Citrus Sinensis ID: 016250

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MGGRSSREASWRQDSSFRSTSSSWDPQTGYLQSPYGQESQNYPPQTYPPPQTYSTQQYYPSSEEHSGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNVPERVALPPPVYGATTSFHSPKPFHSTSFKPNAPSYQESQPVSSAPPATSSTMKTSFAPFA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHccccEEcEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccEEEEEHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccEEEEEEccccccccccccccccccccHHHcccccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHccccEEEEEEEEccEEEEEcccccccccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHcccccHHHHcEEEEEcHHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mggrssreaswrqdssfrstssswdpqtgylqspygqesqnyppqtypppqtystqqyypsseehsgntrkldrrysriaddykSLDQVTEALARAglessnlivgidftksnewtgkrsfnrrslhyigdglnpYEQAISIIGKtlavfdednlipcygfgdggrfcyGFEEVLSRYREIvpnlklagptsfapVIEMAMSIVEQSGGQYHVLLIIAdgqvtrsvdtvrgclspqeqKTVDAIVKASELPLSIVLVGvgdgpwdmmkefddniparafdnfqfvnFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILgrrkgnvpervalpppvygattsfhspkpfhstsfkpnapsyqesqpvssappatsstmktsfapfa
mggrssreaswrqdssfrstssswdpqTGYLQSPYGQESQNYPPQTYPPPQTYSTQQyypsseehsgntrkldrRYSRIADDYKSLDQVTEALAraglessnlivgidftksnewtgkrsfNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAivkaselpLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNVPERVALPPPVYGATTSFHSPKPFHSTSFKPNAPSYQESQPvssappatsstmktsfapfa
MGGRSSREAswrqdssfrstssswdPQTGYLQSPYGQESQNyppqtypppqtystqqyypssEEHSGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNVPERVALPPPVYGATTSFHSPKPFHSTSFKPNAPSYQESQPVssappatsstMKTSFAPFA
**********************************************************************************YKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMS**********EFALSALMEIPSQYKATIELNILGRRKGNV***V********************************************************
***************************************************************************YSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNE**********SLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTV**C**PQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMS********ETEFALSALMEIPSQYKATIELNI*************************************************************TSFAPFA
*************************PQTGYLQSPYGQESQNYPPQTYPPPQ********************LDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNVPERVALPPPVYGATTSFHSPKPFHSTSFKP******************************
**************SSFRSTSSSWDPQTGYLQSPYGQESQNYPPQTYPPPQTYSTQQY**SS****GNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILG******************************************************************
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MGGRSSREASWRQDSSFRSTSSSWDPQTGYLQSPYGQESQNYPPQTYPPPQTYSTQQYYPSSEEHSGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNVPERVALPPPVYGATTSFHSPKPFHSTSFKPNAPSYQESQPVSSAPPATSSTMKTSFAPFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
Q9LY87468 E3 ubiquitin-protein liga yes no 0.803 0.673 0.740 1e-142
Q9SS90489 E3 ubiquitin-protein liga no no 0.798 0.640 0.728 1e-135
Q092217705 Copine family protein 2 O no no 0.586 0.029 0.485 1e-64
Q99829537 Copine-1 OS=Homo sapiens yes no 0.584 0.426 0.297 1e-22
Q7YXU4600 Copine-A OS=Dictyostelium no no 0.489 0.32 0.346 1e-22
Q5BJS7553 Copine-9 OS=Rattus norveg yes no 0.505 0.358 0.342 1e-22
Q1RLL3553 Copine-9 OS=Mus musculus yes no 0.505 0.358 0.342 2e-22
Q8IYJ1553 Copine-9 OS=Homo sapiens no no 0.505 0.358 0.342 2e-22
Q9HCH3593 Copine-5 OS=Homo sapiens no no 0.505 0.333 0.322 3e-22
Q8JZW4593 Copine-5 OS=Mus musculus no no 0.505 0.333 0.322 6e-22
>sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1 Back     alignment and function desciption
 Score =  503 bits (1296), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/335 (74%), Positives = 278/335 (82%), Gaps = 20/335 (5%)

Query: 53  YSTQQYY-------PSSEEHSGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIV 105
           YSTQ Y        PS    S N ++L+R+YS+I+DDY SL+QVTEALARAGLESSNLIV
Sbjct: 66  YSTQPYSAPSYSAPPSQSYGSDNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIV 125

Query: 106 GIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG 165
           GIDFTKSNEWTG RSFNR+SLH+IG   NPYEQAI+IIG+TLA FDEDNLIPCYGFGD  
Sbjct: 126 GIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDAS 185

Query: 166 -------------RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYH 212
                        RFC GFEEVLSRY+EIVP LKLAGPTSFAP+I+MAM+IVEQSGGQYH
Sbjct: 186 THDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQYH 245

Query: 213 VLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 272
           VL+IIADGQVTRSVDT  G LSPQEQKTVDAIV+AS+LPLSIVLVGVGDGPWDMM+EFDD
Sbjct: 246 VLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDD 305

Query: 273 NIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNV 332
           NIPARAFDNFQFVNFTEIM+KN  Q+ KETEFALSALMEIP QYKATIELN+LGRR G +
Sbjct: 306 NIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYI 365

Query: 333 PERVALPPPVYGATTSFHSPKPFHSTSFKPNAPSY 367
           PER  LPPP+ G ++S++SPKP    SFKP+ P +
Sbjct: 366 PERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPH 400
E3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked multiubiquitin chains. Regulates apical dominance by acting on the auxin transport proteins abundance.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9SS90|RGLG1_ARATH E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1 Back     alignment and function description
>sp|Q09221|CPNA2_CAEEL Copine family protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=4 Back     alignment and function description
>sp|Q99829|CPNE1_HUMAN Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1 Back     alignment and function description
>sp|Q7YXU4|CPNA_DICDI Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 SV=1 Back     alignment and function description
>sp|Q5BJS7|CPNE9_RAT Copine-9 OS=Rattus norvegicus GN=Cpne9 PE=2 SV=1 Back     alignment and function description
>sp|Q1RLL3|CPNE9_MOUSE Copine-9 OS=Mus musculus GN=Cpne9 PE=2 SV=1 Back     alignment and function description
>sp|Q8IYJ1|CPNE9_HUMAN Copine-9 OS=Homo sapiens GN=CPNE9 PE=1 SV=3 Back     alignment and function description
>sp|Q9HCH3|CPNE5_HUMAN Copine-5 OS=Homo sapiens GN=CPNE5 PE=1 SV=2 Back     alignment and function description
>sp|Q8JZW4|CPNE5_MOUSE Copine-5 OS=Mus musculus GN=Cpne5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
255572066461 copine, putative [Ricinus communis] gi|2 0.997 0.848 0.722 1e-159
225452296461 PREDICTED: E3 ubiquitin-protein ligase R 0.928 0.789 0.708 1e-156
224055595376 predicted protein [Populus trichocarpa] 0.821 0.856 0.795 1e-150
449450054447 PREDICTED: E3 ubiquitin-protein ligase R 0.974 0.854 0.693 1e-150
297811563466 hypothetical protein ARALYDRAFT_488284 [ 0.887 0.746 0.713 1e-146
60459371484 RING-finger protein [Capsicum annuum] 0.959 0.776 0.679 1e-146
359473120442 PREDICTED: E3 ubiquitin-protein ligase R 0.982 0.871 0.656 1e-141
356512040491 PREDICTED: E3 ubiquitin-protein ligase R 0.994 0.794 0.611 1e-141
396924951472 RING-type ubiquitin ligase [Mesembryanth 0.760 0.631 0.788 1e-141
449489490456 PREDICTED: E3 ubiquitin-protein ligase R 0.895 0.769 0.662 1e-140
>gi|255572066|ref|XP_002526974.1| copine, putative [Ricinus communis] gi|223533726|gb|EEF35461.1| copine, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 305/422 (72%), Positives = 336/422 (79%), Gaps = 31/422 (7%)

Query: 1   MGGRSSREASWRQDSSFRSTSSSWDPQTGYLQSPYGQES--QNYPPQT-YPPPQTYST-- 55
           MGG +S++ S R +SS RS+SSSWD Q GYLQ  Y QES   NY PQ+ YP   TY +  
Sbjct: 1   MGGNNSKDRSLRSNSSIRSSSSSWDSQHGYLQPSYAQESFSYNYSPQSPYPTQHTYGSEQ 60

Query: 56  -----------QQYYPSSEEHSGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLI 104
                      QQY+ SS+   G  R+LDRRYSRIADDYKSLDQVTEALA+AGLESSNLI
Sbjct: 61  QYQDYSGGDIRQQYHSSSQNFGGQRRQLDRRYSRIADDYKSLDQVTEALAQAGLESSNLI 120

Query: 105 VGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG 164
           VGIDFTKSNEWTG RS+NRRSLH+IGDGLNPYEQAISIIGKTLA FDEDNLIPC+GFGD 
Sbjct: 121 VGIDFTKSNEWTGARSYNRRSLHHIGDGLNPYEQAISIIGKTLAAFDEDNLIPCFGFGDA 180

Query: 165 G-------------RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQY 211
                         RFC GFEEVLSRYREIVPNL+LAGPTSFAP+IEMA +IVEQSGGQY
Sbjct: 181 STHDQDVFCFYPDERFCNGFEEVLSRYREIVPNLRLAGPTSFAPIIEMATTIVEQSGGQY 240

Query: 212 HVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 271
           HVLLIIADGQVTRSVDT R  LSPQE++TV+AIV+AS+LPLSIVLVGVGDGPWD M+EFD
Sbjct: 241 HVLLIIADGQVTRSVDTARDQLSPQEKRTVEAIVEASKLPLSIVLVGVGDGPWDTMREFD 300

Query: 272 DNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGN 331
           DNIPAR FDNFQFVNFTEIMSK  D +RKETEFAL+ALMEIPSQYKATIELNILGR KGN
Sbjct: 301 DNIPAREFDNFQFVNFTEIMSKQVDASRKETEFALAALMEIPSQYKATIELNILGRHKGN 360

Query: 332 VPERVALPPPVYGATTSFHSPKPFHSTSFKPNAPSY-QESQPVSSAPPATSSTMKTSFAP 390
           +PERVALPPP+YGA  SF+SPKP HST FKP+ PS+  +S P SSAP A SS       P
Sbjct: 361 IPERVALPPPLYGA-ASFNSPKPSHSTGFKPSVPSFPVDSPPTSSAPTAPSSNYDNQLCP 419

Query: 391 FA 392
             
Sbjct: 420 IC 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452296|ref|XP_002271885.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Vitis vinifera] gi|296087586|emb|CBI34842.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055595|ref|XP_002298557.1| predicted protein [Populus trichocarpa] gi|222845815|gb|EEE83362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450054|ref|XP_004142779.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297811563|ref|XP_002873665.1| hypothetical protein ARALYDRAFT_488284 [Arabidopsis lyrata subsp. lyrata] gi|297319502|gb|EFH49924.1| hypothetical protein ARALYDRAFT_488284 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|60459371|gb|AAX20031.1| RING-finger protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|359473120|ref|XP_002282202.2| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Vitis vinifera] gi|296081383|emb|CBI16816.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512040|ref|XP_003524729.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] Back     alignment and taxonomy information
>gi|396924951|gb|AFN89139.1| RING-type ubiquitin ligase [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|449489490|ref|XP_004158327.1| PREDICTED: E3 ubiquitin-protein ligase RGLG1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
TAIR|locus:2145643468 RGLG2 "RING domain ligase2" [A 0.770 0.645 0.765 4.8e-126
TAIR|locus:2084218489 RGLG1 "RING domain ligase1" [A 0.75 0.601 0.755 3.2e-120
TAIR|locus:2008570453 AT1G67800 [Arabidopsis thalian 0.752 0.651 0.715 3.5e-114
TAIR|locus:2206395401 RGLG4 "RING DOMAIN LIGASE 4" [ 0.767 0.750 0.559 7.5e-89
TAIR|locus:2160821367 RGLG3 "RING DOMAIN LIGASE 3" [ 0.760 0.811 0.587 3.7e-87
DICTYBASE|DDB_G0272196284 DDB_G0272196 "copine family pr 0.599 0.827 0.492 5e-60
WB|WBGene000064951107 cpna-1 [Caenorhabditis elegans 0.599 0.212 0.452 5e-51
UNIPROTKB|E1BID8593 CPNE5 "Uncharacterized protein 0.604 0.399 0.328 2.6e-22
ZFIN|ZDB-GENE-040426-1398574 cpne5 "copine V" [Danio rerio 0.507 0.346 0.341 3.9e-22
MGI|MGI:2385908593 Cpne5 "copine V" [Mus musculus 0.596 0.394 0.332 9e-22
TAIR|locus:2145643 RGLG2 "RING domain ligase2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
 Identities = 241/315 (76%), Positives = 271/315 (86%)

Query:    66 SGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRS 125
             S N ++L+R+YS+I+DDY SL+QVTEALARAGLESSNLIVGIDFTKSNEWTG RSFNR+S
Sbjct:    86 SDNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKS 145

Query:   126 LHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG-------------RFCYGFE 172
             LH+IG   NPYEQAI+IIG+TLA FDEDNLIPCYGFGD               RFC GFE
Sbjct:   146 LHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFE 205

Query:   173 EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGC 232
             EVLSRY+EIVP LKLAGPTSFAP+I+MAM+IVEQSGGQYHVL+IIADGQVTRSVDT  G 
Sbjct:   206 EVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQ 265

Query:   233 LSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMS 292
             LSPQEQKTVDAIV+AS+LPLSIVLVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIM+
Sbjct:   266 LSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMA 325

Query:   293 KNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNVPERVALPPPVYGATTSFHSP 352
             KN  Q+ KETEFALSALMEIP QYKATIELN+LGRR G +PER  LPPP+ G ++S++SP
Sbjct:   326 KNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSP 385

Query:   353 KPFHSTSFKPNAPSY 367
             KP    SFKP+ P +
Sbjct:   386 KPSRLPSFKPSVPPH 400
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA
GO:0009690 "cytokinin metabolic process" evidence=IGI;RCA
GO:0009850 "auxin metabolic process" evidence=IGI
GO:0005634 "nucleus" evidence=IDA
GO:0080148 "negative regulation of response to water deprivation" evidence=IGI
TAIR|locus:2084218 RGLG1 "RING domain ligase1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008570 AT1G67800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206395 RGLG4 "RING DOMAIN LIGASE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160821 RGLG3 "RING DOMAIN LIGASE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272196 DDB_G0272196 "copine family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00006495 cpna-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BID8 CPNE5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1398 cpne5 "copine V" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2385908 Cpne5 "copine V" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LY87RGLG2_ARATH6, ., 3, ., 2, ., -0.74020.80350.6730yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
cd01459254 cd01459, vWA_copine_like, VWA Copine: Copines are 4e-97
pfam07002146 pfam07002, Copine, Copine 3e-63
smart00327175 smart00327, VWA, von Willebrand factor (vWF) type 1e-06
>gnl|CDD|238736 cd01459, vWA_copine_like, VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium Back     alignment and domain information 
 Score =  289 bits (742), Expect = 4e-97
 Identities = 119/274 (43%), Positives = 147/274 (53%), Gaps = 56/274 (20%)

Query: 79  IADDYKSLDQVT----------EALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHY 128
           I   YKS  +VT               AGLES NLIV IDFTKSN W G++    RSLHY
Sbjct: 1   IKKVYKSSGEVTLTDCRVQPTFLDYRSAGLES-NLIVAIDFTKSNGWPGEK----RSLHY 55

Query: 129 I-GDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGD----------------GGRFCYGF 171
           I    LNPY++AI I+G+ L  +D D LIP +GFG                     C GF
Sbjct: 56  ISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPECQGF 115

Query: 172 EEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTV 229
           E VL  YRE +PN+ L+GPT+FAPVI  A +I + S    +YH+LLII DG++T   +  
Sbjct: 116 EGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNE-- 173

Query: 230 RGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD-------NIPARAFDNF 282
                     T+ AIV+AS+ PLSIV+VGVGDGP+D M+  DD       +      D  
Sbjct: 174 ----------TIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIV 223

Query: 283 QFVNFTEIMSKNHDQTRKETEFALSALMEIPSQY 316
           QFV FTE MS        E   A +AL EIPSQ 
Sbjct: 224 QFVPFTEFMSNA---GNPEAALATAALAEIPSQL 254

They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding. Length = 254
>gnl|CDD|219263 pfam07002, Copine, Copine Back     alignment and domain information
>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
KOG1327529 consensus Copine [Signal transduction mechanisms] 100.0
cd01459254 vWA_copine_like VWA Copine: Copines are phospholip 100.0
PF07002146 Copine: Copine; InterPro: IPR010734 This represent 100.0
PF10138200 vWA-TerF-like: vWA found in TerF C terminus ; Inte 100.0
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 99.83
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 99.0
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.93
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 98.77
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 98.75
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.73
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 98.71
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.65
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.61
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.56
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 98.53
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 98.46
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.44
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.37
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 98.35
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.34
cd01470198 vWA_complement_factors Complement factors B and C2 98.31
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 98.28
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 98.24
PF13768155 VWA_3: von Willebrand factor type A domain 98.23
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 98.14
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 98.12
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 98.11
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.07
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 98.04
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 97.95
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 97.94
PRK13685326 hypothetical protein; Provisional 97.92
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 97.91
PF00092178 VWA: von Willebrand factor type A domain; InterPro 97.84
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 97.84
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 97.83
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 97.73
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 97.67
PRK13406584 bchD magnesium chelatase subunit D; Provisional 97.57
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.51
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 97.35
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 97.33
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 97.29
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 97.23
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 97.21
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.19
PF05762222 VWA_CoxE: VWA domain containing CoxE-like protein; 97.03
PRK10997487 yieM hypothetical protein; Provisional 96.46
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 96.27
COG4245207 TerY Uncharacterized protein encoded in toxicity p 95.03
COG2425437 Uncharacterized protein containing a von Willebran 94.33
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 92.99
PF11775219 CobT_C: Cobalamin biosynthesis protein CobT VWA do 89.84
TIGR01651600 CobT cobaltochelatase, CobT subunit. This model de 84.06
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 82.07
COG4548637 NorD Nitric oxide reductase activation protein [In 82.04
>KOG1327 consensus Copine [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-74  Score=592.01  Aligned_cols=241  Identities=48%  Similarity=0.727  Sum_probs=228.3

Q ss_pred             cccccccccccccccchHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCC-CCCHHHHHHHHHhhccc
Q 016250           70 RKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLA  148 (392)
Q Consensus        70 ~~~~~~~~~i~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~-~~N~YqqAI~~Ig~vl~  148 (392)
                      ++.+.+++.+.+.|+++++++.++..+|++++||+||||||+||+|++.    +.||||+++ .+|+||+||++||++|+
T Consensus       255 k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~----~sSLHyi~p~~~N~Y~~Ai~~vG~~lq  330 (529)
T KOG1327|consen  255 KSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRN----PSSLHYIDPHQPNPYEQAIRSVGETLQ  330 (529)
T ss_pred             hcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCC----CCcceecCCCCCCHHHHHHHHHhhhhc
Confidence            4567789999999999999999999999999999999999999999875    459999995 78999999999999999


Q ss_pred             ccCCCCccceeecCCC------------------CCCcCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC--
Q 016250          149 VFDEDNLIPCYGFGDG------------------GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--  208 (392)
Q Consensus       149 ~yDdD~~ipvfGFGa~------------------~~~c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~--  208 (392)
                      .||.|++||||||||+                  +++|+|++|||+||++++|+|+|+|||+|+|||++|+++++++.  
T Consensus       331 ~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~  410 (529)
T KOG1327|consen  331 DYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNT  410 (529)
T ss_pred             ccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccC
Confidence            9999999999999999                  57899999999999999999999999999999999999999986  


Q ss_pred             -CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCcccccccCCCCCC-------cccc
Q 016250          209 -GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPA-------RAFD  280 (392)
Q Consensus       209 -~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~LDd~l~~-------R~~D  280 (392)
                       ++||||||||||+|||            |++|++|||.||++|||||||||||+||++|++||++.+.       |.||
T Consensus       411 ~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD  478 (529)
T KOG1327|consen  411 AGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERD  478 (529)
T ss_pred             CcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCccccccccccccc
Confidence             8999999999999998            8999999999999999999999999999999999998876       7899


Q ss_pred             ceecccchhhccccCCcchhHHHHHHHHHHHhHHHHHHHHHhcccC
Q 016250          281 NFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILG  326 (392)
Q Consensus       281 NvqFV~f~di~~kn~~~~~~d~~lA~~aL~EIP~Ql~ay~~lgiL~  326 (392)
                      |||||+|+|||.++.+.+.++++||+++|+|||+||++||+++.|.
T Consensus       479 ~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~  524 (529)
T KOG1327|consen  479 NVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGIL  524 (529)
T ss_pred             ceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence            9999999999998877888999999999999999999999995444

>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium Back     alignment and domain information
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines Back     alignment and domain information
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain Back     alignment and domain information
>TIGR01651 CobT cobaltochelatase, CobT subunit Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 55/381 (14%), Positives = 105/381 (27%), Gaps = 140/381 (36%)

Query: 25  DPQTGYLQSPYGQESQNYPPQTYPPPQTYSTQQYYPSSEEHSGNTRKLDRRYSRIADDYK 84
                +L SP   E +    Q     + Y  Q+       ++ N        SR+    +
Sbjct: 88  RINYKFLMSPIKTEQR----QPSMMTRMYIEQR----DRLYNDNQVFAKYNVSRL----Q 135

Query: 85  SLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISII 143
              ++ +AL    L  +  ++                    +   G  G           
Sbjct: 136 PYLKLRQALLE--LRPAKNVL--------------------ID--GVLG----------S 161

Query: 144 GKT-LA--VFDEDNLIPCYGFG----DGGRFCYGFEEVL----SRYREIVPNLKLAGPTS 192
           GKT +A  V     +     F     +    C   E VL        +I PN   +    
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWT-SRSDH 219

Query: 193 FAPVIEMAMSIVEQ-----SGGQY-HVLLII----------------------ADGQVTR 224
            + +     SI  +         Y + LL++                         QVT 
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 225 SVDTVRGC----------LSPQEQKTVDAIV---KASEL--------PLSIVLVGVGDGP 263
            +                L+P E K++       +  +L        P  + ++      
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----- 334

Query: 264 WDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSAL--MEIPSQYKATIE 321
            + +++      A  +DN++ VN         D+     E +L+ L   E    +     
Sbjct: 335 -ESIRDG----LAT-WDNWKHVNC--------DKLTTIIESSLNVLEPAEYRKMFD---R 377

Query: 322 LNILGRRKGNVPERVALPPPV 342
           L++        P    +P  +
Sbjct: 378 LSVF-------PPSAHIPTIL 391
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 98.62
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 98.57
3ibs_A218 Conserved hypothetical protein BATB; structural ge 98.52
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 98.48
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 98.45
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 98.36
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 98.35
4fx5_A 464 VON willebrand factor type A; structural genomics, 98.32
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 98.28
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 98.23
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 98.19
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 98.19
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 98.18
2b2x_A223 Integrin alpha-1; computational design, antibody-a 98.15
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 98.14
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 98.13
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 98.1
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 98.04
3hrz_D 741 Complement factor B; serine protease, glycosilated 97.99
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 97.97
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 97.91
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 97.73
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 97.61
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 97.24
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 97.05
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 96.98
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 96.92
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 96.56
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 89.97
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
Probab=98.62  E-value=6.7e-07  Score=83.80  Aligned_cols=143  Identities=15%  Similarity=0.161  Sum_probs=99.9

Q ss_pred             eeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccCC---CCccceeecCCCC--------CC
Q 016250          100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPY-EQAISIIGKTLAVFDE---DNLIPCYGFGDGG--------RF  167 (392)
Q Consensus       100 s~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~Y-qqAI~~Ig~vl~~yDd---D~~ipvfGFGa~~--------~~  167 (392)
                      .+++++.||-|+||+..                  .+ +.+...+..++..|+.   +-.|-++.|+...        ..
T Consensus        21 ~~div~vlD~SgSM~~~------------------~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~   82 (281)
T 4hqf_A           21 EVDLYLLMDGSGSIRRH------------------NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA   82 (281)
T ss_dssp             CEEEEEEEECCCCSSTH------------------HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC
T ss_pred             ceeEEEEEeCCCCcCHH------------------HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC
Confidence            37899999999999621                  23 5555555566666654   6679999999871        11


Q ss_pred             cCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCC---ccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 016250          168 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG---QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI  244 (392)
Q Consensus       168 c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~---~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaI  244 (392)
                      -.+.+.++++-.++.......|-|+....|+.|.+.....+.   .-.++|+||||..++            .....+++
T Consensus        83 ~~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~~~~~~  150 (281)
T 4hqf_A           83 SKNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQDSLKES  150 (281)
T ss_dssp             SSCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHHHHHHH
T ss_pred             ccCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHHHHHHH
Confidence            124566666555443334468999999999999887765432   457889999998875            34556666


Q ss_pred             HHhcCCCcEEEEEecccC-CcccccccCC
Q 016250          245 VKASELPLSIVLVGVGDG-PWDMMKEFDD  272 (392)
Q Consensus       245 v~AS~lPLSII~VGVGdg-~F~~M~~LDd  272 (392)
                      .++-..-+-|..||||+. +-+.|+.+-+
T Consensus       151 ~~l~~~gv~i~~igiG~~~~~~~L~~iA~  179 (281)
T 4hqf_A          151 RKLSDRGVKIAVFGIGQGINVAFNRFLVG  179 (281)
T ss_dssp             HHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred             HHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence            666677899999999985 5666676643
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.45
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 98.25
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 98.04
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 97.84
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 97.77
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 97.76
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 97.75
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 97.68
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 97.56
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 97.5
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 97.43
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 97.24
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 87.57
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.9e-07  Score=78.33  Aligned_cols=142  Identities=13%  Similarity=0.125  Sum_probs=96.3

Q ss_pred             eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-CccceeecCCCCC----CcCCHHHHH
Q 016250          101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDED-NLIPCYGFGDGGR----FCYGFEEVL  175 (392)
Q Consensus       101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD-~~ipvfGFGa~~~----~c~G~egVL  175 (392)
                      +.++++||-|+|++.                   .+++....+..++..|... -.+-+.-|+....    .-...+.+.
T Consensus         6 ~Div~llD~S~Sm~~-------------------~~~~~k~~~~~~~~~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~   66 (181)
T d1shux_           6 FDLYFVLDKSGSVAN-------------------NWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKIS   66 (181)
T ss_dssp             EEEEEEEECSGGGGG-------------------GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEECCHHHHH
T ss_pred             eEEEEEEeCCCCccc-------------------CHHHHHHHHHHHHHHhcCCCCEEEEEEeecceEEEEEecCCHHHHH
Confidence            689999999998841                   1234445555555666553 3478888988721    112333333


Q ss_pred             HHHHhhcCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcE
Q 016250          176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS  253 (392)
Q Consensus       176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~--~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLS  253 (392)
                      +. .+.++.+...|.|+....|+.+.+.+....  ....++|+||||..++.          +.....++...+-+.-+.
T Consensus        67 ~~-l~~l~~~~~~g~t~~~~al~~~~~~~~~~~~~~~~~~ivliTDG~~~~~----------~~~~~~~~~~~~k~~gv~  135 (181)
T d1shux_          67 KG-LEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAKISRSLGAS  135 (181)
T ss_dssp             HH-HHHHHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHHHHHHTTCE
T ss_pred             HH-hhhcccccCCCcchHHHHHHHHHHHhhhcccCCCceEEEEecCCCCCCC----------ccHHHHHHHHHHHHCCCE
Confidence            33 233455667788999999999998876542  34588999999988752          234445566667778899


Q ss_pred             EEEEecccCCcccccccCC
Q 016250          254 IVLVGVGDGPWDMMKEFDD  272 (392)
Q Consensus       254 II~VGVGdg~F~~M~~LDd  272 (392)
                      |+.||||+.+-+.|+++-+
T Consensus       136 v~~vgig~~~~~~L~~ia~  154 (181)
T d1shux_         136 VYCVGVLDFEQAQLERIAD  154 (181)
T ss_dssp             EEEEECSSCCHHHHHHHSS
T ss_pred             EEEEEeCccCHHHHHHHhC
Confidence            9999999877777777753
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure