Citrus Sinensis ID: 016223

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MSSSSFLPSRSSASQRRTAQASDNPNTDGTHGPVLEQAPTPKPIFQFIALGLIVFLGLLQFLPATHFRHPSDPFRIWVPFNSNTSFSKTRDSGDRNSGSISSISQDDGMVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSWLVTDSTSSVVNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLPPLFYQMVGR
cccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHcccccccEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccEEEEEcccEEEEccHHHHHcccccccccEEccHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccEEEcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHcc
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHcccccEEEEEcHHHHHHEEEcccccccHHccHHHHcccHHHHHcHcccEEEEEcccEEEEccHHHHHcccccccEEEEcccHHccccccccHHHHHHHHHcccccccccccccccccEccccEEEEcHHHHHHHHHHHHHHHHHHHcHHHHHccccccEEEEEcccccccccHHcccccccccHccHHEEcccccccccccccccccccccccHHHHHHccHHHHHHccc
mssssflpsrssasqrrtaqasdnpntdgthgpvleqaptpkpIFQFIALGLIVFLGLlqflpathfrhpsdpfriwvpfnsntsfsktrdsgdrnsgsissisqddGMVHIVSWMQCLDLRLLAVLVNStlsgsrypdllhfhlfvpkgsedmVSFYKLKVlfphsnlefhgqEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFiymspsvivKGRVEELigidlsnyaIAAADDCSerlnsyvnpdVLDAIQrsasqpwvsgkpyavnscmpdlgMLLIDARKLEKYILEAFLWWKKVINQrdrsigrsPAIALALYDRYLKLSsswlvtdstssvVNKSLairydgpmtacsefgdganmepargdlwkqhlpplFYQMVGR
mssssflpsrssasqrrtaqasdnpntdgthgPVLEQAPTPKPIFQFIALGLIVFLGLLQFLPATHFRHPSDPFRIWVPFNSNTSfsktrdsgdrnsGSISSISQDDGMVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAFLWWKKVinqrdrsigrsPAIALALYDRYLKLSSSwlvtdstssvVNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLPPLFYQMVGR
MssssflpsrssasqrrtaqasDNPNTDGTHGPVLEQAPTPKPIFQFIALGLIVFLGLLQFLPATHFRHPSDPFRIWVPFNSNTSFSKTrdsgdrnsgsissisQDDGMVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKlssswlvtdstssvvNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLPPLFYQMVGR
******************************************PIFQFIALGLIVFLGLLQFLPATHFRHPSDPFRIWVPFN**************************GMVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSWLVTDSTSSVVNKSLAIRYDGPMTACSEFGDG******RGDLWKQHLPPLFYQ****
*************************************APTPKPIFQFIALGLIVFLGLLQFLPATHFRHPSDP************************************VHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSWLVTDSTSSVVNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLPPLFYQMVGR
***************************DGTHGPVLEQAPTPKPIFQFIALGLIVFLGLLQFLPATHFRHPSDPFRIWVPFNSNTSF************SISSISQDDGMVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSWLVTDSTSSVVNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLPPLFYQMVGR
******************************HGPVLEQAPTPKPIFQFIALGLIVFLGLLQFLPATHFRHPSDPFRIWVPFNS***********************DDGMVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSWLVTDSTSSVVNKSLAIRYDGPMTACSEFGDGAN*EPARGDLWKQHLPPLFYQMVGR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSSSSFLPSRSSASQRRTAQASDNPNTDGTHGPVLEQAPTPKPIFQFIALGLIVFLGLLQFLPATHFRHPSDPFRIWVPFNSNTSFSKTRDSGDRNSGSISSISQDDGMVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSWLVTDSTSSVVNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLPPLFYQMVGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q9FWY9361 Probable galacturonosyltr yes no 0.768 0.836 0.230 5e-05
Q9M9Y5589 Probable galacturonosyltr no no 0.610 0.407 0.211 0.0002
Q949Q1537 Probable galacturonosyltr no no 0.572 0.418 0.208 0.0008
>sp|Q9FWY9|GATL5_ARATH Probable galacturonosyltransferase-like 5 OS=Arabidopsis thaliana GN=GATL5 PE=2 SV=1 Back     alignment and function desciption
 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 135/338 (39%), Gaps = 36/338 (10%)

