Citrus Sinensis ID: 016211

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---

MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQVTFKLFPFPS

ccEEccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHccccHHHHHHHccccccHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHcccEEEccccEEEEEEccccEEEEEEEcccEEEEccEEEEcccHHHHHHHHcccccccHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccccEEEEEcccccccccHHHHHHccccccc

ccEEcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHccccHHccHHHHHHHHHccHHHHHEcccccHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHcccEEEEcccEEEEEEcccccEEEEEEEccEEEEEEEEEEEcccHHHHHHccccHHcccHHHHHHHcccccEEEEEEEEEcccccccccccEEEcccccccEEHHHHHHcHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccHHHHccccccccccccccccccEEEEccccEcccccccEEEEEEccccc

mqgfwypfrNIFSLVDelgikpftgwmksaqyseeglevefpifqdlnqlptplgtlfytqfsrlplvdrltslplMAAVIDFDNTDVAWRKYDSITARELFKQFgcserlyrnvigplvqvglfapaeqCSAAATLGILYFIILAHQKnfdlvwcrgtlrekifepwmdsmrtrgcefldgrrvtdfiydeerccisdvvcgketysAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFdkkvtvpnvsnacsgfgdslaWTFFDLNKiydehkddsaTVIQADFyhanelmplkddQVVAKAVSYLSKCIKDFSTATVMDhkirrfpkslthffpgsykymmrgftsfpnlfmagdwittrhgswsqvtfklfpfps

MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREkifepwmdsmrtrgcefldgRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQVTFKLFPFPS

**GFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQVTFKLFP***

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		393	2.2.26 [Sep-21-2011]
P26294		474	15-cis-phytoene desaturas	yes	no	0.717	0.594	0.199	8e-09
Q31N27		481	Probable zeta-carotene de	no	no	0.941	0.769	0.213	3e-08
P29273		472	Phytoene dehydrogenase OS	N/A	no	0.913	0.760	0.192	4e-08
Q07356		566	15-cis-phytoene desaturas	yes	no	0.926	0.643	0.203	7e-08
P80093		582	15-cis-phytoene desaturas	N/A	no	0.936	0.632	0.184	1e-07
P49086		571	Phytoene dehydrogenase, c	N/A	no	0.715	0.492	0.193	8e-07
Q0DUI8		578	Phytoene dehydrogenase, c	no	no	0.936	0.636	0.195	9e-07
A2XDA1		578	Phytoene dehydrogenase, c	N/A	no	0.936	0.636	0.195	9e-07
Q9R6X4		479	Zeta-carotene desaturase	no	no	0.788	0.647	0.216	2e-06
P74306		489	Zeta-carotene desaturase	N/A	no	0.951	0.764	0.217	3e-06

>sp\|P26294\|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=1 SV=1	Back alignment and function desciption

 Score = 62.0 bits (149), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 134/296 (45%), Gaps = 14/296 (4%)

Query: 92  KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151
           + D  +  E  ++    ER+   V   + +   F   ++ SA   L  L    L  +K  
Sbjct: 145 EMDQYSWTEWLRKQNIPERVNDEVFIAMAKALNFIDPDEISATVVLTALNRF-LQEKKGS 203

Query: 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KET 206
            + +  G   E++ +P ++ ++ RG + L    + +F+ +++    +  + G     ++ 
Sbjct: 204 MMAFLDGAPPERLCQPIVEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQL 263

Query: 207 YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA 266
             A A V A+ +  L+ L+ ++       F ++  L  + V+++ LWFD+K+T  ++ + 
Sbjct: 264 IEADAYVSALPVDPLKLLLPDAWKA-MPYFQQLDGLQGVPVINIHLWFDRKLT--DIDHL 320

Query: 267 CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI 326
                  L+  + D++    E++D   ++++  F  A + +   D+ ++A  ++ + K  
Sbjct: 321 LFSRSPLLS-VYADMSNTCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLF 379

Query: 327 -KDFS---TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRH 378
            + FS    A +  +KI + P S+    PG  +Y     +   N F+ GD+   R+
Sbjct: 380 PQHFSGENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRY 435

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. Also active with phytofluene and 1,2-epoxyphytoene as substrates.
Synechococcus elongatus (strain PCC 7942) (taxid: 1140)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 5

>sp\|Q31N27\|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=zds PE=3 SV=1	Back alignment and function description

>sp\|P29273\|CRTI_SYNY3 Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pds PE=3 SV=2	Back alignment and function description

>sp\|Q07356\|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=1 SV=1	Back alignment and function description

>sp\|P80093\|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=1 SV=1	Back alignment and function description

>sp\|P49086\|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1	Back alignment and function description

>sp\|Q0DUI8\|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2	Back alignment and function description

>sp\|A2XDA1\|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2	Back alignment and function description

>sp\|Q9R6X4\|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=crtQ PE=3 SV=2	Back alignment and function description

>sp\|P74306\|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=crtQ PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		393
255560501		530	Phytoene dehydrogenase, putative [Ricinu	0.974	0.722	0.757	1e-177
359474834		530	PREDICTED: phytoene dehydrogenase-like [	0.974	0.722	0.75	1e-172
297744581		531	unnamed protein product [Vitis vinifera]	0.974	0.721	0.716	1e-165
449458684		533	PREDICTED: phytoene dehydrogenase-like [	0.974	0.718	0.677	1e-161
148910773		574	unknown [Picea sitchensis]	0.974	0.667	0.653	1e-158
302753308		530	hypothetical protein SELMODRAFT_74261 [S	0.974	0.722	0.606	1e-148
302804622		527	hypothetical protein SELMODRAFT_180688 [	0.974	0.726	0.606	1e-148
168030354		532	predicted protein [Physcomitrella patens	0.974	0.719	0.588	1e-144
116311132		529	B0103C08-B0602B01.15 [Oryza sativa Indic	0.974	0.724	0.578	1e-137
38345844		529	OSJNBa0084K11.8 [Oryza sativa Japonica G	0.974	0.724	0.575	1e-137

>gi\|255560501\|ref\|XP_002521265.1\| Phytoene dehydrogenase, putative [Ricinus communis] gi\|223539533\|gb\|EEF41121.1\| Phytoene dehydrogenase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 291/384 (75%), Positives = 332/384 (86%), Gaps = 1/384 (0%)

Query: 1   MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT 60
           +QGFW P++NIFSLV+ELGI PFT  ++SA YS EGLEVEFP+FQD  QLPTPLGTL+YT
Sbjct: 87  IQGFWNPYQNIFSLVNELGITPFTNRIRSALYSSEGLEVEFPVFQDQPQLPTPLGTLYYT 146

Query: 61  QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV 120
           QF+RLPLVDRLTSLPLMAAVIDFDNTD AWRKYDSITARELFKQFGCSE+LYRNV GPL+
Sbjct: 147 QFTRLPLVDRLTSLPLMAAVIDFDNTDTAWRKYDSITARELFKQFGCSEKLYRNVFGPLL 206

Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
           QVGLFAPAEQCSAAATLGILY+I LAHQK+FD+VWCRGT+REKIF PWMDS+RT+GC FL
Sbjct: 207 QVGLFAPAEQCSAAATLGILYYISLAHQKDFDMVWCRGTIREKIFSPWMDSLRTKGCRFL 266

Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKV 239
           DG +V DFI +EE  CI +VVC  ET +A AV+LAVGIS +QEL+KNS  L  REEFLKV
Sbjct: 267 DGEKVIDFIINEETSCIEEVVCSNETINADAVILAVGISKVQELVKNSAALSTREEFLKV 326

Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
           LNLA ID+++ KL  D+KV + + SNACSGF DS +WTFFDLN ++DEHKD+  T +QAD
Sbjct: 327 LNLAGIDILTCKLQLDRKVNLAHASNACSGFDDSFSWTFFDLNALHDEHKDNQVTTLQAD 386

Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR 359
           FYHANEL+PL D+ VV K +SYLSKCIKDF  A V+D +I RFPKSLTHFFPGSYK+MMR
Sbjct: 387 FYHANELLPLTDELVVTKTMSYLSKCIKDFENAVVIDKEISRFPKSLTHFFPGSYKHMMR 446

Query: 360 GFTSFPNLFMAGDWITTRHGSWSQ 383
           G TSFPNLFMAGDWI TRHGSWSQ
Sbjct: 447 GSTSFPNLFMAGDWIITRHGSWSQ 470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359474834\|ref\|XP_002278046.2\| PREDICTED: phytoene dehydrogenase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297744581\|emb\|CBI37843.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449458684\|ref\|XP_004147077.1\| PREDICTED: phytoene dehydrogenase-like [Cucumis sativus] gi\|449518113\|ref\|XP_004166088.1\| PREDICTED: phytoene dehydrogenase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|148910773\|gb\|ABR18453.1\| unknown [Picea sitchensis]	Back alignment and taxonomy information

>gi\|302753308\|ref\|XP_002960078.1\| hypothetical protein SELMODRAFT_74261 [Selaginella moellendorffii] gi\|300171017\|gb\|EFJ37617.1\| hypothetical protein SELMODRAFT_74261 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|302804622\|ref\|XP_002984063.1\| hypothetical protein SELMODRAFT_180688 [Selaginella moellendorffii] gi\|300148415\|gb\|EFJ15075.1\| hypothetical protein SELMODRAFT_180688 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|168030354\|ref\|XP_001767688.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162681008\|gb\|EDQ67439.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|116311132\|emb\|CAH68058.1\| B0103C08-B0602B01.15 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|38345844\|emb\|CAE01845.2\| OSJNBa0084K11.8 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		393
TAIR\|locus:2129515		566	PDS3 "phytoene desaturase 3" [	0.936	0.650	0.190	1.2e-07

TAIR\|locus:2129515 PDS3 "phytoene desaturase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 152 (58.6 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 73/384 (19%), Positives = 155/384 (40%)

Query:     4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
             F+  + N+ +L  ELGI     W + +  ++      EF  F   + LP PL  ++    
Sbjct:   149 FFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILR 208

Query:    61 QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
                 L   +++  ++ L+ A++            D ++ +E  ++ G  ER+   V   +
Sbjct:   209 NNEMLTWPEKIKFAIGLLPAMV---GGQAYVEAQDGLSVKEWMEKQGVPERVTDEVFIAM 265

Query:   120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
              +   F   ++ S    L I     L  +    + +  G   E++  P +D +R+ G E 
Sbjct:   266 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGEV 324

Query:   180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
                 R+     +++    S ++    T    A V A  +  L+ L+ +        F K+
Sbjct:   325 QLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYVFAAPVDILKLLLPDPWK-EIPYFKKL 383

Query:   240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
               L  + V++V +WFD+K+   N  +       +L   + D++    E+ D + ++++  
Sbjct:   384 DKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELV 441

Query:   300 FYHANELMPLKDDQVVAKAVSYLSKCIKDF-----STATVMDHKIRRFPKSLTHFFPGSY 354
             F  A E +   D  ++   +  L K   D      S A ++ + + + P+S+    P   
Sbjct:   442 FAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCE 501

Query:   355 KYMMRGFTSFPNLFMAGDWITTRH 378
                    +     ++AGD+   ++
Sbjct:   502 PCRPLQRSPIEGFYLAGDYTKQKY 525


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.440    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      393       393   0.00095  117 3  11 22  0.46    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  279 KB (2146 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.85u 0.09s 31.94t   Elapsed:  00:00:02
  Total cpu time:  31.85u 0.09s 31.94t   Elapsed:  00:00:02
  Start:  Fri May 10 17:18:56 2013   End:  Fri May 10 17:18:58 2013

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009536 "plastid" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		393
COG3349		485	COG3349, COG3349, Uncharacterized conserved protei	5e-67
TIGR03467		411	TIGR03467, HpnE, squalene-associated FAD-dependent	1e-11
pfam01593		444	pfam01593, Amino_oxidase, Flavin containing amine	3e-10
TIGR02731		453	TIGR02731, phytoene_desat, phytoene desaturase	3e-08
PRK07233		434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-07
TIGR02732		474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	3e-07
PLN02487		569	PLN02487, PLN02487, zeta-carotene desaturase	3e-04

>gnl\|CDD\|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

 Score =  219 bits (560), Expect = 5e-67
 Identities = 82/394 (20%), Positives = 140/394 (35%), Gaps = 17/394 (4%)

Query: 3   GFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF 62
            F+  + N+ +L+ EL I+     ++    +  G            +   P  T     F
Sbjct: 56  VFFGCYYNLLTLLKELPIE-DRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAF 114

Query: 63  SRLPLVDRLTSLPLMAAVIDFDN-TDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQ 121
            RLP + R   +  +  + D     D + R+ D I+  +  K+ G  E  Y+    P+  
Sbjct: 115 LRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIAL 174

Query: 122 VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD 181
              F   E CSA   L IL   ++   +   L   RG+  E + +PW + +  RG +   
Sbjct: 175 ALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHA 234

Query: 182 GRRVTDFIYDEERCCIS--DVVCGKETYSAGAVVLAVGISTLQELIKN--SILCNREEFL 237
              V +   D  R                  A +  V    +Q   ++  S       F 
Sbjct: 235 DYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFD 294

Query: 238 KVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIY--------DEHK 289
            +  L  + V+++ L FD  VT     N   G  D+L W+   L  +         D  +
Sbjct: 295 GLYGLRLVPVITLHLRFDGWVTELTDRNQQFGI-DNLLWSDDTLGGVVADLALTSPDYVE 353

Query: 290 DDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF 349
             +   ++         +   D+ +VA     L + +   + A +    +    +SL   
Sbjct: 354 PGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVN-QQSLYGL 412

Query: 350 FPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQ 383
            PGSY Y     T  PNL +AGD+        S 
Sbjct: 413 APGSYHYRPEQKTPIPNLLLAGDYTKQP-YLGSM 445

Length = 485

>gnl\|CDD\|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase	Back alignment and domain information

>gnl\|CDD\|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	Back alignment and domain information

>gnl\|CDD\|131778 TIGR02731, phytoene_desat, phytoene desaturase	Back alignment and domain information

>gnl\|CDD\|235977 PRK07233, PRK07233, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase	Back alignment and domain information

