Citrus Sinensis ID: 016227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MDENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQELENYANVLKGSLSANSNTTHTKTNTNNDNNNNNNNDNTLHQNQNAHADPTHLPQTLLLEILPSKSAKWDRLLSANAPQDPNSNGSGRHEPPMKPEEEQTGSGQERGAAESGSVPAGEVGSRQETVDGCATGRVLVVLEEEEEERVKKKKKKGKKKRVQLKGEEVVVGEENGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKNWKSRMCTR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHcHHHHHHHccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHcccccccccEEEEcccccccccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHHHHHHccccccEEccc
Coil and Loop (DISEMBL)
MDENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQELENYANVLKGslsansntthtktntnndnnnnnnndntlhqnqnahadpthlpQTLLleilpsksakwdrllsanapqdpnsngsgrheppmkpeeeqtgsgqergaaesgsvpagevgsrqetvdgcaTGRVLVVLEEEEEERVKKKKKKGKKKRVQLKGEEVVvgeengggrenpgmpelgclcpltsmgsaTQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEVCADMelktksskplentetdefadISFEELLAQEKKDSFWQKNWKSRMCTR
Flexible Loop (DISEMBL)
MDENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQELENYANVLKGSLSANSNTTHTKTNTNNDNNNNNNNDNTLHQNQNAHADPTHLPQTLLLEILPSKSAKWDRLLSAnapqdpnsngsgrheppMKPEEEQTGSGQERGAAEsgsvpagevgsrqetvdgcaTGRVlvvleeeeeervkkkkkkgkkkrvqlkgeevvvgeengggrenpgmpELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREEledksetikRKFSIqkallskadrssidrLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEVCADMelktksskplentetDEFADISFEELLAQekkdsfwqknwksrmctr
Low Complexity Region (SEG)
MDENNLMLFMllvisfffltifftvtlfltYKKIKRLQELENYANVLKGSLSAnsntthtktntnndnnnnnnndntlhqnqnAHADPTHLPQTLLLEILPSKSAKWDRLLSANAPQDPNSNGSGRHEPPMKPEEEQTGSGQERGAAESGSVPAGEVGSRQETVDGCATgrvlvvleeeeeervkkkkkkgkkkrvqlkgeevvvgeengggrenpgmpeLGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKNWKSRMCTR
Disordered region (IsUnstruct)
*****LMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQELENYANVL***********************************************LLLEIL*****************************************************************GCATGRVLVVL********************************************LGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQ**********************************RQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEVCADM***********************************************
Disordered Region (DISOPRED)
***NNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQE**N***VLK*SLSAN**********************************THLPQTLLLEILPSKSAKWDRLLSANAPQDP******************************************************************************************************GCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEV********************EFADISFEELLAQEKKDSFWQKNWKS*****
Disordered Region (DISEMBL)
MDENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQELENYANVLKGSLSANSNTTHTKTNTNNDNNNNNNNDNTLHQNQNAHADPTHLPQTLLLEILPSKSAKWDRLLSANA***********************************************TVDGCATGRVLVVLEE*******************LKGEEVVVGEENGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKNWKSRMCTR
Disordered Region (DISPRO)
*DENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQELENYANVLKGSLSANSNTTHTKTNT********************HADPTHLPQTLLLEILPSKSAKWDRLLSANA**********************************************ETVDGCATGRVLVVLEEEE*******K*************EVVV*E***GGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEVCADMELKT******ENTETDEFADISFEELLAQEKKDSFWQKNWK******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQELENYANVLKGSLSANSNTTHTKTNTNNDNNNNNNNDNTLHQNQNAHADPTHLPQTLLLEILPSKSAKWDRLLSANAPQDPNSNGSGRHEPPMKPEEEQTGSGQERGAAESGSVPAGEVGSRQETVDGCATGRVLVVLEEEEEERVKKKKKKGKKKRVQLKGEEVVVGEENGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSxxxxxxxxxxxxxxxxxxxxxVYVYNWLQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKNWKSRMCTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
255572955	334	conserved hypothetical protein [Ricinus	0.773	0.910	0.444	4e-62
307136279	318	hypothetical protein [Cucumis melo subsp	0.806	0.996	0.404	2e-58
82570061	328	CA-responsive protein [Brassica oleracea	0.473	0.567	0.605	2e-55
334182657	338	uncharacterized protein [Arabidopsis tha	0.531	0.618	0.571	6e-55
297850162	323	predicted protein [Arabidopsis lyrata su	0.463	0.563	0.617	3e-54
449480579	347	PREDICTED: uncharacterized protein LOC10	0.760	0.861	0.4	7e-53
9802740	338	Hypothetical protein [Arabidopsis thalia	0.508	0.591	0.576	1e-52
449447849	347	PREDICTED: uncharacterized protein LOC10	0.659	0.746	0.446	2e-52
357454653	292	hypothetical protein MTR_2g100100 [Medic	0.435	0.585	0.618	5e-47
255637568	276	unknown [Glycine max]	0.463	0.659	0.581	6e-46

>gi|255572955|ref|XP_002527408.1| conserved hypothetical protein [Ricinus communis] gi|223533218|gb|EEF34974.1| conserved hypothetical protein [Ricinus communis]

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 164/369 (44%), Positives = 206/369 (55%), Gaps = 65/369 (17%)

Query: 27  LFLTYKKIKRLQELE-----NYANVLKGSLSANSNTTHTKTNTNNDNNNNNNNDNTLHQN 81
           +FL YK   + ++ E     N ++V+  SLS   + T  KT+ NN               
Sbjct: 23  IFLLYKSFNKAKKQEQHTQENDSSVINHSLSKIIDKT-CKTSENN--------------- 66

Query: 82  QNAHADPTHLPQTLLLEILPSKSAKWDRLLSANAPQDPNSNGSGRHEPPMKPEEEQTGSG 141
                  THL ++LLL+ILPS S KW  L                       +E ++G G
Sbjct: 67  ------QTHLTRSLLLDILPSDSPKWASLFG---------------------DETRSGHG 99

Query: 142 QERGAAESGSVPAGEVGSRQETVDGCATGRVLVVLEEEEEERVKKKKKKGKKKRVQLKGE 201
            ER    +G +   +       V           L+ + EE     + KG ++  ++ G 
Sbjct: 100 DER----NGLIGDSDYNHNTNRVKKKKKRAKKKRLDLKSEEE-NGAQDKGIER--EMDGS 152

Query: 202 EVVVGEENGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGE 261
           + V G         P   EL CL P TS  SATQRKIK+ Y  LV+  ES  LTLAQVG+
Sbjct: 153 DSVSG---------PVKQELVCLYPFTSSSSATQRKIKQQYDHLVKCNESKGLTLAQVGD 203

Query: 262 FTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVY 321
           F  CL +AR EL+ KSE IKRKF+I KALL KADRSSIDRLRQQIY LE +Q+RLEED +
Sbjct: 204 FANCLIEARNELQHKSEVIKRKFTITKALLLKADRSSIDRLRQQIYKLELEQKRLEEDTF 263

Query: 322 VYNWLQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSF 381
           VYNWLQ QL+LSPA KKM E+ A MELK KS + +E++ T E ADISFEELLAQEKKD F
Sbjct: 264 VYNWLQQQLKLSPAYKKMLEISACMELKAKSGELIESSNT-EVADISFEELLAQEKKDVF 322

Query: 382 WQKNWKSRM 390
           WQKN KSR+
Sbjct: 323 WQKNGKSRL 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136279|gb|ADN34106.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/383 (40%), Positives = 195/383 (50%), Gaps = 66/383 (17%)

Query: 10  MLLVISFFFLTIFFTVTLFLTYKKIKRLQELENYANVLKGSLSANSNTTHTKTNTNNDNN 69
           MLL+ SF F T F  V  F  YK++K++ E E +  ++   +         K +  N   
Sbjct: 1   MLLLCSFLFFTFFILVLSFSLYKRVKKV-EFEEHQQLISNPIEPE------KIDIGNSVT 53

Query: 70  NNNNNDNTLHQNQNAHADPTHLPQTLLLEILPSKSAKWDRLLSANAPQDPNSNGSGRHEP 129
           +  N             D T L  +LL EILP  S KW          D +  G+     
Sbjct: 54  DCGNG-----------TDRTCLTHSLLFEILPPDSPKWASFFVEGRCDDLDLKGA----- 97

Query: 130 PMKPEEEQTGSGQERGAAESGSVPAGEVGSRQETVDGCATGRVLVVLEEEEEERVKKKKK 189
             +  +E   SGQE+G          +  + Q   DG                       
Sbjct: 98  --RLNKEFGDSGQEQGGKRKKKKAKKKRANLQ---DG----------------------- 129

Query: 190 KGKKKRVQLKGEEVVVGEENGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSC 249
                      E V  G + G G E     EL  L P TS  S  QRKIK  Y +L++  
Sbjct: 130 ----------DENVKWGTDVGTGSEQ----ELTLLYPFTSSTSVIQRKIKRQYDELMKCQ 175

Query: 250 ESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNL 309
           ES ELTLAQV +F  CL  AR +L+ K++ I RKF+I KALL KADRSS DRL+QQIY L
Sbjct: 176 ESKELTLAQVRQFANCLINARSKLQHKADVIHRKFTITKALLYKADRSSFDRLQQQIYKL 235

Query: 310 EKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISF 369
           E +Q+RLEED +VYNWLQ QL+LSPA KKM E+   MEL  KS KP EN ++ EF D+SF
Sbjct: 236 ELEQKRLEEDTFVYNWLQQQLKLSPAYKKMLEIGTCMELMAKSEKPTENIDS-EFTDMSF 294

Query: 370 EELLAQEKKDSFWQKNWKSRMCT 392
           EELLAQEKKDSFWQ+N K R C+
Sbjct: 295 EELLAQEKKDSFWQRNGKLRSCS 317

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82570061|gb|ABB83615.1| CA-responsive protein [Brassica oleracea]

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 140/190 (73%), Gaps = 4/190 (2%)

Query: 207 EENGGGRENPGM---PELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFT 263
           +E+GG    P +   PE  CL P TS  SATQRKIK+ Y  LV+   +  LTLAQVGEF 
Sbjct: 139 DESGGDGLVPKLETKPEFVCLYPFTSSSSATQRKIKQQYDHLVKCNSAKGLTLAQVGEFA 198

Query: 264 KCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVY 323
            CL +A+ EL++KSE IKRK+SI KALL KADRSS DRLRQQIY LE +Q+R++ED  VY
Sbjct: 199 NCLIEAKNELQNKSEVIKRKYSITKALLFKADRSSFDRLRQQIYKLEMEQKRVQEDALVY 258

Query: 324 NWLQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQ 383
           NWLQ QL+LSPA KK+ E+ A MELK K+S  L +++ DE +DISFEELL QEKKDSFW 
Sbjct: 259 NWLQQQLKLSPAYKKVLEISASMELKDKTSTEL-DSQDDEVSDISFEELLEQEKKDSFWH 317

Query: 384 KNWKSRMCTR 393
           KN + R C+R
Sbjct: 318 KNGRLRTCSR 327

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182657|ref|NP_564031.2| uncharacterized protein [Arabidopsis thaliana] gi|332191498|gb|AEE29619.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  221 bits (562), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 157/231 (67%), Gaps = 22/231 (9%)

Query: 180 EEERVKKKKKKGKKKRVQLKGEEVVVGEENGGGRE----------NP---------GMPE 220
           E + VKKKKKK K +  + K +  + G+E+GG ++          NP           PE
Sbjct: 109 EGDHVKKKKKKKKNRGKKKKSD--IRGDESGGEKQLGEGEDGLVLNPRTDSISISENKPE 166

Query: 221 LGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETI 280
             CL P TS  SATQRKIK+ Y QLV+   +  LTLAQVGEF  CL +A+ EL+ KSE I
Sbjct: 167 FVCLYPFTSTSSATQRKIKQQYDQLVKCNNAKGLTLAQVGEFANCLIEAKNELQHKSEVI 226

Query: 281 KRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMF 340
           KRKFSI KALL KADRSS DRLRQQIY LE +Q+R+EED  VYNWLQ QL+LSPA KK+ 
Sbjct: 227 KRKFSITKALLFKADRSSFDRLRQQIYKLEMEQKRVEEDALVYNWLQQQLKLSPAYKKVL 286

Query: 341 EVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKNWKSRMC 391
           E+ A MELK KSS  L+N + DEF+DISFEELL QEKKDSFW KN + R C
Sbjct: 287 EISASMELKDKSSTELDNPD-DEFSDISFEELLEQEKKDSFWHKNGRLRTC 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850162|ref|XP_002892962.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338804|gb|EFH69221.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/183 (61%), Positives = 133/183 (72%), Gaps = 1/183 (0%)

Query: 200 GEEVVVGEENGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQV 259
           G+ VV+    G    +   PE  CL P TS  SATQRKIK+ Y QLV+   +  LTLAQV
Sbjct: 142 GDGVVLNPRTGSISISEKKPEFVCLYPFTSTSSATQRKIKQQYDQLVKCNNAKGLTLAQV 201

Query: 260 GEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEED 319
           GEF  CL +A+ EL+ KS+ IKRKFSI KALL KADRSS DRLRQQIY LE +Q+R+EED
Sbjct: 202 GEFANCLIEAKNELQHKSQVIKRKFSITKALLFKADRSSFDRLRQQIYKLEMEQKRVEED 261

Query: 320 VYVYNWLQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKD 379
             VYNWLQ QL+LSPA KK+ E+ A MELK KSS  L+  + DEF+DI+FEELL QEKKD
Sbjct: 262 ALVYNWLQQQLKLSPAYKKVLEISASMELKNKSSIELDKPD-DEFSDITFEELLEQEKKD 320

Query: 380 SFW 382
           SFW
Sbjct: 321 SFW 323

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480579|ref|XP_004155935.1| PREDICTED: uncharacterized protein LOC101226583 [Cucumis sativus]

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 146/365 (40%), Positives = 186/365 (50%), Gaps = 66/365 (18%)

Query: 28  FLTYKKIKRLQELENYANVLKGSLSANSNTTHTKTNTNNDNNNNNNNDNTLHQNQNAHAD 87
           F  YK++K++ E E +  ++   +         K +  N   +  N             D
Sbjct: 48  FFLYKRVKKI-EFEQHQQLISNPIEPE------KIDIGNSVADCGNG-----------TD 89

Query: 88  PTHLPQTLLLEILPSKSAKWDRLLSANAPQDPNSNGSGRHEPPMKPEEEQTGSGQERGAA 147
            T L  +LL EILP  S KW          D +    G ++       E   SGQE+G  
Sbjct: 90  RTCLTHSLLFEILPPDSPKWASFFVEGRCDDLDLKSDGLNK-------EFGDSGQEQGGK 142

Query: 148 ESGSVPAGEVGSRQETVDGCATGRVLVVLEEEEEERVKKKKKKGKKKRVQLKGEEVVVGE 207
                   +  + Q   DG            +E E+                      G 
Sbjct: 143 RKKKKAKKKRANLQ---DG------------DENEKW---------------------GT 166

Query: 208 ENGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLA 267
           + G G E     EL  L P TS  S  QRKIK  Y +L++  ES ELTLAQV +F  CL 
Sbjct: 167 DVGTGSEQ----ELTLLYPFTSSTSVIQRKIKRQYDELMKCQESKELTLAQVRQFANCLI 222

Query: 268 QAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQ 327
            AR +L+ K++ I RKF+I KALL KADRSS DRL+QQIY LE +Q+RLEED +VYNWLQ
Sbjct: 223 NARSKLQHKADVIHRKFTITKALLYKADRSSFDRLQQQIYKLELEQKRLEEDTFVYNWLQ 282

Query: 328 DQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKNWK 387
            QL+LSPA KKM E+   MEL  KS KP EN ++ EF D+SFEELLAQEKKDSFWQ+N K
Sbjct: 283 QQLKLSPAYKKMLEIGTCMELMAKSEKPTENIDS-EFTDMSFEELLAQEKKDSFWQRNGK 341

Query: 388 SRMCT 392
            R C+
Sbjct: 342 LRSCS 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9802740|gb|AAF99809.1|AC034257_1 Hypothetical protein [Arabidopsis thaliana]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/222 (57%), Positives = 152/222 (68%), Gaps = 22/222 (9%)

Query: 180 EEERVKKKKKKGKKKRVQLKGEEVVVGEENGGGRE----------NP---------GMPE 220
           E + VKKKKKK K +  + K +  + G+E+GG ++          NP           PE
Sbjct: 109 EGDHVKKKKKKKKNRGKKKKSD--IRGDESGGEKQLGEGEDGLVLNPRTDSISISENKPE 166

Query: 221 LGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETI 280
             CL P TS  SATQRKIK+ Y QLV+   +  LTLAQVGEF  CL +A+ EL+ KSE I
Sbjct: 167 FVCLYPFTSTSSATQRKIKQQYDQLVKCNNAKGLTLAQVGEFANCLIEAKNELQHKSEVI 226

Query: 281 KRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMF 340
           KRKFSI KALL KADRSS DRLRQQIY LE +Q+R+EED  VYNWLQ QL+LSPA KK+ 
Sbjct: 227 KRKFSITKALLFKADRSSFDRLRQQIYKLEMEQKRVEEDALVYNWLQQQLKLSPAYKKVL 286

Query: 341 EVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFW 382
           E+ A MELK KSS  L+N + DEF+DISFEELL QEKKDSFW
Sbjct: 287 EISASMELKDKSSTELDNPD-DEFSDISFEELLEQEKKDSFW 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447849|ref|XP_004141679.1| PREDICTED: uncharacterized protein LOC101218544 [Cucumis sativus]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/307 (44%), Positives = 167/307 (54%), Gaps = 48/307 (15%)

Query: 86  ADPTHLPQTLLLEILPSKSAKWDRLLSANAPQDPNSNGSGRHEPPMKPEEEQTGSGQERG 145
            D T L  +LL EILP  S KW          D +    G ++       E   SGQE+G
Sbjct: 88  TDRTCLTHSLLFEILPPDSPKWASFFVEGRCDDLDLKSDGLNK-------EFGDSGQEQG 140

Query: 146 AAESGSVPAGEVGSRQETVDGCATGRVLVVLEEEEEERVKKKKKKGKKKRVQLKGEEVVV 205
                     +  + Q   DG            +E E+                G +V  
Sbjct: 141 GKRKKKKAKKKRANLQ---DG------------DENEKW---------------GTDVGT 170

Query: 206 GEENGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKC 265
           G E           EL  L P TS  S  QRKIK  Y +L++  ES ELTLAQV +F  C
Sbjct: 171 GSEQ----------ELTLLYPFTSSTSVIQRKIKRQYDELMKCQESKELTLAQVRQFANC 220

Query: 266 LAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNW 325
           L  AR +L+ K++ I RKF+I KALL KADRSS DRL+QQIY LE +Q+RLEED +VYNW
Sbjct: 221 LINARSKLQHKADVIHRKFTITKALLYKADRSSFDRLQQQIYKLELEQKRLEEDTFVYNW 280

Query: 326 LQDQLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKN 385
           LQ QL+LSPA KKM E+   MEL  KS KP EN ++ EF D+SFEELLAQEKKDSFWQ+N
Sbjct: 281 LQQQLKLSPAYKKMLEIGTCMELMAKSEKPTENIDS-EFTDMSFEELLAQEKKDSFWQRN 339

Query: 386 WKSRMCT 392
            K R C+
Sbjct: 340 GKLRSCS 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454653|ref|XP_003597607.1| hypothetical protein MTR_2g100100 [Medicago truncatula] gi|355486655|gb|AES67858.1| hypothetical protein MTR_2g100100 [Medicago truncatula]

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 126/173 (72%), Gaps = 2/173 (1%)

Query: 220 ELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSET 279
           E  C+ P TS  S  QRKIK  Y +LV+S ES +LTL QV  F   L  AR EL+ K++ 
Sbjct: 121 ESDCMYPFTSSSSVLQRKIKLQYDELVKSNESKKLTLPQVVRFANSLIDARNELQHKADV 180

Query: 280 IKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKM 339
           I+RKF I KALL KADRSS DRL QQIY LE +Q+RLEED +VYN LQ QL+LSPA KKM
Sbjct: 181 IQRKFVITKALLCKADRSSFDRLHQQIYKLELEQKRLEEDAFVYNSLQYQLKLSPAYKKM 240

Query: 340 FEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKNWKSRMCT 392
            E+ A  E K K  + ++N + DEFADISFEELLAQEKKDSFWQKN KSR+C+
Sbjct: 241 LELGACTE-KAKQCEQVDNID-DEFADISFEELLAQEKKDSFWQKNGKSRVCS 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637568|gb|ACU19110.1| unknown [Glycine max]

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 107/184 (58%), Positives = 131/184 (71%), Gaps = 2/184 (1%)

Query: 209 NGGGRENPGMPELGCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQ 268
           +G G ++    E  C  P TS  S  QRKIK+ Y +LV+     +LTL QV +F   L  
Sbjct: 94  SGSGSDSGLRLESTCQYPFTSSSSVMQRKIKQQYDELVRCNHLKKLTLPQVVQFANSLVD 153

Query: 269 AREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQD 328
           AR EL+ K++ I+RKF I KALL KADRSS DRL QQIY LE +Q+RLEEDV+VYN LQ 
Sbjct: 154 ARNELQHKADVIQRKFVITKALLCKADRSSFDRLHQQIYKLELEQKRLEEDVFVYNSLQQ 213

Query: 329 QLRLSPACKKMFEVCADMELKTKSSKPLENTETDEFADISFEELLAQEKKDSFWQKNWKS 388
           QL+LSPA +KM E+ A ME K KSS+  EN + D+FA+ISFEELLAQEKKDSFWQKN KS
Sbjct: 214 QLKLSPAYQKMLELGACME-KEKSSELGENRD-DDFAEISFEELLAQEKKDSFWQKNGKS 271

Query: 389 RMCT 392
           R+ +
Sbjct: 272 RLSS 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
COG3937	108	Uncharacterized conserved protein [Function unknow	93.93
PF02060	129	ISK_Channel: Slow voltage-gated potassium channel;	86.33

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=93.93  E-value=0.33  Score=42.08  Aligned_cols=76  Identities=33%  Similarity=0.526  Sum_probs=58.3

Q ss_pred             chhHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHH----HHHHHhhhhhhhhhHHHHHHHHhhcCC----------c
Q 016227          231 GSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQ----AREELEDKSETIKRKFSIQKALLSKAD----------R  296 (393)
Q Consensus       231 ~sAtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVd----ARnEL~~KSE~iqRkftI~KALLskad----------R  296 (393)
                      ...+--+.+..-|+||+   -..+|..|-.+|..-|+.    ++.++-.|   ++|++.+   ||++..          +
T Consensus        19 ~a~~~ek~~klvDelVk---kGeln~eEak~~vddl~~q~k~~~~e~e~K---~~r~i~~---ml~~~~~~r~~~~~~l~   89 (108)
T COG3937          19 AAETAEKVQKLVDELVK---KGELNAEEAKRFVDDLLRQAKEAQGELEEK---IPRKIEE---MLSDLEVARQSEMDELT   89 (108)
T ss_pred             HHHHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHhhhHHHh---hhHHHHH---HHhhccccccchHHHHH
Confidence            45677888899999986   568999999999888774    55566655   8999877   455433          6


Q ss_pred             chHHHHHHHHHHHHHHHHh
Q 016227          297 SSIDRLRQQIYNLEKQQRR  315 (393)
Q Consensus       297 SS~DRL~qQIykLE~EqkR  315 (393)
                      +.+|+|.+||.+||.+++|
T Consensus        90 ~rvd~Lerqv~~Lenk~kr  108 (108)
T COG3937          90 ERVDALERQVADLENKLKR  108 (108)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            7788888888888888765

>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=86.33  E-value=0.97  Score=40.33  Aligned_cols=34  Identities=38%  Similarity=0.788  Sum_probs=25.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016227            3 ENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRLQE   39 (393)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (393)
                      .+|-.+++|+|++||   -||++.++|.|-+-||+..
T Consensus        40 ~~~~~lYIL~vmgfF---gff~~gImlsyvRSKK~E~   73 (129)
T PF02060_consen   40 DDNEYLYILVVMGFF---GFFTVGIMLSYVRSKKREH   73 (129)
T ss_dssp             -SSTT-HHHHHHHHH---HHHHHHHHHHHHHHHHH--
T ss_pred             CCceeehHHHHHHHH---HHHHHHHHHHHHHHhhhcc
Confidence            456678888888887   4788999999999988764

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 25/258 (9%), Positives = 69/258 (26%), Gaps = 70/258 (27%)

Query: 183 RVKKKKKKGKKKRVQLKGEEVVVGEENGGGRENPGMPELG--CLCPLT------------ 228
           R++   K  ++  ++L+  + V+ +         G+   G   +                
Sbjct: 133 RLQPYLKL-RQALLELRPAKNVLID---------GVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 229 -----SMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDK------- 276
                ++ +      + +   L +     +       + +  +      ++ +       
Sbjct: 183 KIFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 277 ---------------SETIKRKFSIQ-KALLSKADRSSIDRL---RQQIYNLEKQQRRLE 317
                          ++     F++  K LL+   +   D L        +L+     L 
Sbjct: 241 KPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 318 ED---VYVYNWLQDQLRLSP--ACK------KMF-EVCADMELKTKSSKPLENTETDEFA 365
            D     +  +L  + +  P            +  E   D      + K +   +     
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 366 DISFEELLAQEKKDSFWQ 383
           + S   L   E +  F +
Sbjct: 360 ESSLNVLEPAEYRKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.98
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	87.2
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	86.13
2k21_A	138	Potassium voltage-gated channel subfamily E member	81.87

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.98  E-value=0.94  Score=46.54  Aligned_cols=13  Identities=38%  Similarity=0.353  Sum_probs=9.3

Q ss_pred             hHHHHHHHHHHhc
Q 016227          319 DVYVYNWLQDQLR  331 (393)
Q Consensus       319 Da~VYN~LQqQLK  331 (393)
                      |..-|+.+|.||.
T Consensus       174 d~~sY~~~QKQLe  186 (562)
T 3ghg_A          174 DLKDYEDQQKQLE  186 (562)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHH
Confidence            3345999998874

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=87.20  E-value=0.75  Score=37.86  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=31.9

Q ss_pred             chHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhcc
Q 016227          297 SSIDRLRQQIYN----LEKQQRRLEEDVYVYNWLQDQLRL  332 (393)
Q Consensus       297 SS~DRL~qQIyk----LE~EqkRLekDa~VYN~LQqQLKl  332 (393)
                      +-|.|||+||+.    ||.|.++|+++...+..+|..+|.
T Consensus        36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~   75 (96)
T 1t3j_A           36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKL   75 (96)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            579999999975    788999999999999999988774

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=86.13  E-value=0.71  Score=37.07  Aligned_cols=43  Identities=7%  Similarity=0.079  Sum_probs=30.4

Q ss_pred             CCCcccccchhHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhH
Q 016227          223 CLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCL  266 (393)
Q Consensus       223 c~yPfTS~~sAtQRRIkeqYDELvran~aK~LTLaQV~eF~NcL  266 (393)
                      ..-.+..++....++|.+.|+.+ -.+....||..++..++..|
T Consensus        44 ~~~~~~~ls~~~~~~l~~~F~~~-D~d~~G~i~~~el~~~l~~l   86 (196)
T 3dtp_E           44 GSNVFAMFTQHQVQEFKEAFQLI-DQDKDGFISKNDIRATFDSL   86 (196)
T ss_dssp             CCCSSCSSCTTTHHHHHHHHHHH-CCSCSSBCCHHHHHHHHHTT
T ss_pred             chhhhhhCCHHHHHHHHHHHHHH-CCCCCCcCCHHHHHHHHHHh
Confidence            33444555666677888888754 56778899999988877654

>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}

Probab=81.87  E-value=1  Score=39.37  Aligned_cols=32  Identities=38%  Similarity=0.736  Sum_probs=26.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016227            3 ENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRL   37 (393)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (393)
                      ..+-.|++|+|++||   -||++.+.|.|-+-||+
T Consensus        49 ~~~~ylYIL~vmgff---gff~~GImLsYiRSKk~   80 (138)
T 2k21_A           49 GKLEALYVLMVLGFF---GFFTLGIMLSYIRSKKL   80 (138)
T ss_dssp             CSSTTCHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             CCceeehHHHHHHHH---HHHHHHHHHHHhHhhhc
Confidence            345678888888887   47889999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00