Query: 49  ALGLIVFLGLLQ-FLPATHFR--HP-SDPFRIWVPFNSNTSFSKTRDSGD-RNSGSISSI 103
           AL +I+    LQ F PA   R  HP +D F+       N+ +S  R+S   RN+    S 
Sbjct: 14  ALAMILLSPSLQSFSPAAAIRSSHPYADEFKP----QQNSDYSSFRESPMFRNAEQCRSS 69

Query: 104 SQDDG-----MVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFY 158
            +D G     +VH+   +    LR     VNS L  S  P  + FH  V   S+++ S  
Sbjct: 70  GEDSGVCNPNLVHVAITLDIDYLRGSIAAVNSILQHSMCPQSVFFHFLVSSESQNLESL- 128

Query: 159 KLKVLFPH-SNLE--FHGQEEVKKVIRTASTGVKYSV-QNFEEIVPFVIASVHQSLSKFI 214
            ++  FP  +NL+  +   E V+ +I   S+ V+ ++ Q       ++   +   + + I
Sbjct: 129 -IRSTFPKLTNLKIYYFAPETVQSLI---SSSVRQALEQPLNYARNYLADLLEPCVKRVI 184

Query: 215 YMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKP 274
           Y+   ++V   + +L    L    I A + C      Y             S    +G  
Sbjct: 185 YLDSDLVVVDDIVKLWKTGLGQRTIGAPEYCHANFTKYFTGGFW-------SDKRFNGTF 237

Query: 275 YAVNSCMPDLGMLLIDARKLEKY----ILEAFLWWKKVINQRDRSIGRSPAIALALYDRY 330
              N C  + G+++ID +K  ++     +E ++  +K+  +R   +G  P   L      
Sbjct: 238 KGRNPCYFNTGVMVIDLKKWRQFRFTKRIEKWMEIQKI--ERIYELGSLPPFLLVFAGHV 295

Query: 331 LKLSSSWLVTDSTSSVVNKSLAIRYDGPMTACSEFGDG 368
             +S  W         V  S    + GP++     G G
Sbjct: 296 APISHRWNQHGLGGDNVRGSCRDLHSGPVSLLHWSGSG 333
May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9M9Y5|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
224075287379 predicted protein [Populus trichocarpa] 0.959 0.994 0.589 1e-129
224053693387 predicted protein [Populus trichocarpa] 0.979 0.994 0.587 1e-122
225465111382 PREDICTED: uncharacterized protein LOC10 0.941 0.968 0.55 1e-116
242037931382 hypothetical protein SORBIDRAFT_01g00638 0.821 0.845 0.403 6e-66
147819623 838 hypothetical protein VITISV_010091 [Viti 0.506 0.237 0.565 2e-63
20303602373 hypothetical protein [Oryza sativa Japon 0.834 0.879 0.373 8e-61
413932915382 hypothetical protein ZEAMMB73_148709 [Ze 0.885 0.910 0.391 2e-60
357113463362 PREDICTED: uncharacterized protein LOC10 0.826 0.897 0.375 1e-58
125588106302 hypothetical protein OsJ_12790 [Oryza sa 0.671 0.874 0.377 5e-47
115455681289 Os03g0777600 [Oryza sativa Japonica Grou 0.671 0.913 0.377 1e-46
>gi|224075287|ref|XP_002304587.1| predicted protein [Populus trichocarpa] gi|222842019|gb|EEE79566.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/390 (58%), Positives = 288/390 (73%), Gaps = 13/390 (3%)

Query: 3   SSSFLPSRSSASQRRTAQASDNPNTDGTHGPVLEQAPTPKPIFQFIALGLIVFLGLLQFL 62
           SSSFLPS S A+QRRT+Q   NP + G   P +  AP P+PIFQF+A GLI+FL LLQ L
Sbjct: 2   SSSFLPSTSFATQRRTSQKLGNPKSAGPLDPCITPAPNPRPIFQFLAFGLIIFLALLQLL 61