>gnl\|CDD\|215268 PLN02487, PLN02487, zeta-carotene desaturase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		393
PLN02487		569	zeta-carotene desaturase	100.0
TIGR02732		474	zeta_caro_desat carotene 7,8-desaturase. Carotene	100.0
PLN02612		567	phytoene desaturase	100.0
TIGR02731		453	phytoene_desat phytoene desaturase. Plants and cya	100.0
TIGR03467		419	HpnE squalene-associated FAD-dependent desaturase.	100.0
PRK07233		434	hypothetical protein; Provisional	100.0
COG1232		444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.98
PRK12416		463	protoporphyrinogen oxidase; Provisional	99.97
TIGR00562		462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.97
PRK11883		451	protoporphyrinogen oxidase; Reviewed	99.96
PLN02576		496	protoporphyrinogen oxidase	99.96
PRK07208		479	hypothetical protein; Provisional	99.96
COG3349		485	Uncharacterized conserved protein [Function unknow	99.96
TIGR02733		492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.89
PLN02268		435	probable polyamine oxidase	99.89
PLN02529		738	lysine-specific histone demethylase 1	99.84
TIGR02734		502	crtI_fam phytoene desaturase. Phytoene is converte	99.84
PLN02676		487	polyamine oxidase	99.82
PLN02568		539	polyamine oxidase	99.81
TIGR02730		493	carot_isom carotene isomerase. Members of this fam	99.81
PLN03000		881	amine oxidase	99.81
KOG1276		491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.8
PLN02328		808	lysine-specific histone demethylase 1 homolog	99.8
PF01593		450	Amino_oxidase: Flavin containing amine oxidoreduct	99.8
PLN02976		1713	amine oxidase	99.78
KOG4254		561	consensus Phytoene desaturase [Coenzyme transport	99.77
COG1231		450	Monoamine oxidase [Amino acid transport and metabo	99.75
COG2907		447	Predicted NAD/FAD-binding protein [General functio	99.73
COG1233		487	Phytoene dehydrogenase and related proteins [Secon	99.62
KOG0029		501	consensus Amine oxidase [Secondary metabolites bio	99.59
COG3380		331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.54
PTZ00363		443	rab-GDP dissociation inhibitor; Provisional	99.53
KOG0685		498	consensus Flavin-containing amine oxidase [Coenzym	99.5
PF00996		438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	99.1
PRK13977		576	myosin-cross-reactive antigen; Provisional	98.9
KOG1439		440	consensus RAB proteins geranylgeranyltransferase c	98.59
TIGR02352		337	thiamin_ThiO glycine oxidase ThiO. This family con	97.99
COG5044		434	MRS6 RAB proteins geranylgeranyltransferase compon	97.96
PRK00711		416	D-amino acid dehydrogenase small subunit; Validate	97.92
PF07156		368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	97.81
TIGR01373		407	soxB sarcosine oxidase, beta subunit family, heter	97.47
PF01266		358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.44
KOG4405		547	consensus GDP dissociation inhibitor [Signal trans	97.38
TIGR00031		377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.24
PF03486		409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.1
COG2081		408	Predicted flavoproteins [General function predicti	96.98
PF06100		500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.88
TIGR03378		419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.8
COG2509		486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.75
COG0579		429	Predicted dehydrogenase [General function predicti	96.38
TIGR02485		432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.35
PLN02464		627	glycerol-3-phosphate dehydrogenase	96.24
PTZ00383		497	malate:quinone oxidoreductase; Provisional	96.15
PRK08274		466	tricarballylate dehydrogenase; Validated	96.02
TIGR03862		376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.99
TIGR03329		460	Phn_aa_oxid putative aminophosphonate oxidoreducta	95.87
PF00890		417	FAD_binding_2: FAD binding domain of the Pfam fami	95.83
TIGR03197		381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.76
TIGR03377		516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	95.73
TIGR01377		380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.7
PF13738		203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.62
PRK11728		393	hydroxyglutarate oxidase; Provisional	95.62
PRK12845		564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.61
COG0578		532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	95.59
PRK11101		546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	95.47
PRK10157		428	putative oxidoreductase FixC; Provisional	95.47
TIGR00275		400	flavoprotein, HI0933 family. The model when search	95.42
PRK12844		557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.31
PRK06134		581	putative FAD-binding dehydrogenase; Reviewed	95.29
TIGR01816		565	sdhA_forward succinate dehydrogenase, flavoprotein	95.2
PRK04176		257	ribulose-1,5-biphosphate synthetase; Provisional	95.13
PRK12409		410	D-amino acid dehydrogenase small subunit; Provisio	95.11
PRK10015		429	oxidoreductase; Provisional	95.09
PRK11259		376	solA N-methyltryptophan oxidase; Provisional	95.03
TIGR01813		439	flavo_cyto_c flavocytochrome c. This model describ	94.99
PRK06175		433	L-aspartate oxidase; Provisional	94.96
PRK05329		422	anaerobic glycerol-3-phosphate dehydrogenase subun	94.93
PRK07121		492	hypothetical protein; Validated	94.89
PRK12835		584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.87
PRK06481		506	fumarate reductase flavoprotein subunit; Validated	94.8
TIGR01320		483	mal_quin_oxido malate:quinone-oxidoreductase. This	94.74
PRK09078		598	sdhA succinate dehydrogenase flavoprotein subunit;	94.65
PRK05675		570	sdhA succinate dehydrogenase flavoprotein subunit;	94.65
TIGR00292		254	thiazole biosynthesis enzyme. This enzyme is invol	94.62
PRK07843		557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.59
PRK08958		588	sdhA succinate dehydrogenase flavoprotein subunit;	94.45
PRK12843		578	putative FAD-binding dehydrogenase; Reviewed	94.43
KOG2820		399	consensus FAD-dependent oxidoreductase [General fu	94.37
PRK05257		494	malate:quinone oxidoreductase; Validated	94.29
PRK06847		375	hypothetical protein; Provisional	94.21
PF01134		392	GIDA: Glucose inhibited division protein A; InterP	94.2
PRK08401		466	L-aspartate oxidase; Provisional	94.15
TIGR01812		566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	94.11
PRK12842		574	putative succinate dehydrogenase; Reviewed	94.03
PRK05945		575	sdhA succinate dehydrogenase flavoprotein subunit;	94.03
PRK07573		640	sdhA succinate dehydrogenase flavoprotein subunit;	94.01
PF13454		156	NAD_binding_9: FAD-NAD(P)-binding	94.0
PRK12839		572	hypothetical protein; Provisional	93.88
PRK06452		566	sdhA succinate dehydrogenase flavoprotein subunit;	93.78
TIGR01811		603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	93.7
PRK06116		450	glutathione reductase; Validated	93.65
PRK07057		591	sdhA succinate dehydrogenase flavoprotein subunit;	93.64
COG1252		405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.61
PRK12834		549	putative FAD-binding dehydrogenase; Reviewed	93.48
PRK07512		513	L-aspartate oxidase; Provisional	93.34
PRK07333		403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.34
PF06039		488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	93.19
PF00732		296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	93.19
TIGR00551		488	nadB L-aspartate oxidase. L-aspartate oxidase is t	93.18
PRK07395		553	L-aspartate oxidase; Provisional	93.14
PRK07190		487	hypothetical protein; Provisional	93.11
PRK08773		392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.0
PTZ00139		617	Succinate dehydrogenase [ubiquinone] flavoprotein	92.94
PRK09564		444	coenzyme A disulfide reductase; Reviewed	92.93
TIGR03364		365	HpnW_proposed FAD dependent oxidoreductase TIGR033	92.93
TIGR02032		295	GG-red-SF geranylgeranyl reductase family. This mo	92.92
PF00070		80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.89
PRK07251		438	pyridine nucleotide-disulfide oxidoreductase; Prov	92.76
PRK06263		543	sdhA succinate dehydrogenase flavoprotein subunit;	92.65
PRK08626		657	fumarate reductase flavoprotein subunit; Provision	92.63
PRK04965		377	NADH:flavorubredoxin oxidoreductase; Provisional	92.56
PRK12837		513	3-ketosteroid-delta-1-dehydrogenase; Provisional	92.54
PLN00128		635	Succinate dehydrogenase [ubiquinone] flavoprotein	92.51
PRK13339		497	malate:quinone oxidoreductase; Reviewed	92.51
PRK12266		508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	92.51
PRK06416		462	dihydrolipoamide dehydrogenase; Reviewed	92.47
TIGR01984		382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	92.4
COG0644		396	FixC Dehydrogenases (flavoproteins) [Energy produc	92.37
PRK08275		554	putative oxidoreductase; Provisional	92.31
PRK08205		583	sdhA succinate dehydrogenase flavoprotein subunit;	92.3
PRK08010		441	pyridine nucleotide-disulfide oxidoreductase; Prov	92.3
PRK01747		662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	92.22
PRK05249		461	soluble pyridine nucleotide transhydrogenase; Prov	92.18
PRK14694		468	putative mercuric reductase; Provisional	92.16
PLN02507		499	glutathione reductase	91.98
PRK13369		502	glycerol-3-phosphate dehydrogenase; Provisional	91.96
PRK06834		488	hypothetical protein; Provisional	91.93
COG0665		387	DadA Glycine/D-amino acid oxidases (deaminating) [	91.92
PRK14727		479	putative mercuric reductase; Provisional	91.84
TIGR01350		461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	91.81
PRK07845		466	flavoprotein disulfide reductase; Reviewed	91.77
TIGR01424		446	gluta_reduc_2 glutathione-disulfide reductase, pla	91.75
PRK05714		405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	91.68
PRK09754		396	phenylpropionate dioxygenase ferredoxin reductase	91.65
PRK07804		541	L-aspartate oxidase; Provisional	91.57
KOG1336		478	consensus Monodehydroascorbate/ferredoxin reductas	91.56
TIGR01988		385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	91.42
PRK14989		847	nitrite reductase subunit NirD; Provisional	91.39
PRK09897		534	hypothetical protein; Provisional	91.32
TIGR01421		450	gluta_reduc_1 glutathione-disulfide reductase, ani	91.26
TIGR01423		486	trypano_reduc trypanothione-disulfide reductase. T	91.23
PRK08071		510	L-aspartate oxidase; Provisional	91.15
PRK06069		577	sdhA succinate dehydrogenase flavoprotein subunit;	91.14
PRK07803		626	sdhA succinate dehydrogenase flavoprotein subunit;	91.02
PRK06184		502	hypothetical protein; Provisional	90.93
PRK06854		608	adenylylsulfate reductase subunit alpha; Validated	90.87
PRK13748		561	putative mercuric reductase; Provisional	90.75
PRK07818		466	dihydrolipoamide dehydrogenase; Reviewed	90.53
KOG1346		659	consensus Programmed cell death 8 (apoptosis-induc	90.47
PLN02697		529	lycopene epsilon cyclase	90.32
PRK06912		458	acoL dihydrolipoamide dehydrogenase; Validated	90.19
TIGR03385		427	CoA_CoA_reduc CoA-disulfide reductase. Members of	90.17
PRK06327		475	dihydrolipoamide dehydrogenase; Validated	90.15
PRK08163		396	salicylate hydroxylase; Provisional	90.0
TIGR01176		580	fum_red_Fp fumarate reductase, flavoprotein subuni	89.93
PRK07045		388	putative monooxygenase; Reviewed	89.84
TIGR01292		300	TRX_reduct thioredoxin-disulfide reductase. This m	89.75
PTZ00318		424	NADH dehydrogenase-like protein; Provisional	89.74
KOG2844		856	consensus Dimethylglycine dehydrogenase precursor	89.66
TIGR02374		785	nitri_red_nirB nitrite reductase [NAD(P)H], large	89.61
PRK09231		582	fumarate reductase flavoprotein subunit; Validated	89.42
PTZ00052		499	thioredoxin reductase; Provisional	89.41
PLN02815		594	L-aspartate oxidase	89.28
PF04820		454	Trp_halogenase: Tryptophan halogenase; InterPro: I	89.26
TIGR01810		532	betA choline dehydrogenase. This enzyme is a membe	89.15
TIGR03140		515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	89.09
PRK07588		391	hypothetical protein; Provisional	88.97
PRK08020		391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	88.83
PRK05192		618	tRNA uridine 5-carboxymethylaminomethyl modificati	88.8
PTZ00306		1167	NADH-dependent fumarate reductase; Provisional	88.77
PRK06370		463	mercuric reductase; Validated	88.59
PRK07608		388	ubiquinone biosynthesis hydroxylase family protein	88.54
TIGR02462		544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	88.47
TIGR00136		617	gidA glucose-inhibited division protein A. GidA, t	88.32
PTZ00058		561	glutathione reductase; Provisional	88.27
PRK15317		517	alkyl hydroperoxide reductase subunit F; Provision	88.17
TIGR02053		463	MerA mercuric reductase. This model represents the	88.06
PRK05976		472	dihydrolipoamide dehydrogenase; Validated	88.03
TIGR01438		484	TGR thioredoxin and glutathione reductase selenopr	87.91
PRK06185		407	hypothetical protein; Provisional	87.76
PRK08641		589	sdhA succinate dehydrogenase flavoprotein subunit;	87.73
PRK09077		536	L-aspartate oxidase; Provisional	87.67
PRK09126		392	hypothetical protein; Provisional	87.63
COG0654		387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	87.56
COG1249		454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	87.47
PF01494		356	FAD_binding_3: FAD binding domain; InterPro: IPR00	87.09
PRK10262		321	thioredoxin reductase; Provisional	86.98
KOG0404		322	consensus Thioredoxin reductase [Posttranslational	86.86
TIGR01790		388	carotene-cycl lycopene cyclase family protein. Thi	86.79
PLN02463		447	lycopene beta cyclase	86.72
PRK06115		466	dihydrolipoamide dehydrogenase; Reviewed	86.61
PLN02172		461	flavin-containing monooxygenase FMO GS-OX	86.57
COG4716		587	Myosin-crossreactive antigen [Function unknown]	86.09
PRK05732		395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	86.0
PF05834		374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	85.91
PRK06617		374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	85.89
PRK07494		388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	85.79
KOG2404		477	consensus Fumarate reductase, flavoprotein subunit	85.49
PRK07846		451	mycothione reductase; Reviewed	85.29
KOG1335		506	consensus Dihydrolipoamide dehydrogenase [Energy p	85.27
PRK08850		405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	85.07
PLN02661		357	Putative thiazole synthesis	84.88
PRK04965		377	NADH:flavorubredoxin oxidoreductase; Provisional	84.87
TIGR01316		449	gltA glutamate synthase (NADPH), homotetrameric. T	84.86
PRK08013		400	oxidoreductase; Provisional	84.77
COG0562		374	Glf UDP-galactopyranose mutase [Cell envelope biog	84.5
PLN02546		558	glutathione reductase	84.49
TIGR02061		614	aprA adenosine phosphosulphate reductase, alpha su	84.39
TIGR03169		364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	84.35
PRK08244		493	hypothetical protein; Provisional	84.26
PF12831		428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	84.04
PRK08849		384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	83.45
PRK11749		457	dihydropyrimidine dehydrogenase subunit A; Provisi	83.4
PRK13512		438	coenzyme A disulfide reductase; Provisional	82.85
PRK12810		471	gltD glutamate synthase subunit beta; Reviewed	82.8
TIGR03452		452	mycothione_red mycothione reductase. Mycothiol, a	82.58
TIGR02374		785	nitri_red_nirB nitrite reductase [NAD(P)H], large	82.52
PRK09754		396	phenylpropionate dioxygenase ferredoxin reductase	82.39
TIGR03219		414	salicylate_mono salicylate 1-monooxygenase. Member	82.35
COG1635		262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	82.21
PRK02106		560	choline dehydrogenase; Validated	81.73
PRK07364		415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	81.37
PF01946		230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	81.19
PRK06183		538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	81.14
PRK12831		464	putative oxidoreductase; Provisional	80.96
PRK06996		398	hypothetical protein; Provisional	80.92
PRK08243		392	4-hydroxybenzoate 3-monooxygenase; Validated	80.75
PRK06126		545	hypothetical protein; Provisional	80.35
TIGR01318		467	gltD_gamma_fam glutamate synthase small subunit fa	80.32
COG0446		415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	80.13
PRK07236		386	hypothetical protein; Provisional	80.03

>PLN02487 zeta-carotene desaturase	Back alignment and domain information

Probab=100.00  E-value=5.2e-44  Score=344.46  Aligned_cols=383  Identities=20%  Similarity=0.255  Sum_probs=288.7

Q ss_pred             CcccCCCCchHHHHHHHhCCCCCCCccc-ceee-ccCCceeccccccCCCCCCCCcceec-cccCCCCCHhhhhcchhH-
Q 016211            1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQY-SEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPL-   76 (393)
Q Consensus         1 ~H~~~~~y~~~~~Ll~elG~~~~~~~~~-~~~~-~~~g~~~~~~~~~~~~~~~~p~~~~~-~~~~~~ls~~~k~~~~~~-   76 (393)
                      +|.|+++|+++++++++||+++...+.. ...+ ..+|+... ..+.  .+++.|++... +++++.+++.+|+++... 
T Consensus       129 ~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~-~~~~--~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l  205 (569)
T PLN02487        129 LHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGE-LDFR--FPVGAPLHGIKAFLTTNQLEPYDKARNALAL  205 (569)
T ss_pred             eeEecCCcHHHHHHHHhcCCcccccccccceeEEecCCEEee-eccC--CCCCchhhhHHHHHcCCCCCHHHHHhhcccc
Confidence            5899999999999999999987655443 3323 23444321 1121  13667776555 889999999999986422 


Q ss_pred             -----HHHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCc
Q 016211           77 -----MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF  151 (393)
Q Consensus        77 -----~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  151 (393)
                           +.++.+.+.....+..++++|+.+|+++++.+++++++||+|++.++++.+++++|+.+++.+|..+ ..+..++
T Consensus       206 ~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~-~~~~~~~  284 (569)
T PLN02487        206 ATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLF-ATKTEAS  284 (569)
T ss_pred             cccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-hhcCCcc
Confidence                 1111111101234556788999999999987788999999999999999999999999999988653 2244456


Q ss_pred             ceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCC-C--eEEEEEe--C--CeEEecCEEEEecChhhHHHH
Q 016211          152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-C--CISDVVC--G--KETYSAGAVVLAVGISTLQEL  224 (393)
Q Consensus       152 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~-~--~v~~v~~--~--g~~~~ad~VI~a~p~~~~~~L  224 (393)
                      +++|++||+++.|++++++.|+++|++|+++++|++|..++++ |  ++++|++  +  ++++.||+||+|+|++.+.+|
T Consensus       285 ~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L  364 (569)
T PLN02487        285 LLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL  364 (569)
T ss_pred             eeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence            7999999999778899999999999999999999999997421 2  3778887  3  457899999999999999999


Q ss_pred             hhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCc------ceeecCC-----Cccc-cceehhhhcc-cc-cC
Q 016211          225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFGD-----SLAW-TFFDLNKIYD-EH-KD  290 (393)
Q Consensus       225 l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~------~~~~~~~-----~~~~-~~~~~~~~~~-~~-~~  290 (393)
                      +++.. ...+.++++.++.+.++++++|+||++...+...+      .+.+++.     ...+ +++++....+ .+ .+
T Consensus       365 lp~~~-~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~  443 (569)
T PLN02487        365 LPEQW-REYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKE  443 (569)
T ss_pred             CCchh-hccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHccc
Confidence            98863 23455788999989999999999998766432110      1222221     1112 2234321111 12 22


Q ss_pred             CCCcEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEe
Q 016211          291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMA  370 (393)
Q Consensus       291 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~la  370 (393)
                      .+++++.+++++++++..++++|++++++++|.++||..++.++.++++.+.+++++.+.||+...||.++|+++|||+|
T Consensus       444 ~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LA  523 (569)
T PLN02487        444 GEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLA  523 (569)
T ss_pred             CCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEe
Confidence            34678888888888899999999999999999999998766578888999999999999999988889999999999999


Q ss_pred             ccccccCCC-----c-cccchhcc
Q 016211          371 GDWITTRHG-----S-WSQVTFKL  388 (393)
Q Consensus       371 Gd~~~~~~g-----a-~s~~~a~~  388 (393)
                      ||||.+.++     | +||.+||.
T Consensus       524 GD~t~~~yPat~EgAv~SG~~AA~  547 (569)
T PLN02487        524 GSYTKQDYIDSMEGATLSGRQAAA  547 (569)
T ss_pred             CcccccCCcchHHHHHHHHHHHHH
Confidence            999998554     5 67777764

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase	Back alignment and domain information

>PLN02612 phytoene desaturase	Back alignment and domain information

>TIGR02731 phytoene_desat phytoene desaturase	Back alignment and domain information

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase	Back alignment and domain information

>PRK07233 hypothetical protein; Provisional	Back alignment and domain information

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]	Back alignment and domain information

>PRK12416 protoporphyrinogen oxidase; Provisional	Back alignment and domain information

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase	Back alignment and domain information

>PRK11883 protoporphyrinogen oxidase; Reviewed	Back alignment and domain information

>PLN02576 protoporphyrinogen oxidase	Back alignment and domain information

>PRK07208 hypothetical protein; Provisional	Back alignment and domain information

>COG3349 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD	Back alignment and domain information

>PLN02268 probable polyamine oxidase	Back alignment and domain information

>PLN02529 lysine-specific histone demethylase 1	Back alignment and domain information

>TIGR02734 crtI_fam phytoene desaturase	Back alignment and domain information

>PLN02676 polyamine oxidase	Back alignment and domain information

>PLN02568 polyamine oxidase	Back alignment and domain information

>TIGR02730 carot_isom carotene isomerase	Back alignment and domain information

>PLN03000 amine oxidase	Back alignment and domain information

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]	Back alignment and domain information

>PLN02328 lysine-specific histone demethylase 1 homolog	Back alignment and domain information

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)	Back alignment and domain information

>PLN02976 amine oxidase	Back alignment and domain information

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]	Back alignment and domain information

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]	Back alignment and domain information

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]	Back alignment and domain information

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]	Back alignment and domain information

>PTZ00363 rab-GDP dissociation inhibitor; Provisional	Back alignment and domain information

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]	Back alignment and domain information

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function	Back alignment and domain information

>PRK13977 myosin-cross-reactive antigen; Provisional	Back alignment and domain information

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02352 thiamin_ThiO glycine oxidase ThiO	Back alignment and domain information

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK00711 D-amino acid dehydrogenase small subunit; Validated	Back alignment and domain information

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1	Back alignment and domain information

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form	Back alignment and domain information

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1	Back alignment and domain information

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase	Back alignment and domain information

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases	Back alignment and domain information

>COG2081 Predicted flavoproteins [General function prediction only]	Back alignment and domain information

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []	Back alignment and domain information

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit	Back alignment and domain information

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]	Back alignment and domain information

>COG0579 Predicted dehydrogenase [General function prediction only]	Back alignment and domain information

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ	Back alignment and domain information

>PLN02464 glycerol-3-phosphate dehydrogenase	Back alignment and domain information

>PTZ00383 malate:quinone oxidoreductase; Provisional	Back alignment and domain information

>PRK08274 tricarballylate dehydrogenase; Validated	Back alignment and domain information

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family	Back alignment and domain information

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase	Back alignment and domain information

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family	Back alignment and domain information

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain	Back alignment and domain information

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit	Back alignment and domain information

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form	Back alignment and domain information

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A	Back alignment and domain information

>PRK11728 hydroxyglutarate oxidase; Provisional	Back alignment and domain information

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed	Back alignment and domain information

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	Back alignment and domain information

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional	Back alignment and domain information

>PRK10157 putative oxidoreductase FixC; Provisional	Back alignment and domain information

>TIGR00275 flavoprotein, HI0933 family	Back alignment and domain information

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed	Back alignment and domain information

>PRK06134 putative FAD-binding dehydrogenase; Reviewed	Back alignment and domain information

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E	Back alignment and domain information

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional	Back alignment and domain information

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional	Back alignment and domain information

>PRK10015 oxidoreductase; Provisional	Back alignment and domain information

>PRK11259 solA N-methyltryptophan oxidase; Provisional	Back alignment and domain information

>TIGR01813 flavo_cyto_c flavocytochrome c	Back alignment and domain information

>PRK06175 L-aspartate oxidase; Provisional	Back alignment and domain information

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated	Back alignment and domain information

>PRK07121 hypothetical protein; Validated	Back alignment and domain information

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed	Back alignment and domain information

>PRK06481 fumarate reductase flavoprotein subunit; Validated	Back alignment and domain information

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase	Back alignment and domain information

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>TIGR00292 thiazole biosynthesis enzyme	Back alignment and domain information

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed	Back alignment and domain information

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PRK12843 putative FAD-binding dehydrogenase; Reviewed	Back alignment and domain information

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]	Back alignment and domain information

>PRK05257 malate:quinone oxidoreductase; Validated	Back alignment and domain information

>PRK06847 hypothetical protein; Provisional	Back alignment and domain information

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria	Back alignment and domain information

>PRK08401 L-aspartate oxidase; Provisional	Back alignment and domain information

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup	Back alignment and domain information

>PRK12842 putative succinate dehydrogenase; Reviewed	Back alignment and domain information

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PF13454 NAD_binding_9: FAD-NAD(P)-binding	Back alignment and domain information

>PRK12839 hypothetical protein; Provisional	Back alignment and domain information

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup	Back alignment and domain information

>PRK06116 glutathione reductase; Validated	Back alignment and domain information

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	Back alignment and domain information

>PRK12834 putative FAD-binding dehydrogenase; Reviewed	Back alignment and domain information

>PRK07512 L-aspartate oxidase; Provisional	Back alignment and domain information

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional	Back alignment and domain information

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle	Back alignment and domain information

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]	Back alignment and domain information

>TIGR00551 nadB L-aspartate oxidase	Back alignment and domain information

>PRK07395 L-aspartate oxidase; Provisional	Back alignment and domain information

>PRK07190 hypothetical protein; Provisional	Back alignment and domain information

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated	Back alignment and domain information

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional	Back alignment and domain information

>PRK09564 coenzyme A disulfide reductase; Reviewed	Back alignment and domain information

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364	Back alignment and domain information

>TIGR02032 GG-red-SF geranylgeranyl reductase family	Back alignment and domain information

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Back alignment and domain information

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional	Back alignment and domain information

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PRK08626 fumarate reductase flavoprotein subunit; Provisional	Back alignment and domain information

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional	Back alignment and domain information

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional	Back alignment and domain information

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit	Back alignment and domain information

>PRK13339 malate:quinone oxidoreductase; Reviewed	Back alignment and domain information

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed	Back alignment and domain information

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed	Back alignment and domain information

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase	Back alignment and domain information

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]	Back alignment and domain information

>PRK08275 putative oxidoreductase; Provisional	Back alignment and domain information

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional	Back alignment and domain information

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed	Back alignment and domain information

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional	Back alignment and domain information

>PRK14694 putative mercuric reductase; Provisional	Back alignment and domain information

>PLN02507 glutathione reductase	Back alignment and domain information

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional	Back alignment and domain information

>PRK06834 hypothetical protein; Provisional	Back alignment and domain information

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14727 putative mercuric reductase; Provisional	Back alignment and domain information

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase	Back alignment and domain information

>PRK07845 flavoprotein disulfide reductase; Reviewed	Back alignment and domain information

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant	Back alignment and domain information

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional	Back alignment and domain information

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	Back alignment and domain information

>PRK07804 L-aspartate oxidase; Provisional	Back alignment and domain information

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]	Back alignment and domain information

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	Back alignment and domain information

>PRK14989 nitrite reductase subunit NirD; Provisional	Back alignment and domain information

>PRK09897 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial	Back alignment and domain information

>TIGR01423 trypano_reduc trypanothione-disulfide reductase	Back alignment and domain information

>PRK08071 L-aspartate oxidase; Provisional	Back alignment and domain information

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PRK06184 hypothetical protein; Provisional	Back alignment and domain information

>PRK06854 adenylylsulfate reductase subunit alpha; Validated	Back alignment and domain information

>PRK13748 putative mercuric reductase; Provisional	Back alignment and domain information

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed	Back alignment and domain information

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]	Back alignment and domain information

>PLN02697 lycopene epsilon cyclase	Back alignment and domain information

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated	Back alignment and domain information

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase	Back alignment and domain information

>PRK06327 dihydrolipoamide dehydrogenase; Validated	Back alignment and domain information

>PRK08163 salicylate hydroxylase; Provisional	Back alignment and domain information

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit	Back alignment and domain information

>PRK07045 putative monooxygenase; Reviewed	Back alignment and domain information

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase	Back alignment and domain information

>PTZ00318 NADH dehydrogenase-like protein; Provisional	Back alignment and domain information

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit	Back alignment and domain information

>PRK09231 fumarate reductase flavoprotein subunit; Validated	Back alignment and domain information

>PTZ00052 thioredoxin reductase; Provisional	Back alignment and domain information

>PLN02815 L-aspartate oxidase	Back alignment and domain information

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan	Back alignment and domain information

>TIGR01810 betA choline dehydrogenase	Back alignment and domain information

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit	Back alignment and domain information

>PRK07588 hypothetical protein; Provisional	Back alignment and domain information

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed	Back alignment and domain information

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated	Back alignment and domain information

>PTZ00306 NADH-dependent fumarate reductase; Provisional	Back alignment and domain information

>PRK06370 mercuric reductase; Validated	Back alignment and domain information

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional	Back alignment and domain information

>TIGR02462 pyranose_ox pyranose oxidase	Back alignment and domain information

>TIGR00136 gidA glucose-inhibited division protein A	Back alignment and domain information

>PTZ00058 glutathione reductase; Provisional	Back alignment and domain information

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional	Back alignment and domain information

>TIGR02053 MerA mercuric reductase	Back alignment and domain information

>PRK05976 dihydrolipoamide dehydrogenase; Validated	Back alignment and domain information

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein	Back alignment and domain information

>PRK06185 hypothetical protein; Provisional	Back alignment and domain information

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed	Back alignment and domain information

>PRK09077 L-aspartate oxidase; Provisional	Back alignment and domain information

>PRK09126 hypothetical protein; Provisional	Back alignment and domain information

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	Back alignment and domain information

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	Back alignment and domain information

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways	Back alignment and domain information

>PRK10262 thioredoxin reductase; Provisional	Back alignment and domain information

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01790 carotene-cycl lycopene cyclase family protein	Back alignment and domain information

>PLN02463 lycopene beta cyclase	Back alignment and domain information

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed	Back alignment and domain information

>PLN02172 flavin-containing monooxygenase FMO GS-OX	Back alignment and domain information

>COG4716 Myosin-crossreactive antigen [Function unknown]	Back alignment and domain information

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	Back alignment and domain information

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins	Back alignment and domain information

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	Back alignment and domain information

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional	Back alignment and domain information

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]	Back alignment and domain information

>PRK07846 mycothione reductase; Reviewed	Back alignment and domain information

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]	Back alignment and domain information

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated	Back alignment and domain information

>PLN02661 Putative thiazole synthesis	Back alignment and domain information

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional	Back alignment and domain information

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric	Back alignment and domain information

>PRK08013 oxidoreductase; Provisional	Back alignment and domain information

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PLN02546 glutathione reductase	Back alignment and domain information

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit	Back alignment and domain information

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein	Back alignment and domain information

>PRK08244 hypothetical protein; Provisional	Back alignment and domain information

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A	Back alignment and domain information

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional	Back alignment and domain information

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional	Back alignment and domain information

>PRK13512 coenzyme A disulfide reductase; Provisional	Back alignment and domain information

>PRK12810 gltD glutamate synthase subunit beta; Reviewed	Back alignment and domain information

>TIGR03452 mycothione_red mycothione reductase	Back alignment and domain information

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit	Back alignment and domain information

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	Back alignment and domain information

>TIGR03219 salicylate_mono salicylate 1-monooxygenase	Back alignment and domain information

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK02106 choline dehydrogenase; Validated	Back alignment and domain information

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	Back alignment and domain information

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K	Back alignment and domain information

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated	Back alignment and domain information

>PRK12831 putative oxidoreductase; Provisional	Back alignment and domain information

>PRK06996 hypothetical protein; Provisional	Back alignment and domain information

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated	Back alignment and domain information

>PRK06126 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial	Back alignment and domain information

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	Back alignment and domain information

>PRK07236 hypothetical protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		393
3i6d_A		470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-11
2ivd_A		478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-08
3lov_A		475	Protoporphyrinogen oxidase; structural genomics, J	3e-08
1sez_A		504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-05
2jae_A		489	L-amino acid oxidase; oxidoreductase, dimerisation	3e-05
1s3e_A		520	Amine oxidase [flavin-containing] B; human monoami	1e-04
2iid_A		498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	2e-04
2yg5_A		453	Putrescine oxidase; oxidoreductase, flavin; HET: F	4e-04

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470	Back alignment and structure

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 62/400 (15%), Positives = 131/400 (32%), Gaps = 62/400 (15%)

Query: 9   RNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLV 68
           ++   LV +LG++       + Q           +  +    P P G +        P V
Sbjct: 72  KSAPQLVKDLGLEHLLVNNATGQ---------SYVLVNRTLHPMPKGAVMGIPTKIAPFV 122

Query: 69  DRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFK-QFGCSERLYRNVIGPLVQVGLFAP 127
                     A    D    A +  D  +  E F+ + G  + +  N+I PL+       
Sbjct: 123 STGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRVG--DEVVENLIEPLLSGIYAGD 180

Query: 128 AEQCSAAATLGILY-------FIILAHQKNFDLVWCRGTLREKI-----FEPWMDSMRTR 175
            ++ S  +T    Y        +IL  +K       +    +K          + ++   
Sbjct: 181 IDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEE 240

Query: 176 GCEFLD------GRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSI 229
             + L       G +VT   +      +   +    T  A +V++         ++    
Sbjct: 241 IEKQLKLTKVYKGTKVTKLSHSGSCYSL--ELDNGVTLDADSVIVTAPHKAAAGMLSELP 298

Query: 230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS---------LAWTFFD 280
                  LK ++  S+  V+  L F +     +V     G G            A T+  
Sbjct: 299 A---ISHLKNMHSTSVANVA--LGFPE----GSVQMEHEGTGFVISRNSDFAITACTWT- 348

Query: 281 LNKIYDEHKDDSATVIQADFYHAN--ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHK 338
            NK +     +  T+++A    A    ++ L D+ ++   +  L K +            
Sbjct: 349 -NKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNI--NGEPEMTC 405

Query: 339 IRRFPKSLTHFFPGSYKYMMRGF-----TSFPNLFMAGDW 373
           + R+ +S+  +  G +K  ++       +++P ++M G  
Sbjct: 406 VTRWHESMPQYHVG-HKQRIKELREALASAYPGVYMTGAS 444

PyMOL of 3i6d

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478	Back alignment and structure

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475	Back alignment and structure

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504	Back alignment and structure

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489	Back alignment and structure

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520	Back alignment and structure

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498	Back alignment and structure

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		393
3ka7_A		425	Oxidoreductase; structural genomics, PSI-2, protei	99.98
3i6d_A		470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.96
3nks_A		477	Protoporphyrinogen oxidase; FAD containing protein	99.96
3lov_A		475	Protoporphyrinogen oxidase; structural genomics, J	99.96
3nrn_A		421	Uncharacterized protein PF1083; alpha-beta protein	99.95
2ivd_A		478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.95
1sez_A		504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.94
1s3e_A		520	Amine oxidase [flavin-containing] B; human monoami	99.94
2yg5_A		453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.93
2vvm_A		495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.91
4dsg_A		484	UDP-galactopyranose mutase; rossmann fold, flavin	99.9
4gde_A		513	UDP-galactopyranose mutase; flavin adenine dinucle	99.89
4dgk_A		501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.89
1b37_A		472	Protein (polyamine oxidase); flavin-dependent amin	99.84
3qj4_A		342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.83
3k7m_X		431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.78
2iid_A		498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.75
2jae_A		489	L-amino acid oxidase; oxidoreductase, dimerisation	99.75
3p1w_A		475	Rabgdi protein; GDI RAB, malaria, structural genom	99.73
2z3y_A		662	Lysine-specific histone demethylase 1; chromatin,	99.72
2xag_A		852	Lysine-specific histone demethylase 1; amine oxida	99.71
2b9w_A		424	Putative aminooxidase; isomerase, conjugated linol	99.71
4gut_A		776	Lysine-specific histone demethylase 1B; histone de	99.66
1rsg_A		516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.65
1vg0_A		650	RAB proteins geranylgeranyltransferase component A	99.59
1yvv_A		336	Amine oxidase, flavin-containing; oxidoreductase,	99.49
1d5t_A		433	Guanine nucleotide dissociation inhibitor; ultra-h	99.47
3ayj_A		721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.46
2bcg_G		453	Secretory pathway GDP dissociation inhibitor; RABG	99.42
3hdq_A		397	UDP-galactopyranose mutase; substrate and inhibito	99.16
1i8t_A		367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.12
1v0j_A		399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.11
2bi7_A		384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.06
2e1m_C		181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.23
1ryi_A		382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.66
2e1m_A		376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.6
2gag_B		405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.53
2e1m_B		130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.37
3dme_A		369	Conserved exported protein; structural genomics, P	97.34
3dje_A		438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.21
3da1_A		561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.16
3nyc_A		381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	96.94
1y56_B		382	Sarcosine oxidase; dehydrogenase, protein-protein	96.85
2i0z_A		447	NAD(FAD)-utilizing dehydrogenases; structural geno	96.68
3nlc_A		549	Uncharacterized protein VP0956; FAD-binding protei	96.58
3axb_A		448	Putative oxidoreductase; dinucleotide-binding fold	96.54
3fg2_P		404	Putative rubredoxin reductase; ferredoxin reductas	96.5
3lxd_A		415	FAD-dependent pyridine nucleotide-disulphide oxido	96.47
1pj5_A		830	N,N-dimethylglycine oxidase; channelling, FAD bind	96.37
2oln_A		397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.31
3v76_A		417	Flavoprotein; structural genomics, PSI-biology, NE	96.27
2uzz_A		372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.27
2gf3_A		389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.21
4at0_A		510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.19
3ps9_A		676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.13
1y0p_A		571	Fumarate reductase flavoprotein subunit; flavocyto	96.0
2cdu_A		452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.99
3pvc_A		689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.94
2rgh_A		571	Alpha-glycerophosphate oxidase; flavoprotein oxida	95.89
1qo8_A		566	Flavocytochrome C3 fumarate reductase; oxidoreduct	95.76
1d4d_A		572	Flavocytochrome C fumarate reductase; oxidoreducta	95.73
3cgv_A		397	Geranylgeranyl reductase related protein; NP_39399	95.73
3iwa_A		472	FAD-dependent pyridine nucleotide-disulphide oxido	95.58
2gqf_A		401	Hypothetical protein HI0933; structural genomics,	95.5
2cul_A		232	Glucose-inhibited division protein A-related PROT	95.45
3atr_A		453	Conserved archaeal protein; saturating double bond	95.43
1q1r_A		431	Putidaredoxin reductase; glutathione reductase fol	95.41
3oc4_A		452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.39
3c4n_A		405	Uncharacterized protein DR_0571; alpha-beta protei	95.15
2qcu_A		501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	95.09
2gmh_A		584	Electron transfer flavoprotein-ubiquinone oxidored	95.09
3ef6_A		410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.08
2ywl_A		180	Thioredoxin reductase related protein; uncharacter	95.0
1mo9_A		523	ORF3; nucleotide binding motifs, nucleotide bindin	94.95
3o0h_A		484	Glutathione reductase; ssgcid, structur genomics,	94.92
1trb_A		320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.92
1xdi_A		499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	94.91
2v3a_A		384	Rubredoxin reductase; alkane degradation, NADH oxi	94.82
3e1t_A		512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	94.8
1n4w_A		504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	94.8
2e4g_A		550	Tryptophan halogenase; flavin-binding, rebeccamyci	94.79
2wpf_A		495	Trypanothione reductase; oxidoreductase, trypanoso	94.73
3nix_A		421	Flavoprotein/dehydrogenase; structural genomics, P	94.66
1zk7_A		467	HGII, reductase, mercuric reductase; mercuric ION	94.65
1fec_A		490	Trypanothione reductase; redox-active center, oxid	94.6
2weu_A		511	Tryptophan 5-halogenase; regioselectivity, antifun	94.59
2x3n_A		399	Probable FAD-dependent monooxygenase; oxidoreducta	94.59
2hqm_A		479	GR, grase, glutathione reductase; glutathione redu	94.55
2wdq_A		588	Succinate dehydrogenase flavoprotein subunit; succ	94.52
2bs2_A		660	Quinol-fumarate reductase flavoprotein subunit A;	94.49
1m6i_A		493	Programmed cell death protein 8; apoptosis, AIF, o	94.48
2bc0_A		490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.4
2h88_A		621	Succinate dehydrogenase flavoprotein subunit; comp	94.38
1rp0_A		284	ARA6, thiazole biosynthetic enzyme; protein ligand	94.37
4dna_A		463	Probable glutathione reductase; structural genomic	94.34
2yqu_A		455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.23
1ges_A		450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.16
3cgb_A		480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.11
4a9w_A		357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.05
1coy_A		507	Cholesterol oxidase; oxidoreductase(oxygen recepto	94.0
2zxi_A		637	TRNA uridine 5-carboxymethylaminomethyl modificat	93.92
3ces_A		651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	93.65
2aqj_A		538	Tryptophan halogenase, pRNA; flavin-dependent halo	93.62
3itj_A		338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.62
1nhp_A		447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	93.56
1onf_A		500	GR, grase, glutathione reductase; oxidoreductase;	93.4
1kf6_A		602	Fumarate reductase flavoprotein; respiration, fuma	93.32
3lad_A		476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.32
2r9z_A		463	Glutathione amide reductase; NAD, FAD, substrate s	93.3
3cty_A		319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.24
3ab1_A		360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.24
3i3l_A		591	Alkylhalidase CMLS; flavin-dependent halogenase, c	93.18
3ihg_A		535	RDME; flavoenzyme, anthracycline, polyketide biosy	93.13
3ntd_A		565	FAD-dependent pyridine nucleotide-disulphide oxido	93.13
2pyx_A		526	Tryptophan halogenase; structural genomics, JOI fo	93.02
2eq6_A		464	Pyruvate dehydrogenase complex, dihydrolipoamide d	92.98
2e5v_A		472	L-aspartate oxidase; archaea, oxidoreductase; HET:	92.92
3d1c_A		369	Flavin-containing putative monooxygenase; NP_37310	92.9
3alj_A		379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	92.86
2gqw_A		408	Ferredoxin reductase; flavoprotein, oxidoreductase	92.81
2qae_A		468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	92.8
1k0i_A		394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	92.75
3kkj_A		336	Amine oxidase, flavin-containing; oxidoreductase,	92.5
2a8x_A		464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.5
3ics_A		588	Coenzyme A-disulfide reductase; pyridine nucleotid	92.29
1chu_A		540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	92.28
3r9u_A		315	Thioredoxin reductase; structural genomics, center	92.24
1ojt_A		482	Surface protein; redox-active center, glycolysis,	92.22
2qa2_A		499	CABE, polyketide oxygenase CABE; FAD, angucycline,	92.11
1zmd_A		474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	92.08
1ebd_A		455	E3BD, dihydrolipoamide dehydrogenase; redox-active	92.03
3dgh_A		483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	91.88
2qa1_A		500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	91.87
3urh_A		491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	91.86
2bry_A		497	NEDD9 interacting protein with calponin homology a	91.82
1v59_A		478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	91.7
3rp8_A		407	Flavoprotein monooxygenase; FAD-binding protein, o	91.63
2zbw_A		335	Thioredoxin reductase; redox protein, oxidoreducta	91.63
3dk9_A		478	Grase, GR, glutathione reductase; flavoenzyme, nic	91.62
3h8l_A		409	NADH oxidase; membrane protein, complete form, ros	91.57
3lzw_A		332	Ferredoxin--NADP reductase 2; ferredoxin reductase	91.41
3h28_A		430	Sulfide-quinone reductase; monotopic membrane prot	91.24
3cp8_A		641	TRNA uridine 5-carboxymethylaminomethyl modificati	91.13
1jnr_A		643	Adenylylsulfate reductase; oxidoreductase; HET: FA	91.12
1dxl_A		470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	91.04
3fmw_A		570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	91.01
1vdc_A		333	NTR, NADPH dependent thioredoxin reductase; hypoth	90.97
3gwf_A		540	Cyclohexanone monooxygenase; flavoprotein biocatal	90.85
4ap3_A		549	Steroid monooxygenase; oxidoreductase, baeyer-vill	90.81
3k30_A		690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.47
3ab1_A		360	Ferredoxin--NADP reductase; oxidoreductase, electr	90.42
2zbw_A		335	Thioredoxin reductase; redox protein, oxidoreducta	90.41
3klj_A		385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	90.31
4b1b_A		542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	90.15
4g6h_A		502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	90.09
1fl2_A		310	Alkyl hydroperoxide reductase subunit F; reactive	90.06
3gyx_A		662	Adenylylsulfate reductase; oxidoreductase; HET: FA	89.97
1y56_A		493	Hypothetical protein PH1363; dehydrogenase, protei	89.93
1kdg_A		546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	89.9
1fl2_A		310	Alkyl hydroperoxide reductase subunit F; reactive	89.88
2xve_A		464	Flavin-containing monooxygenase; oxidoreductase; H	89.71
2vou_A		397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	89.39
3ic9_A		492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	89.39
3lzw_A		332	Ferredoxin--NADP reductase 2; ferredoxin reductase	89.39
3dgz_A		488	Thioredoxin reductase 2; oxidoreductase, rossmann,	89.22
3jsk_A		344	Cypbp37 protein; octameric thiazole synthase, bios	89.18
2gv8_A		447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	89.16
3kd9_A		449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	89.13
2q0l_A		311	TRXR, thioredoxin reductase; bacterial thiredoxin	89.11
3oz2_A		397	Digeranylgeranylglycerophospholipid reductase; str	89.07
3uox_A		545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	88.82
2gjc_A		326	Thiazole biosynthetic enzyme, mitochondrial; gluta	88.65
3s5w_A		463	L-ornithine 5-monooxygenase; class B flavin depend	88.49
2q0l_A		311	TRXR, thioredoxin reductase; bacterial thiredoxin	87.81
3sx6_A		437	Sulfide-quinone reductase, putative; sulfide:quino	87.8
2jbv_A		546	Choline oxidase; alcohol oxidation, flavoenyzme ox	87.54
1hyu_A		521	AHPF, alkyl hydroperoxide reductase subunit F; thi	87.24
1vdc_A		333	NTR, NADPH dependent thioredoxin reductase; hypoth	86.89
3pl8_A		623	Pyranose 2-oxidase; substrate complex, H167A mutan	86.72
2xdo_A		398	TETX2 protein; tetracycline degradation, tigecycli	86.7
3f8d_A		323	Thioredoxin reductase (TRXB-3); redox protein, nuc	86.47
3itj_A		338	Thioredoxin reductase 1; disulfide B flavoprotein,	86.4
1lvl_A		458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	86.36
1w4x_A		542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	86.24
2q7v_A		325	Thioredoxin reductase; rossman fold, FAD, flavopro	86.21
4eqs_A		437	Coenzyme A disulfide reductase; oxidoreductase; HE	86.1
3cty_A		319	Thioredoxin reductase; FAD, oxidoreductase, flavin	86.07
3c96_A		410	Flavin-containing monooxygenase; FAD, oxidoreducta	86.0
3s5w_A		463	L-ornithine 5-monooxygenase; class B flavin depend	85.63
3f8d_A		323	Thioredoxin reductase (TRXB-3); redox protein, nuc	85.43
1xhc_A		367	NADH oxidase /nitrite reductase; southe collaborat	85.15
3hyw_A		430	Sulfide-quinone reductase; monotopic membrane prot	84.58
3d1c_A		369	Flavin-containing putative monooxygenase; NP_37310	83.79
1trb_A		320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	83.57
3vrd_B		401	FCCB subunit, flavocytochrome C flavin subunit; su	83.42
3fbs_A		297	Oxidoreductase; structural genomics, PSI2, MCSG, p	82.49
2dkh_A		639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	82.11
3qvp_A		583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	81.43
2r0c_A		549	REBC; flavin adenine dinucleotide, monooxygenase,	81.32
2q7v_A		325	Thioredoxin reductase; rossman fold, FAD, flavopro	81.03
1ps9_A		671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	81.01
4hb9_A		412	Similarities with probable monooxygenase; flavin,	80.88
1xhc_A		367	NADH oxidase /nitrite reductase; southe collaborat	80.39

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}	Back alignment and structure

Probab=99.98  E-value=1.9e-29  Score=240.19  Aligned_cols=301  Identities=12%  Similarity=0.084  Sum_probs=221.8

Q ss_pred             CCCHhhhhcchhHHHHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHH
Q 016211           64 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI  143 (393)
Q Consensus        64 ~ls~~~k~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~  143 (393)
                      .+++.++.++...+.....        ...+++|+.+|++++ ++++.++.++.+++...++.+++++|+..++..+...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  182 (425)
T 3ka7_A          112 LLSYKDRMKIALLIVSTRK--------NRPSGSSLQAWIKSQ-VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENM  182 (425)
T ss_dssp             GSCHHHHHHHHHHHHHTTT--------SCCCSSBHHHHHHHH-CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhhhh--------cCCCCCCHHHHHHHh-cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHH
Confidence            4677888765543332110        123689999999997 6667788999999999999999999999888877764


Q ss_pred             HhhccCCcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHH
Q 016211          144 ILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE  223 (393)
Q Consensus       144 ~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~  223 (393)
                      ...    ....+++||++. ++++|++.+++.|++|++|++|++|..++  +++.+|+++|++++||+||+|+|++.+.+
T Consensus       183 ~~~----~~~~~~~gG~~~-l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~gv~~~g~~~~ad~VV~a~~~~~~~~  255 (425)
T 3ka7_A          183 YRF----GGTGIPEGGCKG-IIDALETVISANGGKIHTGQEVSKILIEN--GKAAGIIADDRIHDADLVISNLGHAATAV  255 (425)
T ss_dssp             HHH----CSCEEETTSHHH-HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECSCHHHHHH
T ss_pred             Hhc----CCccccCCCHHH-HHHHHHHHHHHcCCEEEECCceeEEEEEC--CEEEEEEECCEEEECCEEEECCCHHHHHH
Confidence            221    124788999988 89999999999999999999999999987  56888888999999999999999999999


Q ss_pred             Hhhccccc--CcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeecCCC-ccccceehhhhcccccCCCCcEEEEEe
Q 016211          224 LIKNSILC--NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADF  300 (393)
Q Consensus       224 Ll~~~~~~--~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  300 (393)
                      |+++....  ...+.+.+.++.+.+++++++++++++..  .++.+++.+.. +.. +...|...+.+++++++++.+.+
T Consensus       256 ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~p~~ap~G~~~l~~~~  332 (425)
T 3ka7_A          256 LCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVG--HTGVLLTPYTRRING-VNEVTQADPELAPPGKHLTMCHQ  332 (425)
T ss_dssp             HTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSC--SSSEEECCSSSSEEE-EECGGGTCGGGSCTTCEEEEEEE
T ss_pred             hcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCccC--cCEEEECCChhhcce-EEeccCCCCCcCCCCCeEEEEEe
Confidence            98753210  13345677888888888999999998652  23444433322 222 33445566777766777776644


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCC--
Q 016211          301 YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRH--  378 (393)
Q Consensus       301 ~~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~laGd~~~~~~--  378 (393)
                      ....+..+. .+++++.++++|++++|+.. .++  ..+.+|+.++|.+.+|+.. ++...+|++|||+||||+.+.+  
T Consensus       333 ~~~~~~~~~-~~~~~~~~~~~l~~~~p~~~-~~~--~~v~~~~~~~P~~~~~~~~-~~~~~~p~~gL~laG~~~~~~gg~  407 (425)
T 3ka7_A          333 YVAPENVKN-LESEIEMGLEDLKEIFPGKR-YEV--LLIQSYHDEWPVNRAASGT-DPGNETPFSGLYVVGDGAKGKGGI  407 (425)
T ss_dssp             EECGGGGGG-HHHHHHHHHHHHHHHSTTCC-EEE--EEEEEEBTTBCSBSSCTTC-CCCSBCSSBTEEECSTTSCCTTCC
T ss_pred             ccccccccc-hHHHHHHHHHHHHHhCCCCc-eEE--EEEEEECCCccccccccCC-CCCCCCCcCCeEEeCCccCCCCCC
Confidence            432222222 34567999999999999843 244  4678999999999998653 5677789999999999998744  


Q ss_pred             ---Cc-cccchhcc
Q 016211          379 ---GS-WSQVTFKL  388 (393)
Q Consensus       379 ---ga-~s~~~a~~  388 (393)
                         |+ +|+.+|+.
T Consensus       408 gv~~~~~s~~~~~~  421 (425)
T 3ka7_A          408 EVEGVALGVMSVME  421 (425)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence               33 57777763

PyMOL of 3ka7

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}	Back alignment and structure

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}	Back alignment and structure

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}	Back alignment and structure

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}	Back alignment and structure

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*	Back alignment and structure

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5	Back alignment and structure

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...	Back alignment and structure

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*	Back alignment and structure

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*	Back alignment and structure

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*	Back alignment and structure

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*	Back alignment and structure

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}	Back alignment and structure

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*	Back alignment and structure

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}	Back alignment and structure

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*	Back alignment and structure

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*	Back alignment and structure

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*	Back alignment and structure

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}	Back alignment and structure

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A	Back alignment and structure

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A	Back alignment and structure

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*	Back alignment and structure

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*	Back alignment and structure

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*	Back alignment and structure

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*	Back alignment and structure

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A	Back alignment and structure

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*	Back alignment and structure

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*	Back alignment and structure

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*	Back alignment and structure

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7	Back alignment and structure

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}	Back alignment and structure

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*	Back alignment and structure

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}	Back alignment and structure

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*	Back alignment and structure

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}	Back alignment and structure

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*	Back alignment and structure

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}	Back alignment and structure

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}	Back alignment and structure

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*	Back alignment and structure

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}	Back alignment and structure

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*	Back alignment and structure

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}	Back alignment and structure

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1	Back alignment and structure

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}	Back alignment and structure

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*	Back alignment and structure

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}	Back alignment and structure

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}	Back alignment and structure

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*	Back alignment and structure

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*	Back alignment and structure

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}	Back alignment and structure

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}	Back alignment and structure

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*	Back alignment and structure

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*	Back alignment and structure

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*	Back alignment and structure

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*	Back alignment and structure

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}	Back alignment and structure

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*	Back alignment and structure

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*	Back alignment and structure

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1	Back alignment and structure

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*	Back alignment and structure

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}	Back alignment and structure

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1	Back alignment and structure

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7	Back alignment and structure

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*	Back alignment and structure

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*	Back alignment and structure

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}	Back alignment and structure

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}	Back alignment and structure

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*	Back alignment and structure

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*	Back alignment and structure

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*	Back alignment and structure

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*	Back alignment and structure

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*	Back alignment and structure

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}	Back alignment and structure

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*	Back alignment and structure

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1	Back alignment and structure

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*	Back alignment and structure

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}	Back alignment and structure

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*	Back alignment and structure

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A	Back alignment and structure

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*	Back alignment and structure

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}	Back alignment and structure

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*	Back alignment and structure

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*	Back alignment and structure

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*	Back alignment and structure

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}	Back alignment and structure

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*	Back alignment and structure

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*	Back alignment and structure

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*	Back alignment and structure

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*	Back alignment and structure

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...	Back alignment and structure

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6	Back alignment and structure

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}	Back alignment and structure

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*	Back alignment and structure

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*	Back alignment and structure

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*	Back alignment and structure

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}	Back alignment and structure

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*	Back alignment and structure

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*	Back alignment and structure

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A	Back alignment and structure

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*	Back alignment and structure

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*	Back alignment and structure

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*	Back alignment and structure

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1	Back alignment and structure

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*	Back alignment and structure

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*	Back alignment and structure

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*	Back alignment and structure

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}	Back alignment and structure

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}	Back alignment and structure

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}	Back alignment and structure

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}	Back alignment and structure

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*	Back alignment and structure

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}	Back alignment and structure

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*	Back alignment and structure

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}	Back alignment and structure

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}	Back alignment and structure

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*	Back alignment and structure

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*	Back alignment and structure

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}	Back alignment and structure

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...	Back alignment and structure

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}	Back alignment and structure

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*	Back alignment and structure

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*	Back alignment and structure

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*	Back alignment and structure

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}	Back alignment and structure

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*	Back alignment and structure

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}	Back alignment and structure

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*	Back alignment and structure

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1	Back alignment and structure

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*	Back alignment and structure

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}	Back alignment and structure

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}	Back alignment and structure

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*	Back alignment and structure

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*	Back alignment and structure

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*	Back alignment and structure

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}	Back alignment and structure

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...	Back alignment and structure

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*	Back alignment and structure

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*	Back alignment and structure

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}	Back alignment and structure

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*	Back alignment and structure

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1	Back alignment and structure

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}	Back alignment and structure

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*	Back alignment and structure

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*	Back alignment and structure

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*	Back alignment and structure

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}	Back alignment and structure

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}	Back alignment and structure

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}	Back alignment and structure

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}	Back alignment and structure

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}	Back alignment and structure

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*	Back alignment and structure

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5	Back alignment and structure

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}	Back alignment and structure

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}	Back alignment and structure

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*	Back alignment and structure

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5	Back alignment and structure

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*	Back alignment and structure

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2	Back alignment and structure

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}	Back alignment and structure

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*	Back alignment and structure

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*	Back alignment and structure

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}	Back alignment and structure

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*	Back alignment and structure

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*	Back alignment and structure

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}	Back alignment and structure

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*	Back alignment and structure

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*	Back alignment and structure

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*	Back alignment and structure

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*	Back alignment and structure

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*	Back alignment and structure

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*	Back alignment and structure

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A	Back alignment and structure

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*	Back alignment and structure

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...	Back alignment and structure

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*	Back alignment and structure

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*	Back alignment and structure

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*	Back alignment and structure

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1	Back alignment and structure

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*	Back alignment and structure

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}	Back alignment and structure

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*	Back alignment and structure

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}	Back alignment and structure

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*	Back alignment and structure

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*	Back alignment and structure

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*	Back alignment and structure

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1	Back alignment and structure

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*	Back alignment and structure

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}	Back alignment and structure

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*	Back alignment and structure

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*	Back alignment and structure

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}	Back alignment and structure

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*	Back alignment and structure

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*	Back alignment and structure

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*	Back alignment and structure

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}	Back alignment and structure

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1	Back alignment and structure

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}	Back alignment and structure

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		393
d2bcgg1		297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.002

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 15/139 (10%), Positives = 43/139 (30%)

Query: 75  PLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAA 134
             +++  + D +       D  T  E++ +FG        +   +         +Q +  
Sbjct: 149 EWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARP 208

Query: 135 ATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER 194
           +   IL +     +              ++ + +       G  ++    + + +Y ++ 
Sbjct: 209 SFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT 268

Query: 195 CCISDVVCGKETYSAGAVV 213
                V     T+ A  V+
Sbjct: 269 GKFEGVKTKLGTFKAPLVI 287

PyMOL of d2bcgg1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		393
d2bcgg1		297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.34
d1vg0a1		491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.18
d2v5za1		383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.96
d2ivda1		347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.91
d1d5ta1		336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.68
d2ivda2		108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.42
d2iida1		370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.41
d1seza2		112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.17
d1pj5a2		305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.8
d1aoga2		117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.7
d1seza1		373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.7
d1q1ra2		133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.64
d1feca2		117	Trypanothione reductase {Crithidia fasciculata [Ta	97.53
d1m6ia2		137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.51
d2i0za1		251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.5
d2gf3a1		281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.47
d1gesa2		116	Glutathione reductase {Escherichia coli [TaxId: 56	97.45
d2iida2		113	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.45
d1onfa2		117	Glutathione reductase {Plasmodium falciparum [TaxI	97.31
d1nhpa2		123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.29
d1ryia1		276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.29
d2v5za2		112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	97.23
d1mo9a2		121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.19
d2gqfa1		253	Hypothetical protein HI0933 {Haemophilus influenza	97.07
d2dw4a3		109	Lysine-specific histone demethylase 1, LSD1 {Human	97.06
d1b5qa2		112	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.06
d3lada2		119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.0
d1v59a2		122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.0
d1ebda2		117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.81
d1dxla2		123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.75
d1d7ya2		121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.58
d2bi7a1		314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.57
d1d4ca2		322	Flavocytochrome c3 (respiratory fumarate reductase	96.5
d1y0pa2		308	Flavocytochrome c3 (respiratory fumarate reductase	96.49
d1xhca2		122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.4
d3grsa2		125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.15
d1qo8a2		317	Flavocytochrome c3 (respiratory fumarate reductase	96.11
d1lvla2		115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.11
d1ojta2		125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.09
d2dw4a2		449	Lysine-specific histone demethylase 1, LSD1 {Human	95.9
d1h6va2		122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.59
d1n4wa1		367	Cholesterol oxidase of GMC family {Streptomyces sp	94.02
d2bs2a2		336	Fumarate reductase {Wolinella succinogenes [TaxId:	93.93
d3coxa1		370	Cholesterol oxidase of GMC family {Brevibacterium	93.62
d1m6ia1		213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.58
d1kf6a2		311	Fumarate reductase {Escherichia coli [TaxId: 562]}	93.35
d1w4xa1		298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.34
d2gv8a1		335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.65
d1b5qa1		347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.39
d2cula1		230	GidA-related protein TTHA1897 {Thermus thermophilu	91.12
d1ps9a2		162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	91.12
d2f5va1		379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	89.73
d1nhpa1		198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.58
d1xhca1		167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.91
d1kdga1		360	Flavoprotein domain of flavocytochrome cellobiose	86.75
d1i8ta1		298	UDP-galactopyranose mutase, N-terminal domain {Esc	86.59
d1fl2a2		126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.84
d1trba2		126	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.74
d1djqa2		156	Trimethylamine dehydrogenase, C-terminal domain {M	83.8
d1b5qa1		347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	83.76
d1d7ya1		183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	82.36
d1cf3a1		385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	81.0
d1vdca2		130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	81.0
d1neka2		330	Succinate dehydogenase {Escherichia coli [TaxId: 5	80.85
d1gpea1		391	Glucose oxidase {Penicillium amagasakiense [TaxId:	80.7

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=2.1e-11  Score=104.96  Aligned_cols=122  Identities=15%  Similarity=0.163  Sum_probs=88.9

Q ss_pred             cccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH--hhccCCcceEEecCCchhHhHHHHH
Q 016211           92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWM  169 (393)
Q Consensus        92 ~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~  169 (393)
                      .++..++.+++++++..+... .++.............+.++...+..+..+.  ........+.+++||+++ ++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~  243 (297)
T d2bcgg1         166 DLDKNTMDEVYYKFGLGNSTK-EFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGE-LPQGFA  243 (297)
T ss_dssp             CTTTSBHHHHHHHTTCCHHHH-HHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTTH-HHHHHH
T ss_pred             cccchhhhhhhhhhccCHHHH-HHHHHHHhhhccccccchhhhhhhhhhhhhhhcccccccCcceeccCcHHH-HHHHHH
Confidence            457789999999988887754 5554444333333444555554443333221  111223457889999999 899999


Q ss_pred             HHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEe
Q 016211          170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  215 (393)
Q Consensus       170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a  215 (393)
                      +.+++.|++|++|++|++|..+++++++.+|+++|++++||+||++
T Consensus       244 ~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         244 RLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             HHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             HHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            9999999999999999999887654678888889999999999986

PyMOL of d2bcgg1

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}	Back information, alignment and structure

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}	Back information, alignment and structure

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}	Back information, alignment and structure

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}	Back information, alignment and structure

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}	Back information, alignment and structure

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}	Back information, alignment and structure

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}	Back information, alignment and structure

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}	Back information, alignment and structure

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}	Back information, alignment and structure

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}	Back information, alignment and structure

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	Back information, alignment and structure

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}	Back information, alignment and structure

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}	Back information, alignment and structure

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}	Back information, alignment and structure

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}	Back information, alignment and structure

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}	Back information, alignment and structure

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}	Back information, alignment and structure

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}	Back information, alignment and structure

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}	Back information, alignment and structure

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}	Back information, alignment and structure

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}	Back information, alignment and structure

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}	Back information, alignment and structure

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}	Back information, alignment and structure

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}	Back information, alignment and structure

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}	Back information, alignment and structure