+
T Consensus        21 p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~----~~~~l~~g~~~~~vafSPDG-----k~l~~~~~d~~v~vwd~~   91 (426)
T d1hzua2          21 PKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK----IVKVIDTGYAVHISRMSASG-----RYLLVIGRDARIDMIDLW   91 (426)
T ss_dssp             CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCS----EEEEEECCSSEEEEEECTTS-----CEEEEEETTSEEEEEETT
T ss_pred             CCcccccCCCCeEEEEEEcCCCEEEEEECCCCc----EEEEEeCCCCeeEEEECCCC-----CEEEEEeCCCCEEEEEcc
Confidence            3334444443 3444544 47899999998876    43333445679999999999     367888766668888876


Q ss_pred             c--eEEEee-ccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-----
Q 016199          163 S--TVLLTD-EAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-----  233 (393)
Q Consensus       163 g--~~~l~~-~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-----  233 (393)
                      +  ...... .....+...+.++++.+||+ ++++.                 ...+.+..+|..++........     
T Consensus        92 t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~-----------------~~~~~v~i~d~~~~~~~~~~~~~~~~~  154 (426)
T d1hzua2          92 AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA-----------------YWPPQFAIMDGETLEPKQIVSTRGMTV  154 (426)
T ss_dssp             SSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE-----------------EESSEEEEEETTTCCEEEEEECCEECS
T ss_pred             CCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee-----------------cCCCeEEEEcCCccceeEEeeccCCCc
Confidence            4  222211 11111112233445567895 66764                 2234677788877765443221     


Q ss_pred             -------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199          234 -------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT  300 (393)
Q Consensus       234 -------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~  300 (393)
                             ......++.++|+..++++....+++..+............ . .....|.++.++++|++++....
T Consensus       155 ~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         155 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS-I-GAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE-E-ECCSSEEEEEECTTSCEEEEEET
T ss_pred             cceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE-e-ccCCccEeeeECCCCcEEEeeee
Confidence                   11223467788888888888888888877754322222221 2 22335788999999997776653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.79  E-value=3.8e-07  Score=88.01  Aligned_cols=170  Identities=16%  Similarity=0.217  Sum_probs=103.7

Q ss_pred             CceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec---------CCCceeeeEECCC----
Q 016199           73 GSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN---------TGGRPLGIAFANS----  138 (393)
Q Consensus        73 ~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~---------~~~~p~gl~~d~~----  138 (393)
                      ..+.+.++ +..|.+|++.+||+ ||+... .|+|++++.+++.    ...+..         ..+..++|+++++    
T Consensus        18 ~~~~ia~~-L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~----~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n   91 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGS----VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN   91 (450)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCC----EEEEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred             EEEEEECC-CCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCc----EeecccCCccccccCCCCceeeEEeCCCCccC
Confidence            45667666 79999999999997 888886 6999999877665    332221         1245689999874    


Q ss_pred             CCCCCceEEEEEeCC-----------Cc--eEEE--eCCc-----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCc
Q 016199          139 DPDADRITMIVADAY-----------KG--LLKI--SGNS-----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNK  198 (393)
Q Consensus       139 G~~~~~~~L~v~~~~-----------~g--l~~i--d~~g-----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~  198 (393)
                      +      .+|++-..           ..  +.++  +.+.     .+.+..........+...|++++||.|||+.....
T Consensus        92 ~------~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~  165 (450)
T d1crua_          92 P------YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG  165 (450)
T ss_dssp             C------EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred             C------EEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCC
Confidence            6      88886321           00  2222  2222     11222222222223456799999999999854321


Q ss_pred             cchhh--he-------------ehhcccCCCcEEEEEeCCCCe-----------EEEEecCccCCCcEEEcCCCCEEEEE
Q 016199          199 YYLRE--YI-------------LDIFEGKPNGRLLSFDPVTKE-----------TKVLVSDLYFANGVVLSPDQTHLVYC  252 (393)
Q Consensus       199 ~~~~~--~~-------------~~~~e~~~~g~l~~~d~~t~~-----------~~~~~~~l~~~ngi~~s~dg~~l~v~  252 (393)
                      .....  +.             ..-......|.|+|+++++..           .+.++.++..|.+++++++|+ ||++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~  244 (450)
T d1crua_         166 RNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQS  244 (450)
T ss_dssp             TTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEE
T ss_pred             cccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeec
Confidence            11000  00             000011335889999986542           145678888999999999874 8888


Q ss_pred             eCC
Q 016199          253 ETS  255 (393)
Q Consensus       253 ~~~  255 (393)
                      |.+
T Consensus       245 e~G  247 (450)
T d1crua_         245 EQG  247 (450)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.71  E-value=1.7e-05  Score=73.14  Aligned_cols=156  Identities=10%  Similarity=0.000  Sum_probs=94.1

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--  163 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--  163 (393)
                      .+++|+++|+.|.+++.++.|..|+.+++.- .....+....+....|++.++|     +.|..+..++-|..++.++  
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~-----~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDS-----NRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTT-----TEEEEEETTSCEEEEEEETTE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCC-----CEEEEEECCCeEEEEeecccc
Confidence            5789999999888888899999998875430 0122232234567899999998     1344454445566667543  


Q ss_pred             e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ecC-ccCCCc
Q 016199          164 T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VSD-LYFANG  239 (393)
Q Consensus       164 ~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~~-l~~~ng  239 (393)
                      . ..+.  ..+. ...+..+.++|+|+.+++...               .+.-+++.++.........  ... ......
T Consensus        85 ~~~~~~--~~~~-~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          85 WKPTLV--ILRI-NRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             EEEEEE--CCCC-SSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             cccccc--cccc-cccccccccccccccceeecc---------------cCcceeeeeeccccccccccccccccccccc
Confidence            2 2221  1111 133568899999975554211               2234566666554432221  111 223467


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ++++||++.+ ++.+..+.+..|+...
T Consensus       147 v~~~p~~~~l-~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         147 LDWHPNSVLL-AAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             EEECTTSSEE-EEEETTSCEEEEECCC
T ss_pred             ccccccccce-eccccCcEEEEEeecc
Confidence            8899999765 5556678888888753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.69  E-value=4.8e-06  Score=73.91  Aligned_cols=183  Identities=13%  Similarity=0.116  Sum_probs=110.7

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST  164 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~  164 (393)
                      -.++++.++|+ ++++..++.+..++...................+..+++.++|      ++.++.....+..++....
T Consensus        58 v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g------~~~~~~~~~~i~~~~~~~~  130 (299)
T d1nr0a2          58 ITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG------DIAVAACYKHIAIYSHGKL  130 (299)
T ss_dssp             EEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS------SCEEEEESSEEEEEETTEE
T ss_pred             EEEEEeeccce-eecccceeeEEEeccCCcccccccccccccccccccccccccc------ccccccccccccccccccc
Confidence            35688999987 7788889999988876443111111111234567899999999      7777766667777775432


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe--cCccCCCcEEE
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV--SDLYFANGVVL  242 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~--~~l~~~ngi~~  242 (393)
                      .....   .   .....+++.+++.++++-                 ...+.+..||..+++.....  ..-...+.+++
T Consensus       131 ~~~~~---~---~~~~~~~~s~~~~~l~~g-----------------~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  187 (299)
T d1nr0a2         131 TEVPI---S---YNSSCVALSNDKQFVAVG-----------------GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF  187 (299)
T ss_dssp             EEEEC---S---SCEEEEEECTTSCEEEEE-----------------ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEE
T ss_pred             ccccc---c---cccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccc
Confidence            11111   1   123467888988755542                 33567888888766654332  22344678999


Q ss_pred             cCCCCEEEEEeCCCCeEEEEEecCCC-CcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          243 SPDQTHLVYCETSMRRCRKFYIKGKN-AGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       243 s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      +++++.++.+ ...+.|..|++.... ......+. ........++++++|.+.++..
T Consensus       188 ~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~sgs  243 (299)
T d1nr0a2         188 SNNGAFLVAT-DQSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATGS  243 (299)
T ss_dssp             CTTSSEEEEE-ETTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccc-cccccccccccccccccccccccc-ccccccccccccccccceEEEc
Confidence            9999876554 457889999975321 11111111 1111234577899998766544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.62  E-value=5.3e-05  Score=68.17  Aligned_cols=159  Identities=7%  Similarity=0.069  Sum_probs=101.2

Q ss_pred             CCCceEEEecCCCEEEEEec-CC-eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DG-WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS  160 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g-~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id  160 (393)
                      ....+++|+|||+.|+++.. ++ .|+.++.+++.    ...+.........++++++|     +.|..+.....+..++
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~----~~~~~~~~~~v~~~~~spdg-----~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK----AEKFEENLGNVFAMGVDRNG-----KFAVVANDRFEIMTVD  113 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC----EEECCCCCCSEEEEEECTTS-----SEEEEEETTSEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc----EEEeeCCCceEEeeeecccc-----cccceecccccccccc
Confidence            45678999999998776554 43 57788888776    66655556678899999999     2455555556688888


Q ss_pred             CCc--eEEEeeccCCccccccccEEEcCCCcEE-EEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGMIY-FTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~-~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      .++  ........    .....++++.+||..+ ++......        ...+...+.+..+|..+++...+.......
T Consensus       114 ~~~~~~~~~~~~~----~~~~~~~~~spdg~~la~~~~~~~~--------~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~  181 (360)
T d1k32a3         114 LETGKPTVIERSR----EAMITDFTISDNSRFIAYGFPLKHG--------ETDGYVMQAIHVYDMEGRKIFAATTENSHD  181 (360)
T ss_dssp             TTTCCEEEEEECS----SSCCCCEEECTTSCEEEEEEEECSS--------TTCSCCEEEEEEEETTTTEEEECSCSSSBE
T ss_pred             ccccceeeeeecc----cccccchhhccceeeeeeecccccc--------ceeeccccceeeeccccCceeeeccccccc
Confidence            766  22221111    1234578999999544 43211110        011233456788999888776665555556


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEE
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFY  263 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~  263 (393)
                      .++++++||+.|+++.. ++.+..++
T Consensus       182 ~~~~~spdg~~l~~~s~-~~~~~~~d  206 (360)
T d1k32a3         182 YAPAFDADSKNLYYLSY-RSLDPSPD  206 (360)
T ss_dssp             EEEEECTTSCEEEEEES-CCCCCEEC
T ss_pred             ccccccCCCCEEEEEeC-CCceEccc
Confidence            77899999998877653 33343333

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.58  E-value=3.1e-06  Score=80.76  Aligned_cols=209  Identities=13%  Similarity=0.094  Sum_probs=120.1

Q ss_pred             CccCCCceEE--EecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCC-
Q 016199           80 GVLKGPEDLL--YDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAY-  153 (393)
Q Consensus        80 g~~~~Pe~ia--~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-  153 (393)
                      |....|.-..  .++||+.||+... +.+|.++++++.+    .....  +.+..|+++++.++|     +.+||+... 
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k----~~~ii~iP~g~gphgi~~spdg-----~t~YV~~~~~  137 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMK----TDKITHIPNVQAIHGLRLQKVP-----KTNYVFCNAE  137 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE----EEEEEECTTCCCEEEEEECCSS-----BCCEEEEEEC
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCc----EeeEEecCCCCCccceEEeccC-----CEEEEEeccC
Confidence            4444454433  2578999999876 7799999998865    33332  346789999999999     356777432 


Q ss_pred             Cce------------------EEEeCCceEEEee-ccCCccccccccEEEcCCC-cEEEEeCCCccch---------hhh
Q 016199          154 KGL------------------LKISGNSTVLLTD-EAEGQKFKLTDGVDVADDG-MIYFTDASNKYYL---------REY  204 (393)
Q Consensus       154 ~gl------------------~~id~~g~~~l~~-~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~---------~~~  204 (393)
                      ..+                  ..+|..+.+.... ...    ..+.++++++|| .+|+++.......         .++
T Consensus       138 ~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~----~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~  213 (441)
T d1qnia2         138 FVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD----GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDW  213 (441)
T ss_dssp             SCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCE
T ss_pred             CcccccCcccccccccccceEEeecCccceeeEEEecC----CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEE
Confidence            222                  2345444111110 111    246789999999 5777764322110         000


Q ss_pred             e--------ehhc-----ccCCCcEEEEEeC-CCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC---
Q 016199          205 I--------LDIF-----EGKPNGRLLSFDP-VTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK---  267 (393)
Q Consensus       205 ~--------~~~~-----e~~~~g~l~~~d~-~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~---  267 (393)
                      +        ..+.     .-.+..++..++. .+.+.......-..|+|++++|||+++|+++...+.+..++++.-   
T Consensus       214 i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         214 VVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             EEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH
Confidence            0        0000     0011123444443 322333333334569999999999999999999999999998521   


Q ss_pred             ---CCcceeeee-ccCCC-CCCeEEECCCCCEEEEEecC
Q 016199          268 ---NAGRVEKFI-ETLPG-LPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       268 ---~~~~~~~~~-~~l~g-~P~~i~~d~~G~lwva~~~~  301 (393)
                         +......+. +...| .|-..++|++|+.|.++...
T Consensus       294 ~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d  332 (441)
T d1qnia2         294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID  332 (441)
T ss_dssp             TTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             hhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence               111111111 11111 24556899999999887644

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=7.5e-05  Score=65.13  Aligned_cols=159  Identities=11%  Similarity=0.079  Sum_probs=98.0

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLL  157 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~  157 (393)
                      .|....-.+++++|+++.|.+++.||.|..|+.+++.   ....+.........+++++++      .+++. .....+.
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~---~~~~~~~h~~~V~~~~~~~~~------~~~~~~~~~~~~~   84 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSG------KLLASCSADMTIK   84 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTS------SEEEEEETTSCCC
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---EEEEEeCCCCcEEEEeeeccc------ccccccccccccc
Confidence            3433445679999999988899999999999987654   133343334567889999988      55444 3334444


Q ss_pred             EEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccC
Q 016199          158 KISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYF  236 (393)
Q Consensus       158 ~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~  236 (393)
                      ..+........ ...+. ......+.+.+++...++-                 ...+.+..+|..+++... +......
T Consensus        85 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~d~~~~~~~~~~~~~~~~~~~~~~~  145 (317)
T d1vyhc1          85 LWDFQGFECIR-TMHGH-DHNVSSVSIMPNGDHIVSA-----------------SRDKTIKMWEVQTGYCVKTFTGHREW  145 (317)
T ss_dssp             EEETTSSCEEE-CCCCC-SSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ccccccccccc-ccccc-cccceeeeccCCCceEEee-----------------ccCcceeEeecccceeeeEEccCCCc
Confidence            55543311111 11111 1224467788888665552                 234567788877665433 3333445


Q ss_pred             CCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      ...++++++++.+ ++....+.|..+++..
T Consensus       146 ~~~~~~~~~~~~l-~~~~~d~~v~~~~~~~  174 (317)
T d1vyhc1         146 VRMVRPNQDGTLI-ASCSNDQTVRVWVVAT  174 (317)
T ss_dssp             EEEEEECTTSSEE-EEEETTSCEEEEETTT
T ss_pred             ceeeecccCCCEE-EEEeCCCeEEEEeecc
Confidence            6778899999755 4455677888888753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.53  E-value=2.6e-05  Score=73.54  Aligned_cols=164  Identities=10%  Similarity=0.101  Sum_probs=100.2

Q ss_pred             EEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC----CCCCCCCceEEEEEe
Q 016199           76 KVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA----NSDPDADRITMIVAD  151 (393)
Q Consensus        76 ~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d----~~G~~~~~~~L~v~~  151 (393)
                      .+..|  ..|.+++++|||++||+++.++.|..|+.++++... ...+ ..+..|.+++++    +||     +.++++.
T Consensus        57 ~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~-~~~i-~~~~~~~~~~~s~~~spDG-----~~l~v~~  127 (426)
T d1hzua2          57 VIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-VAEI-KIGIEARSVESSKFKGYED-----RYTIAGA  127 (426)
T ss_dssp             EEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-EEEE-ECCSEEEEEEECCSTTCTT-----TEEEEEE
T ss_pred             EEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE-EEEE-eCCCCCcceEEeeeecCCC-----CEEEEee
Confidence            34444  469999999999999999999999999998765111 1122 234456666654    577     3577876