Query: 63  PATHFRHPSDPFRIWVPFNSNTSFSKTRDSGDRNSGSISSISQDDGMVHIVSWMQCLDLR 122
           PATHFR P DPFR W P +SN S S  + SGD            DGMVH+VSWM CLDLR
Sbjct: 62  PATHFRDPFDPFRNWAPLHSNPS-SPVKFSGD------------DGMVHVVSWMDCLDLR 108

Query: 123 LLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKKVIR 182
            LAVL NSTLS S +PDL+ FH F+P G+ED VSFYKLKVLFPHSNLE HGQE+VK+++R
Sbjct: 109 ALAVLANSTLSSSSHPDLVFFHFFIPGGNEDKVSFYKLKVLFPHSNLEIHGQEQVKEIMR 168

Query: 183 TASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAA 242
           T  +G +Y+  ++EEIVPF+I +VH  L KFIY+S +VI+K RVEELIG+DL+NYAIA A
Sbjct: 169 TVFSGGQYAEPSYEEIVPFIIPTVHNFLRKFIYVSANVIMKARVEELIGVDLNNYAIATA 228

Query: 243 DDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYILEAF 302
           +DCS RL +YVN DVLDAIQRSAS+ WVS  PYA + C+PD  +L+I+ARKLEK  +E  
Sbjct: 229 EDCSRRLKNYVNLDVLDAIQRSASKAWVSETPYAKDFCLPDFSVLVINARKLEKDFVEIV 288

Query: 303 LWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSWLVTDSTSSVVNKSLAIRYDGPMTAC 362
           LWW K +N R+R+  ++ A+ALALY+ YLKLSSSWLV D +SS VN S+ I YDGP T+C
Sbjct: 289 LWWSKALNLRERTNKKNVAVALALYNSYLKLSSSWLVKDFSSSQVNNSMIIHYDGPKTSC 348

Query: 363 SEFGDGANMEPARGDLWKQHLPPLFYQMVG 392
            E  +G   E + G++W ++LP    +++G
Sbjct: 349 KESINGTASEYSHGNVWTRYLPSTSDRILG 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053693|ref|XP_002297932.1| predicted protein [Populus trichocarpa] gi|222845190|gb|EEE82737.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225465111|ref|XP_002270401.1| PREDICTED: uncharacterized protein LOC100242682 [Vitis vinifera] gi|302143265|emb|CBI20560.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|242037931|ref|XP_002466360.1| hypothetical protein SORBIDRAFT_01g006383 [Sorghum bicolor] gi|241920214|gb|EER93358.1| hypothetical protein SORBIDRAFT_01g006383 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|147819623|emb|CAN76562.1| hypothetical protein VITISV_010091 [Vitis vinifera] Back     alignment and taxonomy information
>gi|20303602|gb|AAM19029.1|AC084748_19 hypothetical protein [Oryza sativa Japonica Group] gi|24899455|gb|AAN65025.1| hypothetical protein [Oryza sativa Japonica Group] gi|108711353|gb|ABF99148.1| expressed protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|413932915|gb|AFW67466.1| hypothetical protein ZEAMMB73_148709 [Zea mays] Back     alignment and taxonomy information
>gi|357113463|ref|XP_003558522.1| PREDICTED: uncharacterized protein LOC100841880 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|125588106|gb|EAZ28770.1| hypothetical protein OsJ_12790 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115455681|ref|NP_001051441.1| Os03g0777600 [Oryza sativa Japonica Group] gi|113549912|dbj|BAF13355.1| Os03g0777600, partial [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 8e-07
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 2e-06
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 9e-05
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 3e-04
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 6e-04
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 0.001
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information 
 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 51/291 (17%), Positives = 94/291 (32%), Gaps = 80/291 (27%)

Query: 125 AVLVNSTLSGSRYPDLLHFHLFVPKGSED-MVSF----------YKLKVLFPHSNLEFHG 173
           AV++NS++S ++ P  L FH+     +   M S+           K+        L    
Sbjct: 14  AVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVK 73

Query: 174 QEEVKKVIRTAST------GVKY-SVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRV 226
            + + ++   A T        +Y S+ NF     F +  +   L K IY+   V+V+  +
Sbjct: 74  VDSLMQLESEADTSNLKQRKPEYISLLNF---ARFYLPELFPKLEKVIYLDDDVVVQKDL 130

