Citrus Sinensis ID: 016225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAKPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDGS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHccccccccccccccHHHHccccccccccccHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccccccEEcccccccHHHHcHHHHHHHcccccccccHHHcccccccccccccEEEccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccEEcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHccccccEHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccccccccc
Coil and Loop (DISEMBL)
melfpaqpdlslqisppnskpsstwssrrgaaaeEEMDLGFWKRALdsrnsssmaaanakpssdistgggfelslsnparvsssSVLSEslssnnnlnhhhqfhllqnntttttncngnnifhsfhhqqnhsqfpthhhlhqnqhhhpvlyhqppqqqglsqelgflrpirgipvyqnphhhhhhhqashafpfphhqqqpldsppppslvannntstssLNSFQSQQGLMRsrfmsrfpakrsmraprmrwTTTLHARFVHAVELlggheratpksVLELMDVKDLTLAHVKSHLQMYRTVKTtdraaassdafengssgdtsedimfgiqhprrpetssiqqqgrasnglwsnssreawlhgktkdsainlpsleevdpkcmsyegisdgs
Flexible Loop (DISEMBL)
melfpaqpdlslqisppnskpsstwssrrgAAAEEEMDLGFWKRALDSRNSSSMAAANAKPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSrfpakrsmraprmRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTtdraaassdafengssgdtseDIMFGIQHPRRPETSSIQQQGRASNGLWSNSSREAWLHGktkdsainlpsleevdpkcmsyegisdgs
Low Complexity Region (SEG)
MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDsrnsssmaaanakpssDISTGGGFElslsnparvssssvlseslssnnnlnhhhqfhllqnntttttncngnnifhsfhhqqnhsqfPThhhlhqnqhhhPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNphhhhhhhqashafpfphhqqqpldsppppslVAnnntstsslnsFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDGS
Disordered region (IsUnstruct)
****************************************************************************************************HQFHLLQNNTTTTTNCNGNNIFHSFHH************************************LGFLRPIRGI****************************************************************************MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV*******************************************************************************************
Disordered Region (DISOPRED)
***FPAQPDLSLQI**********************************************************************************************************************************************************PIRGIPVYQN************************************************************************RWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY**********************************************************************************************
Disordered Region (DISEMBL)
MELFPAQPDLSLQI*********************EMDLGFWKRALDS*****************STGGGFELSLS****************SNNNLNHHHQFHLLQNNTTTTTNCNGNNIFHSFHHQ******************HPVLYHQPPQQQGLSQELGFLRPIRGIPVYQN************AFPF************PPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPR******************SNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDGS
Disordered Region (DISPRO)
*ELFPAQPDLSLQISPPNSK**********AAAEEEMDLGFWKRALD********************GGGFEL*L**********************N*HH*F****NNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHH**************************************************PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT****************************************QGRASNGLWSNSSREAWLHGKTKDSAINLPS******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAKPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q9C616	388	Probable transcription fa	yes	no	0.870	0.881	0.523	1e-77
Q93WJ9	403	Transcription repressor K	no	no	0.511	0.498	0.426	2e-42
Q941I2	322	Probable transcription fa	no	no	0.633	0.773	0.391	1e-39
Q0J235	532	Probable transcription fa	no	no	0.290	0.214	0.704	1e-38
Q9FJV5	276	Probable transcription fa	no	no	0.282	0.402	0.591	5e-30
Q700D9	255	Putative Myb family trans	no	no	0.150	0.231	0.661	1e-16
Q9SAK5	358	Myb family transcription	no	no	0.142	0.156	0.589	4e-13
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.139	0.133	0.636	5e-13
Q940D0	690	Two-component response re	no	no	0.142	0.081	0.508	2e-08
Q9ZWJ9	664	Two-component response re	no	no	0.145	0.085	0.482	3e-08

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score =  290 bits (743), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 211/403 (52%), Positives = 241/403 (59%), Gaps = 61/403 (15%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAE---EEMDLGFWKRALDSRNSSSMAAA 57
           MELFPAQPDLSLQISPPNSKPSSTW  RR    +   EE+DLGFW+RALDSR SS ++ +
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSSTWQRRRSTTDQEDHEELDLGFWRRALDSRTSSLVSNS 60

Query: 58  NAKPSSDISTGGGF-ELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNC 116
            +K     +    F +LSLSN             +S +     HH   LL        NC
Sbjct: 61  TSK-----TINHPFQDLSLSN-------------ISHHQQQQQHHHPQLLP-------NC 95

Query: 117 NGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVY 176
           N +NI  SF       QFPT     Q QH    L H              LRPIRGIP+Y
Sbjct: 96  NSSNILTSF-------QFPTQ---QQQQHLQGFLAHDLNTH---------LRPIRGIPLY 136

Query: 177 QNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTS--TSSLNSFQS----QQGL 230
            NP  HHH H+                S      +  NN S  TSS+++        Q L
Sbjct: 137 HNPPPHHHPHRPPPPCFPFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTL 196

Query: 231 MRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA 290
            R+RFM RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA
Sbjct: 197 NRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA 256

Query: 291 HVKSHLQMYRTVKTTDRAAAS---SDAFENGSSGD-TSEDIMFGIQHPRRPETSSIQQQG 346
           HVKSHLQMYRTVKTTD+AAAS   SD +ENGSSGD  S+D MF +    R ++  +    
Sbjct: 257 HVKSHLQMYRTVKTTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSR-DSEELTNPL 315

Query: 347 RASNGLWSNSSREAWLHGKTKDSA--INLPSLEEVDPKCMSYE 387
             SNGLW+NSS EA LHGK  D+   I LPS +E+D KC SYE
Sbjct: 316 EKSNGLWTNSSGEARLHGKLIDNVAEIMLPSEKELDGKCSSYE 358

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/272 (42%), Positives = 147/272 (54%), Gaps = 71/272 (26%)

Query: 141 HQNQHHHPVL--YHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQ 198
           HQ  +++P++   HQ   +  +S      RPIRGIPVY N            +FPF H Q
Sbjct: 86  HQQHYNNPIINGVHQRVDESEIS---NLHRPIRGIPVYHN-----------RSFPF-HQQ 130

Query: 199 QQPLDSPPPPSLVANN-------NTSTSSLNSFQSQQ----------------------- 228
              L     PSL   +       N+S+   N+++S Q                       
Sbjct: 131 NSSL-----PSLGGGDMDQISILNSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVG 185

Query: 229 ---------------GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERA 273
                          G++RSRF+ + P KRSMRAPRMRWT++LHARFVHAVELLGGHERA
Sbjct: 186 SSDSSSPHHHNHHHHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERA 245

Query: 274 TPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQH 333
           TPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT++ AASSD       G    ++      
Sbjct: 246 TPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQSST 305

Query: 334 PRRPET--SSIQQQGRASNG--LWSNSSREAW 361
            +R ++  +S+ Q+   S+    WSNSSRE W
Sbjct: 306 DQRAQSDDTSLHQETDISSTQPRWSNSSRETW 337

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/296 (39%), Positives = 158/296 (53%), Gaps = 47/296 (15%)

Query: 106 LQNNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELG 165
            Q+  +   N + NN+ H+     N+        ++ NQ H          ++ L Q+L 
Sbjct: 40  FQSKASDLDNKSSNNLIHTLQFTSNNEA----TKINSNQEH----------KESLDQDLR 85

Query: 166 ---FLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLN 222
               +RPIRGIP+YQN    H+++ ++   PF   +     +     L+ N N S +  N
Sbjct: 86  SIFMMRPIRGIPLYQNQVLDHYYYSSTSPNPFFFSEVNGQHASR--RLITNPNCSFNLHN 143

Query: 223 SFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELM 282
             + Q      RF     AKR +RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELM
Sbjct: 144 RHRRQAQPQPPRFT----AKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM 199

Query: 283 DVKDLTLAHVKSHLQMYRTVKTTDRAAASS--DAFENGSSGDTSEDIMFGIQHPRRPETS 340
           DV+DLTLAHVKSHLQMYRT+K+T++   SS     ENGS  ++                 
Sbjct: 200 DVQDLTLAHVKSHLQMYRTIKSTEKPTTSSGQSDCENGSQVNS----------------- 242

Query: 341 SIQQQGRASNGLWSNSSREAWLHGKTK-DSAINLPSLEE--VDPKCMSYEGISDGS 393
             +++ R   GLW+NSS EA    K K  S +++ S E    + +C S E +S  S
Sbjct: 243 --EREARNLTGLWNNSSSEARFQLKAKASSGVDISSNENEWKNRRCPSNERLSSDS 296

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 91/115 (79%), Gaps = 1/115 (0%)

Query: 208 PSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELL 267
           P ++   +     L+  Q   G + SRFM + PAKRSMRAPRMRWT+TLHARFVHAVELL
Sbjct: 285 PGVIGGAHHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELL 344

Query: 268 GGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGD 322
           GGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK+TD+ AASS    +G SGD
Sbjct: 345 GGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAASSGP-ADGGSGD 398

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score =  132 bits (332), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 87/120 (72%), Gaps = 9/120 (7%)

Query: 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           KRS+RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRT
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159

Query: 302 VKTTDRAA-----ASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNS 356
           VK TD+ +        +A +     + +E+   G      P +SS+Q+  RAS   WS++
Sbjct: 160 VKCTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGTD-TNSPNSSSVQKTQRAS---WSST 215

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query: 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 305
            PR+RWT  LH  FVHAV+LLGG  +ATPK VL++MDVK LT++HVKSHLQMYR  + T
Sbjct: 23  VPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRIT 81

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 303
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K
Sbjct: 35  PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 303
           RMRWT  LH  FV AV  LGG ERATPK+VL+L++   LT+ HVKSHLQ YRT +
Sbjct: 233 RMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTAR 287

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           ++ PR+ W+  LH +FV AV  LG  E+A PK +LELM+V  LT  +V SHLQ YR 
Sbjct: 235 LKKPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           S++ PR+ W+  LH +FV AV  LG  ++A PK +LE+M+V  LT  +V SHLQ YR 
Sbjct: 213 SLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
224138212	378	predicted protein [Populus trichocarpa]	0.862	0.896	0.637	1e-111
359474536	368	PREDICTED: probable transcription factor	0.852	0.910	0.631	1e-107
255555885	340	transcription factor, putative [Ricinus	0.832	0.961	0.621	1e-104
131054094	402	MYB transcription factor MYB34 [Medicago	0.921	0.900	0.586	1e-104
357485075	402	Two-component response regulator EHD1 [M	0.921	0.900	0.591	1e-103
356531445	390	PREDICTED: uncharacterized protein LOC10	0.867	0.874	0.572	2e-98
224071387	332	predicted protein [Populus trichocarpa]	0.783	0.927	0.619	7e-94
356497643	344	PREDICTED: LOW QUALITY PROTEIN: probable	0.778	0.889	0.537	3e-91
297742050	335	unnamed protein product [Vitis vinifera]	0.768	0.901	0.566	7e-91
18398337	388	protein kanadi2 / DNA binding / transcri	0.870	0.881	0.523	7e-76

>gi|224138212|ref|XP_002326546.1| predicted protein [Populus trichocarpa] gi|222833868|gb|EEE72345.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/406 (63%), Positives = 285/406 (70%), Gaps = 67/406 (16%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKP+STW  RR    EEEMDLGFWKRALDSRNS S     AK
Sbjct: 1   MELFPAQPDLSLQISPPNSKPTSTW--RR---TEEEMDLGFWKRALDSRNSMS---PMAK 52

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P S       FELSLSNP RVS             N NH H      N+   T NCNGN+
Sbjct: 53  PDS------CFELSLSNP-RVSEP-----------NSNHFH------NSLQNTNNCNGNS 88

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPH 180
           +FHSF  Q+N    P HH  ++  +HHPVL+ QP QQ+GLSQELGFLRPIRGIPVYQNP 
Sbjct: 89  LFHSF--QKNQYTHP-HHKQNRLHNHHPVLF-QPQQQEGLSQELGFLRPIRGIPVYQNPP 144

Query: 181 HHHHHHQASHAFPFPHHQQQPLDSPP-PPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRF 239
                       PFP  QQ   ++     SL   NNTS ++L+ ++SQ GLMRSRFMSRF
Sbjct: 145 ------------PFPFSQQTLYNTCSQDASLATTNNTSATTLSPYRSQ-GLMRSRFMSRF 191

Query: 240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
           PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPK VLELMDVKDLTLAHVKSHLQMY
Sbjct: 192 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKLVLELMDVKDLTLAHVKSHLQMY 251

Query: 300 RTVKTTDRAAAS----SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS------ 349
           RTVK TD+A A+    SD F+NGSSGDTSED M  IQ+PRR + S  +QQGR        
Sbjct: 252 RTVK-TDKAGAAPSAQSDVFDNGSSGDTSEDFMLDIQNPRRLDIS--KQQGRPGAHQDKD 308

Query: 350 -NGLWSN-SSREAWLHGKTKDSAINLPSLE-EVDPKCMSYE-GISD 391
            + LWSN SSREA LHGK KDS  NLPSLE +VDPKC+SYE  ISD
Sbjct: 309 YHALWSNSSSREAGLHGKLKDSGGNLPSLEKDVDPKCLSYERNISD 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474536|ref|XP_002278005.2| PREDICTED: probable transcription factor KAN2-like [Vitis vinifera]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/404 (63%), Positives = 274/404 (67%), Gaps = 69/404 (17%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKPSS W  RR   AEEE+DLGFWKRALDSRNS S   +  K
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSSGW--RR---AEEEVDLGFWKRALDSRNSIS---SMTK 52

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P S       FELSLSNP   S S          NN NH   FHLLQN  T        N
Sbjct: 53  PDS------CFELSLSNPRATSES----------NNSNH---FHLLQNGNT--------N 85

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPH 180
           + HSF   Q        H LH              QQQG SQELGFLRPIRGIPVYQNP 
Sbjct: 86  LLHSFQQSQYPHHHHHQHQLHHQLFQ---------QQQGFSQELGFLRPIRGIPVYQNPP 136

Query: 181 HHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQ-QGLMRSRFMSRF 239
                     +FPF    QQPLDS    S   N   +T+  + FQS  QGL+RSRF+SRF
Sbjct: 137 ----------SFPF---AQQPLDSSIASSTTTNTAATTTGSSPFQSHHQGLIRSRFLSRF 183

Query: 240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
           PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY
Sbjct: 184 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 243

Query: 300 RTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQ------QGRASN 350
           RTVKTTDRAAAS   SD +ENGSSGDTSED+MF IQ+PR+ E  SIQQ      Q +  +
Sbjct: 244 RTVKTTDRAAASSGQSDVYENGSSGDTSEDVMFDIQNPRKSEL-SIQQGRPNVHQEKDYH 302

Query: 351 GLWSNSSREAWLHGKTKDSAINLPSLEE-VDPKCMSYEGISDGS 393
           GLWSNSSREAWLHGK +DS  N P+LEE +DPKC+SYE ISD S
Sbjct: 303 GLWSNSSREAWLHGKQRDSGGNTPTLEEDMDPKCLSYERISDVS 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555885|ref|XP_002518978.1| transcription factor, putative [Ricinus communis] gi|223541965|gb|EEF43511.1| transcription factor, putative [Ricinus communis]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/388 (62%), Positives = 264/388 (68%), Gaps = 61/388 (15%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKP+STW  RR    EEE+DLGFWKRALDSR         A+
Sbjct: 1   MELFPAQPDLSLQISPPNSKPTSTW--RR---TEEEIDLGFWKRALDSR---------AR 46

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P S       FELSLSNP R+S SS                 FHLLQN    + N NG N
Sbjct: 47  PDSSC-----FELSLSNP-RISESS---------------KHFHLLQN----SNNYNGTN 81

Query: 121 IFHSFHHQQN-HSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNP 179
           +F+SF   Q  H Q P  H LHQ+  H     H   QQ GLSQ+LGFLRPIRGIPVYQNP
Sbjct: 82  LFNSFQQNQYPHHQQPKSHLLHQHSPHFQQQQHHQQQQPGLSQDLGFLRPIRGIPVYQNP 141

Query: 180 HHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRF 239
                   +        H Q   +S    S +A NN++T+++  FQSQ GLMRSR MSRF
Sbjct: 142 PTTPPFPFS--------HPQTLDNSCSQTSSLATNNSTTTNIGHFQSQ-GLMRSRLMSRF 192

Query: 240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
           PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY
Sbjct: 193 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 252

Query: 300 RTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASN------ 350
           RTVKTTDRAAAS   SD F+NGSSGDTSED+MF IQ+ RR + S   QQGR +       
Sbjct: 253 RTVKTTDRAAASSGQSDIFDNGSSGDTSEDLMFEIQNSRRSDIS--MQQGRPNGHHDKDY 310

Query: 351 -GLWSNSSREAWLHGKTKDSAINLPSLE 377
            GLWSNSSREAWLH K+KDS  NL SLE
Sbjct: 311 QGLWSNSSREAWLHVKSKDSCGNLTSLE 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|131054094|gb|ABO32773.1| MYB transcription factor MYB34 [Medicago truncatula]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/406 (58%), Positives = 273/406 (67%), Gaps = 44/406 (10%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPN+K ++T + +R    EEEMDLGFWKRALDSRNS S + A++K
Sbjct: 1   MELFPAQPDLSLQISPPNTKQTTTSNWKRTTTTEEEMDLGFWKRALDSRNSLSSSMASSK 60

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
                +    F+LSLSNP +      L  + +++NNL HHH F         +     NN
Sbjct: 61  -----TDNYSFDLSLSNPTKP-----LDSNNNTSNNLIHHHHFQ-------NSGKKKANN 103

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQ--GLSQELGFLRPIRGIPVYQN 178
            + SFH Q N+ Q P         H  P+  H  P QQ   LSQELGFLRPIRGIPVYQN
Sbjct: 104 PYQSFH-QNNYFQHP---------HPQPLFQHHQPHQQHQSLSQELGFLRPIRGIPVYQN 153

Query: 179 PHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSR 238
           P         +H     H       +   PS ++N N ++SS   FQSQ  LMRSRF+SR
Sbjct: 154 PPPLSFPQLHNHNHNLNHLHILDGTTTTTPSSISNTNNTSSS--PFQSQ-ALMRSRFLSR 210

Query: 239 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 298
           FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPK VLELMDV+DLTLAHVKSHLQM
Sbjct: 211 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKPVLELMDVQDLTLAHVKSHLQM 270

Query: 299 YRTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS------ 349
           YRTVKTTDR  AS   SD ++NGSSGD S+DIMF I   RR    SI+QQGR+S      
Sbjct: 271 YRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKE 330

Query: 350 -NGLWSNSSREAWLHGKTK-DSAINLPSLE-EVDPKCMSYEGISDG 392
             GLWSNSSREAWLHGK K DS  N+ SLE E+DPKC+SYE ISDG
Sbjct: 331 CYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDG 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485075|ref|XP_003612825.1| Two-component response regulator EHD1 [Medicago truncatula] gi|355514160|gb|AES95783.1| Two-component response regulator EHD1 [Medicago truncatula]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/406 (59%), Positives = 273/406 (67%), Gaps = 44/406 (10%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPN+K ++T + +R    EEEMDLGFWKRALDSRNS S + A++K
Sbjct: 1   MELFPAQPDLSLQISPPNTKQTTTSNWKRTTTTEEEMDLGFWKRALDSRNSLSSSMASSK 60

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
                +    F+LSLSNP +      L  + +++NNL HHH F    NN           
Sbjct: 61  -----TDNYSFDLSLSNPTKP-----LDSNNNTSNNLIHHHHFQNSGNNNANNP------ 104

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQ--GLSQELGFLRPIRGIPVYQN 178
            + SFH Q N+ Q P         H  P+  H  P QQ   LSQELGFLRPIRGIPVYQN
Sbjct: 105 -YQSFH-QNNYFQHP---------HPQPLFQHHQPHQQHQSLSQELGFLRPIRGIPVYQN 153

Query: 179 PHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSR 238
           P         +H     H       +   PS ++N N ++SS   FQSQ  LMRSRF+SR
Sbjct: 154 PPPLSFPQLHNHNHNLNHLHILDGTTTTTPSSISNTNNTSSS--PFQSQ-ALMRSRFLSR 210

Query: 239 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 298
           FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM
Sbjct: 211 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 270

Query: 299 YRTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS------ 349
           YRTVKTTDR  AS   SD ++NGSSGD S+DIMF I   RR    SI+QQGR+S      
Sbjct: 271 YRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKE 330

Query: 350 -NGLWSNSSREAWLHGKTK-DSAINLPSLE-EVDPKCMSYEGISDG 392
             GLWSNSSREAWLHGK K DS  N+ SLE E+DPKC+SYE ISDG
Sbjct: 331 CYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDG 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531445|ref|XP_003534288.1| PREDICTED: uncharacterized protein LOC100798081 [Glycine max]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 234/409 (57%), Positives = 271/409 (66%), Gaps = 68/409 (16%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNS-SSMAAANA 59
           MELFPAQPDLSLQISPPN+KP+S+W  RR  + EE+MDLGFWKRALDSRNS  SMA  ++
Sbjct: 1   MELFPAQPDLSLQISPPNAKPTSSW--RR--STEEDMDLGFWKRALDSRNSIQSMAKQDS 56

Query: 60  KPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGN 119
                      F+LSLSNP + S ++    S ++ +NL HHH F   QN  T T      
Sbjct: 57  ----------CFDLSLSNP-KASDNNNNHHSNTTTSNLIHHHHF---QNGATPTNATTTT 102

Query: 120 NIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNP 179
                   Q+NH        L Q Q             Q LSQ+LGFLRPIRGIPVYQNP
Sbjct: 103 TNPFQLPFQKNHYFHQQQQPLFQPQ------------HQSLSQDLGFLRPIRGIPVYQNP 150

Query: 180 HHHHHHHQASHAFPFPHHQQQ-----PLD-SPPPPSLVANNNTSTSSLNSFQSQQGLMRS 233
                        P P  Q       PL+ S   PS+++N N  ++  +S    Q LMRS
Sbjct: 151 P------------PIPFTQHHHHHHLPLEASTTTPSIISNTNNGSTPFHS----QALMRS 194

Query: 234 RFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVK 293
           RF+SRFPAKRSMRAPRMRWT+TLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVK
Sbjct: 195 RFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVK 254

Query: 294 SHLQMYRTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS- 349
           SHLQMYRTVKTTDRAAAS   SD ++NGSSGDTS+D+MF I+  RR + S   +QGR+S 
Sbjct: 255 SHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDIKSSRRSDLSV--KQGRSSV 312

Query: 350 ------NGLWSNSSREAWLHGKTK-DSAINLP-SLE-EVDPKCMSYEGI 389
                 +GLW NSSREAWLHGKTK DS  N+P SLE E+DPKC+SYE I
Sbjct: 313 NQDKEYHGLWGNSSREAWLHGKTKTDSVGNVPFSLEKEMDPKCLSYERI 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071387|ref|XP_002303435.1| predicted protein [Populus trichocarpa] gi|222840867|gb|EEE78414.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 228/368 (61%), Positives = 252/368 (68%), Gaps = 60/368 (16%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKP+STW  RR    EEEMDLGFW RALDSRNS S   + AK
Sbjct: 1   MELFPAQPDLSLQISPPNSKPTSTW--RR---TEEEMDLGFWTRALDSRNSIS---SMAK 52

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P +       FELSLSNP              S  N NH H  ++LQN+     N    N
Sbjct: 53  PDT------CFELSLSNPK------------VSEPNSNHFH--NILQNSNNCNGN----N 88

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPH 180
           +FHSF   Q       HH  +   +HHPVL+ Q  QQQGLSQELGFLRPIRGIPVYQNP 
Sbjct: 89  LFHSFQQNQYTH---HHHQQNHLHNHHPVLFQQQ-QQQGLSQELGFLRPIRGIPVYQNPP 144

Query: 181 HHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFP 240
                       PFP  QQ   ++    S +A NN+S +S++ +QSQ G MRSRFMSRFP
Sbjct: 145 S-----------PFPFSQQTFDNTCSQASSLAANNSSATSISPYQSQ-GSMRSRFMSRFP 192

Query: 241 AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
           AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR
Sbjct: 193 AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 252

Query: 301 TVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS-------N 350
           TVKTTDRAAA    SD F+NGSSGDTSED++F I++PRR E S   QQGR +        
Sbjct: 253 TVKTTDRAAAPSALSDVFDNGSSGDTSEDLVFDIENPRRSEMS--MQQGRPNAHQDKDYQ 310

Query: 351 GLWSNSSR 358
            LWSNSSR
Sbjct: 311 ALWSNSSR 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497643|ref|XP_003517669.1| PREDICTED: LOW QUALITY PROTEIN: probable transcription factor KAN2-like [Glycine max]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 214/398 (53%), Positives = 249/398 (62%), Gaps = 92/398 (23%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNS--SSMAAAN 58
           MELFPAQPDL L ISPPN+ P+S+W  RR  + EE+MDLGFWKRALDSRNS  S+MA  +
Sbjct: 1   MELFPAQPDLXLTISPPNANPTSSW--RR--STEEDMDLGFWKRALDSRNSIQSTMAKQD 56

Query: 59  AKPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNG 118
           +           F+LSLSNP           S ++N+NL HHH F             N 
Sbjct: 57  S----------CFDLSLSNP---------KASDNNNSNLIHHHHFQ----------TSNA 87

Query: 119 NNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQN 178
             I + F       Q P   +   +Q   P+   Q    Q LSQ+LGFLRPIRGIPVYQN
Sbjct: 88  TTIINPF-------QLPFQQNHFFHQQQQPLFQPQ---HQSLSQDLGFLRPIRGIPVYQN 137

Query: 179 PHHHHHHHQASHAFPFPHHQQQPLD-SPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMS 237
           P             PF  H   PL+ S   PS+++N NT ++  +S    Q LMRSRF+S
Sbjct: 138 PP----------PIPFTQHHHLPLEASTTTPSIISNTNTGSTPFHS----QALMRSRFLS 183

Query: 238 RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 297
           RFPAKRSMRAPRMRWT+TLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 184 RFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 243

Query: 298 MYRTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWS 354
           MYRTVKTTDRAAAS   SD ++NGSSGDTS+D+MF I                       
Sbjct: 244 MYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDI----------------------- 280

Query: 355 NSSREAWLHGKTK-DSAINLPSL--EEVDPKCMSYEGI 389
              +EAWLHGKTK DS  N+PS   +E+DPKC+SYE I
Sbjct: 281 ---KEAWLHGKTKADSVGNVPSYLEKEMDPKCLSYERI 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742050|emb|CBI33837.3| unnamed protein product [Vitis vinifera]

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 229/404 (56%), Positives = 246/404 (60%), Gaps = 102/404 (25%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKPS                                      
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSC------------------------------------- 23

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
                     FELSLSNP   S S          NN NH   FHLLQN  T        N
Sbjct: 24  ----------FELSLSNPRATSES----------NNSNH---FHLLQNGNT--------N 52

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPH 180
           + HSF   Q        H LH              QQQG SQELGFLRPIRGIPVYQNP 
Sbjct: 53  LLHSFQQSQYPHHHHHQHQLHHQLFQ---------QQQGFSQELGFLRPIRGIPVYQNPP 103

Query: 181 HHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQ-QGLMRSRFMSRF 239
                     +FPF    QQPLDS    S   N   +T+  + FQS  QGL+RSRF+SRF
Sbjct: 104 ----------SFPF---AQQPLDSSIASSTTTNTAATTTGSSPFQSHHQGLIRSRFLSRF 150

Query: 240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
           PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY
Sbjct: 151 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 210

Query: 300 RTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQ------QGRASN 350
           RTVKTTDRAAAS   SD +ENGSSGDTSED+MF IQ+PR+ E  SIQQ      Q +  +
Sbjct: 211 RTVKTTDRAAASSGQSDVYENGSSGDTSEDVMFDIQNPRKSEL-SIQQGRPNVHQEKDYH 269

Query: 351 GLWSNSSREAWLHGKTKDSAINLPSLEE-VDPKCMSYEGISDGS 393
           GLWSNSSREAWLHGK +DS  N P+LEE +DPKC+SYE ISD S
Sbjct: 270 GLWSNSSREAWLHGKQRDSGGNTPTLEEDMDPKCLSYERISDVS 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398337|ref|NP_564392.1| protein kanadi2 / DNA binding / transcription factor [Arabidopsis thaliana] gi|75333399|sp|Q9C616.1|KAN2_ARATH RecName: Full=Probable transcription factor KAN2; AltName: Full=Protein KANADI 2 gi|12597871|gb|AAG60180.1|AC084110_13 unknown protein [Arabidopsis thaliana] gi|15723595|gb|AAL05437.1| GARP-like putative transcription factor KANADI2 [Arabidopsis thaliana] gi|115646867|gb|ABJ17146.1| At1g32240 [Arabidopsis thaliana] gi|225897994|dbj|BAH30329.1| hypothetical protein [Arabidopsis thaliana] gi|332193334|gb|AEE31455.1| protein kanadi2 / DNA binding / transcription factor [Arabidopsis thaliana]

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 211/403 (52%), Positives = 241/403 (59%), Gaps = 61/403 (15%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAE---EEMDLGFWKRALDSRNSSSMAAA 57
           MELFPAQPDLSLQISPPNSKPSSTW  RR    +   EE+DLGFW+RALDSR SS ++ +
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSSTWQRRRSTTDQEDHEELDLGFWRRALDSRTSSLVSNS 60

Query: 58  NAKPSSDISTGGGF-ELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNC 116
            +K     +    F +LSLSN             +S +     HH   LL        NC
Sbjct: 61  TSK-----TINHPFQDLSLSN-------------ISHHQQQQQHHHPQLLP-------NC 95

Query: 117 NGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVY 176
           N +NI  SF       QFPT     Q QH    L H              LRPIRGIP+Y
Sbjct: 96  NSSNILTSF-------QFPTQ---QQQQHLQGFLAHDLNTH---------LRPIRGIPLY 136

Query: 177 QNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTS--TSSLNSFQS----QQGL 230
            NP  HHH H+                S      +  NN S  TSS+++        Q L
Sbjct: 137 HNPPPHHHPHRPPPPCFPFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTL 196

Query: 231 MRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA 290
            R+RFM RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA
Sbjct: 197 NRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA 256

Query: 291 HVKSHLQMYRTVKTTDRAAAS---SDAFENGSSGD-TSEDIMFGIQHPRRPETSSIQQQG 346
           HVKSHLQMYRTVKTTD+AAAS   SD +ENGSSGD  S+D MF +    R ++  +    
Sbjct: 257 HVKSHLQMYRTVKTTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSR-DSEELTNPL 315

Query: 347 RASNGLWSNSSREAWLHGKTKDSA--INLPSLEEVDPKCMSYE 387
             SNGLW+NSS EA LHGK  D+   I LPS +E+D KC SYE
Sbjct: 316 EKSNGLWTNSSGEARLHGKLIDNVAEIMLPSEKELDGKCSSYE 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
TAIR|locus:2028346	388	KAN2 "AT1G32240" [Arabidopsis	0.412	0.417	0.715	8.1e-79
TAIR|locus:2171427	403	KAN "KANADI" [Arabidopsis thal	0.338	0.330	0.649	2.6e-47
UNIPROTKB|Q0J235	532	RL9 "Probable transcription fa	0.236	0.174	0.829	8.3e-45
TAIR|locus:505006489	322	KAN3 "AT4G17695" [Arabidopsis	0.312	0.381	0.578	4.4e-44
TAIR|locus:2163852	276	ATS "AT5G42630" [Arabidopsis t	0.287	0.409	0.593	1.9e-33
TAIR|locus:2042927	340	AT2G38300 "AT2G38300" [Arabido	0.292	0.338	0.448	8.3e-19
TAIR|locus:2063141	410	AT2G40260 "AT2G40260" [Arabido	0.368	0.353	0.379	1.2e-17
TAIR|locus:2041145	256	AT2G02060 [Arabidopsis thalian	0.201	0.308	0.541	1.6e-17
TAIR|locus:2204518	255	AT1G14600 "AT1G14600" [Arabido	0.165	0.254	0.636	4.1e-17
TAIR|locus:2041539	255	AT2G42660 "AT2G42660" [Arabido	0.180	0.278	0.563	1.8e-16

TAIR|locus:2028346 KAN2 "AT1G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 8.1e-79, Sum P(3) = 8.1e-79
 Identities = 121/169 (71%), Positives = 133/169 (78%)

Query:   228 QGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDL 287
             Q L R+RFM RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDL
Sbjct:   194 QTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDL 253

Query:   288 TLAHVKSHLQMYRTVKTTDRAAASS---DAFENGSSGDT-SEDIMFGIQHPRRPETSSIQ 343
             TLAHVKSHLQMYRTVKTTD+AAASS   D +ENGSSGD  S+D MF +    R ++  + 
Sbjct:   254 TLAHVKSHLQMYRTVKTTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSR-DSEELT 312

Query:   344 QQGRASNGLWSNSSREAWLHGKTKDSA--INLPSLEEVDPKCMSYEGIS 390
                  SNGLW+NSS EA LHGK  D+   I LPS +E+D KC SYE IS
Sbjct:   313 NPLEKSNGLWTNSSGEARLHGKLIDNVAEIMLPSEKELDGKCSSYERIS 361

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2171427 KAN "KANADI" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 2.6e-47, Sum P(3) = 2.6e-47
 Identities = 89/137 (64%), Positives = 103/137 (75%)

Query:   229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 288
             G++RSRF+ + P KRSMRAPRMRWT++LHARFVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct:   201 GMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLT 260

Query:   289 LAHVKSHLQMYRTVKTTDRAAASSDAF---ENGSSGDTSEDIMFGIQHPRRPETSSIQQQ 345
             LAHVKSHLQMYRTVKTT++ AASSD     E G +G+         Q  +  +TS  Q+ 
Sbjct:   261 LAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQSSTDQRAQSDDTSLHQET 320

Query:   346 GRASNG-LWSNSSREAW 361
               +S    WSNSSRE W
Sbjct:   321 DISSTQPRWSNSSRETW 337

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010158 "abaxial cell fate specification" evidence=IMP

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0J235 RL9 "Probable transcription factor RL9" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 394 (143.8 bits), Expect = 8.3e-45, Sum P(3) = 8.3e-45
 Identities = 78/94 (82%), Positives = 84/94 (89%)

Query:   229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 288
             G + SRFM + PAKRSMRAPRMRWT+TLHARFVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct:   306 GALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 365

Query:   289 LAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGD 322
             LAHVKSHLQMYRTVK+TD+ AASS   + GS GD
Sbjct:   366 LAHVKSHLQMYRTVKSTDKPAASSGPADGGS-GD 398

GO:0005634 "nucleus" evidence=IDA

GO:0010158 "abaxial cell fate specification" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

TAIR|locus:505006489 KAN3 "AT4G17695" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 4.4e-44, Sum P(3) = 4.4e-44
 Identities = 74/128 (57%), Positives = 94/128 (73%)

Query:   238 RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 297
             RF AKR +RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ
Sbjct:   155 RFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQ 214

Query:   298 MYRTVKTTDRAAASSDAF--ENGSSGDTSEDI--MFGIQHPRRPETSSIQQQGRASNGLW 353
             MYRT+K+T++   SS     ENGS  ++  +   + G+ +    E +  Q + +AS+G+ 
Sbjct:   215 MYRTIKSTEKPTTSSGQSDCENGSQVNSEREARNLTGLWNNSSSE-ARFQLKAKASSGVD 273

Query:   354 SNSSREAW 361
              +S+   W
Sbjct:   274 ISSNENEW 281

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2163852 ATS "AT5G42630" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
 Identities = 73/123 (59%), Positives = 89/123 (72%)

Query:   242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
             KRS+RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRT
Sbjct:   100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159

Query:   302 VKTTDRAA-----ASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNS 356
             VK TD+ +        +A +     + +E+   G      P +SS+Q+  RAS   WS S
Sbjct:   160 VKCTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGTD-TNSPNSSSVQKTQRAS---WS-S 214

Query:   357 SRE 359
             ++E
Sbjct:   215 TKE 217

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0048481 "ovule development" evidence=IMP

GO:0080060 "integument development" evidence=IGI;IMP

GO:0005618 "cell wall" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2042927 AT2G38300 "AT2G38300" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 57/127 (44%), Positives = 75/127 (59%)

Query:   240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
             P  RS + PR+RWT  LH RFV AVE LGG ERATPK V ++M++K L++AHVKSHLQMY
Sbjct:    48 PYVRS-KVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMY 106

Query:   300 RTVKTTDRA---AASSDAFENGSSGDT---SEDIMF-GIQHPRRPETSSIQQQGRASNG- 351
             R+ K  D+    A     FE  +  +    S+  MF G  H      S  +   + SN  
Sbjct:   107 RSKKIDDQGQAIAGHKHLFETSTDRNIYKLSQLPMFRGYNHNH---DSPFRYGSKISNAS 163

Query:   352 LWSNSSR 358
             LW++SS+
Sbjct:   164 LWNSSSQ 170

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2063141 AT2G40260 "AT2G40260" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 60/158 (37%), Positives = 89/158 (56%)

Query:   240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
             P  RS + PR+RWT  LH  F+ AVE LGG +RATPK VL+LM+VK L++AHVKSHLQMY
Sbjct:    76 PYNRS-KTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMY 134

Query:   300 RTVKTTDRAAASSD-AFENGSSGDTSEDIMFGIQH-PRRPETSSIQQQGRASNGLWSNSS 357
             R+ KT +        +FE+G+    +   +  +Q   +RP +SS+   G    G W++  
Sbjct:   135 RSKKTDEPNEGDQGFSFEHGAGYTYNLSQLPMLQSFDQRP-SSSLGYGG----GSWTDHR 189

Query:   358 REA----WLHGKTKDSAINLPSLEEVDPKCMSYEGISD 391
             R+     W    T+++     ++    P    Y G+S+
Sbjct:   190 RQIYRSPWRGLTTRENTRTRQTMFSSQPG-ERYHGVSN 226

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041145 AT2G02060 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query:   233 SRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHV 292
             ++F    P  RS   PR+RWT  LH  FVHAVE+LGG  RATPK VL++MDVK LT++HV
Sbjct:    16 NKFHGVRPYVRSP-VPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHV 74

Query:   293 KSHLQMYR-----TVKTTDRAAASS 312
             KSHLQMYR     T++  + +++SS
Sbjct:    75 KSHLQMYRGGSKLTLEKPEESSSSS 99

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2204518 AT1G14600 "AT1G14600" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 42/66 (63%), Positives = 50/66 (75%)

Query:   240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
             P  RS   PR+RWT  LH  FVHAV+LLGG  +ATPK VL++MDVK LT++HVKSHLQMY
Sbjct:    17 PYVRSP-VPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMY 75

Query:   300 RTVKTT 305
             R  + T
Sbjct:    76 RGSRIT 81

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041539 AT2G42660 "AT2G42660" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 40/71 (56%), Positives = 51/71 (71%)

Query:   248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDR 307
             PR+RWT  LH  FV AV+ LGG +RATPK VLE+M++K L++AHVKSHLQMYR+ K    
Sbjct:    51 PRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYRSKKLEPS 110

Query:   308 AAASSDAFENG 318
             +     AF +G
Sbjct:   111 SRPGFGAFMSG 121

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C616	KAN2_ARATH	No assigned EC number	0.5235	0.8702	0.8814	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	393
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	5e-19
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	4e-08
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-04
pfam14179	110	pfam14179, YppG, YppG-like protein	3e-04
pfam04592	238	pfam04592, SelP_N, Selenoprotein P, N terminal reg	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.004

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 31/54 (57%), Positives = 36/54 (66%)

Query: 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           PR+ WT  LH RF+ AV+ LGG + ATPK +LELM V  LT   V SHLQ YR 
Sbjct: 2   PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 6/90 (6%)

Query: 212 ANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHE 271
           A+++   SS++   +Q      +  +  P K+     ++ WT  LH RFVHAVE LG  E
Sbjct: 205 ASDSGECSSVDRKDNQASPKSCK--NAAPGKKK---AKVDWTPELHRRFVHAVEQLG-VE 258

Query: 272 RATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           +A P  +LELM V+ LT  ++ SHLQ YR+
Sbjct: 259 KAFPSRILELMGVQCLTRHNIASHLQKYRS 288

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
           R  WT       + AV+  G         + + +     T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 18/83 (21%), Positives = 23/83 (27%), Gaps = 13/83 (15%)

Query: 130 NHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQAS 189
           N  Q  T+ +  QNQ   P       QQ                P Y  P     H    
Sbjct: 1   NPYQQNTNQYPPQNQQQQPYQQQPYHQQMPP-------------PPYSPPQQQQGHFMPP 47

Query: 190 HAFPFPHHQQQPLDSPPPPSLVA 212
              P+P    Q    P   S ++
Sbjct: 48  QPQPYPKQSPQQQQPPQFSSFLS 70

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 18/79 (22%), Positives = 23/79 (29%), Gaps = 7/79 (8%)

Query: 108 NNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFL 167
              T  T            H  +HS      H H + H H    H        SQ+    
Sbjct: 166 KKVTLATVNKPVEAEPRQDHPHHHSHHEHQGHAHHHPHGHH---HPGSNSHSESQQPDPD 222

Query: 168 RPIRGIPVYQNPHHHHHHH 186
           +P           HHHH+H
Sbjct: 223 KPTEPPS----GLHHHHNH 237

SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma. It is thought to be glycosylated. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage. The promoter structure of bovine SelP suggest that it may be involved in countering heavy metal intoxication, and may also have a developmental function. The N-terminal region of SelP can exist independently of the C terminal region. Zebrafish selenoprotein Pb lacks the C terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported. N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N terminal region may adopt a thioredoxin fold and catalyze redox reactions. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP. The function of the bacterial members of this family is uncharcterised. Length = 238

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 28/141 (19%), Positives = 38/141 (26%), Gaps = 17/141 (12%)

Query: 124 SFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIP--VYQNPHH 181
               Q    QF         Q   P    Q PQQ    Q+  F    + +P    Q P  
Sbjct: 209 GHPEQVQPQQFLPAPSQAPAQPPLP---PQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQ 265

Query: 182 HHHHHQASHAFP-------FPHHQQQPLDSPPP---PSLVANNNTSTSSLNSFQSQQGLM 231
                Q     P        P   Q      PP   P L+             Q ++ L+
Sbjct: 266 QQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325

Query: 232 RSRFMSRFPA--KRSMRAPRM 250
           +     R     + + RA R 
Sbjct: 326 QLSQQQREALSQEEAKRAKRR 346

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
PLN03162	526	golden-2 like transcription factor; Provisional	99.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.84
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.11
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	96.67
smart00426	68	TEA TEA domain.	85.75

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.88  E-value=1.1e-23  Score=209.28  Aligned_cols=63  Identities=46%  Similarity=0.729  Sum_probs=59.2

Q ss_pred             ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccccccccc
Q 016225          242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT  305 (393)
Q Consensus       242 krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~K~t  305 (393)
                      ....||+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~  292 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH  292 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence            445789999999999999999999999 799999999999999999999999999999998763

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.84  E-value=1.7e-21  Score=147.83  Aligned_cols=56  Identities=55%  Similarity=0.844  Sum_probs=54.0

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccc
Q 016225          247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV  302 (393)
Q Consensus       247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~  302 (393)
                      |+|++||+|+|++||+||+.||+.+.|+||.|+++|++++||+.+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            68999999999999999999997789999999999999999999999999999975

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.11  E-value=0.00072  Score=48.38  Aligned_cols=48  Identities=23%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccc
Q 016225          249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR  300 (393)
Q Consensus       249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR  300 (393)
                      |..||+|=+.+|++||.++|.   -.-+.|.+.|+ .+-|..+|++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992   25889999998 8999999999999885

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=96.67  E-value=4.2e-05  Score=58.56  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             CCCchhhhccCCCCCCC-CC--------cchhhcCCcccccccC
Q 016225          321 GDTSEDIMFGIQHPRRP-ET--------SSIQQQGRASNGLWSN  355 (393)
Q Consensus       321 g~~SEAL~mQmEvQrRL-E~--------~sIE~QGr~lq~lWsn  355 (393)
                      ..++|||++|||||+|| |+        ++|+++|||+++|.+.
T Consensus         2 ~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek   45 (51)
T PF14379_consen    2 MQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEK   45 (51)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            35789999999999998 32        6799999999988753

>smart00426 TEA TEA domain

Probab=85.75  E-value=0.91  Score=36.98  Aligned_cols=46  Identities=24%  Similarity=0.353  Sum_probs=29.8

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChh-HHHhh--c-C-----------C--CcccHHHHHHhhcc
Q 016225          251 RWTTTLHARFVHAVELLGGHERATPK-SVLEL--M-D-----------V--KDLTLAHVKSHLQM  298 (393)
Q Consensus       251 rWT~ELH~rFV~AVeqLGG~dkAtPK-~ILel--M-n-----------V--~GLTr~hVkSHLQK  298 (393)
                      +|.++|-..|++|++..=  ...+=| +++..  | |           .  .-=|+.+|+||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            799999999999998774  122222 22211  0 0           1  23578899999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	393
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		2e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
           + + PR+ WT  LH +F+ AV+ LG  ERA PK +L+LM+V  LT  +V SHLQ +R
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFR 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-18

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 78.4 bits (193), Expect = 1e-18
 Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           + + PR+ WT  LH +F+ AV+ LG  ERA PK +L+LM+V  LT  +V SHLQ +R 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.94
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	89.67
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	88.28
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	82.98
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	81.4

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.94  E-value=2.4e-28  Score=189.09  Aligned_cols=60  Identities=47%  Similarity=0.790  Sum_probs=57.1

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccccc
Q 016225          244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT  304 (393)
Q Consensus       244 s~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~K~  304 (393)
                      +.+|+||+||+|||++||+||++|| .++|+||+||++|+|+|||++||||||||||+..+
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999 79999999999999999999999999999998754

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=89.67  E-value=0.71  Score=36.10  Aligned_cols=51  Identities=16%  Similarity=0.126  Sum_probs=40.9

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccc
Q 016225          244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR  300 (393)
Q Consensus       244 s~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR  300 (393)
                      .....+-.||.|=+.+|++||+..|+-    =+.|-+.|+  +=|..+|+.|-++|-
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRLP   63 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHhc
Confidence            344456789999999999999999942    366777764  799999999988873

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=88.28  E-value=0.31  Score=39.52  Aligned_cols=57  Identities=23%  Similarity=0.286  Sum_probs=37.1

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhh---c-C-------------CCcccHHHHHHhhccccccccc
Q 016225          247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLEL---M-D-------------VKDLTLAHVKSHLQMYRTVKTT  305 (393)
Q Consensus       247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel---M-n-------------V~GLTr~hVkSHLQKYRl~K~t  305 (393)
                      +..-+|.++|-..|++|++..- .. -+=|.+|..   | |             -.-=|+.+|+||||.-|..+..
T Consensus         4 ~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            4 DAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred             CcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence            3456899999999999999774 11 111222311   1 1             0346888999999988766543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.98  E-value=1.7  Score=32.62  Aligned_cols=52  Identities=15%  Similarity=0.198  Sum_probs=39.5

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCCCCCCh---hHHHhhcCCCcccHHHHHHhhcccccc
Q 016225          248 PRMRWTTTLHARFVHAVELLGGHERATP---KSVLELMDVKDLTLAHVKSHLQMYRTV  302 (393)
Q Consensus       248 pRLrWT~ELH~rFV~AVeqLGG~dkAtP---K~ILelMnV~GLTr~hVkSHLQKYRl~  302 (393)
                      .+-.||.|=+++|+++|+.+| .+...|   +.|-+.|  +|=|..+|+.|-|+|-..
T Consensus         7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999 222112   3455554  689999999999998654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=81.40  E-value=2.7  Score=31.55  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccc
Q 016225          247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV  302 (393)
Q Consensus       247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~  302 (393)
                      ..+-.||.|=++.|+++|+.+|-    .=+.|-..  |+|=|..+|+.|-++|-..
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence            34568999999999999999992    34566665  4789999999998887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	393
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	6e-18

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.3 bits (185), Expect = 6e-18
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
           + + PR+ WT  LH +F+ AV+ LG  ERA PK +L+LM+V  LT  +V SHLQ +R
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFR 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	393
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.91
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	87.12
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	85.97

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=7.1e-26  Score=173.10  Aligned_cols=60  Identities=47%  Similarity=0.783  Sum_probs=56.6

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccccc
Q 016225          244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT  304 (393)
Q Consensus       244 s~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~K~  304 (393)
                      +.||+|++||+|||++||+||++||+ ++|+||+|+++|+|+|||++||+|||||||+...
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999985 8999999999999999999999999999999754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.12  E-value=0.61  Score=32.52  Aligned_cols=48  Identities=21%  Similarity=0.303  Sum_probs=38.8

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccc
Q 016225          249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV  302 (393)
Q Consensus       249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~  302 (393)
                      .++||+|=...|++||...|.    -=..|-+.|  ++=|..+|++|-++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999993    234666665  478999999999887543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.97  E-value=0.5  Score=31.89  Aligned_cols=44  Identities=23%  Similarity=0.262  Sum_probs=34.8

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccc
Q 016225          251 RWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY  299 (393)
Q Consensus       251 rWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY  299 (393)
                      .||.|=..++++||...| .  .-=+.|-+.|+  +=|..+|+.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998 1  22456666665  56899999988776