Q ss_pred             CCC-ceEEEeCCc---eEEEeec---cCCccc---cccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199          152 AYK-GLLKISGNS---TVLLTDE---AEGQKF---KLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSF  220 (393)
Q Consensus       152 ~~~-gl~~id~~g---~~~l~~~---~~g~~~---~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~  220 (393)
                      ... .+..+|.+.   ...+...   .....+   .....+...+++ .+|++.                 ...+.+..+
T Consensus       128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~-----------------~~~~~i~~~  190 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-----------------KETGKVLLV  190 (426)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-----------------TTTTEEEEE
T ss_pred             cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec-----------------CCCCeEEEE
Confidence            544 455567654   2222111   111111   112345566666 344443                 234456555


Q ss_pred             eCCCCe--EEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          221 DPVTKE--TKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       221 d~~t~~--~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      +.....  ..........+.+++++++++.++++......+..++..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~  237 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK  237 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecc
Confidence            543332  112233446789999999999999999999999998875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=4.6e-06  Score=79.55  Aligned_cols=166  Identities=12%  Similarity=0.062  Sum_probs=108.2

Q ss_pred             eEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC----CCCCCCCceEEEEE
Q 016199           75 EKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA----NSDPDADRITMIVA  150 (393)
Q Consensus        75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d----~~G~~~~~~~L~v~  150 (393)
                      ..+..|  ..|.+++++|||+++|+++.++.|..|+.+++... ....+ ..+..|.++++.    +||     +.||++
T Consensus        56 ~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~-~~~~i-~~~~~~~~~~~s~~~SpDG-----~~l~vs  126 (432)
T d1qksa2          56 TVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-TVAEI-KIGSEARSIETSKMEGWED-----KYAIAG  126 (432)
T ss_dssp             EEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-EEEEE-ECCSEEEEEEECCSTTCTT-----TEEEEE
T ss_pred             EEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce-EEEEE-ecCCCCCCeEEecccCCCC-----CEEEEE
Confidence            344444  47999999999999999999999999998765411 01222 334567777664    578     357777


Q ss_pred             eC-CCceEEEeCCc---eEEEee---ccCCc---cccccccEEEcCCCcE-EEEeCCCccchhhheehhcccCCCcEEEE
Q 016199          151 DA-YKGLLKISGNS---TVLLTD---EAEGQ---KFKLTDGVDVADDGMI-YFTDASNKYYLREYILDIFEGKPNGRLLS  219 (393)
Q Consensus       151 ~~-~~gl~~id~~g---~~~l~~---~~~g~---~~~~~~~l~~d~dG~l-~~td~~~~~~~~~~~~~~~e~~~~g~l~~  219 (393)
                      .. .+.+..+|.++   ...+..   .....   +......+..+++|.. +++.                 ...+.+..
T Consensus       127 ~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~-----------------~~~~~i~~  189 (432)
T d1qksa2         127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----------------KETGKILL  189 (432)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----------------TTTTEEEE
T ss_pred             cCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE-----------------ccCCeEEE
Confidence            55 34577788655   222211   11111   1122345778888854 4543                 34568899


Q ss_pred             EeCCCCeEEEE--ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          220 FDPVTKETKVL--VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       220 ~d~~t~~~~~~--~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                      +|..+.+...+  ...-..+++++++|||++++++....+.+..++.+.
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            98776543222  223356899999999999999998888999988753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=2.3e-05  Score=70.91  Aligned_cols=150  Identities=11%  Similarity=-0.061  Sum_probs=86.6

Q ss_pred             EecCCCEEEEEec-----CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC----------C
Q 016199           90 YDAHSKLIYTGCE-----DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY----------K  154 (393)
Q Consensus        90 ~d~~g~~L~~~~~-----~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~----------~  154 (393)
                      ..|||+++|+...     ...|+.+|.++++    .......+..| ++++++||     +.||+++..          +
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~----~~~~~~~g~~~-~~a~SpDg-----~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGR----VIGMIDGGFLP-NPVVADDG-----SFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTE----EEEEEEECSSC-EEEECTTS-----SCEEEEEEEEEETTEEEEEE
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCc----EEEEEECCCCC-ceEEcCCC-----CEEEEEeCCCccccccCCCC
Confidence            4678999998753     3469999988764    33222333344 79999999     358887532          2


Q ss_pred             ceEEEeCCc---eEEEeecc--CCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          155 GLLKISGNS---TVLLTDEA--EGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       155 gl~~id~~g---~~~l~~~~--~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      .|..+|..+   ...+....  .......++.++++++| .+++++.+                ....+..++..+++..
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEE
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCceeeeeecCCCcEe
Confidence            377788765   22221111  11112346789999998 57777532                2234555666555432


Q ss_pred             EEecC--------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          229 VLVSD--------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       229 ~~~~~--------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                      .....        ......+++++|++.+++.....+.+..++..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            21110        11233466777877777776666666665543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.47  E-value=0.00017  Score=63.91  Aligned_cols=192  Identities=14%  Similarity=0.073  Sum_probs=100.5

Q ss_pred             EecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCce
Q 016199           77 VGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGL  156 (393)
Q Consensus        77 l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl  156 (393)
                      ...|....-.+++|+++++.|.+++.||.|..|+..++.   ....+.........+++.++|     +.++.+....-+
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~v~~~~~~-----~~l~~~~~d~~i  121 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSG-----NYVACGGLDNIC  121 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---EEEEEECSCSCEEEEEECTTS-----SEEEEEETTCCE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce---eEEEEecccccEEeeEeeccc-----eeeeeeccccee
Confidence            335554556779999999989999999999999987654   133343334567899999998     134445444444


Q ss_pred             EEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          157 LKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       157 ~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                      ..++...   .........+.. ..........+..+....                  .......++..+.........
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  182 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHT-GYLSCCRFLDDNQIVTSS------------------GDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCS-SCEEEEEEEETTEEEEEE------------------TTTEEEEEETTTTEEEEEEEC
T ss_pred             ecccccccccccccceeccccc-cccccccccccccccccc------------------ccccccccccccccccccccc
Confidence            4554322   101111111111 001111222223333321                  122344444443333222221


Q ss_pred             -ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          234 -LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       234 -l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                       ..........+++. ++++....+.|..|++...+  ....+. ...+....++++++|+++++..
T Consensus       183 ~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~--~~~~~~-~h~~~i~~v~~~p~~~~l~s~s  245 (340)
T d1tbga_         183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cceeEeeeccccccc-eeEEeecCceEEEEECCCCc--EEEEEe-CCCCCeEEEEECCCCCEEEEEe
Confidence             22234445556664 55666678899999875321  122222 2223345688999998776554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=0.00014  Score=66.34  Aligned_cols=235  Identities=13%  Similarity=0.119  Sum_probs=129.6

Q ss_pred             ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-e
Q 016199           86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-T  164 (393)
Q Consensus        86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~  164 (393)
                      .+++++++|+.|.+++.+|.|..++...+.   ..............+.+.+++     ..+..+...+.+..++... .
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~-----~~~~~~~~~~~i~~~d~~~~~  196 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSG-----DKLVSGSGDRTVRIWDLRTGQ  196 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTS-----SEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEECCCCCcceecccccccccccccccc---ccccccccccccccccccccc-----ccccccccceeeeeeeccccc
Confidence            468999999999999999999999987653   122222223456788888877     2566665555577777665 2


Q ss_pred             EEEeeccCCccccccccEEEc-CCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--------cc
Q 016199          165 VLLTDEAEGQKFKLTDGVDVA-DDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--------LY  235 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d-~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--------l~  235 (393)
                      ..........    ...+.+. .+|.+.++.                 ...+.+..+|..++........        ..
T Consensus       197 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~-----------------~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         197 CSLTLSIEDG----VTTVAVSPGDGKYIAAG-----------------SLDRAVRVWDSETGFLVERLDSENESGTGHKD  255 (388)
T ss_dssp             EEEEEECSSC----EEEEEECSTTCCEEEEE-----------------ETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             cccccccccc----cccccccCCCCCeEEEE-----------------cCCCeEEEeecccCccceeeccccccccCCCC
Confidence            2221111111    1233344 366655542                 2345688888776654332211        12


Q ss_pred             CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc---------eeeeeccCCCCCCeEEECCCCCEEEEEecCcchhh
Q 016199          236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR---------VEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYW  306 (393)
Q Consensus       236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~---------~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~  306 (393)
                      ....++++++++.++. .+..+.|..|++.......         ..............++++++|++.++....     
T Consensus       256 ~v~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----  329 (388)
T d1erja_         256 SVYSVVFTRDGQSVVS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----  329 (388)
T ss_dssp             CEEEEEECTTSSEEEE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----
T ss_pred             CEEEEEECCCCCEEEE-EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC-----
Confidence            3467899999976654 4567889999875321100         000000111223457788888876655433     


Q ss_pred             hhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEE-------eCCEEEEEecCCCe
Q 016199          307 DLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIK-------IGDHLYCGSVHHRG  378 (393)
Q Consensus       307 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~-------~~g~Lyigs~~~~~  378 (393)
                                                   +.|..+|. +++.+..+..... .+..+..       .++.+.+++-.+..
T Consensus       330 -----------------------------g~i~vwd~~~~~~~~~l~~H~~-~V~~~~~~~~~~~spd~~~l~s~s~Dg~  379 (388)
T d1erja_         330 -----------------------------RGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNVFATGSGDCK  379 (388)
T ss_dssp             -----------------------------SEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             -----------------------------CEEEEEECCCCcEEEEEeCCCC-CEEEEEEecCcccCCCCCEEEEEeCCCE
Confidence                                         45777774 5788877764331 2222221       24554444434555


Q ss_pred             EEEEeCC
Q 016199          379 ILHLDVN  385 (393)
Q Consensus       379 i~~~~~~  385 (393)
                      |...+++
T Consensus       380 I~iW~~~  386 (388)
T d1erja_         380 ARIWKYK  386 (388)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeee
Confidence            5555554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.45  E-value=6.8e-06  Score=73.79  Aligned_cols=140  Identities=16%  Similarity=0.118  Sum_probs=84.8

Q ss_pred             eeEECCCCCCCCceEE-EEEeCCCceEEEeCCceEEEee-ccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehh
Q 016199          132 GIAFANSDPDADRITM-IVADAYKGLLKISGNSTVLLTD-EAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDI  208 (393)
Q Consensus       132 gl~~d~~G~~~~~~~L-~v~~~~~gl~~id~~g~~~l~~-~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~  208 (393)
                      |+++.++|      ++ +++...+.|..+|.+..+.+.. ....  ...+.+++++||| .+|+++              
T Consensus         1 g~a~~~~~------~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~--~~~p~~l~~spDG~~l~v~~--------------   58 (346)
T d1jmxb_           1 GPALKAGH------EYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLN--------------   58 (346)
T ss_dssp             CCCCCTTC------EEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEE--------------
T ss_pred             CccCCCCC------cEEEEEcCCCEEEEEECCCCCEEEEEEcCC--CCCcceEEECCCCCEEEEEE--------------
Confidence            46677777      55 4455566799999876222221 1111  1346799999999 477875              


Q ss_pred             cccCCCcEEEEEeCCCCeEEEEecC-------ccCCCcEEEcCCCCEEEEEeCC-----------CCeEEEEEecCCCC-
Q 016199          209 FEGKPNGRLLSFDPVTKETKVLVSD-------LYFANGVVLSPDQTHLVYCETS-----------MRRCRKFYIKGKNA-  269 (393)
Q Consensus       209 ~e~~~~g~l~~~d~~t~~~~~~~~~-------l~~~ngi~~s~dg~~l~v~~~~-----------~~ri~~~~~~g~~~-  269 (393)
                         ...+.|..||..+++.......       ...|.++++++||+.+|++...           ...+..++....+. 
T Consensus        59 ---~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          59 ---NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             ---TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             ---CCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence               3457899999998876533221       2358899999999999988642           45566666542211 


Q ss_pred             cceeeeeccCCCCCCeEEECCCCCEEEEE
Q 016199          270 GRVEKFIETLPGLPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       270 ~~~~~~~~~l~g~P~~i~~d~~G~lwva~  298 (393)
                      ......  ..+.....+....+|.+++..
T Consensus       136 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         136 KPVRTF--PMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             CCSEEE--ECCSSCCCEEECTTSCEEEES
T ss_pred             eEEEee--eccCceEEEEecCCCEEEEeC
Confidence            111111  122223445566677777653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.44  E-value=6.8e-06  Score=73.49  Aligned_cols=133  Identities=20%  Similarity=0.122  Sum_probs=83.7

Q ss_pred             EEEEEeCCCceEEEeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          146 TMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       146 ~L~v~~~~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      .++.+...+.|..+|.+..+.+..-........+.+++++|||+ +|++.                 ...+.|..||..+
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~-----------------~~~~~v~v~D~~t   65 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV-----------------NKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE-----------------TTTTEEEEEETTT
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE-----------------CCCCeEEEEECCC
Confidence            45566556678888876522221111111123467999999995 67774                 3457899999998


Q ss_pred             CeEEEEecC------ccCCCcEEEcCCCCEEEEEeCC-----------CCeEEEEEecCCCCcceeeeeccCCCCCCeEE
Q 016199          225 KETKVLVSD------LYFANGVVLSPDQTHLVYCETS-----------MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIR  287 (393)
Q Consensus       225 ~~~~~~~~~------l~~~ngi~~s~dg~~l~v~~~~-----------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~  287 (393)
                      ++...-...      ...+.++++++|++.+|++...           ..++..++...   +...... ..+..|.+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~-~~~~~~~~~~  141 (337)
T d1pbyb_          66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAF-EAPRQITMLA  141 (337)
T ss_dssp             CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEE-ECCSSCCCEE
T ss_pred             CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC---CeEEEec-cccCCceEEE
Confidence            876543221      3457899999999999888652           45566666532   2222122 2334688999


Q ss_pred             ECCCCCEEEEEe
Q 016199          288 YDGEGHYLIALA  299 (393)
Q Consensus       288 ~d~~G~lwva~~  299 (393)
                      ++++|++.++..
T Consensus       142 ~s~dg~~l~~~~  153 (337)
T d1pbyb_         142 WARDGSKLYGLG  153 (337)
T ss_dssp             ECTTSSCEEEES
T ss_pred             EcCCCCEEEEEc
Confidence            999998665543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.44  E-value=1.1e-05  Score=72.83  Aligned_cols=170  Identities=11%  Similarity=0.074  Sum_probs=106.1

Q ss_pred             Eec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc--eEEEeCCc--e
Q 016199           90 YDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG--LLKISGNS--T  164 (393)
Q Consensus        90 ~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g--l~~id~~g--~  164 (393)
                      |+| ||+ +++....|.|+.++.+++.    ...+. ...+...+++.+||     +.|+++....|  |..++.++  .
T Consensus        10 fSP~dG~-~~a~~~~g~v~v~d~~~~~----~~~~~-~~~~v~~~~~spDg-----~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3          10 FSPLDGD-LIAFVSRGQAFIQDVSGTY----VLKVP-EPLRIRYVRRGGDT-----KVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEECGGG-CEEEEETTEEEEECTTSSB----EEECS-CCSCEEEEEECSSS-----EEEEEEEETTEEEEEEEETTTCCE
T ss_pred             ccCCCCC-EEEEEECCeEEEEECCCCc----EEEcc-CCCCEEEEEECCCC-----CEEEEEEcCCCCEEEEEECCCCcE
Confidence            788 887 4455567899999988765    55554 35678999999999     23444433443  66777765  3


Q ss_pred             EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEc
Q 016199          165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLS  243 (393)
Q Consensus       165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s  243 (393)
                      +.+. ..    ...+..+++++||+..++.                 ...+.++.++..+++...... .......++++
T Consensus        79 ~~~~-~~----~~~v~~~~~spdg~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          79 EKFE-EN----LGNVFAMGVDRNGKFAVVA-----------------NDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             EECC-CC----CCSEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             EEee-CC----CceEEeeeeccccccccee-----------------ccccccccccccccceeeeeecccccccchhhc
Confidence            3322 11    1235688999999655543                 335678999988877655443 34456789999


Q ss_pred             CCCCEEEEEeCC---------CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          244 PDQTHLVYCETS---------MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       244 ~dg~~l~v~~~~---------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      |||+.+.++...         .+.+..+++.+.   +..... ........+++.++|+..+
T Consensus       137 pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~~-~~~~~~~~~~~spdg~~l~  194 (360)
T d1k32a3         137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---KIFAAT-TENSHDYAPAFDADSKNLY  194 (360)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---EEEECS-CSSSBEEEEEECTTSCEEE
T ss_pred             cceeeeeeeccccccceeeccccceeeeccccC---ceeeec-ccccccccccccCCCCEEE
Confidence            999988765422         234666776432   222121 2222234467788887544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=0.00018  Score=65.60  Aligned_cols=185  Identities=12%  Similarity=0.094  Sum_probs=102.9

Q ss_pred             CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee------------------cCCCceeeeEECCCCCCCCce
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI------------------NTGGRPLGIAFANSDPDADRI  145 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~------------------~~~~~p~gl~~d~~G~~~~~~  145 (393)
                      .-.+++|+++|+.|.+|+ ++.|..|+..++.-   ...+.                  ........+++.++|      
T Consensus        64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~------  133 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG------  133 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---EEEECC-----------------CCCCBEEEEEECTTS------
T ss_pred             cEEEEEECCCCCEEEEEe-CCeEEEEEecccce---EeeecccccccccccccccccccCCCCCEEEEEECCCC------
Confidence            346799999999777775 78899998876531   11110                  011235689999998      


Q ss_pred             EE-EEEeCCCceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199          146 TM-IVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT  224 (393)
Q Consensus       146 ~L-~v~~~~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t  224 (393)
                      ++ ..+...+-|..++....+.+.. ..+. ...+..+.+.+++...++.                 ...+.+..+|..+
T Consensus       134 ~~l~s~~~dg~v~i~~~~~~~~~~~-~~~h-~~~v~~~~~~~~~~~~~~~-----------------~~~~~i~~~d~~~  194 (388)
T d1erja_         134 KFLATGAEDRLIRIWDIENRKIVMI-LQGH-EQDIYSLDYFPSGDKLVSG-----------------SGDRTVRIWDLRT  194 (388)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEE-ECCC-SSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTT
T ss_pred             Ccceecccccccccccccccccccc-cccc-ccccccccccccccccccc-----------------ccceeeeeeeccc
Confidence            54 4454344456667544111111 1111 1234577788887544442                 2356788888877


Q ss_pred             CeEEEEecCccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeee---ccCCC---CCCeEEECCCCCEEEE
Q 016199          225 KETKVLVSDLYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI---ETLPG---LPDNIRYDGEGHYLIA  297 (393)
Q Consensus       225 ~~~~~~~~~l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~---~~l~g---~P~~i~~d~~G~lwva  297 (393)
                      ...............+.+.+ +++ ++++....+.|..|+.....  ....+.   ....+   ....++++++|++.++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         195 GQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccCCCCC-eEEEEcCCCeEEEeecccCc--cceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            66554443333344455554 554 45555567889988875321  111111   01111   1245778899987665


Q ss_pred             Eec
Q 016199          298 LAT  300 (393)
Q Consensus       298 ~~~  300 (393)
                      ...
T Consensus       272 ~~~  274 (388)
T d1erja_         272 GSL  274 (388)
T ss_dssp             EET
T ss_pred             EEC
Confidence            443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.39  E-value=0.00049  Score=62.37  Aligned_cols=247  Identities=8%  Similarity=-0.055  Sum_probs=125.9

Q ss_pred             CceEEEecCCCEEEEEec----------CCeEEEEEcCCCCCcceeee-eec-------CCCceeeeEECCCCCCCCceE
Q 016199           85 PEDLLYDAHSKLIYTGCE----------DGWIKRVTLNDSPADSLVHN-WIN-------TGGRPLGIAFANSDPDADRIT  146 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~----------~g~I~~~~~~~~~~~~~~~~-~~~-------~~~~p~gl~~d~~G~~~~~~~  146 (393)
                      +.+++++|||+.||++..          ++.|..|+..+++    ... +..       ....|.++++.++|     +.
T Consensus        68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~  138 (373)
T d2madh_          68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL----PIADIELPDAPRFDVGPYSWMNANTPNN-----AD  138 (373)
T ss_pred             CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc----EEEEEecCCcceeEeccCCCcEEEEeCC-----Cc
Confidence            337999999999998753          3567888887664    221 111       12346778888777     24


Q ss_pred             EEEEeCC--CceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199          147 MIVADAY--KGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV  223 (393)
Q Consensus       147 L~v~~~~--~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~  223 (393)
                      +++....  ..+..++....+...      ....+..+.+.++| .+|++.                 ...+.+..++..
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~g~~~~v~~-----------------~~dg~~~~~~~~  195 (373)
T d2madh_         139 LLFFQFAAGPAVGLVVQGGSSDDQ------LLSSPTCYHIHPGAPSTFYLL-----------------CAQGGLAKTDHA  195 (373)
T ss_pred             EEEEEEcCCCceEEeeccCCeEEE------EeccceeEEEecCCCcEEEEE-----------------cCCCeEEEEEcC
Confidence            5655432  223333333211111      01234567788888 566664                 345678888877


Q ss_pred             CCeEEEEecC-------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCccee---------eeeccCCCCCCeEE
Q 016199          224 TKETKVLVSD-------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVE---------KFIETLPGLPDNIR  287 (393)
Q Consensus       224 t~~~~~~~~~-------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~---------~~~~~l~g~P~~i~  287 (393)
                      +++.......       ...+.....++++..  +.....++++.++..+.......         ......|+.+..++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (373)
T d2madh_         196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI--VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             CceeeEEEeeeccccCccceeeeEEECCCceE--EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeE
Confidence            6655433211       122333444444433  33344567777665432110000         00111222334456


Q ss_pred             ECCCCCE-EEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEE-E
Q 016199          288 YDGEGHY-LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAI-K  364 (393)
Q Consensus       288 ~d~~G~l-wva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~-~  364 (393)
                      ..++|.. ++..... ..                        .......+.+..+|. .++.+..+..+.... .... +
T Consensus       274 ~~~d~~~~~~~~~~~-~~------------------------~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~-~~a~sp  327 (373)
T d2madh_         274 YLKSSDGIYLLTSEQ-SA------------------------WKLHAAAKEVTSVTGLVGQTSSQISLGHDVD-AISVAQ  327 (373)
T ss_pred             EecCCCeEEEecCCC-ce------------------------EEeecCCCeEEEEECCCCcEEEEecCCCCee-EEEECC
Confidence            6666653 3322211 00                        000111234677775 577777665433211 2223 3


Q ss_pred             eCCE-EEEEecCCCeEEEEeCCCCCCCC
Q 016199          365 IGDH-LYCGSVHHRGILHLDVNQHPARA  391 (393)
Q Consensus       365 ~~g~-Lyigs~~~~~i~~~~~~~~~~~~  391 (393)
                      ++.+ ||+.+...+.|..+|+.....++
T Consensus       328 DG~~~l~vt~~~d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         328 DGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            4444 67777777889999987766554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=8.7e-05  Score=67.00  Aligned_cols=247  Identities=9%  Similarity=0.009  Sum_probs=127.1

Q ss_pred             CCceEEEecCCCEEEEEecCCe-EEEEEcCCCCCcceeeeee-cCCCceeeeEECC--CCCCCCceEEEEEeCCCc-eEE
Q 016199           84 GPEDLLYDAHSKLIYTGCEDGW-IKRVTLNDSPADSLVHNWI-NTGGRPLGIAFAN--SDPDADRITMIVADAYKG-LLK  158 (393)
Q Consensus        84 ~Pe~ia~d~~g~~L~~~~~~g~-I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~--~G~~~~~~~L~v~~~~~g-l~~  158 (393)
                      .|.+++++++|+.|-+++.+.. |..++........ ...+. +.......++|.|  +|      +++++....| |..
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~-~~~~~gh~~~~v~~v~fsP~~~g------~~lasgs~Dg~i~i   91 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPP-VVQFTGHGSSVVTTVKFSPIKGS------QYLCSGDESGKVIV   91 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCS-EEEECTTTTSCEEEEEECSSTTC------CEEEEEETTSEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccc-eEEEeCCCCCCEEEEEEeeCCCC------CEEEEEeCCCCEEE
Confidence            4667899999987765654433 3333322222111 22222 1223467899975  55      5554333444 544


Q ss_pred             EeCCc---eEEEe----eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-E
Q 016199          159 ISGNS---TVLLT----DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-L  230 (393)
Q Consensus       159 id~~g---~~~l~----~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~  230 (393)
                      ++...   ...+.    ..... ....+.++++.++|..+++-+.               ...+.+..++.++++... +
T Consensus        92 Wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~  155 (325)
T d1pgua1          92 WGWTFDKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGE---------------GRDNFGVFISWDSGNSLGEV  155 (325)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEEC---------------CSSCSEEEEETTTCCEEEEC
T ss_pred             eeecCCcceeeeeccccccccc-ccCcEEEEEECCCCCccceeec---------------cccceEEEEeecccccceee
Confidence            55321   11110    11111 1123567889999965554211               112235555555554333 3


Q ss_pred             ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCeEEECCC-CCEEEEEecCcchhhh
Q 016199          231 VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE--TLPGLPDNIRYDGE-GHYLIALATEFSTYWD  307 (393)
Q Consensus       231 ~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~--~l~g~P~~i~~d~~-G~lwva~~~~r~~~~~  307 (393)
                      ...-...+.+++++++..++++...++.+..|+....+  ....+..  ...+....++++++ |.+.++....      
T Consensus       156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d------  227 (325)
T d1pgua1         156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD------  227 (325)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT------
T ss_pred             eecccccccccccccccceEEEeecccccccccccccc--cceecccccCCCCccEEeeeccccceeccccccc------
Confidence            22234457799999988777777778889888864221  1111111  11223355778886 4565544432      


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--CCccEE-EEEeC-CEEEEEecCCCeEEEE
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--MSLISS-AIKIG-DHLYCGSVHHRGILHL  382 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--~~~~~~-~~~~~-g~Lyigs~~~~~i~~~  382 (393)
                                                  +.|..+|. +++.+..+....  .....+ ....+ .+|..++ .+..|...
T Consensus       228 ----------------------------~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iw  278 (325)
T d1pgua1         228 ----------------------------RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVW  278 (325)
T ss_dssp             ----------------------------CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEE
T ss_pred             ----------------------------cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEEE
Confidence                                        34667774 577777776433  222222 22234 4555554 55567777


Q ss_pred             eCCCCCCC
Q 016199          383 DVNQHPAR  390 (393)
Q Consensus       383 ~~~~~~~~  390 (393)
                      |+...+.+
T Consensus       279 d~~~~~~~  286 (325)
T d1pgua1         279 DVTTSKCV  286 (325)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCCEE
Confidence            77655443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=0.00043  Score=62.19  Aligned_cols=238  Identities=12%  Similarity=0.074  Sum_probs=129.2

Q ss_pred             CceEEEec--CCCEEEEEecCCeEEEEEcCCCCCcceee-----eeecCCCceeeeEECCCCCCCCceEEEEEeCC-C-c
Q 016199           85 PEDLLYDA--HSKLIYTGCEDGWIKRVTLNDSPADSLVH-----NWINTGGRPLGIAFANSDPDADRITMIVADAY-K-G  155 (393)
Q Consensus        85 Pe~ia~d~--~g~~L~~~~~~g~I~~~~~~~~~~~~~~~-----~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~-g  155 (393)
                      -.+++|.|  +|+.|..|+.||.|..|+...+......+     .+....+....+++.++|     +.|.++..+ . -
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~~~~~~  140 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-----RRLCVVGEGRDNF  140 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-----SEEEEEECCSSCS
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-----Cccceeeccccce
Confidence            44688876  56677788889999888775432110011     112223456789999998     244444332 2 2


Q ss_pred             eEEEeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-
Q 016199          156 LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-  233 (393)
Q Consensus       156 l~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-  233 (393)
                      +..++.+..+.+. ...+. ...+..+++.+++. +.++.                 ...+.+..||..+.+...-... 
T Consensus       141 ~~~~~~~~~~~~~-~~~~h-~~~v~~~~~~~~~~~~~~~~-----------------~~d~~v~~~d~~~~~~~~~~~~~  201 (325)
T d1pgua1         141 GVFISWDSGNSLG-EVSGH-SQRINACHLKQSRPMRSMTV-----------------GDDGSVVFYQGPPFKFSASDRTH  201 (325)
T ss_dssp             EEEEETTTCCEEE-ECCSC-SSCEEEEEECSSSSCEEEEE-----------------ETTTEEEEEETTTBEEEEEECSS
T ss_pred             EEEEeecccccce-eeeec-ccccccccccccccceEEEe-----------------ecccccccccccccccceecccc
Confidence            4444443311111 11121 12356788988874 44432                 2346788888766554433222 


Q ss_pred             ---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC---CCCCEEEEEecCcchhhh
Q 016199          234 ---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD---GEGHYLIALATEFSTYWD  307 (393)
Q Consensus       234 ---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d---~~G~lwva~~~~r~~~~~  307 (393)
                         ......++++||+..++++....+.|..|++...+  ....+. .......++.+.   ++|+++++....      
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D------  272 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIE-DDQEPVQGGIFALSWLDSQKFATVGAD------  272 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECC-BTTBCCCSCEEEEEESSSSEEEEEETT------
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeecccc--cccccc-ccccccccceeeeeccCCCEEEEEeCC------
Confidence               23357789999866677777778899999874221  112221 111112233332   678877665533      


Q ss_pred             hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--C--CccEEEEEeCCEEEEEecCCCeEEEE
Q 016199          308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--M--SLISSAIKIGDHLYCGSVHHRGILHL  382 (393)
Q Consensus       308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--~--~~~~~~~~~~g~Lyigs~~~~~i~~~  382 (393)
                                                  +.|..+|. +++.+..+....  .  .........+++|.-++. +..|..+
T Consensus       273 ----------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~vw  323 (325)
T d1pgua1         273 ----------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFY  323 (325)
T ss_dssp             ----------------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEE
T ss_pred             ----------------------------CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC-CCEEEEE
Confidence                                        34666675 577777765433  1  122233344567766653 4567666


Q ss_pred             eC
Q 016199          383 DV  384 (393)
Q Consensus       383 ~~  384 (393)
                      |+
T Consensus       324 dl  325 (325)
T d1pgua1         324 EL  325 (325)
T ss_dssp             ET
T ss_pred             EC
Confidence            54

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.29  E-value=0.0001  Score=67.13  Aligned_cols=188  Identities=9%  Similarity=0.003  Sum_probs=104.6

Q ss_pred             CCCceEEEecCCCEEEEE-ecCCeEEEEEcCCCCCcceeeeee-----cCCCc--eeeeEECCCCCCCCceEEEEEeCCC
Q 016199           83 KGPEDLLYDAHSKLIYTG-CEDGWIKRVTLNDSPADSLVHNWI-----NTGGR--PLGIAFANSDPDADRITMIVADAYK  154 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~-~~~g~I~~~~~~~~~~~~~~~~~~-----~~~~~--p~gl~~d~~G~~~~~~~L~v~~~~~  154 (393)
                      ..|.++++.++|+.+|+. ..++.+..++.....    .....     .....  +..+..+.++      .+.......
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  234 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA----AGAGLVGAMLTAAQNLLTQPAQANKSG------RIVWPVYSG  234 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce----eeEEEeeeccccCccceeeeEEECCCc------eEEEecCCc
Confidence            567788899988877654 458888888876654    22111     11112  3345555555      443333344


Q ss_pred             ceEEEeCCc--eEEEee---ccC-----CccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199          155 GLLKISGNS--TVLLTD---EAE-----GQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV  223 (393)
Q Consensus       155 gl~~id~~g--~~~l~~---~~~-----g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~  223 (393)
                      .++.++..+  ......   ...     .........+++.++| .+|+.......        +......+.+..+|..
T Consensus       235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~v~~~d~~  306 (373)
T d2madh_         235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA--------WKLHAAAKEVTSVTGL  306 (373)
T ss_pred             eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce--------EEeecCCCeEEEEECC
Confidence            566665443  111110   000     0000112345677776 34444211110        0111334578889988


Q ss_pred             CCeEEEEecCccCCCcEEEcCCCCE-EEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCC
Q 016199          224 TKETKVLVSDLYFANGVVLSPDQTH-LVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE  291 (393)
Q Consensus       224 t~~~~~~~~~l~~~ngi~~s~dg~~-l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~  291 (393)
                      +++.......-..+.++++++||+. +|++....+.|..||...   ++...-++.....|..+++..+
T Consensus       307 t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t---g~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         307 VGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA---GDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC---CCEEEEECCCCCCCcEEEEecC
Confidence            8765544444456889999999986 577888889999999853   3322233334456888888654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.21  E-value=6.7e-05  Score=69.03  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=86.9

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCC-------------CceEEEeCCc----eEEEee---ccCCccccccccEEE--cC
Q 016199          129 RPLGIAFANSDPDADRITMIVADAY-------------KGLLKISGNS----TVLLTD---EAEGQKFKLTDGVDV--AD  186 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~-------------~gl~~id~~g----~~~l~~---~~~g~~~~~~~~l~~--d~  186 (393)
                      +|..|+.+++|      .+|++...             +.|+.+|.+.    ...+..   ...+..+ .|+||.+  +.
T Consensus        36 G~EDi~~~~dg------~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f-~PhGi~l~~~~  108 (340)
T d1v04a_          36 GSEDLEILPNG------LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSF-NPHGISTFIDD  108 (340)
T ss_dssp             CCCEEEECTTS------EEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGC-CEEEEEEEECT
T ss_pred             CcceEEECCCC------cEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcce-eccceeEEEcC
Confidence            57788888888      77777531             3366666433    122211   1111122 4788754  56


Q ss_pred             CCc--EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe----cCccCCCcEEEcCCCCEEEEEeCC-----
Q 016199          187 DGM--IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV----SDLYFANGVVLSPDQTHLVYCETS-----  255 (393)
Q Consensus       187 dG~--l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~----~~l~~~ngi~~s~dg~~l~v~~~~-----  255 (393)
                      +|.  ||+.+-..             ...+-.++.++.++++++...    ..+..||.|++..+| .+|+++..     
T Consensus       109 dg~~~L~vvnH~~-------------~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~  174 (340)
T d1v04a_         109 DNTVYLLVVNHPG-------------SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDP  174 (340)
T ss_dssp             TCCEEEEEEECST-------------TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSH
T ss_pred             CCcEEEEEEeccC-------------CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcCh
Confidence            774  56654210             122345788887766655431    236789999999988 68888632     


Q ss_pred             ------------CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecC
Q 016199          256 ------------MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATE  301 (393)
Q Consensus       256 ------------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~  301 (393)
                                  .+.++.|+  ++   ..++.++++. +|+||++++|++ +||+....
T Consensus       175 ~~~~~e~~~~~~~g~v~~~~--~~---~~~~~~~~l~-~pNGI~~s~d~~~lyVa~t~~  227 (340)
T d1v04a_         175 YLKSWEMHLGLAWSFVTYYS--PN---DVRVVAEGFD-FANGINISPDGKYVYIAELLA  227 (340)
T ss_dssp             HHHHHHHHTTCCCEEEEEEC--SS---CEEEEEEEES-SEEEEEECTTSSEEEEEEGGG
T ss_pred             hhhhhhHhhcCCceeEEEEc--CC---ceEEEcCCCC-ccceeEECCCCCEEEEEeCCC
Confidence                        23444444  22   3445555555 799999999987 78887643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.20  E-value=7.1e-05  Score=68.80  Aligned_cols=186  Identities=11%  Similarity=-0.003  Sum_probs=105.5

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee---ecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE-
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW---INTGGRPLGIAFANSDPDADRITMIVADAYKGLLK-  158 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~---~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~-  158 (393)
                      ..-.+++|+|+++.|.+++.|+.|..|+.+++.    .+..   .........++++++|     +.|+++...+-+.. 
T Consensus        52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~----~~~~~~~~~~~~~v~~i~~~p~~-----~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----WKPTLVILRINRAARCVRWAPNE-----KKFAVGSGSRVISIC  122 (371)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTE----EEEEEECCCCSSCEEEEEECTTS-----SEEEEEETTSSEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEeecccc----ccccccccccccccccccccccc-----ccceeecccCcceee
Confidence            345779999999988888899999999987654    2222   1223457899999998     24556644443333 


Q ss_pred             -EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe----------
Q 016199          159 -ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE----------  226 (393)
Q Consensus       159 -id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~----------  226 (393)
                       ++... .........+. ...+..++++|+|.++++-                 ...+.+..|+...+.          
T Consensus       123 ~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~l~s~-----------------s~D~~v~v~~~~~~~~~~~~~~~~~  184 (371)
T d1k8kc_         123 YFEQENDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAG-----------------SCDFKCRIFSAYIKEVEERPAPTPW  184 (371)
T ss_dssp             EEETTTTEEEEEEECTTC-CSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             eeeccccccccccccccc-ccccccccccccccceecc-----------------ccCcEEEEEeeccCccccccccccc
Confidence             33332 22222111111 1235578899999776652                 123345555543221          


Q ss_pred             --------E-EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199          227 --------T-KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA  297 (393)
Q Consensus       227 --------~-~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva  297 (393)
                              . ..........+++++++||+.++.+ +..+.|..|++...+  ....+. ....--..+++.++|.+.++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~d~~i~iwd~~~~~--~~~~~~-~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEE
T ss_pred             cccccceeeeeeccCccCcEEEEEeeccccccccc-ccCCcceEEeeeccc--ceeeee-cccccceeeeecCCCCEEEE
Confidence                    1 1111122345788999999876554 457899999985321  122222 11111245677777776655


Q ss_pred             Ee
Q 016199          298 LA  299 (393)
Q Consensus       298 ~~  299 (393)
                      ..
T Consensus       261 g~  262 (371)
T d1k8kc_         261 GH  262 (371)
T ss_dssp             ET
T ss_pred             Ec
Confidence            43

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=8.1e-05  Score=68.34  Aligned_cols=197  Identities=8%  Similarity=-0.074  Sum_probs=108.1

Q ss_pred             CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCce--------eeeEECCCCCCCCceEEEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRP--------LGIAFANSDPDADRITMIVADAY  153 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p--------~gl~~d~~G~~~~~~~L~v~~~~  153 (393)
                      ..|.++++++||++||++.. ++.+..++..+++    ..........+        ..+++.++|      .       
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~Dg------~-------  186 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS----DDQLTKSASCFHIHPGAAATHYLGSCPA------S-------  186 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE----EEEEEECSSCCCCEEEETTEEECCCCTT------S-------
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCc----EeEEeeccCcceEccCCCceEEEEcCCC------C-------
Confidence            46889999999999998875 6789999988765    33222221111        223333344      2       


Q ss_pred             CceEEEeCC--c-eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199          154 KGLLKISGN--S-TVLLT-DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV  229 (393)
Q Consensus       154 ~gl~~id~~--g-~~~l~-~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~  229 (393)
                        +..++..  + ..... ..........+.....+++|.++++.                   .++++.++...+....
T Consensus       187 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------~~~v~~~~~~~~~~~~  245 (368)
T d1mdah_         187 --LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-------------------ASSILQGDIPAAGATM  245 (368)
T ss_dssp             --CEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-------------------SSCCEEEECCSSCCEE
T ss_pred             --EEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-------------------CCCEEEEeecCCceEE
Confidence              3333221  1 11110 00000111223455666676555542                   2345555554444333


Q ss_pred             Eec-----------C--ccCCCcEEEcCCCCEEEEEeCCC--------CeEEEEEecCCCCcceeeeeccCCCCCCeEEE
Q 016199          230 LVS-----------D--LYFANGVVLSPDQTHLVYCETSM--------RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRY  288 (393)
Q Consensus       230 ~~~-----------~--l~~~ngi~~s~dg~~l~v~~~~~--------~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~  288 (393)
                      +..           .  -..+..++++++++.+|+.....        .+|+.+|.+..+   ..... .....|.++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~-~~~~~~~~~a~  321 (368)
T d1mdah_         246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPI-SNGHDSDAIIA  321 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEECC-EEEEEECEEEE
T ss_pred             EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc---EeEEe-cCCCceeEEEE
Confidence            211           0  01245689999999998875332        368888875332   11111 12245788999


Q ss_pred             CCCCC--EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC
Q 016199          289 DGEGH--YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE  355 (393)
Q Consensus       289 d~~G~--lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~  355 (393)
                      ++||+  +|++....                                  +.|..+|. .|+.+..+..+.
T Consensus       322 spDG~~~ly~s~~~~----------------------------------~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         322 AQDGASDNYANSAGT----------------------------------EVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             CCSSSCEEEEEETTT----------------------------------TEEEEEESSSCEEEEECCCCS
T ss_pred             CCCCCEEEEEEeCCC----------------------------------CeEEEEECCCCCEEEEEECCC
Confidence            99996  45554432                                  45888886 688888887544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=1.9e-05  Score=72.80  Aligned_cols=68  Identities=7%  Similarity=-0.129  Sum_probs=48.7

Q ss_pred             eEEEecCCCEEEEEec----------CCeEEEEEcCCCCCcceeee-ee-------cCCCceeeeEECCCCCCCCceEEE
Q 016199           87 DLLYDAHSKLIYTGCE----------DGWIKRVTLNDSPADSLVHN-WI-------NTGGRPLGIAFANSDPDADRITMI  148 (393)
Q Consensus        87 ~ia~d~~g~~L~~~~~----------~g~I~~~~~~~~~~~~~~~~-~~-------~~~~~p~gl~~d~~G~~~~~~~L~  148 (393)
                      .+++.+||+.||+.+.          ++.|..||..+.+    ... +.       ..+..|.++++.+||     +.||
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~----~~~~i~~p~~~~~~~g~~p~~~a~SpDG-----k~l~  139 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL----PIADIELPDAPRFSVGPRVHIIGNCASS-----ACLL  139 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----EEEEEEETTSCSCCBSCCTTSEEECTTS-----SCEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc----EeeeecCCccceecccCCccceEECCCC-----CEEE
Confidence            6899999999998653          4568999887764    222 21       124468899999999     3688


Q ss_pred             EEeCC-CceEEEeCCc
Q 016199          149 VADAY-KGLLKISGNS  163 (393)
Q Consensus       149 v~~~~-~gl~~id~~g  163 (393)
                      +++.. +.+..+|..+
T Consensus       140 va~~~~~~v~~~d~~~  155 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             EEECSSSCEEEEEETT
T ss_pred             EEeCCCCeEEEEECCC
Confidence            98754 4577888765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=0.0015  Score=57.42  Aligned_cols=65  Identities=9%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             EecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           90 YDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        90 ~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      ++.+|+.|.+|+.||.|..|+..+++   ....+....+...++++.+++      .|+.+..++.|..++...
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~l~~s~~~------~l~s~s~D~~i~iw~~~~   83 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG------ILVSGSTDRTVRVWDIKK   83 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTE---EEEEEECCSSCEEEEEEETTT------EEEEEETTCCEEEEETTT
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCc---EEEEEECCCCCEEEEEEcCCC------EEEEEecccccccccccc
Confidence            45567789999999999999987654   234444345667899998888      777776666676677554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.10  E-value=0.0006  Score=61.11  Aligned_cols=200  Identities=14%  Similarity=0.034  Sum_probs=106.0

Q ss_pred             CCCceEEEecCCCEEEEEec--CCeEEEEEcCCCCCcceeeeeecCC--------CceeeeEECCCCCCCCceEEEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCE--DGWIKRVTLNDSPADSLVHNWINTG--------GRPLGIAFANSDPDADRITMIVADA  152 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~--------~~p~gl~~d~~G~~~~~~~L~v~~~  152 (393)
                      ..|..++++++|+.+++...  +..+..++..++.   ....+ ...        +....+++.++|     ..+++...
T Consensus       106 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~dg-----~~~~v~~~  176 (355)
T d2bbkh_         106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA---FKRML-DVPDCYHIFPTAPDTFFMHCRDG-----SLAKVAFG  176 (355)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE---EEEEE-ECCSEEEEEEEETTEEEEEETTS-----CEEEEECC
T ss_pred             CCCceEEEecCCCeeEEecCCCCceeeeeecCCCc---EeeEE-ecCCcceEeecCCcceEEEcCCC-----CEEEEEec
Confidence            45888999999998888764  3456667766543   12222 111        122334555555     13444322


Q ss_pred             CCc-eEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199          153 YKG-LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL  230 (393)
Q Consensus       153 ~~g-l~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~  230 (393)
                      ..+ +..++...       ...............+++ .+.++                  ...+.++.++..+++...+
T Consensus       177 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~  231 (355)
T d2bbkh_         177 TEGTPEITHTEV-------FHPEDEFLINHPAYSQKAGRLVWP------------------TYTGKIHQIDLSSGDAKFL  231 (355)
T ss_dssp             SSSCCEEEECCC-------CSCTTSCBCSCCEEETTTTEEEEE------------------BTTSEEEEEECTTSSCEEC
T ss_pred             CCCeEEEEeccc-------ccceecceeeeccccCCCCeEEEe------------------cCCCeEEEEecCCCcEEEE
Confidence            221 22222111       000001112223334433 44444                  2345677777666654433


Q ss_pred             ecC-------------ccCCCcEEEcCCCCEEEEEeCCC---------CeEEEEEecCCCCcceeeeeccCCCCCCeEEE
Q 016199          231 VSD-------------LYFANGVVLSPDQTHLVYCETSM---------RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRY  288 (393)
Q Consensus       231 ~~~-------------l~~~ngi~~s~dg~~l~v~~~~~---------~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~  288 (393)
                      ...             -.....+++++|+..+|+.....         ..|..++....+  ....+.  ....|.++++
T Consensus       232 ~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--~~~~~~--~~~~~~~~a~  307 (355)
T d2bbkh_         232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--RLAKFE--MGHEIDSINV  307 (355)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEE--EEEEECEEEE
T ss_pred             eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc--EEEEec--CCCCEEEEEE
Confidence            110             01235689999999998876432         367888865322  111111  2235788999


Q ss_pred             CCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeC
Q 016199          289 DGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYD  353 (393)
Q Consensus       289 d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d  353 (393)
                      ++||+ +++++....                                 +.|..+|. +|++++.+..
T Consensus       308 spDG~~~l~v~~~~d---------------------------------~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         308 SQDEKPLLYALSTGD---------------------------------KTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             CCSSSCEEEEEETTT---------------------------------TEEEEEETTTCCEEEEECC
T ss_pred             cCCCCeEEEEEECCC---------------------------------CEEEEEECCCCCEEEEEeC
Confidence            99997 444443221                                 46888886 7899888864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.09  E-value=0.0024  Score=55.97  Aligned_cols=227  Identities=10%  Similarity=0.069  Sum_probs=121.1

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc-eeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS-LVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~-~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      ....+++++++++.+++++.++.+..++........ ....+..............+.      .+..............
T Consensus        98 ~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  171 (340)
T d1tbga_          98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN------QIVTSSGDTTCALWDI  171 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT------EEEEEETTTEEEEEET
T ss_pred             ccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccc------cccccccccccccccc
Confidence            345678999999988899999988888765432110 011111111122223333334      4544443333333333


Q ss_pred             Cc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCc
Q 016199          162 NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANG  239 (393)
Q Consensus       162 ~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ng  239 (393)
                      .. ..........   ..+......+.+.++++.                 ...+.+..||..+++...... .....+.
T Consensus       172 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----------------~~d~~v~i~d~~~~~~~~~~~~h~~~i~~  231 (340)
T d1tbga_         172 ETGQQTTTFTGHT---GDVMSLSLAPDTRLFVSG-----------------ACDASAKLWDVREGMCRQTFTGHESDINA  231 (340)
T ss_dssp             TTTEEEEEEECCS---SCEEEEEECTTSSEEEEE-----------------ETTTEEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ccccccccccccc---eeEeeeccccccceeEEe-----------------ecCceEEEEECCCCcEEEEEeCCCCCeEE
Confidence            22 1111111111   112344555666666653                 345678889987776544333 2345678


Q ss_pred             EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhh
Q 016199          240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE-TLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKV  318 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~  318 (393)
                      ++++|+++.++. .+..+.|..|++....  ....+.. ........++++++|++.++....                 
T Consensus       232 v~~~p~~~~l~s-~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------------  291 (340)
T d1tbga_         232 ICFFPNGNAFAT-GSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------------  291 (340)
T ss_dssp             EEECTTSSEEEE-EETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECSSSCEEEEEETT-----------------
T ss_pred             EEECCCCCEEEE-EeCCCeEEEEeecccc--cccccccccccCceEEEEECCCCCEEEEEECC-----------------
Confidence            999999976544 5567889999875321  1222211 111112457789999977765533                 


Q ss_pred             hhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEE-EeC-CEEEEEe
Q 016199          319 SGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAI-KIG-DHLYCGS  373 (393)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~-~~~-g~Lyigs  373 (393)
                                       +.|..+|. +++.+..+..... .++.+. ..+ ..|..|+
T Consensus       292 -----------------g~i~iwd~~~~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s  331 (340)
T d1tbga_         292 -----------------FNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             -----------------SCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEE
T ss_pred             -----------------CEEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEc
Confidence                             44777774 6777777764332 233332 233 4565555

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.01  E-value=3e-05  Score=73.67  Aligned_cols=181  Identities=13%  Similarity=-0.031  Sum_probs=105.7

Q ss_pred             cCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe--cCccCCCcEEEcCCCCEEEEEeCCCCeEE-
Q 016199          185 ADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV--SDLYFANGVVLSPDQTHLVYCETSMRRCR-  260 (393)
Q Consensus       185 d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~--~~l~~~ngi~~s~dg~~l~v~~~~~~ri~-  260 (393)
                      .+|| .+|++|                 ..+.+|-++|.++.+.....  .....|+|+++++||++.||.+....++. 
T Consensus        80 tpDGr~lfV~d-----------------~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          80 RYDGKYLFIND-----------------KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             EEEEEEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             cCCCCEEEEEc-----------------CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            4688 688987                 45679999999998765543  23567999999999999999876655442 


Q ss_pred             -----------------EEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhh-hhh
Q 016199          261 -----------------KFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKV-SGM  321 (393)
Q Consensus       261 -----------------~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~-~~~  321 (393)
                                       .++...   ......+ ..++.|.++.++++|+ +|+++...........+.......+ +..
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t---~~v~~qI-~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n  218 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAET---MDVAWQV-IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN  218 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTT---CSEEEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE
T ss_pred             cCcccccccccccceEEeecCcc---ceeeEEE-ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC
Confidence                             233221   1111111 1345789999999999 5555544332211111111111111 111


Q ss_pred             hhhhh----CCCCCCCCCceEEEEC--CCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          322 VVRYL----GMPPMGKSSSGVFIVD--LDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       322 ~~~~~----~~~~~~~~~~~v~~~d--~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                      .|...    .++.......++..++  .+.++++.+..+..+....+.+++.++|+++..++.+..+|+++
T Consensus       219 ~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         219 VERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             HHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             ccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            11110    1122222223444444  23456777766654444455677789999999999999999765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.99  E-value=0.00013  Score=69.73  Aligned_cols=109  Identities=14%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC---ccCC------CcEEEcCC-
Q 016199          176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD---LYFA------NGVVLSPD-  245 (393)
Q Consensus       176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~---l~~~------ngi~~s~d-  245 (393)
                      +..|.+|++.+||+|||+.                 ...|+|+++++++++.+.+..-   ....      -||+++|| 
T Consensus        26 L~~P~~la~~pdg~llVte-----------------r~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTE-----------------RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEE-----------------TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCceEEEEeCCCeEEEEE-----------------ecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            3567899999999999995                 3468899999888877665431   1112      35999886 


Q ss_pred             --CCEEEEEeCC------------CCeEEEEEecCCC--CcceeeeeccCCCC----CCeEEECCCCCEEEEEecC
Q 016199          246 --QTHLVYCETS------------MRRCRKFYIKGKN--AGRVEKFIETLPGL----PDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       246 --g~~l~v~~~~------------~~ri~~~~~~g~~--~~~~~~~~~~l~g~----P~~i~~d~~G~lwva~~~~  301 (393)
                        ...+|++.+.            ...+.++..+...  ....+.+...++..    -..|++++||.+|++....
T Consensus        89 ~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~  164 (450)
T d1crua_          89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (450)
T ss_dssp             TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             ccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCC
Confidence              4588987541            1245666665432  22223333333321    2358999999999988754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=0.0069  Score=51.86  Aligned_cols=222  Identities=11%  Similarity=0.129  Sum_probs=117.6

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN  162 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~  162 (393)
                      ....++++++++..+..+..++.+..++.....   ....+.........+.+.+++     +.+..+...+.+..++..
T Consensus        60 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~  131 (317)
T d1vyhc1          60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFE---CIRTMHGHDHNVSSVSIMPNG-----DHIVSASRDKTIKMWEVQ  131 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSC---EEECCCCCSSCEEEEEECSSS-----SEEEEEETTSEEEEEETT
T ss_pred             CcEEEEeeecccccccccccccccccccccccc---cccccccccccceeeeccCCC-----ceEEeeccCcceeEeecc
Confidence            445678899999877777777777777665433   011122223445678888887     145555444445566654


Q ss_pred             c---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-ccCCC
Q 016199          163 S---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LYFAN  238 (393)
Q Consensus       163 g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~~~n  238 (393)
                      .   ...+.    +. ...+..++++++|.++++-                 ...+.+..++..+++....... .....
T Consensus       132 ~~~~~~~~~----~~-~~~~~~~~~~~~~~~l~~~-----------------~~d~~v~~~~~~~~~~~~~~~~~~~~i~  189 (317)
T d1vyhc1         132 TGYCVKTFT----GH-REWVRMVRPNQDGTLIASC-----------------SNDQTVRVWVVATKECKAELREHRHVVE  189 (317)
T ss_dssp             TCCEEEEEE----CC-SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             cceeeeEEc----cC-CCcceeeecccCCCEEEEE-----------------eCCCeEEEEeeccceeeEEEecCCCCce
Confidence            3   22221    11 1234567888888776653                 2234566666655443322211 11112


Q ss_pred             cEEE--------------------cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEE
Q 016199          239 GVVL--------------------SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIAL  298 (393)
Q Consensus       239 gi~~--------------------s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~  298 (393)
                      .+++                    ..++. ++++.+..+.|..|++...+  ....+. ........+++.++|++.++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         190 CISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             EEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEE
T ss_pred             EEEEeeccccceeeccccceeeeeccCCc-eeEeccCCCEEEEEECCCCc--EEEEEe-CCCCCEEEEEECCCCCEEEEE
Confidence            2222                    23333 44555567888888875321  112222 222234567889999877665


Q ss_pred             ecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEE-E-eCCEEEEEe
Q 016199          299 ATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAI-K-IGDHLYCGS  373 (393)
Q Consensus       299 ~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~-~-~~g~Lyigs  373 (393)
                      ...                                  +.|..+|. +++.+..+..... .++.+. . ++..|..|+
T Consensus       266 ~~d----------------------------------g~i~iwd~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         266 ADD----------------------------------KTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             ETT----------------------------------TEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEEEEE
T ss_pred             ECC----------------------------------CeEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEe
Confidence            433                                  45777775 5777877764332 233332 2 334566654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.81  E-value=0.0011  Score=61.60  Aligned_cols=210  Identities=14%  Similarity=0.121  Sum_probs=119.5

Q ss_pred             ecCccCCCceEEEec---CCCEEEEEec-CCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEe
Q 016199           78 GYGVLKGPEDLLYDA---HSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVAD  151 (393)
Q Consensus        78 ~~g~~~~Pe~ia~d~---~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~  151 (393)
                      .-|...-| .+.+..   ||+.||+... +.||.++++++.+    ...+.  +....++|++...++     +..||..
T Consensus        81 ~~GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fk----t~kIi~iPn~~~~HG~r~~~~p-----~T~YV~~  150 (459)
T d1fwxa2          81 DNGDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMK----CDAILEIPNAKGIHGLRPQKWP-----RSNYVFC  150 (459)
T ss_dssp             CCCCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTE----EEEEEECSSCCSEEEEEECCSS-----BCSEEEE
T ss_pred             cCCCcCCC-cccccCCccceeEEEEEcCCCceEEEEECccee----eeEEEecCCCCCCceeecccCC-----CeEEEEc
Confidence            35667777 666666   7999999886 7899999998865    43332  335678999887655     2455553


Q ss_pred             C-CC------------------c-eEEEeCCceEEEee-ccCCccccccccEEEcCCCc-EEEEeCCCccc--h------
Q 016199          152 A-YK------------------G-LLKISGNSTVLLTD-EAEGQKFKLTDGVDVADDGM-IYFTDASNKYY--L------  201 (393)
Q Consensus       152 ~-~~------------------g-l~~id~~g~~~l~~-~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~--~------  201 (393)
                      . ..                  + +..+|.+..++... ...    ..+.++.+++||. +|+++.-+...  .      
T Consensus       151 ~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~----g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~  226 (459)
T d1fwxa2         151 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAA  226 (459)
T ss_dssp             EECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCC
T ss_pred             cCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC----CChhccccCCCCCEEEEEeccccCCcchhhcccc
Confidence            2 21                  1 23456555211111 112    2366889999995 55554322211  0      


Q ss_pred             -hhhee---------hhcccC--CCcEEEEEeCCCC---eEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199          202 -REYIL---------DIFEGK--PNGRLLSFDPVTK---ETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG  266 (393)
Q Consensus       202 -~~~~~---------~~~e~~--~~g~l~~~d~~t~---~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g  266 (393)
                       .+|+.         .+-.+.  ..+++-..|....   .+..+..--..|+|+.++|||+++|+++.....+..++++.
T Consensus       227 e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         227 EMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             SEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             cceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence             01100         000000  0123445554321   12222222346999999999999999999999999999852


Q ss_pred             C------CCcceeee-ec-cCCCCCCeEEECCCCCEEEEEecC
Q 016199          267 K------NAGRVEKF-IE-TLPGLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       267 ~------~~~~~~~~-~~-~l~g~P~~i~~d~~G~lwva~~~~  301 (393)
                      -      +....... .+ .+.--|---++|.+|+.|.++.-.
T Consensus       307 i~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfid  349 (459)
T d1fwxa2         307 FDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD  349 (459)
T ss_dssp             HHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTT
T ss_pred             hhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeecc
Confidence            1      11001111 11 111226667899999999998754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.74  E-value=0.0085  Score=51.32  Aligned_cols=95  Identities=15%  Similarity=0.036  Sum_probs=55.4

Q ss_pred             EecC--CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCC-----CceEEEeC
Q 016199           90 YDAH--SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAY-----KGLLKISG  161 (393)
Q Consensus        90 ~d~~--g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~-----~gl~~id~  161 (393)
                      ..|+  |+.+.+. .+|.|+.++.+++.    .+.+....+...+.++.+||     +.|... ...     ..|+.++.
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~----~~~Lt~~~~~~~~p~~SPDG-----~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGS----TRKIVSNLGVINNARFFPDG-----RKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCC----EEEEECSSSEEEEEEECTTS-----SEEEEEEEESTTCCEEEEEEEET
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCC----EEEEecCCCcccCEEECCCC-----CEEEEEEeeCCCCCceEEEEEEe
Confidence            4566  7755433 45679999988876    66665544566788999999     245433 221     13778887


Q ss_pred             Cc--eEEEeeccCC--ccccccccEEEcCCCc-EEEEe
Q 016199          162 NS--TVLLTDEAEG--QKFKLTDGVDVADDGM-IYFTD  194 (393)
Q Consensus       162 ~g--~~~l~~~~~g--~~~~~~~~l~~d~dG~-l~~td  194 (393)
                      ++  .+.+......  ..........+.+||+ |+++.
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            66  3444321111  1112345677889994 66654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=0.022  Score=49.00  Aligned_cols=74  Identities=12%  Similarity=0.054  Sum_probs=45.3

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEE-EEEeCCCceEEEeCCc
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITM-IVADAYKGLLKISGNS  163 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L-~v~~~~~gl~~id~~g  163 (393)
                      -.+|+|+|+++.|.+++.||.|..|+.+.+.............+....+++.+++.     .+ ..|...+-+..++...
T Consensus        14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~-----~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_          14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD-----LQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS-----EEEEEEETTSCEEEECSSS
T ss_pred             EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCC-----CEEEEcccccceeeeeccc
Confidence            35699999999999999999999888765431111111112245578888876530     44 4444344466666543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=0.014  Score=50.03  Aligned_cols=182  Identities=10%  Similarity=0.012  Sum_probs=96.3

Q ss_pred             CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeC
Q 016199           83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISG  161 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~  161 (393)
                      ..|..+++.+++. +++...++.+..++...+.    ...........  .++.+++     +.+.++....+ +..++.
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~-----~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          81 SQPKVASANNDGF-TAVLTNDDDLLILQSFTGD----IIKSVRLNSPG--SAVSLSQ-----NYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             SCEEEEEECSSSE-EEEEETTSEEEEEETTTCC----EEEEEECSSCE--EEEEECS-----SEEEEEETTTSCEEEEET
T ss_pred             cceeeeeeccCCc-eEEEeecccceeeecccee----eeeecccccee--eeeeccC-----cceeeeccccceeeeeec
Confidence            3577788888875 5566667778888876554    22222222222  3344444     15777765554 455565


Q ss_pred             CceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe--cCccCCCc
Q 016199          162 NSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV--SDLYFANG  239 (393)
Q Consensus       162 ~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~--~~l~~~ng  239 (393)
                      ........ ........+..++++++|...++.                 ...|.+..||..+++.....  ......+.
T Consensus       149 ~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~g-----------------~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~  210 (287)
T d1pgua2         149 SDLEVSFD-LKTPLRAKPSYISISPSETYIAAG-----------------DVMGKILLYDLQSREVKTSRWAFRTSKINA  210 (287)
T ss_dssp             TEEEEEEE-CSSCCSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEECCSCCCSSCEEE
T ss_pred             cccceeee-eeeccCCceeEEEeccCccccccc-----------------cccccccceeecccccccccccccccccce
Confidence            44111111 111111235688999999655442                 23567888998877654321  11223455


Q ss_pred             EEEcCCCC---------EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          240 VVLSPDQT---------HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       240 i~~s~dg~---------~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      ++++|++.         .++++.+..+.|..|+++..  ...........+....+++.+++.+.-
T Consensus       211 ~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~--~~~~~~~~~h~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             EEECCCC------CCSCCEEEEEETTSCEEEEESSCT--TCCEEETTSSTTCEEEEEEEETTEEEE
T ss_pred             eeecccccccccccCCCCeeEeecCCCeEEEEECCCC--CeEEEEeCCCCCCeEEEEECCCCEEEE
Confidence            66665432         35567777889999997532  111111112222235566677775443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.29  E-value=0.02  Score=53.46  Aligned_cols=53  Identities=8%  Similarity=0.021  Sum_probs=35.1

Q ss_pred             CCCceEEEecCCCEEEEEec---------CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCE---------DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSD  139 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~---------~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G  139 (393)
                      ....++.++|||+.|.+++.         .+.++.++.++++    ...+...........+.+||
T Consensus        62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~----~~~l~~~~~~~~~~~~SPDG  123 (470)
T d2bgra1          62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ----LITEERIPNNTQWVTWSPVG  123 (470)
T ss_dssp             SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----ECCSSCCCTTEEEEEECSST
T ss_pred             CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc----ccccccCCccccccccccCc
Confidence            34567899999997766542         3467788888775    44443334455666777777

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.043  Score=46.80  Aligned_cols=171  Identities=15%  Similarity=0.114  Sum_probs=95.3

Q ss_pred             cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199           79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK  158 (393)
Q Consensus        79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~  158 (393)
                      .|....-.++++++    |++|+.||.|..|+..+..        ........++++.+++      .++.+.. .+-.+
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~--------~~h~~~V~~~~~~~~~------~~~s~s~-D~~v~   70 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH--------QDHSNLIVSLDNSKAQ------EYSSISW-DDTLK   70 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE--------CCCCSCEEEEECCSTT------CCEEEET-TTEEE
T ss_pred             CCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC--------CCCCCCEEEEEecCCC------eEEEEee-ccccc
Confidence            44444445566653    8899999999998765421        1123456678887666      5555533 33333


Q ss_pred             E-eCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199          159 I-SGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA  237 (393)
Q Consensus       159 i-d~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~  237 (393)
                      + +...     ....    ..+..+...+++.+.+..                  ..+.+..++..+++.......  ..
T Consensus        71 ~w~~~~-----~~~~----~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--~~  121 (287)
T d1pgua2          71 VNGITK-----HEFG----SQPKVASANNDGFTAVLT------------------NDDDLLILQSFTGDIIKSVRL--NS  121 (287)
T ss_dssp             ETTEEE-----EECS----SCEEEEEECSSSEEEEEE------------------TTSEEEEEETTTCCEEEEEEC--SS
T ss_pred             cccccc-----cccc----cceeeeeeccCCceEEEe------------------ecccceeeeccceeeeeeccc--cc
Confidence            3 2111     0111    123356677788666653                  234577787766654433221  23


Q ss_pred             CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199          238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA  299 (393)
Q Consensus       238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~  299 (393)
                      ...+++++++.+.++....+.+..|++...+  ....+.....+....++++++|.+.++..
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  181 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPSETYIAAGD  181 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccccc--eeeeeeeccCCceeEEEeccCcccccccc
Confidence            4566778888888877766677777764221  11111111223345688999998665544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.065  Score=45.30  Aligned_cols=176  Identities=13%  Similarity=0.072  Sum_probs=90.5

Q ss_pred             eEEEecCCCEEE-EEecCC--eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc---eEEEe
Q 016199           87 DLLYDAHSKLIY-TGCEDG--WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG---LLKIS  160 (393)
Q Consensus        87 ~ia~d~~g~~L~-~~~~~g--~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g---l~~id  160 (393)
                      +.+|+|||+.|. +....+  .++.++.+++.    .+......+......++++|     +.+.+.....+   +....
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~spdg-----~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDG-----SKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCc----eeEEeeeecccccceecCCC-----CeeeEeeecCCccceeecc
Confidence            578999999774 443332  57777877665    55555555667788889988     23433322222   11221


Q ss_pred             CCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199          161 GNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG  239 (393)
Q Consensus       161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng  239 (393)
                      ........ ......  .........++ .++++..               ..+...++.++..++....+.........
T Consensus       114 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~g~~~i~~~~~~~~~~~~~~~~~~~~~~  175 (269)
T d2hqsa1         114 LASGQIRQ-VTDGRS--NNTEPTWFPDSQNLAFTSD---------------QAGRPQVYKVNINGGAPQRITWEGSQNQD  175 (269)
T ss_dssp             TTTCCEEE-CCCCSS--CEEEEEECTTSSEEEEEEC---------------TTSSCEEEEEETTSSCCEECCCSSSEEEE
T ss_pred             ccccccee-eeeccc--cccccccccccccceeccc---------------ccCCceEeeeecccccceeeecccccccc
Confidence            11111110 011100  01112334444 3333321               12234688998887766555444333455


Q ss_pred             EEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCE
Q 016199          240 VVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHY  294 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~l  294 (393)
                      ..+++|++.+++.....+  .++.++.++   +..+...  ..+.-...++++||+.
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~--~~~~~~~p~~SPDG~~  227 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVLS--STFLDETPSLAPNGTM  227 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTT---CCEEECC--CSSSCEEEEECTTSSE
T ss_pred             cccccccceeEEEeecCCceeeeEeeccc---ccceEee--cCccccceEECCCCCE
Confidence            678999998877665544  344444322   2222222  2222234678999983

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0076  Score=55.01  Aligned_cols=137  Identities=15%  Similarity=0.142  Sum_probs=85.9

Q ss_pred             CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee------cCCCceeeeEECCCCCCCCceEEEEEeCCC---c
Q 016199           85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI------NTGGRPLGIAFANSDPDADRITMIVADAYK---G  155 (393)
Q Consensus        85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~------~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---g  155 (393)
                      ..++++.++| .|.+++.|+.|..|+...+.   ....+.      ........+++.++|      +++++....   +
T Consensus       187 ~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~---~~~~~~~~~~l~~h~~~V~~l~~spdg------~~l~sgs~D~t~~  256 (393)
T d1sq9a_         187 ATSVDISERG-LIATGFNNGTVQISELSTLR---PLYNFESQHSMINNSNSIRSVKFSPQG------SLLAIAHDSNSFG  256 (393)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTE---EEEEEECCC---CCCCCEEEEEECSST------TEEEEEEEETTEE
T ss_pred             EEEEEECCCC-EEEEEeCCCcEEEEeecccc---cccccccccccccccceEEEccccccc------ceeeeecCCCCcc
Confidence            5678999987 68889999999999987653   122221      123456889999999      555543322   2


Q ss_pred             -eEEEeCCc---eEEEeec---------cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          156 -LLKISGNS---TVLLTDE---------AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       156 -l~~id~~g---~~~l~~~---------~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                       +..+|.+.   ...+...         ..|. ...+.++++.+||++.++.                 ...+.|..+|.
T Consensus       257 ~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~-----------------s~D~~v~vWd~  318 (393)
T d1sq9a_         257 CITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSA-----------------GWDGKLRFWDV  318 (393)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEET
T ss_pred             eeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEE-----------------CCCCEEEEEEC
Confidence             44456543   2222211         1111 1346789999999887764                 34578999999


Q ss_pred             CCCeEEEEecC----c-cCCCcEEEcCCCCEE
Q 016199          223 VTKETKVLVSD----L-YFANGVVLSPDQTHL  249 (393)
Q Consensus       223 ~t~~~~~~~~~----l-~~~ngi~~s~dg~~l  249 (393)
                      ++++......+    . .....++++++++.+
T Consensus       319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             CCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence            88876544332    1 123467888888754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.12  Score=44.09  Aligned_cols=225  Identities=10%  Similarity=0.069  Sum_probs=113.0

Q ss_pred             EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEE
Q 016199           89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLL  167 (393)
Q Consensus        89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l  167 (393)
                      +++.+|++|.+|+.||.|..|+..+++   ....+....+....+++.+ +      .|+.+...+-+...+... ....
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~---~~~~~~~h~~~V~~v~~~~-~------~l~s~s~D~~~~~~~~~~~~~~~   91 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMRD-N------IIISGSTDRTLKVWNAETGECIH   91 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEET-T------EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCC---EEEEEeCCCCCEEEEEeCC-C------ccccceeccccccccccccccee
Confidence            466678889999999999999987654   1333333345677888864 4      566665444455555544 2111


Q ss_pred             eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC
Q 016199          168 TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT  247 (393)
Q Consensus       168 ~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~  247 (393)
                      ........   ...... .+..+..+                  ...+.+..++..+++............ ........
T Consensus        92 ~~~~~~~~---~~~~~~-~~~~~~~~------------------~~d~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  148 (342)
T d2ovrb2          92 TLYGHTST---VRCMHL-HEKRVVSG------------------SRDATLRVWDIETGQCLHVLMGHVAAV-RCVQYDGR  148 (342)
T ss_dssp             EECCCSSC---EEEEEE-ETTEEEEE------------------ETTSEEEEEESSSCCEEEEEECCSSCE-EEEEECSS
T ss_pred             ccccccee---Eeeeec-cccccccc------------------ccceeEEEeecccccceeeeecccccc-eeeccccc
Confidence            11111100   111111 12223333                  223457777776665544332211111 22223333


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhC
Q 016199          248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLG  327 (393)
Q Consensus       248 ~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~  327 (393)
                      .+ +.....+.+..+++...+  ....+. ...  ........+|.+.++....                          
T Consensus       149 ~~-~~~~~d~~i~~~d~~~~~--~~~~~~-~~~--~~~~~~~~~~~~l~s~~~d--------------------------  196 (342)
T d2ovrb2         149 RV-VSGAYDFMVKVWDPETET--CLHTLQ-GHT--NRVYSLQFDGIHVVSGSLD--------------------------  196 (342)
T ss_dssp             CE-EEEETTSCEEEEEGGGTE--EEEEEC-CCS--SCEEEEEECSSEEEEEETT--------------------------
T ss_pred             ee-eeecCCCeEEEeecccce--eeEEEc-Ccc--cccccccCCCCEEEEEeCC--------------------------
Confidence            33 344456778888864321  111121 111  2234445567765544432                          


Q ss_pred             CCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          328 MPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       328 ~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                              +.|..+|. .++.+..+.... ..+..+...++.|+.++ ....|..+++....
T Consensus       197 --------g~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~s-~d~~i~iwd~~~~~  248 (342)
T d2ovrb2         197 --------TSIRVWDVETGNCIHTLTGHQ-SLTSGMELKDNILVSGN-ADSTVKIWDIKTGQ  248 (342)
T ss_dssp             --------SCEEEEETTTCCEEEEECCCC-SCEEEEEEETTEEEEEE-TTSCEEEEETTTCC
T ss_pred             --------CeEEEeecccceeeeEecccc-cceeEEecCCCEEEEEc-CCCEEEEEeccccc
Confidence                    34666664 456666555433 23445555667777776 44567777765543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.02  Score=51.99  Aligned_cols=115  Identities=6%  Similarity=-0.002  Sum_probs=70.4

Q ss_pred             ceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-e--EEEee--ccCCccccccccEEEcCCCcEEEEeCCCccchhh
Q 016199          129 RPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-T--VLLTD--EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE  203 (393)
Q Consensus       129 ~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~--~~l~~--~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~  203 (393)
                      ....+++.++|      .|..+...+-|..+|.+. .  ..+..  ...+. ...++.++++|||++.++-...      
T Consensus       186 ~~~~v~~s~dg------~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~sgs~D------  252 (393)
T d1sq9a_         186 FATSVDISERG------LIATGFNNGTVQISELSTLRPLYNFESQHSMINN-SNSIRSVKFSPQGSLLAIAHDS------  252 (393)
T ss_dssp             CCCEEEECTTS------EEEEECTTSEEEEEETTTTEEEEEEECCC---CC-CCCEEEEEECSSTTEEEEEEEE------
T ss_pred             cEEEEEECCCC------EEEEEeCCCcEEEEeecccccccccccccccccc-cceEEEcccccccceeeeecCC------
Confidence            35678999999      777775555577778754 2  11111  11111 1346789999999877663110      


Q ss_pred             heehhcccCCCcEEEEEeCCCCeEEEEec--------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199          204 YILDIFEGKPNGRLLSFDPVTKETKVLVS--------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK  265 (393)
Q Consensus       204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~  265 (393)
                              ...+.+..||..+++......              .....+.++++||++. +++....+.|..|+++
T Consensus       253 --------~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         253 --------NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             --------TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETT
T ss_pred             --------CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCe-eEEECCCCEEEEEECC
Confidence                    112346667887765433221              1123467999999975 4677778999999985

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.22  Score=46.49  Aligned_cols=33  Identities=3%  Similarity=-0.019  Sum_probs=23.5

Q ss_pred             CCCceEEEecCCCEEEEEec---------CCeEEEEEcCCCC
Q 016199           83 KGPEDLLYDAHSKLIYTGCE---------DGWIKRVTLNDSP  115 (393)
Q Consensus        83 ~~Pe~ia~d~~g~~L~~~~~---------~g~I~~~~~~~~~  115 (393)
                      ..+.+..+++||+.+++.+.         .+.++.++..++.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            35677889999997776642         3567778877665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.51  E-value=0.013  Score=54.41  Aligned_cols=177  Identities=14%  Similarity=0.048  Sum_probs=103.2

Q ss_pred             CC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ecCccCCCcEEEcCCCCEEEEEeCCCCe-----
Q 016199          187 DG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VSDLYFANGVVLSPDQTHLVYCETSMRR-----  258 (393)
Q Consensus       187 dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~~l~~~ngi~~s~dg~~l~v~~~~~~r-----  258 (393)
                      || .+|+.|                 ..+.||.++|.++.++...  ......++|+...+++++.||.+....+     
T Consensus        98 DGrylFVND-----------------kan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          98 DGRFLFMND-----------------KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN  160 (459)
T ss_dssp             EEEEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred             ceeEEEEEc-----------------CCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCC
Confidence            67 688887                 6778999999998877553  3445677899988888888888755433     


Q ss_pred             --------------EEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc---chhhhhhhcCc-chhhh-h
Q 016199          259 --------------CRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF---STYWDLAYRYP-FIRKV-S  319 (393)
Q Consensus       259 --------------i~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r---~~~~~~~~~~~-~~r~~-~  319 (393)
                                    +..+|.+.   .+...-+ ..++.|+++.++.+|++.+.+....   ..+.+..+..- ++.-+ .
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~t---m~V~~QV-~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADK---WEVAWQV-LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTT---TEEEEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             CCccccchhhcceEEEEEecCC---ceEEEEe-eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech
Confidence                          34455431   1111111 2345789999999999555543221   12334333211 11000 0


Q ss_pred             hhhhhhh-CCCCCCCCCceEEEECCC---C-cEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199          320 GMVVRYL-GMPPMGKSSSGVFIVDLD---G-KPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ  386 (393)
Q Consensus       320 ~~~~~~~-~~~~~~~~~~~v~~~d~~---g-~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~  386 (393)
                      .+..... .+..  ...+++-.+|..   + .+++.+..+..+....+.+++.++|+++--++.+..+|++|
T Consensus       237 ~rie~av~~Gk~--~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         237 AEIEKAIAAGDY--QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HHHHHHHHHTCS--EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             HHhHHhhhcCCc--EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            1111111 0010  111345566643   2 34555665654455566778899999999999999999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.21  Score=41.32  Aligned_cols=65  Identities=15%  Similarity=0.106  Sum_probs=42.6

Q ss_pred             EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199           89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS  163 (393)
Q Consensus        89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g  163 (393)
                      +++.+|++|.+|+.||.|..|+.++++   ....+....+....++++  +     +.|+.+...+.+..++...
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~v~~~--~-----~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQYD--E-----RVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCC---EEEEECCCSSCEEEEECC--S-----SEEEEEETTSCEEEEESSS
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCc---EEEEEecCCCCEeeeecc--c-----ceeeccccccccccccccc
Confidence            456788889999999999999987654   133343334456777764  4     1566665555566666544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.92  E-value=0.55  Score=42.07  Aligned_cols=185  Identities=14%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             ecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC------CCCCCCCceEEEEEeCC-C---c--eEE
Q 016199           91 DAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA------NSDPDADRITMIVADAY-K---G--LLK  158 (393)
Q Consensus        91 d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d------~~G~~~~~~~L~v~~~~-~---g--l~~  158 (393)
                      +|+..+++.....++|+.|+++++.    +..+ + .++++.+.+-      .++     ..+.++... .   .  ++.
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~G~~----l~~~-~-~Gr~NNVDvr~~~~l~~~~-----~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLEGKM----LHSY-H-TGKLNNVDIRYDFPLNGKK-----VDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETTCCE----EEEC-C-SSCEEEEEEEEEEEETTEE-----EEEEEEEECCTTTCEEEEEE
T ss_pred             CcCccEEEEEcCcCCEEEEcCCCcE----EEec-c-cCCcCccccccccccCCcc-----eEEEEEeCCcCcceeEEEEE
Confidence            4555544444456679999998764    4433 2 3677665432      222     124444322 1   2  455


Q ss_pred             EeCCc--eEEEeeccCC--ccccccccEEE--cC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEE--eC-CCCeEE
Q 016199          159 ISGNS--TVLLTDEAEG--QKFKLTDGVDV--AD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF--DP-VTKETK  228 (393)
Q Consensus       159 id~~g--~~~l~~~~~g--~~~~~~~~l~~--d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~--d~-~t~~~~  228 (393)
                      ++...  ++.+......  .....+.+++.  ++ +|.+|+-..                ...|.+..|  .. ..+.++
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~----------------~k~G~v~q~~l~~~~~g~v~  169 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVT----------------GKEGEFEQYELNADKNGYIS  169 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEE----------------CSSSEEEEEEEEECTTSSEE
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEE----------------cCCceEEEEEEEcCCCCcee
Confidence            66544  3322211000  01223567776  55 466554321                123444433  22 223222


Q ss_pred             E-EecC---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee----ccCCCCCCeEEE--CCCCC-EEEE
Q 016199          229 V-LVSD---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI----ETLPGLPDNIRY--DGEGH-YLIA  297 (393)
Q Consensus       229 ~-~~~~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~----~~l~g~P~~i~~--d~~G~-lwva  297 (393)
                      . +.+.   -..+-|+.++.+.+.||++|. ..++++|+.+.+.........    .++.+=|.|+++  .++|. |||+
T Consensus       170 ~~lvr~f~~~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~Gyliv  248 (353)
T d1h6la_         170 GKKVRAFKMNSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLA  248 (353)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEE
T ss_pred             eEeeeccCCCCccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEE
Confidence            1 2222   234678899999889999997 568999998643222212111    123334677774  33444 7777


Q ss_pred             EecCcc
Q 016199          298 LATEFS  303 (393)
Q Consensus       298 ~~~~r~  303 (393)
                      ...+.+
T Consensus       249 SsQG~n  254 (353)
T d1h6la_         249 SSQGNS  254 (353)
T ss_dssp             EEGGGT
T ss_pred             EcCCCC
Confidence            766544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.39  Score=40.07  Aligned_cols=160  Identities=9%  Similarity=0.063  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCcccccc
Q 016199          105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLT  179 (393)
Q Consensus       105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~  179 (393)
                      .|+..|.+++.    ...+..........++.|||     +.|.+.....   .++.++.++  .+.+... .+.    .
T Consensus        20 ~l~i~d~dG~~----~~~l~~~~~~~~sP~wSPDG-----k~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~   85 (269)
T d2hqsa1          20 ELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAVRQVASF-PRH----N   85 (269)
T ss_dssp             EEEEEETTSCS----CEEEEEESSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEETTTCCEEEEECC-SSC----E
T ss_pred             EEEEEcCCCCC----cEEEecCCCceeeeEECCCC-----CEEEEEEeeccCcceeeeecccCceeEEeee-ecc----c
Confidence            46666666554    33333323334567899999     3564443333   366777666  3333322 221    2


Q ss_pred             ccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC--C
Q 016199          180 DGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM--R  257 (393)
Q Consensus       180 ~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~--~  257 (393)
                      .....+++|..++.....              .....+..+......................+.+++.+++.....  .
T Consensus        86 ~~~~~spdg~~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  151 (269)
T d2hqsa1          86 GAPAFSPDGSKLAFALSK--------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP  151 (269)
T ss_dssp             EEEEECTTSSEEEEEECT--------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             ccceecCCCCeeeEeeec--------------CCccceeecccccccceeeeeccccccccccccccccceecccccCCc
Confidence            355788998544432110              122234444443333333333222233345667777666655433  3


Q ss_pred             eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199          258 RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI  296 (393)
Q Consensus       258 ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv  296 (393)
                      .|+++++++..   ..... ...+........++|+..+
T Consensus       152 ~i~~~~~~~~~---~~~~~-~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         152 QVYKVNINGGA---PQRIT-WEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             EEEEEETTSSC---CEECC-CSSSEEEEEEECTTSSEEE
T ss_pred             eEeeeeccccc---ceeee-cccccccccccccccceeE
Confidence            67777765432   11111 1122222345677777433

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=95.75  E-value=0.11  Score=42.39  Aligned_cols=163  Identities=13%  Similarity=0.062  Sum_probs=94.4

Q ss_pred             cccccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc---eeeeeecCC-CceeeeEECCCCCCCC
Q 016199           68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS---LVHNWINTG-GRPLGIAFANSDPDAD  143 (393)
Q Consensus        68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~---~~~~~~~~~-~~p~gl~~d~~G~~~~  143 (393)
                      ++-+..+.+|+.+....=.-|+++|+|+ ||.-. ++.+|.=.+....+..   ..+.+...+ +.=.-+.|||+|    
T Consensus        25 dn~~~rA~~lGk~g~~n~~~i~fsP~G~-LyaVr-~~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G----   98 (235)
T d1tl2a_          25 DNWLARATLIGKGGWSNFKFLFLSPGGE-LYGVL-NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG----   98 (235)
T ss_dssp             CCHHHHSEEEESSSCTTCSEEEECTTSC-EEEEE-TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS----
T ss_pred             ccccchhhhcCcccccceeEEEECCCCc-EEEEE-CCeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCc----
Confidence            4446677888887777777899999996 88654 4478865544433211   011111110 123468899999    


Q ss_pred             ceEEEEEeCCCceEEEeCCc--e-EEEe--eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEE
Q 016199          144 RITMIVADAYKGLLKISGNS--T-VLLT--DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLL  218 (393)
Q Consensus       144 ~~~L~v~~~~~gl~~id~~g--~-~~l~--~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~  218 (393)
                        -||+.. .+.|++=.+-.  . ..+.  ..+....-+...-|-+||+|.||...                   +++++
T Consensus        99 --~LyaVt-~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~-------------------~~~l~  156 (235)
T d1tl2a_          99 --YLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-------------------GQQFY  156 (235)
T ss_dssp             --CEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-------------------TTEEE
T ss_pred             --eEEEec-CcceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEE-------------------CCcEE
Confidence              899886 45688765421  0 0010  01111111223356789999999763                   23588


Q ss_pred             EEeCCCCe-------EEEEe-cCccCCCcEEEcCCCCEEEEEeCCCCeEEE
Q 016199          219 SFDPVTKE-------TKVLV-SDLYFANGVVLSPDQTHLVYCETSMRRCRK  261 (393)
Q Consensus       219 ~~d~~t~~-------~~~~~-~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~  261 (393)
                      +-.|.++.       .+.+- .+-..++.|.+++|| +|+...  .+.+++
T Consensus       157 k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG-~L~~v~--~g~~Y~  204 (235)
T d1tl2a_         157 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGKFYE  204 (235)
T ss_dssp             EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS-CEEEEE--TTEEEE
T ss_pred             EcCCCCCCCchhhhhhhhhccCcccCceEEEECCCC-cEEEEe--CCeEEe
Confidence            88776543       22333 234456789999999 455542  245544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.67  E-value=0.13  Score=43.33  Aligned_cols=80  Identities=16%  Similarity=0.182  Sum_probs=50.7

Q ss_pred             cEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC-----CeEEEEEecCCCCcceeeeecc------CCCCC
Q 016199          215 GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM-----RRCRKFYIKGKNAGRVEKFIET------LPGLP  283 (393)
Q Consensus       215 g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~-----~ri~~~~~~g~~~~~~~~~~~~------l~g~P  283 (393)
                      +.||.+|.++++.+.+..+-......++||||+.|.++....     ..|++++..+..   .+.+...      .....
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~---~~~lt~~~~~~~~~~~~~   97 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---IKRITYFSGKSTGRRMFT   97 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE---EEECCCCCEEEETTEECS
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc---eEEeeecCCCccCccccc
Confidence            469999999998888876655667789999999887664211     247777765432   2222100      00123


Q ss_pred             CeEEECCCCCEEEE
Q 016199          284 DNIRYDGEGHYLIA  297 (393)
Q Consensus       284 ~~i~~d~~G~lwva  297 (393)
                      ......++|+..+-
T Consensus        98 ~~~~~spdg~~l~~  111 (281)
T d1k32a2          98 DVAGFDPDGNLIIS  111 (281)
T ss_dssp             EEEEECTTCCEEEE
T ss_pred             cccccCCCCCEEEE
Confidence            45678888885443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.28  Score=41.52  Aligned_cols=145  Identities=8%  Similarity=0.021  Sum_probs=75.3

Q ss_pred             EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC-CCCCCCCceEEEEEeCCCceEEEeCCc---
Q 016199           88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA-NSDPDADRITMIVADAYKGLLKISGNS---  163 (393)
Q Consensus        88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d-~~G~~~~~~~L~v~~~~~gl~~id~~g---  163 (393)
                      +.+.++++.+.+++.++.|..++.......................... .++     ..+.++...+.+...+.+.   
T Consensus       154 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-----EGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             EEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-----CEEEEEETTSEEEEEECCTTCC
T ss_pred             eeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC-----CEEEeecCCCeEEEEEecCCcc
Confidence            4566777788899999999999986543111111111111122222322 233     1344443333333332211   


Q ss_pred             ------eEEEeec---c-CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199          164 ------TVLLTDE---A-EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD  233 (393)
Q Consensus       164 ------~~~l~~~---~-~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~  233 (393)
                            .......   . .......+++++++|+|.++++-                 ...|.|..||..+++.......
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg-----------------~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA-----------------GSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE-----------------ETTSCEEEEETTTTEEEEECCC
T ss_pred             eeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEE-----------------CCCCEEEEEECCCCcEEEEecC
Confidence                  0111100   0 01112235688999999766653                 3456799999987765333333


Q ss_pred             ccCCCcEEEcCCCCEEEEEeC
Q 016199          234 LYFANGVVLSPDQTHLVYCET  254 (393)
Q Consensus       234 l~~~ngi~~s~dg~~l~v~~~  254 (393)
                      ......++++++++.+.++..
T Consensus       292 ~~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         292 FNEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             CSSSEEEEEEECSSEEEEEEE
T ss_pred             CCCCEEEEEEeCCCEEEEEEc
Confidence            334456889999987766543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.56  Score=39.83  Aligned_cols=135  Identities=10%  Similarity=0.149  Sum_probs=75.0

Q ss_pred             CcEEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCC
Q 016199          214 NGRLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG  292 (393)
Q Consensus       214 ~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G  292 (393)
                      .+.+..+|..+++...... .......+.+++++..++.. ...+.|..|++...   ..........+....++.+  +
T Consensus       180 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~~--~  253 (355)
T d1nexb2         180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLS--D  253 (355)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTTC---CEEEEECCCSSCCCEEEEC--S
T ss_pred             cceeeeeecccccceeeeeccccccccccccccceeeecc-cccceEEeeecccc---ccccccccccccccccccc--c
Confidence            4568888887765543333 23445667888998766554 45788888887532   2221221222223445554  4


Q ss_pred             CEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEE
Q 016199          293 HYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYC  371 (393)
Q Consensus       293 ~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyi  371 (393)
                      +++++....                                  +.|..+|. +++....++......+.. ...++++.+
T Consensus       254 ~~l~~~~~d----------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~  298 (355)
T d1nexb2         254 KFLVSAAAD----------------------------------GSIRGWDANDYSRKFSYHHTNLSAITT-FYVSDNILV  298 (355)
T ss_dssp             SEEEEECTT----------------------------------SEEEEEETTTCCEEEEEECTTCCCCCE-EEECSSEEE
T ss_pred             ceeeeeecc----------------------------------cccccccccccceecccccCCceEEEE-EcCCCCEEE
Confidence            555544322                                  34666665 345555555544333333 344555555


Q ss_pred             EecCCCeEEEEeCCCCCCC
Q 016199          372 GSVHHRGILHLDVNQHPAR  390 (393)
Q Consensus       372 gs~~~~~i~~~~~~~~~~~  390 (393)
                      ++ ..+.|...|++..+.+
T Consensus       299 ~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         299 SG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EE-ETTEEEEEETTTCCBC
T ss_pred             EE-eCCEEEEEECCCCCEE
Confidence            55 3568888888766554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.00  E-value=0.2  Score=46.19  Aligned_cols=118  Identities=9%  Similarity=0.026  Sum_probs=71.3

Q ss_pred             eeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeec--cCCccccccccEEEcCCCc-EEEEeCCCccchhhhe
Q 016199          131 LGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDE--AEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYI  205 (393)
Q Consensus       131 ~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~--~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~  205 (393)
                      ..+..-+++      .++.. ..++++.+|..+  .+.+...  .... ...+.++.++|||. |.++....+       
T Consensus        20 ~~~~W~~d~------~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~i~~~~~SpDg~~i~~~~~~~~-------   84 (470)
T d2bgra1          20 YSLRWISDH------EYLYK-QENNILVFNAEYGNSSVFLENSTFDEF-GHSINDYSISPDGQFILLEYNYVK-------   84 (470)
T ss_dssp             CCCEECSSS------EEEEE-SSSCEEEEETTTCCEEEEECTTTTTTS-SSCCCEEEECTTSSEEEEEEEEEE-------
T ss_pred             cCCEeCCCC------EEEEE-cCCcEEEEECCCCCEEEEEchhhhhhc-cCccceeEECCCCCEEEEEECCcc-------
Confidence            445566677      65544 456788888765  3333322  1211 23467889999995 444421110       


Q ss_pred             ehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199          206 LDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK  267 (393)
Q Consensus       206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~  267 (393)
                        +...+..+.++.||..+++...+...-.....+.++|||+.+.+..  ++.++.++..+.
T Consensus        85 --~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g  142 (470)
T d2bgra1          85 --QWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (470)
T ss_dssp             --CSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             --eeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCC
Confidence              1112345678999999988765544333445678999999877653  467888776543

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=94.95  E-value=0.27  Score=44.85  Aligned_cols=151  Identities=11%  Similarity=0.061  Sum_probs=82.5

Q ss_pred             CceEEEecC-CCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-------CCceeeeEECCCCCCCCceEEEEEeCC---
Q 016199           85 PEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-------GGRPLGIAFANSDPDADRITMIVADAY---  153 (393)
Q Consensus        85 Pe~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-------~~~p~gl~~d~~G~~~~~~~L~v~~~~---  153 (393)
                      -.+|+++|. .+++|+++..|+|++-+-.+..    ++.+...       ......|++|++.++    .+|++...   
T Consensus        14 ~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~t----W~~~~~~~~~~~~~~~~~~~iavdp~np~----~vy~~tg~~~~   85 (427)
T d2ebsa1          14 ITGIVAHPKTKDLLYARTDIGGAYRWDAGTSK----WIPLNDFIEAQDMNIMGTESIALDPNNPD----RLYLAQGRYVG   85 (427)
T ss_dssp             EEEEEECSSSTTCEEEEESSSCEEEEETTTTE----EEESCTTCCGGGGGGCSEEEEEEETTEEE----EEEEEECSCTT
T ss_pred             EEEEEECCCCCCEEEEEecCCCEEEEECCCCc----eEECCCCCCCCCcccccEeEEEECCCCCC----EEEEEeccccC
Confidence            356889884 4579999988889986644333    4443211       123567899986421    78988532   


Q ss_pred             ---CceEEEeCCce--EEEeecc----CCccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199          154 ---KGLLKISGNST--VLLTDEA----EGQKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP  222 (393)
Q Consensus       154 ---~gl~~id~~g~--~~l~~~~----~g~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~  222 (393)
                         .||++=.-.|.  +.+....    ........+.|+++|.+  .+|++.                  ..++|++-.-
T Consensus        86 ~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~------------------~~~gl~~S~D  147 (427)
T d2ebsa1          86 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT------------------RTEGIWKSSD  147 (427)
T ss_dssp             SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC------------------SSSCEEEESS
T ss_pred             CcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc------------------cccceeeecC
Confidence               34554433332  2222111    11111234568999853  788873                  3456776543


Q ss_pred             CCCeEEEEecC---cc---CCCcEEEcCC-CCEEEEEeCCCCeEEE
Q 016199          223 VTKETKVLVSD---LY---FANGVVLSPD-QTHLVYCETSMRRCRK  261 (393)
Q Consensus       223 ~t~~~~~~~~~---l~---~~ngi~~s~d-g~~l~v~~~~~~ri~~  261 (393)
                      .+...+.+...   ..   ....+.++|. ...+|+......+|++
T Consensus       148 ~G~tW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~  193 (427)
T d2ebsa1         148 RAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  193 (427)
T ss_dssp             TTSSCEECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             CCceeeecccCcccccCCccceEEEecccccceeeeeeeeccccee
Confidence            33344433211   11   1234667664 4467877776677776

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=1.6  Score=40.19  Aligned_cols=60  Identities=7%  Similarity=0.015  Sum_probs=37.2

Q ss_pred             EEEcCCCCEEEEEeCCC----CeEEEEEecCCCCcceeeeeccCC--CCCCeEEECCCCCEEEEEecC
Q 016199          240 VVLSPDQTHLVYCETSM----RRCRKFYIKGKNAGRVEKFIETLP--GLPDNIRYDGEGHYLIALATE  301 (393)
Q Consensus       240 i~~s~dg~~l~v~~~~~----~ri~~~~~~g~~~~~~~~~~~~l~--g~P~~i~~d~~G~lwva~~~~  301 (393)
                      ++++++++.+|+..+..    ..|++.+++|....+  .+...+.  ..-..+.++++|+++|-...+
T Consensus       365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~--~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ--CLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB--CSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcce--eeccccCCCCCEEEEEECCCCCEEEEEeec
Confidence            56889999999987643    348888887643221  1111111  112367899999998866543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.57  E-value=1.5  Score=39.12  Aligned_cols=83  Identities=14%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             EEEEEeCCCCeEEEEec-------CccCCCcEEE--cCC-CCEEEEEeCCCCeEEEEEecCCCCcc-----eeeeeccCC
Q 016199          216 RLLSFDPVTKETKVLVS-------DLYFANGVVL--SPD-QTHLVYCETSMRRCRKFYIKGKNAGR-----VEKFIETLP  280 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~~~-------~l~~~ngi~~--s~d-g~~l~v~~~~~~ri~~~~~~g~~~~~-----~~~~~~~l~  280 (393)
                      .+|.+|+....+..+..       .+..+.|+|+  +++ |....+.....+++..|.+...+.+.     ...|  .++
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~  179 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMN  179 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECS
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCC
Confidence            46777876666554422       2445889998  544 44434445557788888774322222     1222  355


Q ss_pred             CCCCeEEECCC-CCEEEEEec
Q 016199          281 GLPDNIRYDGE-GHYLIALAT  300 (393)
Q Consensus       281 g~P~~i~~d~~-G~lwva~~~  300 (393)
                      ..+.|+++|.+ +++||+.-.
T Consensus       180 ~q~EGCVvDde~~~LyisEE~  200 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEED  200 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETT
T ss_pred             CccceEEEeCCCCcEEEecCc
Confidence            66788888776 679998653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=1.2  Score=37.26  Aligned_cols=135  Identities=12%  Similarity=0.078  Sum_probs=69.9

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC-eEEECCC
Q 016199          213 PNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD-NIRYDGE  291 (393)
Q Consensus       213 ~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~-~i~~d~~  291 (393)
                      ..+.|..||..+++....... ....-.+++++++. +++.+..+.|..|++...+  ....+. ....... -.++..+
T Consensus       195 ~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~s~s~d~~i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         195 LDTSIRVWDVETGNCIHTLTG-HQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQ--CLQTLQ-GPNKHQSAVTCLQFN  269 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECC-CCSCEEEEEEETTE-EEEEETTSCEEEEETTTCC--EEEEEC-STTSCSSCEEEEEEC
T ss_pred             CCCeEEEeecccceeeeEecc-cccceeEEecCCCE-EEEEcCCCEEEEEeccccc--cccccc-ccceeeeceeecccC
Confidence            356788888877654333222 11222344555654 4556678899999975432  122222 2111122 2334445


Q ss_pred             CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC----CCccEEEEEeC
Q 016199          292 GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE----MSLISSAIKIG  366 (393)
Q Consensus       292 G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~----~~~~~~~~~~~  366 (393)
                      +++.++....                                  +.|..+|. +|+.++.+....    ...+..+.-..
T Consensus       270 ~~~~~s~s~D----------------------------------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         270 KNFVITSSDD----------------------------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             SSEEEEEETT----------------------------------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             CCeeEEEcCC----------------------------------CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence            6766665533                                  45777775 688887775322    23344444444


Q ss_pred             CEEEEEecCC-----CeEEEEeCCC
Q 016199          367 DHLYCGSVHH-----RGILHLDVNQ  386 (393)
Q Consensus       367 g~Lyigs~~~-----~~i~~~~~~~  386 (393)
                      +..++.+-..     .+|...|++.
T Consensus       316 ~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         316 TKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            3333332222     2577777754

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=89.00  E-value=0.89  Score=36.80  Aligned_cols=118  Identities=12%  Similarity=0.096  Sum_probs=70.6

Q ss_pred             ccccccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc---eeeeeec-CCCceeeeEECCCCCCC
Q 016199           67 NERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS---LVHNWIN-TGGRPLGIAFANSDPDA  142 (393)
Q Consensus        67 ~~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~---~~~~~~~-~~~~p~gl~~d~~G~~~  142 (393)
                      ++.-...+.+|+.+.-..=.-+.+||+| .||+.+ ++.+++=.+-+.+.+.   ....+.. ..+.-.-|.|||+|   
T Consensus        71 nq~wf~~atrIG~ggWn~FkflffdP~G-~LyaVt-~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G---  145 (235)
T d1tl2a_          71 NDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG---  145 (235)
T ss_dssp             TCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS---
T ss_pred             hHHHHHhhhhcccCcccceEEEEECCCc-eEEEec-CcceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCc---
Confidence            3445677888988754444558899998 699887 5789987765544110   0011111 11234578999999   


Q ss_pred             CceEEEEEeCCCceEEEeC-Cc--eEEEe--eccCCccccccccEEEcCCCcEEEE
Q 016199          143 DRITMIVADAYKGLLKISG-NS--TVLLT--DEAEGQKFKLTDGVDVADDGMIYFT  193 (393)
Q Consensus       143 ~~~~L~v~~~~~gl~~id~-~g--~~~l~--~~~~g~~~~~~~~l~~d~dG~l~~t  193 (393)
                         .||.... ..+++-.+ .+  -..+.  +.+....-...+.+.+.++|+||..
T Consensus       146 ---~LYaV~~-~~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v  197 (235)
T d1tl2a_         146 ---YLYAVHG-QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV  197 (235)
T ss_dssp             ---CEEEEET-TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred             ---eEEEEEC-CcEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEE
Confidence               8998854 45777654 22  11110  1111111233467889999999987

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.59  E-value=6.1  Score=34.19  Aligned_cols=80  Identities=10%  Similarity=0.015  Sum_probs=48.4

Q ss_pred             EEEEEeCCCCeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC--CCCCeEEEC
Q 016199          216 RLLSFDPVTKETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP--GLPDNIRYD  289 (393)
Q Consensus       216 ~l~~~d~~t~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~--g~P~~i~~d  289 (393)
                      .+.+||+.+++.+..    .....+..+.++..||+.+++.......+.+||+...   ...... .++  ..-...++.
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~---~w~~~~-~~~~~r~~~~~~~~  128 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD---SWIPGP-DMQVARGYQSSATM  128 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT---EEEECC-CCSSCCSSCEEEEC
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC---cccccc-cccccccccceeee
Confidence            467899998876432    1123445678889999655544455578999998543   222221 222  112346777


Q ss_pred             CCCCEEEEEe
Q 016199          290 GEGHYLIALA  299 (393)
Q Consensus       290 ~~G~lwva~~  299 (393)
                      .||++|+.-.
T Consensus       129 ~dG~v~v~GG  138 (387)
T d1k3ia3         129 SDGRVFTIGG  138 (387)
T ss_dssp             TTSCEEEECC
T ss_pred             cCCceeeecc
Confidence            8899888643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.20  E-value=2.6  Score=39.77  Aligned_cols=113  Identities=13%  Similarity=0.152  Sum_probs=61.1

Q ss_pred             CCCEEEEEecCCeEEEEEcCCCCCcceeeeeec----------CC-CceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN----------TG-GRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~----------~~-~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      +| .||+++.++.|+.+|.+++.  ..++ +..          .+ ....+++.. ++      ++|+++....|+.+|.
T Consensus        66 ~g-~vyv~t~~~~v~AlDa~tG~--~lW~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~v~~~~~~g~l~Alda  134 (560)
T d1kv9a2          66 DG-VIYTSMSWSRVIAVDAASGK--ELWR-YDPEVAKVKARTSCCDAVNRGVALW-GD------KVYVGTLDGRLIALDA  134 (560)
T ss_dssp             TT-EEEEEEGGGEEEEEETTTCC--EEEE-ECCCCCGGGGGGCTTCSCCCCCEEE-BT------EEEEECTTSEEEEEET
T ss_pred             CC-EEEEECCCCeEEEEeCCCCC--EEEE-ECCCCCccccccccccccccCccee-CC------eEEEEeCCCEEEEEEC
Confidence            45 69999999999999998775  1121 110          00 011234433 45      7999987778999997


Q ss_pred             Cc-eEEEeeccCCcc-ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          162 NS-TVLLTDEAEGQK-FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       162 ~g-~~~l~~~~~g~~-~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      ++ .........+.. ......--+--+|.+++......            ....|.|..||..||+..
T Consensus       135 ~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~  191 (560)
T d1kv9a2         135 KTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE------------YGVRGFVSAYDADTGKLA  191 (560)
T ss_dssp             TTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             CCCcEEeccCccCcccceeeeeeeeeecCccccccccee------------ccccceEEEEECCCceEE
Confidence            54 333322211111 00011111112566777643321            133467888888888653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.03  E-value=2.4  Score=40.12  Aligned_cols=112  Identities=13%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-----------CCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199           93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-----------GGRPLGIAFANSDPDADRITMIVADAYKGLLKISG  161 (393)
Q Consensus        93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-----------~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~  161 (393)
                      +| .||+++.+++|+.+|.++++  ..++ +...           .....+++.. ++      ++|+++....++.+|.
T Consensus        77 ~g-~vyv~t~~~~v~AlDa~TG~--~~W~-~~~~~~~~~~~~~~~~~~~~g~~~~-~~------~v~~~t~~g~l~alda  145 (573)
T d1kb0a2          77 DG-IMYVSASWSVVHAIDTRTGN--RIWT-YDPQIDRSTGFKGCCDVVNRGVALW-KG------KVYVGAWDGRLIALDA  145 (573)
T ss_dssp             TT-EEEEECGGGCEEEEETTTTE--EEEE-ECCCCCGGGGGGSSSCSCCCCCEEE-TT------EEEEECTTSEEEEEET
T ss_pred             CC-EEEEECCCCeEEEEeCCCCC--eEEE-eCCCCCcccccccccccccccceEE-CC------cEEEEecccceeeecc
Confidence            45 69999999999999998764  1111 1100           0112345554 56      8999987778999997


Q ss_pred             Cc-eEEEeec-cCCcccc-ccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199          162 NS-TVLLTDE-AEGQKFK-LTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET  227 (393)
Q Consensus       162 ~g-~~~l~~~-~~g~~~~-~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~  227 (393)
                      ++ ....... .++.... ...+--+--++.++++.....            ....|.|..+|..||+.
T Consensus       146 ~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~  202 (573)
T d1kb0a2         146 ATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE------------YGVRGYITAYDAETGER  202 (573)
T ss_dssp             TTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCE
T ss_pred             ccccceecccCccCCcceEEeecceEEEeccEEEeecccc------------ccccceEEEEecCCccc
Confidence            54 3333222 1111110 011111112567777754322            23456788888888864

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.31  E-value=15  Score=34.30  Aligned_cols=54  Identities=13%  Similarity=0.097  Sum_probs=33.9

Q ss_pred             CCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199          334 SSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP  388 (393)
Q Consensus       334 ~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~  388 (393)
                      +.+.|..+|+ .|+++-.+..+.......+.-.+|-+|+|+ .+.++..||.+...
T Consensus       442 ~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~-~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT-LDGYLKALDNKDGK  496 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC-TTSEEEEEETTTCC
T ss_pred             CcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEEC-CCCeEEEEECCCCc
Confidence            4467999997 588887776554222222334677888875 34577777765543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=84.62  E-value=11  Score=32.30  Aligned_cols=102  Identities=14%  Similarity=0.077  Sum_probs=59.4

Q ss_pred             EEEEEcCCCCCcceeeeeec--C--CCceeeeEECCCCCCCCceEEEEEeCC--CceEEEeCCc-e-EEEeeccCCcccc
Q 016199          106 IKRVTLNDSPADSLVHNWIN--T--GGRPLGIAFANSDPDADRITMIVADAY--KGLLKISGNS-T-VLLTDEAEGQKFK  177 (393)
Q Consensus       106 I~~~~~~~~~~~~~~~~~~~--~--~~~p~gl~~d~~G~~~~~~~L~v~~~~--~gl~~id~~g-~-~~l~~~~~g~~~~  177 (393)
                      +.+||+.+++    +.....  .  .....+.++..+|      ++|++...  ..+.++|+.. . ..+. ...  .-+
T Consensus        54 ~~~yd~~t~~----w~~~~~~~~~~~~~~~~~~~~~~g------~i~v~Gg~~~~~~~~yd~~~~~w~~~~-~~~--~~r  120 (387)
T d1k3ia3          54 TSSWDPSTGI----VSDRTVTVTKHDMFCPGISMDGNG------QIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQ--VAR  120 (387)
T ss_dssp             EEEECTTTCC----BCCCEEEECSCCCSSCEEEECTTS------CEEEECSSSTTCEEEEEGGGTEEEECC-CCS--SCC
T ss_pred             EEEEECCCCc----EeecCCCCCCcccceeEEEEecCC------cEEEeecCCCcceeEecCccCcccccc-ccc--ccc
Confidence            5678887765    443221  1  1123467788899      88887432  3477788765 2 1221 111  123


Q ss_pred             ccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe
Q 016199          178 LTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV  231 (393)
Q Consensus       178 ~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~  231 (393)
                      .-+..++..||.+|+.-....           .+.....+.+||+.+++.+.+.
T Consensus       121 ~~~~~~~~~dG~v~v~GG~~~-----------~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         121 GYQSSATMSDGRVFTIGGSWS-----------GGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             SSCEEEECTTSCEEEECCCCC-----------SSSCCCCEEEEETTTTEEEEET
T ss_pred             cccceeeecCCceeeeccccc-----------cccccceeeeecCCCCceeecC
Confidence            346778888999888732110           1122345899999998887653

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=83.62  E-value=14  Score=32.57  Aligned_cols=118  Identities=13%  Similarity=0.168  Sum_probs=66.8

Q ss_pred             CCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce--EEEeecc--CCccccccccEEEcCCC--cEEEEeCCCccc
Q 016199          127 GGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST--VLLTDEA--EGQKFKLTDGVDVADDG--MIYFTDASNKYY  200 (393)
Q Consensus       127 ~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~--~~l~~~~--~g~~~~~~~~l~~d~dG--~l~~td~~~~~~  200 (393)
                      +++..+|+++|+.++    .+|++...+||++-+-.|.  +.+....  .......+.+|++||..  .+|++....   
T Consensus        11 gg~~~~i~~~P~~~~----~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~---   83 (427)
T d2ebsa1          11 GGYITGIVAHPKTKD----LLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY---   83 (427)
T ss_dssp             CSCEEEEEECSSSTT----CEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC---
T ss_pred             CCcEEEEEECCCCCC----EEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccc---
Confidence            567889999986543    7899876788988765452  2221111  11223345689999863  788874211   


Q ss_pred             hhhheehhcccCCCcEEEEEeCCCCeEEEEecCc---------cCCCcEEEcCCC-CEEEEEeCCCCeEEE
Q 016199          201 LREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL---------YFANGVVLSPDQ-THLVYCETSMRRCRK  261 (393)
Q Consensus       201 ~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l---------~~~ngi~~s~dg-~~l~v~~~~~~ri~~  261 (393)
                               .+...++|++=.-.+...+.+....         .....|+++|.+ +.+|+. +..++|++
T Consensus        84 ---------~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~-~~~~gl~~  144 (427)
T d2ebsa1          84 ---------VGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWK  144 (427)
T ss_dssp             ---------TTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEE-CSSSCEEE
T ss_pred             ---------cCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccc-ccccceee
Confidence                     1122345766543334444443221         123458888864 456654 44566776

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.83  E-value=21  Score=33.27  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=62.1

Q ss_pred             CCCEEEEEec-CCeEEEEEc-CCCCCcceeeeeecC----------C-CceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199           93 HSKLIYTGCE-DGWIKRVTL-NDSPADSLVHNWINT----------G-GRPLGIAFANSDPDADRITMIVADAYKGLLKI  159 (393)
Q Consensus        93 ~g~~L~~~~~-~g~I~~~~~-~~~~~~~~~~~~~~~----------~-~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i  159 (393)
                      +| .+|+++. ++.|+.++. ++++  ..++ +...          + ....++++. +|      ++|+++....|+.+
T Consensus        62 ~g-~vyv~t~~~~~v~Alda~~tG~--~~W~-~~~~~~~~~~~~~~~~~~~rg~a~~-~~------~i~~~~~~g~l~al  130 (571)
T d2ad6a1          62 GD-MMYVHSAFPNNTYALNLNDPGK--IVWQ-HKPKQDASTKAVMCCDVVDRGLAYG-AG------QIVKKQANGHLLAL  130 (571)
T ss_dssp             TT-EEEEECSTTTCEEEEETTCTTS--EEEE-ECCCCCGGGGGGCTTCSCCCCCEEE-TT------EEEEECTTSEEEEE
T ss_pred             CC-EEEEecCCCCeEEEEeCCCCCc--eEEE-ecCCCCcccccccccCcCCCcceee-CC------eEEEEeCCCcEEee
Confidence            45 6999886 688999996 3343  1122 1110          0 112456665 56      89999877779999


Q ss_pred             eCCc-eEEEeeccCCc-cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199          160 SGNS-TVLLTDEAEGQ-KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK  228 (393)
Q Consensus       160 d~~g-~~~l~~~~~g~-~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~  228 (393)
                      |.++ ........... .......--+--++.++++..+..            ....|.|..||..||+..
T Consensus       131 da~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         131 DAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAE------------LGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             ETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGG------------GTCCCEEEEEETTTCCEE
T ss_pred             ehhhhhhhccccccccccccceeecCeEeCCeEEEeecccc------------ccccCcEEEEECCCCcEE
Confidence            9875 33332221111 101111111112477888754322            134578999998888754