Query: 227 EELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGM 286
            EL   DL      A        N  VN   L   +R                       
Sbjct: 131 TELWNTDLGGGVAGAV---ETSWNPGVNVVNLTEWRR----------------------- 164

Query: 287 LLIDARKLEKYILEAFLWWKKVINQRDRSI---GRSPAIALALYDRYLKLSSSWLV---- 339
                    + + E +  W ++  + + ++      P   +  Y     L  SW V    
Sbjct: 165 ---------QNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDPSWHVRGLG 215

Query: 340 --TDSTSSVVNKSLAIRYDGPM-----TACSEFGDGANMEPARGDLWKQHL 383
                    +  +  + ++G M     TA   +           +LW+++L
Sbjct: 216 YNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSY----------KELWEKYL 256

A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. Length = 257
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 100.0
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.97
PLN00176333 galactinol synthase 99.97
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.87
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.02
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 98.35
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 96.74
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 96.02
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 95.86
PLN03181453 glycosyltransferase; Provisional 93.79
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 91.74
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information 
Probab=100.00  E-value=2.8e-50  Score=387.50  Aligned_cols=228  Identities=18%  Similarity=0.306  Sum_probs=183.0

Q ss_pred             eEEEEEecccchhhhHHHHHHHHHhCCCCCceEEEEEecCCCCChHHHHHHHhhCC--CCCeEEEechh--hhhhhhhcC
Q 016223          110 VHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFP--HSNLEFHGQEE--VKKVIRTAS  185 (393)
Q Consensus       110 I~I~~~~D~~yl~~laV~I~Sil~N~~~~~~i~fhii~~~~~~~~~~~~kLk~l~~--~~~i~v~~~~~--v~~~i~~~~  185 (393)
                      +|||+|+| ||+ +++|++.|++.||+++.+++|||++++.+  .+.++++.+..+  +.+|+++..+.  ++.......
T Consensus         1 ~hiv~~~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s--~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~   76 (257)
T cd06429           1 IHVVIFSD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQN--YGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDS   76 (257)
T ss_pred             CCEEEEec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccC--HHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccch
Confidence            69999999 999 79999999999999888999999986553  456666666554  45678887642  211111000


Q ss_pred             ---------------CCccchhhhHHHhHHHHhhhccCCCCeEEEEeCCeeeeCChHHHHhCCCCCCeEEEEcccccccc
Q 016223          186 ---------------TGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLN  250 (393)
Q Consensus       186 ---------------~~~~~~~~~~~~~~r~~LP~l~p~~~KvLYLD~DiIV~gdL~eL~~~DL~~~~iAAv~D~~~~~~  250 (393)
                                     +..  ...++.+|+|++||++||+++||||||||+||+|||+|||++||+|+++|||+|      
T Consensus        77 ~~~~~~~~~~~~~~~~~~--~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------  148 (257)
T cd06429          77 LMQLESEADTSNLKQRKP--EYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------  148 (257)
T ss_pred             hhhhhccccccccccCCc--cccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh------
Confidence                           111  123456789999999999999999999999999999999999999999999987      


Q ss_pred             cccChhhhHHHhhhcCCCCccCCCCCCCCCcccccccceeHHHHHHHH-HHHHHHHHHHHhhcc---CCCCChHHHHHHh
Q 016223          251 SYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYI-LEAFLWWKKVINQRD---RSIGRSPAIALAL  326 (393)
Q Consensus       251 ~y~~~~~l~~iq~~~~~~~~~~~~~~~~~~YFNsGVLLiNL~~wR~~~-~~~i~~~~~~~~~~~---~~~~DQd~ln~~~  326 (393)
                                                    |||||||||||++||++. ++++++|+++.....   ...+|||+||++|
T Consensus       149 ------------------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~  198 (257)
T cd06429         149 ------------------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVF  198 (257)
T ss_pred             ------------------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHc
Confidence                                          599999999999999765 488999998765432   2347899999999


Q ss_pred             ccCeeecCCccccccCCC------CCCCCcEEEEcCCCCCCCCCCCCCCCCCCchHHhhccccC
Q 016223          327 YDRYLKLSSSWLVTDSTS------SVVNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLP  384 (393)
Q Consensus       327 ~g~~~~L~~~WN~~~~~~------~~~~~p~IIHf~G~~KPW~~~~~~~~~~~~~~~~W~~Yl~  384 (393)
                      +|+++.||.+||+++.+.      ...++|+||||+|+.|||+..+. ++    ++++||+|++
T Consensus       199 ~~~~~~L~~~wN~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~-~~----~~~~w~~yl~  257 (257)
T cd06429         199 YGLTSPLDPSWHVRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAI-PS----YKELWEKYLS  257 (257)
T ss_pred             cCeeEECChHHcccCCcccccccccccCCcEEEEECCCCCCcCCCCC-Ch----HHHHHHHHhC
Confidence            999999999999986532      34578999999999999998764 33    8999999984

A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 3e-09
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 41/238 (17%)

Query: 110 VHIVSWMQCLD---LRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPH 166
           + IV      D      L V   S  +       + FH+     SE   +   +      
Sbjct: 1   MDIVF---AADDNYAAYLCVAAKSVEAAHP-DTEIRFHVLDAGISEA--NRAAVAANLRG 54

Query: 167 SNLEFHGQEEVKKVIRTASTGVKY-SVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGR 225
                   +   +        +++ S+  +       +        K +Y+   V+V+  
Sbjct: 55  GGGNIRFIDVNPEDFAGFPLNIRHISITTY---ARLKLGEYIADCDKVLYLDIDVLVRDS 111

Query: 226 VEELIGIDLSNYAIAAA-DDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDL 284
           +  L   DL +  + A+ D   ER   Y                   G+ Y  N+     
Sbjct: 112 LTPLWDTDLGDNWLGASIDLFVERQEGYKQ-----------KIGMADGEYY-FNA----- 154

Query: 285 GMLLIDARKL-EKYILEAFLWWKKVINQR----DRSIGRSPAIALALYDRYLKLSSSW 337
           G+LLI+ +K     I +    W +         D+ I     +           +S +
Sbjct: 155 GVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDI-----LNGLFKGGVCYANSRF 207
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.97
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.96
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=1.6e-48  Score=377.29  Aligned_cols=252  Identities=12%  Similarity=0.160  Sum_probs=179.7

Q ss_pred             ceEEEEEecccchhhhHHHHHHHHHhCCCCCceEEEEEecCCCCChHHHHHHHhhCCCCC--eEEEechhhhhhhhhcCC
Q 016223          109 MVHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSN--LEFHGQEEVKKVIRTAST  186 (393)
Q Consensus       109 ~I~I~~~~D~~yl~~laV~I~Sil~N~~~~~~i~fhii~~~~~~~~~~~~kLk~l~~~~~--i~v~~~~~v~~~i~~~~~  186 (393)
                      .|||++|+|++|+++++|+|.||+.|+++ .+++|||+..+.  +++++++|+++++..+  ++++..+.  +.+.....
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~i--s~~~~~~L~~~~~~~~~~i~~~~~~~--~~~~~~~~   79 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRI--SEDKLKDLGEDLKKFSYTLYPIRATD--DLFSFAKV   79 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCC--CHHHHHHHHHHHHTTTCEEEEEECC-----------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCC--CHHHHHHHHHHHHHcCCEEEEEEeCH--HHHhcCcc
Confidence            49999999999999999999999999986 679999997654  5668888988876554  45554431  11111111


Q ss_pred             CccchhhhHHHhHHHHhhhccC-CCCeEEEEeCCeeeeCChHHHHhCCCCCCeEEEEcccccccccccChhhhHHHhhhc
Q 016223          187 GVKYSVQNFEEIVPFVIASVHQ-SLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSA  265 (393)
Q Consensus       187 ~~~~~~~~~~~~~r~~LP~l~p-~~~KvLYLD~DiIV~gdL~eL~~~DL~~~~iAAv~D~~~~~~~y~~~~~l~~iq~~~  265 (393)
                      ..+++   ..+|+|+++|+++| +++||||||||+||++||+|||++||+++.+|||+||....  .     .+..+   
T Consensus        80 ~~~~s---~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~--~-----~~~~~---  146 (276)
T 3tzt_A           80 TDRYP---KEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD--M-----ANNVN---  146 (276)
T ss_dssp             ----C---HHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC---------------------
T ss_pred             ccccC---HHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccch--H-----HHHHH---
Confidence            22332   35678999999999 69999999999999999999999999999999999985320  0     00000   


Q ss_pred             CCCCccCCCCCCCCCcccccccceeHHHHHHHH-HHHHHHHHHHHhhccCCCCChHHHHHHhccCeeecCC-ccccccCC
Q 016223          266 SQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYI-LEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSS-SWLVTDST  343 (393)
Q Consensus       266 ~~~~~~~~~~~~~~~YFNsGVLLiNL~~wR~~~-~~~i~~~~~~~~~~~~~~~DQd~ln~~~~g~~~~L~~-~WN~~~~~  343 (393)
                            ...++...||||||||||||++||++. .++++.|+++.. .....+|||+||.+|+|+++.||. +||++...
T Consensus       147 ------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~-~~~~~~DQd~LN~~f~~~~~~Lp~~~wN~~~~~  219 (276)
T 3tzt_A          147 ------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNH-MNLLLPDQDILNAMYGDRIYPLDDLIYNYDARN  219 (276)
T ss_dssp             ---------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC---------CHHHHHHHGGGEEEEEHHHHSEETTC
T ss_pred             ------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcc-ccccCCChhHHHHHHhCCEEECCchheeeeccc
Confidence                  011222348999999999999999765 578888876533 223469999999999999999999 99998642


Q ss_pred             C--------------CCCCCcEEEEcCCCCCCCCCCCCCCCCCCchHHhhccccCcchhhhh
Q 016223          344 S--------------SVVNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLPPLFYQMV  391 (393)
Q Consensus       344 ~--------------~~~~~p~IIHf~G~~KPW~~~~~~~~~~~~~~~~W~~Yl~~~~~~~l  391 (393)
                      .              .+.++|+||||+|..|||+..+. ++    ++++||+|+... +++|
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~-~~----~~~~w~~Y~~~~-~~~~  275 (276)
T 3tzt_A          220 YSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHR-NK----FTSLYKHYMSLT-KRYL  275 (276)
T ss_dssp             HHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCC-ST----THHHHHHHHHHH-HHHT
T ss_pred             chhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCC-Cc----hHHHHHHHHHHH-HHhh
Confidence            1              13467999999999999998764 33    899999999844 6655
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 393
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-06
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 26/218 (11%), Positives = 56/218 (25%), Gaps = 23/218 (10%)

Query: 121 LRLLAVLVNSTL-SGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPHSNLEFHGQEEVKK 179
              L V   S   +       + FH+     SE   +     +     N+ F      + 
Sbjct: 12  AAYLCVAAKSVEAAHPDTE--IRFHVLDAGISEANRAAVAANLRGGGGNIRFI-DVNPED 68

Query: 180 VIRTASTGVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAI 239
                      S+  +       +        K +Y+   V+V+  +  L   DL +  +
Sbjct: 69  FAGFPLNIRHISITTY---ARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWL 125

Query: 240 AAADDCSERLNSYVNPDVLDAIQRSASQPWVSGKPYAVNSCMPDLGMLLIDARKLEKYIL 299
            A+ D                        +      A      + G+LLI+ +K  ++ +
Sbjct: 126 GASIDLFVERQEG----------------YKQKIGMADGEYYFNAGVLLINLKKWRRHDI 169

Query: 300 EAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSW 337
                      +          +           +S +
Sbjct: 170 FKMSSEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRF 207

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.96
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=2e-45  Score=351.19  Aligned_cols=249  Identities=13%  Similarity=0.088  Sum_probs=188.7

Q ss_pred             eEEEEEecccchhhhHHHHHHHHHhCCCCCceEEEEEecCCCCChHHHHHHHhhCCC--CCeEEEechhhhhhhhhcC-C
Q 016223          110 VHIVSWMQCLDLRLLAVLVNSTLSGSRYPDLLHFHLFVPKGSEDMVSFYKLKVLFPH--SNLEFHGQEEVKKVIRTAS-T  186 (393)
Q Consensus       110 I~I~~~~D~~yl~~laV~I~Sil~N~~~~~~i~fhii~~~~~~~~~~~~kLk~l~~~--~~i~v~~~~~v~~~i~~~~-~  186 (393)
                      ||||+|+|++|+++++|+|+||+.++++ ..++|||++.+.  +++++++|++.+..  .++.++.....  .+.... .
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~--~~~~~~~l~~~~~~~~~~i~~~~~~~~--~~~~~~~~   75 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGI--SEANRAAVAANLRGGGGNIRFIDVNPE--DFAGFPLN   75 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSC--CHHHHHHHHHTSGGGTTTEEEEECCGG--GGTTSCCC
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCC--CHHHHHHHHHHHHHcCCeEEEEECCch--Hhcccccc
Confidence            7999999999999999999999998876 568999987654  55677888877654  45666654311  111111 1


Q ss_pred             CccchhhhHHHhHHHHhhhccCCCCeEEEEeCCeeeeCChHHHHhCCCCCCeEEEEcccccccccccChhhhHHHhhhcC
Q 016223          187 GVKYSVQNFEEIVPFVIASVHQSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSERLNSYVNPDVLDAIQRSAS  266 (393)
Q Consensus       187 ~~~~~~~~~~~~~r~~LP~l~p~~~KvLYLD~DiIV~gdL~eL~~~DL~~~~iAAv~D~~~~~~~y~~~~~l~~iq~~~~  266 (393)
                      ..+++.   ..|+|+++|++||+++||||||||+||.+||++||++|++++.+|||.|+......    .          
T Consensus        76 ~~~~s~---~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~----~----------  138 (282)
T d1ga8a_          76 IRHISI---TTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQE----G----------  138 (282)
T ss_dssp             CTTCCG---GGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTST----T----------
T ss_pred             ccccCH---HHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhh----h----------
Confidence            223333   35789999999999999999999999999999999999999999999997432110    0          


Q ss_pred             CCCccCCCCCCCCCcccccccceeHHHHHHH-HHHHHHHHHHHHhhccCCCCChHHHHHHhccCeeecCCccccccCC--
Q 016223          267 QPWVSGKPYAVNSCMPDLGMLLIDARKLEKY-ILEAFLWWKKVINQRDRSIGRSPAIALALYDRYLKLSSSWLVTDST--  343 (393)
Q Consensus       267 ~~~~~~~~~~~~~~YFNsGVLLiNL~~wR~~-~~~~i~~~~~~~~~~~~~~~DQd~ln~~~~g~~~~L~~~WN~~~~~--  343 (393)
                        +....++....+||||||||||+++||++ .+++++.++++... ...++||++||.+|.|++..|+.+||++...  
T Consensus       139 --~~~~~~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~-~~~~~DQd~LN~~f~~~~~~L~~~~N~~~~~~~  215 (282)
T d1ga8a_         139 --YKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKD-VMQYQDQDILNGLFKGGVCYANSRFNFMPTNYA  215 (282)
T ss_dssp             --HHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTT-TCSSTHHHHHHHHHTTSEEEECGGGSBCHHHHH
T ss_pred             --hHHHhCCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhccc-CcccCchhHHHHHhcCCEEeCCHHHeecccccc
Confidence              00111233456899999999999999964 55888888776432 2346999999999999999999999987420  


Q ss_pred             ------------------CCCCCCcEEEEcCCCCCCCCCCCCCCCCCCchHHhhccccCcchh
Q 016223          344 ------------------SSVVNKSLAIRYDGPMTACSEFGDGANMEPARGDLWKQHLPPLFY  388 (393)
Q Consensus       344 ------------------~~~~~~p~IIHf~G~~KPW~~~~~~~~~~~~~~~~W~~Yl~~~~~  388 (393)
                                        ....++|+||||+|+.|||+..+...     +++.|++|+...++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~-----~~~~~~~~~~~~~~  273 (282)
T d1ga8a_         216 FMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAW-----GAERFTELAGSLTT  273 (282)
T ss_dssp             TCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCST-----TTHHHHHHHTTCSC
T ss_pred             ccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCCh-----hHHHHHHHHHhhhc
Confidence                              12457899999999999998876433     57889988876543
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure