Citrus Sinensis ID: 016283

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEAAATAGACLPALLDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDNHHHHLFPVNGLFETSAVTNKHILINNITENIGNNTSPSMLFKALLSHQDFSCCNELAPSPKHCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSKIQPNPYSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVVEKSWPLGA
Secondary Structure (PSIPRED)
cccHHHHcccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEccEEcccccccccccccEEEEEEccccccccccccccEEEEEEEEccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEEEccccccccccHHccccccEEEEEcccccccccccccccccccccEEEcccccEEEccccccEEEEEEEEEEEEccccccccccEEEEEEEccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MEDVLSElngdevneqglppgfrfhptdEELITFYLASKVFngtfcgveiaevdlnrcepwelpdvakmgekEWYFFSlrdrkyptglrtnratgagywkatgkdrevcsgssgallGMKKTLVFykgraprgektkWVMHEYRldgdfsyrhtCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEAAATAGAClpalldapgpatTTLLLECQsqnhnpilenlpnhfvnqqqdnhhhhlfpvnglfetsavtnKHILINNitenignntsPSMLFKALLShqdfsccnelapspkhckteanfshiqlppataaddnsndnwsncywmdskiqpnpysnplfsefdcsfpgltqpsafaatavndmstsiafnrTGFQVVEKSWPLGA
Flexible Loop (DISEMBL)
MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFslrdrkyptglrtnratgagywkatgkdrevcsgssgallgmkktlvfykgraprgektkwvMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEAAATAGACLPALLDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDNHHHHLFPVNGLFETSAVTNKHILINNITENIGNNTSPSMLFKALLSHQDFSCCNELAPSPKHCKTEANFSHIQLppataaddnsnDNWSNCYWMDSKIQPNPYSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVVEKSWPLGA
Low Complexity Region (SEG)
MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEaaatagaclpallDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDNHHHHLFPVNGLFETSAVTNKHilinnitenignnTSPSMLFKALLSHQDFSCCNELAPSPKHCKTEANFSHIQLPPataaddnsndnWSNCYWMDSKIQPNPYSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVVEKSWPLGA
Disordered region (IsUnstruct)
*********************FRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEAAATAGACLPALLDAPGPATTTLLLECQS****************************VNGLFETSAVTNKHILINNITENIGNNTSPSMLFKALLSHQDFSCCNELA*****************************NWSNCYWMDSKIQPNPYSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVVE*******
Disordered Region (DISOPRED)
******************PPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEY***************WVICRIFN*************************************************************************************************************************************************************DNWSNCYWMD************FSEFDCSFPGL*Q***************************KSWP***
Disordered Region (DISEMBL)
*********GDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEAAATAGACLPALLDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDNHHHHLFPVNGLFETSAVTNKHILINNITENIGNNTSPSMLFKALLSHQDFSCCNELAPSPKHCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSKIQPNPYSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVVEKSWPLGA
Disordered Region (DISPRO)
****************GLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAV********************************************************************NHHHHLFPVNGLFETSAVTNKHILINNITENIGNNTSPSMLFKALLSHQDFSCCNELA***************************NDNWSNCYWMDSKIQPNPYSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVVEKSWPLG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEAAATAGACLPALLDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDNHHHHLFPVNGLFETSAVTNKHILINNITENIGNNTSPSMLFKALLSHQDFSCCNELAPSPKHCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSKIQPNPYSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVVEKSWPLGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q9S851	334	Protein CUP-SHAPED COTYLE	yes	no	0.556	0.652	0.665	2e-83
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.403	0.421	0.720	1e-65
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.482	0.609	0.593	9e-64
Q9FLJ2	336	NAC domain-containing pro	no	no	0.635	0.741	0.482	7e-62
Q5CD17	396	NAC domain-containing pro	no	no	0.382	0.378	0.579	4e-54
Q84TE6	324	NAC domain-containing pro	no	no	0.456	0.552	0.507	3e-48
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.380	0.436	0.580	6e-47
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.375	0.481	0.571	1e-46
Q52QH4	318	NAC domain-containing pro	no	no	0.400	0.493	0.561	3e-46
Q84K00	567	NAC domain-containing pro	no	no	0.380	0.262	0.571	6e-46

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score =  310 bits (793), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/230 (66%), Positives = 180/230 (78%), Gaps = 12/230 (5%)

Query: 1   MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 60
           +EDVLSEL G+E NE+GLPPGFRFHPTDEELITFYLASK+F+G   G+ I+EVDLNRCEP
Sbjct: 5   VEDVLSELAGEERNERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEP 64

Query: 61  WELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMK 120
           WELP++AKMGE+EWYF+SLRDRKYPTGLRTNRAT AGYWKATGKD+EV SG  G L+GMK
Sbjct: 65  WELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMK 124

Query: 121 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLL 180
           KTLVFYKGRAPRG KTKWVMHEYRL+ D S+RHTCKEEWVICR+FNK   +G++KN  L+
Sbjct: 125 KTLVFYKGRAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNK---TGDRKNVGLI 181

Query: 181 QGQ-HYLFEAAATAGA-----CLPALLDAPGPATT---TLLLECQSQNHN 221
             Q  YL   + +         LP L++      T   +LL +   QN+N
Sbjct: 182 HNQISYLHNHSLSTTHHHHHEALPLLIEPSNKTLTNFPSLLYDDPHQNYN 231

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.
Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  250 bits (639), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/161 (72%), Positives = 131/161 (81%), Gaps = 3/161 (1%)

Query: 14  NEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKE 73
           + Q LPPGFRFHPTDEELIT YL  KV +G F    IAEVDLN+CEPW+LP  AKMGEKE
Sbjct: 13  DSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKE 72

Query: 74  WYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRG 133
           WYFFSLRDRKYPTGLRTNRAT AGYWKATGKDRE+ S  + AL+GMKKTLVFYKGRAP+G
Sbjct: 73  WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKG 132

Query: 134 EKTKWVMHEYRLDGDFSYR---HTCKEEWVICRIFNKAVVS 171
           EK+ WVMHEYRL+G FSY     + K+EWVI R+F K  ++
Sbjct: 133 EKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLA 173

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score =  244 bits (623), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 3/192 (1%)

Query: 14  NEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKE 73
           +E  +PPGFRFHPTDEELIT+YL  KV +  F    I++VDLN+ EPWELP+ AKMGEKE
Sbjct: 16  DESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKE 75

Query: 74  WYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRG 133
           WYFF+LRDRKYPTGLRTNRAT AGYWKATGKDRE+ S  + +LLGMKKTLVFYKGRAP+G
Sbjct: 76  WYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKG 135

Query: 134 EKTKWVMHEYRLDGDFSYRH---TCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEAA 190
           EK+ WVMHEYRLDG FSY +   + K+EWV+C++  K+ V   + N +       +    
Sbjct: 136 EKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSGVVSRETNLISSSSSSAVTGEF 195

Query: 191 ATAGACLPALLD 202
           ++AG+ +  +++
Sbjct: 196 SSAGSAIAPIIN 207

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  238 bits (606), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 171/278 (61%), Gaps = 29/278 (10%)

Query: 12  EVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGE 71
           E  +  LPPGFRFHPTDEELIT YL  KV + +F    I EVDLN+ EPWELP +AKMGE
Sbjct: 10  EEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGE 69

Query: 72  KEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAP 131
           KEWYFF +RDRKYPTGLRTNRAT AGYWKATGKD+E+  G S  L+GMKKTLVFY+GRAP
Sbjct: 70  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKS--LVGMKKTLVFYRGRAP 127

Query: 132 RGEKTKWVMHEYRLDGDFSYRH---TCKEEWVICRIFNKAVVSGEKK---NGLLLQGQHY 185
           +G+KT WVMHEYRL+G FS  +   T K EWVICR+F K+  +G KK   + L+  G   
Sbjct: 128 KGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKS--AGGKKIPISSLIRIGSL- 184

Query: 186 LFEAAATAGACLPALLDAP----GPATTTLLLECQS----QNHNPILENLPNHFVNQQQD 237
                    + LP+L D+        T  + + C S    QN    L    +  +N  Q 
Sbjct: 185 ---GTDFNPSLLPSLTDSSPYNDKTKTEPVYVPCFSNQTDQNQGTTLNCFSSPVLNSIQA 241

Query: 238 NHHHHL-------FPVNGLFETSAVTNKHILINNITEN 268
           +  H +         V+   ++  +T +H +++ + EN
Sbjct: 242 DIFHRIPLYQTQSLQVSMNLQSPVLTQEHSVLHAMIEN 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  212 bits (540), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/169 (57%), Positives = 116/169 (68%), Gaps = 19/169 (11%)

Query: 18  LPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFF 77
           LPPGFRFHPTD E+I  YL  K+ N +F  + I EVDLN+CEPW+LP  AKMGEKEWYFF
Sbjct: 19  LPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMGEKEWYFF 78

Query: 78  SLRDRKYPTGLRTNRATGAGYWKATGKDREV--------------CSGSSGALLGMKKTL 123
           S +D KYPTG+RTNRAT  GYWKATGKDRE+               S     L+GMKKTL
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTL 138

Query: 124 VFYKGRAPRGEKTKWVMHEYRLDGDFSYRH-----TCKEEWVICRIFNK 167
           VFY GRAP+G KT WVMHE+RL  +    H       K+EWV+C++F+K
Sbjct: 139 VFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFHK 187

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 126/193 (65%), Gaps = 14/193 (7%)

Query: 15  EQGLPPGFRFHPTDEELITFYLASK-VFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKE 73
           E  LPPGFRFHP D+EL+  YL  + + N     + + +VDLN+CEPW++P +A +G K+
Sbjct: 16  EAKLPPGFRFHPKDDELVCDYLMRRSLHNNHRPPLVLIQVDLNKCEPWDIPKMACVGGKD 75

Query: 74  WYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRG 133
           WYF+S RDRKY TGLRTNRAT  GYWKATGKDR +     G L+GM+KTLVFY+GRAPRG
Sbjct: 76  WYFYSQRDRKYATGLRTNRATATGYWKATGKDRTIL--RKGKLVGMRKTLVFYQGRAPRG 133

Query: 134 EKTKWVMHEYRLDGDF----SYRHTCKEEWVICRIFNKAVVSGEKKNGLLLQGQHYLFEA 189
            KT WVMHE+RL G          + KE+WV+CR+F+K       +  +        F+ 
Sbjct: 134 RKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNT-----EGVICRDNMGSCFD- 187

Query: 190 AATAGACLPALLD 202
             TA A LP L+D
Sbjct: 188 -ETASASLPPLMD 199

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  188 bits (478), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 113/155 (72%), Gaps = 6/155 (3%)

Query: 17  GLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG---EKE 73
           G+PPGFRFHPTDEEL+ +YL  K+    F    I EVDLN+ EPW+L +  K+G   + E
Sbjct: 8   GVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNE 67

Query: 74  WYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRG 133
           WYFFS +DRKYPTG RTNRAT AG+WKATG+D+  C  +S   +GM+KTLVFYKGRAP G
Sbjct: 68  WYFFSHKDRKYPTGSRTNRATHAGFWKATGRDK--CIRNSYKKIGMRKTLVFYKGRAPHG 125

Query: 134 EKTKWVMHEYRL-DGDFSYRHTCKEEWVICRIFNK 167
           +KT W+MHEYRL D D    +  ++ WV+CR+F K
Sbjct: 126 QKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMK 160

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 113/154 (73%), Gaps = 7/154 (4%)

Query: 17  GLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG---EKE 73
           G+PPGFRFHPTDEEL+ +YL  K+    F    I EVDLN+ EPW+L D  K+G   + E
Sbjct: 7   GVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIGSTPQNE 66

Query: 74  WYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRG 133
           WYFFS +DRKYPTG RTNRAT +G+WKATG+D+  C  +S   +GM+KTLVFYKGRAP G
Sbjct: 67  WYFFSHKDRKYPTGSRTNRATHSGFWKATGRDK--CIRNSYKKIGMRKTLVFYKGRAPHG 124

Query: 134 EKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNK 167
           +KT W+MHEYR++   +    C++ WV+CR+F K
Sbjct: 125 QKTDWIMHEYRIED--TEDDPCEDGWVVCRVFKK 156

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 109/162 (67%), Gaps = 5/162 (3%)

Query: 11  DEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG 70
           D   E  LPPGFRFHPTDEEL+  YL  KV         IAEVDL + +PW+LP+ A  G
Sbjct: 14  DAEAELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFG 73

Query: 71  EKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRA 130
            KEWYFF+ RDRKYP G R NRA G GYWKATG D+ V    S   +G+KK LVFY G+A
Sbjct: 74  RKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKA 133

Query: 131 PRGEKTKWVMHEYRL-DGDFS---YRHTCK-EEWVICRIFNK 167
           PRG KT W+MHEYRL D D +    + + K +EWV+CR++NK
Sbjct: 134 PRGVKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNK 175

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score =  185 bits (469), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 111/154 (72%), Gaps = 5/154 (3%)

Query: 18  LPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEK--EWY 75
           L PGFRFHPTDEEL+ +YL  KV N  F    I+  D+ + EPW+LPD +K+  +  EWY
Sbjct: 9   LAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWY 68

Query: 76  FFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEK 135
           FFS+ D+KY  G +TNRAT  GYWK TGKDRE+ +GS   ++GMKKTLV++KGRAPRGE+
Sbjct: 69  FFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSR--VVGMKKTLVYHKGRAPRGER 126

Query: 136 TKWVMHEYRL-DGDFSYRHTCKEEWVICRIFNKA 168
           T WVMHEYRL D D       +E +V+CRIF K+
Sbjct: 127 TNWVMHEYRLSDEDLKKAGVPQEAYVLCRIFQKS 160

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
255539308	402	transcription factor, putative [Ricinus	0.936	0.912	0.613	1e-127
359491919	405	PREDICTED: protein CUP-SHAPED COTYLEDON	0.918	0.888	0.588	1e-119
224061845	403	NAC domain protein, IPR003441 [Populus t	0.941	0.915	0.572	1e-117
343098421	360	TPA_inf: CUP-SHAPED COTYLEDON 3 [Carica	0.841	0.916	0.597	1e-107
449485253	417	PREDICTED: uncharacterized protein LOC10	0.951	0.894	0.547	1e-104
219394439	363	CUP-SHAPED COTYLEDON3 [Aquilegia coerule	0.862	0.931	0.530	3e-94
297745593	320	unnamed protein product [Vitis vinifera]	0.466	0.571	0.882	5e-93
356517917	374	PREDICTED: protein CUP-SHAPED COTYLEDON	0.905	0.949	0.512	4e-87
219394448	352	CUP-SHAPED COTYLEDON3 [Solanum tuberosum	0.479	0.534	0.767	3e-85
329025158	348	cup-shaped cotlyedon 3 [Solanum chacoens	0.446	0.502	0.827	2e-84

>gi|255539308|ref|XP_002510719.1| transcription factor, putative [Ricinus communis] gi|223551420|gb|EEF52906.1| transcription factor, putative [Ricinus communis]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/424 (61%), Positives = 296/424 (69%), Gaps = 57/424 (13%)

Query: 1   MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 60
           ME++L EL G++ NEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP
Sbjct: 4   MEELLCELIGEDRNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 63

Query: 61  WELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMK 120
           WELPDVAKMGE+EWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV S SSGALLGMK
Sbjct: 64  WELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSASSGALLGMK 123

Query: 121 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLL 180
           KTLVFY+GRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNK   +GEKKN  LL
Sbjct: 124 KTLVFYRGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNK---TGEKKNA-LL 179

Query: 181 QGQHYLFEAAATAGAC-LPALLDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDNH 239
           QGQ +L EA +   +C LP+LL+AP     + L+ECQSQ      + L N F+ Q Q+N 
Sbjct: 180 QGQRFLLEATSPPNSCSLPSLLEAP-----STLMECQSQAGT---DGLQNPFLIQHQEND 231

Query: 240 H------------HHLFPVNGL-FETSAVTNKHILINNITE---NIGNNT--SPSMLFKA 281
                        H+   +NG+ F+ S      I I+  TE   NI  NT  +PSMLFK+
Sbjct: 232 LKSLLLSPLLSQCHNTVSINGIQFQPSFSPTTPIAISTNTETNKNIDTNTNNNPSMLFKS 291

Query: 282 LLSHQDFSCCNELAPSPKHCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSKI----- 336
           LLSHQD +   E +P  K CKTEANFSH QLP A            N  WM  KI     
Sbjct: 292 LLSHQDCT-LKEQSPVLKQCKTEANFSHFQLPEA------------NLNWMMDKIHHHHQ 338

Query: 337 QPNPYSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVV--------EKSW 388
             +PY  PL  E DC+  G+T  +  A    ++MSTSIAFNR GFQ++         +SW
Sbjct: 339 HQSPYQYPLSFEMDCNMLGITAAATDADITAHEMSTSIAFNRAGFQMMLDAPIRHPAESW 398

Query: 389 PLGA 392
           PL +
Sbjct: 399 PLDS 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491919|ref|XP_002273222.2| PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Vitis vinifera]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/430 (58%), Positives = 292/430 (67%), Gaps = 70/430 (16%)

Query: 1   MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 60
           ME+VL EL+ +++NEQGLPPGFRFHPTDEELITFYLASKVFNG+FCGVEIAEVDLNRCEP
Sbjct: 4   MEEVLCELSREDINEQGLPPGFRFHPTDEELITFYLASKVFNGSFCGVEIAEVDLNRCEP 63

Query: 61  WELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMK 120
           WELPDVAKMGE+EWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV S SSGALLGMK
Sbjct: 64  WELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVHSASSGALLGMK 123

Query: 121 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLL 180
           KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIF+K   +GEKKN  + 
Sbjct: 124 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFHK---TGEKKNP-MF 179

Query: 181 QGQHYLF---EAAATAGACLPALLDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQD 237
           QGQ YL     AAA A + LPALL+    + TTLL   +SQ+H  +   + + F+     
Sbjct: 180 QGQAYLLGSSAAAAVATSSLPALLE----SQTTLL---ESQSHPTMQGGISSSFL----- 227

Query: 238 NHHHH--------------------LFPVNGLFETSAVT-----NKHILINNITENIGNN 272
            HHHH                     FP+N  F++ + +     N     N  +    NN
Sbjct: 228 VHHHHDQESNELKALINPVLSQSPLAFPINSGFQSCSFSTTPTTNIPNTNNINSTTGNNN 287

Query: 273 TSPSMLFKALLSHQDFSCCNELAPSPKHCKTEANFSHIQLPPATAADDNSNDNWSNCYWM 332
            S S+LFK+LLSHQ+ S   E    PK CKTEANFSH QLP A            N +W+
Sbjct: 288 PSTSILFKSLLSHQECS-LKEQTTIPKQCKTEANFSHFQLPDA------------NMHWV 334

Query: 333 DSKIQPNPYSNPLFSEFD-CS--FPGLTQPSAFAATAVNDMSTSIAFNRTGFQVV----- 384
           D ++  N + NPLF E D CS    G T  +A     V++MSTSIAFNR GFQ++     
Sbjct: 335 D-RMNSNLHQNPLFFEMDYCSGGVLGFTAATATGGETVHEMSTSIAFNRAGFQMMVDFPI 393

Query: 385 ----EKSWPL 390
                +SWPL
Sbjct: 394 RVPGGESWPL 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061845|ref|XP_002300627.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222842353|gb|EEE79900.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/419 (57%), Positives = 289/419 (68%), Gaps = 50/419 (11%)

Query: 1   MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 60
           ME++L EL  +++NEQGLPPGFRFHPTDEELITFYLASKVFNG+FCGV+IAEVDLNRCEP
Sbjct: 4   MEELLCELTCEDINEQGLPPGFRFHPTDEELITFYLASKVFNGSFCGVDIAEVDLNRCEP 63

Query: 61  WELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMK 120
           WELPDVAKMGE+EWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV S S+GALLGMK
Sbjct: 64  WELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSASTGALLGMK 123

Query: 121 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLL 180
           KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRH+CKEEWVICRIF+K    GEKKN  L 
Sbjct: 124 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHSCKEEWVICRIFHK---KGEKKNVFLQ 180

Query: 181 QGQHY-LFEAAATAGA-CLPALLDAPGPATTTLLLECQSQNHNPILENLPNHF-VNQQQD 237
            GQ Y L EA++ A +  LP LL+    A+ ++  +CQS+  N ++E   N F +++ Q+
Sbjct: 181 AGQGYHLMEASSPANSGSLPPLLE----ASASIFDQCQSK--NTVVEAFQNAFLIHEHQE 234

Query: 238 NHHHHLF----------PVNGLFETSAVTNKHILINNITENIGNNT-----SPSMLFKAL 282
           N    L            +NG     + T+  I     + N   +T     SPSMLFK++
Sbjct: 235 NDLKSLLNPLVSQSNAMSINGFQPCFSPTSISINSTTTSTNKNTDTNTNNQSPSMLFKSI 294

Query: 283 LSHQDFSCCNELAPSPKHCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSKIQPNPY- 341
           LS+QD +   + +   K C TEANFSH QL          +D    C  +D  I PNPY 
Sbjct: 295 LSYQDCALKEQSSTLYKQCNTEANFSHFQL----------HDAHLGC--VDKIIHPNPYQ 342

Query: 342 SNPLFSEFDCS--FPGLTQPSAFAATAVNDMSTSIAFNRTGFQVV--------EKSWPL 390
           +NPLF E DCS    G ++ ++ A T  +DMSTSIAF+R G Q++         +SWP 
Sbjct: 343 NNPLFFEMDCSSNILGFSESASAADTIAHDMSTSIAFSRAGLQMMLDTPIRLPAESWPF 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343098421|tpg|DAA34940.1| TPA_inf: CUP-SHAPED COTYLEDON 3 [Carica papaya]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/378 (59%), Positives = 257/378 (67%), Gaps = 48/378 (12%)

Query: 1   MEDVLSELN-GDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCE 59
           +EDVL EL  G+EVNEQGLPPGFRFHPTDEELITFYLASKV N TF G+ IAE+DLNRCE
Sbjct: 4   VEDVLRELGVGEEVNEQGLPPGFRFHPTDEELITFYLASKVLNATFSGLHIAELDLNRCE 63

Query: 60  PWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGM 119
           PWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV S S+GALLGM
Sbjct: 64  PWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSASTGALLGM 123

Query: 120 KKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLL 179
           KKTLVFYKGRAPRGEKTKWVMHEYRLDGDFS+RHTCKEEWVICRIF+K   +GEKKN + 
Sbjct: 124 KKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSFRHTCKEEWVICRIFHK---TGEKKNSVA 180

Query: 180 LQGQHYLFEAAATAGACLPALLDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDNH 239
                 +   + ++ A  P LL+   P     LLE Q+   +P      N FV     NH
Sbjct: 181 AAAAASVLSPSRSSLA--PVLLENQTP-----LLESQTHQTSP-----GNPFVT----NH 224

Query: 240 HHHLFPVNGLFETSAVTNKHILINNITENIGNNTSPSMLFKALLSHQDFSCCNELAPSPK 299
           H     +N L   S     + LIN ++    NNT+ S+LFK+LLSHQ     + +    K
Sbjct: 225 HLKTL-INPLLSQS-----NALINQLSAAT-NNTNSSILFKSLLSHQQQQLPSTVT---K 274

Query: 300 HCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSKIQPNPYSNPLFSEFDCSFPGLTQP 359
            CKTEA FSH Q+ P  A  +          WMD KI  +  S+PLFS+ D S  G    
Sbjct: 275 QCKTEATFSHFQILPVDAKMN----------WMD-KIN-HISSSPLFSDMDSSMLGP--- 319

Query: 360 SAFAATAVNDMSTSIAFN 377
                 AV+D STSIAFN
Sbjct: 320 ---QGAAVDDTSTSIAFN 334

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485253|ref|XP_004157114.1| PREDICTED: uncharacterized protein LOC101224537 [Cucumis sativus]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/433 (54%), Positives = 278/433 (64%), Gaps = 60/433 (13%)

Query: 1   MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 60
           ME +LSELNG+E+NEQGLPPGFRFHPTDEELITFYLASKVF G+FCGVEIAEVDLNRCEP
Sbjct: 4   MEQILSELNGEELNEQGLPPGFRFHPTDEELITFYLASKVFKGSFCGVEIAEVDLNRCEP 63

Query: 61  WELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMK 120
           WELPDVAKMGE+EWYF+SLRDRKYPTGLRTNRATGAGYWKATGKDREV S S+G+LLGMK
Sbjct: 64  WELPDVAKMGEREWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSASNGSLLGMK 123

Query: 121 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLL 180
           KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRH CKEEWVICRIF+K   +GEKKN  + 
Sbjct: 124 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHACKEEWVICRIFHK---NGEKKNS-MF 179

Query: 181 QGQHYLFE---AAATAGACLPALLDAPGPATTTLLLECQSQNHNPI-LENLPNHFVNQQQ 236
           Q Q YL E   +++T    LP LL+   P TT  L+ECQSQ    + L+   N F  +Q 
Sbjct: 180 QCQTYLLESALSSSTTSNSLPPLLET-NPTTT--LVECQSQAAMQLQLQAFQNPFQIRQP 236

Query: 237 DNHHHHLF------PVNGLFETSAVTNKHILINNITENIGNNT-------SPSMLFKALL 283
             +    F        N L  +  +    I IN I  N  NN        SPS+LFK+LL
Sbjct: 237 PENDLKRFMSSVMSQSNLLSSSEQLHKSSISINPIITNAANNNNNMLYAPSPSILFKSLL 296

Query: 284 SHQDFSCCNELAPSP------KHCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSK-- 335
           SHQD +   +                 ++F+     PA  A+ NSN        MD K  
Sbjct: 297 SHQDSTVLLKQQQQQHQQQQFNKAADSSSFTTHNFDPA-EAEANSN-------LMDIKKM 348

Query: 336 IQPNP-----YSNPLFSEFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVV------ 384
           + PN      + +PLF E +C+ P    P   A  +++D STSI+FNR  +Q +      
Sbjct: 349 MVPNASPCSYHQHPLFFETECNSP----PPLPAHVSLHDTSTSISFNRPAYQTLLDPHIN 404

Query: 385 -----EKSWPLGA 392
                  SWPL A
Sbjct: 405 ILHAHGDSWPLDA 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219394439|gb|ACL14364.1| CUP-SHAPED COTYLEDON3 [Aquilegia coerulea]

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 210/396 (53%), Positives = 251/396 (63%), Gaps = 58/396 (14%)

Query: 1   MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 60
           ME+VL EL+G++ NEQGLPPGFRFHPTDEELITFYLASKVFNG FCGVEIAE+DLNRCEP
Sbjct: 6   MEEVLCELHGEDTNEQGLPPGFRFHPTDEELITFYLASKVFNGRFCGVEIAEIDLNRCEP 65

Query: 61  WELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMK 120
           WELPD+AKMGE+ WYFFS RDRKYPTGLRTNRAT AGYWKATGKD+EV S S  +LLGMK
Sbjct: 66  WELPDIAKMGERVWYFFSQRDRKYPTGLRTNRATEAGYWKATGKDKEVYSASDDSLLGMK 125

Query: 121 KTLVFYKGRAPRGEKTKWVMHEYRLDGDF-SYRHTCKEEWVICRIFNKAVVSGEKKNGLL 179
           KTLVFYKGRAPRG KTKWVMHEYRL+GDF S+ HT KEEWV+CRI  K   +GEKK+  L
Sbjct: 126 KTLVFYKGRAPRGVKTKWVMHEYRLEGDFSSFSHTFKEEWVLCRILQK---TGEKKSP-L 181

Query: 180 LQGQHYLFEAAATAGACLPALLDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDNH 239
               +   E  ++    LP +L+   P+TT            P L +L N F  +Q+ + 
Sbjct: 182 FHAHNCFQEVFSSPSNFLPPMLE---PSTTV--------TQTP-LHSLQNSFALKQESD- 228

Query: 240 HHHLFPVNGLFETSAVTNKH-ILINNITENIGNNTSP----------SMLFKALLSHQDF 288
                         A+ N + I +++   N  +  SP          S +FK  LS+QD 
Sbjct: 229 ------------LKAILNPYAIQLHDFHTNFQSTYSPTSIKDTSPLSSFMFKNSLSNQD- 275

Query: 289 SCCNELAPSPKHCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSKIQPNPYSNPLFSE 348
           S   E    PK  K E NF H Q   AT           NC  MD K+Q N + +PL  E
Sbjct: 276 SILKE-PTVPKQFKRETNFPHFQPFDATF----------NC--MD-KVQQNLWQDPLSFE 321

Query: 349 FDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVV 384
            DCS   +   SA     V++MSTS+AFNRT FQ++
Sbjct: 322 MDCS--SVLGFSADDVDTVHEMSTSVAFNRTRFQMM 355

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745593|emb|CBI40758.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 165/187 (88%), Positives = 175/187 (93%), Gaps = 4/187 (2%)

Query: 1   MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 60
           ME+VL EL+ +++NEQGLPPGFRFHPTDEELITFYLASKVFNG+FCGVEIAEVDLNRCEP
Sbjct: 4   MEEVLCELSREDINEQGLPPGFRFHPTDEELITFYLASKVFNGSFCGVEIAEVDLNRCEP 63

Query: 61  WELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMK 120
           WELPDVAKMGE+EWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV S SSGALLGMK
Sbjct: 64  WELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVHSASSGALLGMK 123

Query: 121 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLL 180
           KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIF+K   +GEKKN  + 
Sbjct: 124 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFHK---TGEKKNP-MF 179

Query: 181 QGQHYLF 187
           QGQ YL 
Sbjct: 180 QGQAYLL 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517917|ref|XP_003527632.1| PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Glycine max]

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 207/404 (51%), Positives = 242/404 (59%), Gaps = 49/404 (12%)

Query: 1   MEDVLSELNGDEV-NEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCE 59
           ME++L EL+  E  NEQGLPPGFRFHPTDEEL+TFYLASKVFNGTF  V+ AEVDLNRCE
Sbjct: 4   MEELLYELSDHERRNEQGLPPGFRFHPTDEELVTFYLASKVFNGTFSNVKFAEVDLNRCE 63

Query: 60  PWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGM 119
           PWELPDVAKMGE+EWY FSLRDRKYPTGLRTNRATGAGYWKATGKD+EV S SSG LLGM
Sbjct: 64  PWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASSGTLLGM 123

Query: 120 KKTLVFYKGRAPRGEKTKWVMHEYR--LDGDFSYRHT--CKEEWVICRIFNKAVVSGEKK 175
           KKTLVFYKGRAPRGEKTKWVMHEYR  LD  FS  HT   KEEWVICRIF+K   SGEK+
Sbjct: 124 KKTLVFYKGRAPRGEKTKWVMHEYRLVLDAHFSLPHTHPSKEEWVICRIFHK---SGEKR 180

Query: 176 NGLLLQGQHYLFEAAATAGACLPALLDAPG-----PATTTLLLECQSQN-HNPILENLPN 229
           +  +LQ   +   +++   + LP LL +P      P + +       ++  +P+L     
Sbjct: 181 SP-VLQVHGHSDASSSPRESALPPLLASPSCFTFDPESQSQSSSHSQRDFQSPVL----I 235

Query: 230 HFVNQQQDNHHHHLFPVNGLFETSAVTNKHILINNITENIGNNTSPSMLFKALLSHQDFS 289
           H  +Q   +H+  LFP+                  IT    + +S S LF   L      
Sbjct: 236 HHQDQNGHSHNPRLFPL-----------------EITNARNHPSSFSDLFFKPLQQNCTL 278

Query: 290 CCNELAPSPKHCKTEANFSHIQLPPATAADDNSNDNWSNCYWMDSKIQPNPYS--NPLFS 347
             NE    PK  KTE    + Q       DD++N  W N      K+  NP +  N    
Sbjct: 279 KTNEQTILPKVTKTEDATFYDQY--HQLLDDHNNMRWVN------KLNQNPSNLLNTFPF 330

Query: 348 EFDCSFPGLTQPSAFAATAVNDMSTSIAFNRTGFQVVEKSWPLG 391
           E D    GL   S  A   V D+STS  FNR G Q    SWPL 
Sbjct: 331 EVDA---GLMAFSGAANAQVKDISTSTPFNRVGLQQTLDSWPLA 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219394448|gb|ACL14367.1| CUP-SHAPED COTYLEDON3 [Solanum tuberosum]

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 155/202 (76%), Positives = 172/202 (85%), Gaps = 14/202 (6%)

Query: 1   MEDVLSELNGDEV-NEQGLPPGFRFHPTDEELITFYLASKVFNGTF-CGVEIAEVDLNRC 58
           ME++L ELN +E+ NEQGLPPGFRFHPTDEELITFYLASKVFN TF  G++I +VDLNRC
Sbjct: 4   MEEILCELNREEMMNEQGLPPGFRFHPTDEELITFYLASKVFNATFSAGIQIPQVDLNRC 63

Query: 59  EPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLG 118
           EPWELP+VAKMGE+EWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV S ++GALLG
Sbjct: 64  EPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSATNGALLG 123

Query: 119 MKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGL 178
           MKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYR++CKEEWVICRI +K    GEKKN  
Sbjct: 124 MKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRYSCKEEWVICRILHKV---GEKKNA- 179

Query: 179 LLQGQHYLFEAAATAGACLPAL 200
                  ++E A   G+  P L
Sbjct: 180 -------IYEGAG-GGSTYPTL 193

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|329025158|gb|AEB71562.1| cup-shaped cotlyedon 3 [Solanum chacoense]

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/180 (82%), Positives = 164/180 (91%), Gaps = 5/180 (2%)

Query: 1   MEDVLSELNGDEV-NEQGLPPGFRFHPTDEELITFYLASKVFNGTF-CGVEIAEVDLNRC 58
           ME++L ELN +E+ NEQGLPPGFRFHPTDEELITFYLASKVFN TF  G++I +VDLNRC
Sbjct: 4   MEEILCELNREEMMNEQGLPPGFRFHPTDEELITFYLASKVFNATFSAGIQIPQVDLNRC 63

Query: 59  EPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLG 118
           EPWELP+VAKMGE+EWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV S ++GALLG
Sbjct: 64  EPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSATNGALLG 123

Query: 119 MKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGL 178
           MKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYR++ KEEWVICRI +K    GEKKN +
Sbjct: 124 MKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRYSSKEEWVICRILHKV---GEKKNAI 180

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2011736	334	CUC3 "CUP SHAPED COTYLEDON3" [	0.466	0.547	0.770	2.3e-78
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.403	0.421	0.720	1.6e-61
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.408	0.516	0.695	3.1e-60
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.390	0.484	0.686	5.7e-59
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.408	0.476	0.682	1.2e-58
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.607	0.710	0.475	4e-58
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.395	0.493	0.681	6.6e-58
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.377	0.519	0.718	2.2e-57
TAIR|locus:2095958	338	NAC046 "NAC domain containing	0.413	0.479	0.646	2.8e-57
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.408	0.486	0.684	2.8e-57

TAIR|locus:2011736 CUC3 "CUP SHAPED COTYLEDON3" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 144/187 (77%), Positives = 164/187 (87%)

Query:     1 MEDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEP 60
             +EDVLSEL G+E NE+GLPPGFRFHPTDEELITFYLASK+F+G   G+ I+EVDLNRCEP
Sbjct:     5 VEDVLSELAGEERNERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEP 64

Query:    61 WELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMK 120
             WELP++AKMGE+EWYF+SLRDRKYPTGLRTNRAT AGYWKATGKD+EV SG  G L+GMK
Sbjct:    65 WELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMK 124

Query:   121 KTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVSGEKKNGLLL 180
             KTLVFYKGRAPRG KTKWVMHEYRL+ D S+RHTCKEEWVICR+FNK   +G++KN  L+
Sbjct:   125 KTLVFYKGRAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNK---TGDRKNVGLI 181

Query:   181 QGQ-HYL 186
               Q  YL
Sbjct:   182 HNQISYL 188

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010014 "meristem initiation" evidence=IGI;RCA;TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 116/161 (72%), Positives = 131/161 (81%)

Query:    14 NEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKE 73
             + Q LPPGFRFHPTDEELIT YL  KV +G F    IAEVDLN+CEPW+LP  AKMGEKE
Sbjct:    13 DSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKE 72

Query:    74 WYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRG 133
             WYFFSLRDRKYPTGLRTNRAT AGYWKATGKDRE+ S  + AL+GMKKTLVFYKGRAP+G
Sbjct:    73 WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKG 132

Query:   134 EKTKWVMHEYRLDGDFSYR---HTCKEEWVICRIFNKAVVS 171
             EK+ WVMHEYRL+G FSY     + K+EWVI R+F K  ++
Sbjct:   133 EKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLA 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 114/164 (69%), Positives = 135/164 (82%)

Query:    14 NEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKE 73
             +E  +PPGFRFHPTDEELIT+YL  KV +  F    I++VDLN+ EPWELP+ AKMGEKE
Sbjct:    16 DESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKE 75

Query:    74 WYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRG 133
             WYFF+LRDRKYPTGLRTNRAT AGYWKATGKDRE+ S  + +LLGMKKTLVFYKGRAP+G
Sbjct:    76 WYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKG 135

Query:   134 EKTKWVMHEYRLDGDFSYRH---TCKEEWVICRIFNKA-VVSGE 173
             EK+ WVMHEYRLDG FSY +   + K+EWV+C++  K+ VVS E
Sbjct:   136 EKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSGVVSRE 179

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 105/153 (68%), Positives = 127/153 (83%)

Query:    15 EQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEW 74
             E+ LPPGFRFHPTDEELI++YL +K+ +  F G  IA+VDLN+ EPWELP+ AKMG KEW
Sbjct:    13 EEALPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNKSEPWELPEKAKMGGKEW 72

Query:    75 YFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGE 134
             YFFSLRDRKYPTG+RTNRAT  GYWK TGKD+E+ + ++  L+GMKKTLVFY+GRAPRGE
Sbjct:    73 YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKTLVFYRGRAPRGE 132

Query:   135 KTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNK 167
             KT WVMHEYRL    SYR + ++EWV+CR+F K
Sbjct:   133 KTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKK 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 114/167 (68%), Positives = 131/167 (78%)

Query:    12 EVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGE 71
             E  +  LPPGFRFHPTDEELIT YL  KV + +F    I EVDLN+ EPWELP +AKMGE
Sbjct:    10 EEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGE 69

Query:    72 KEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAP 131
             KEWYFF +RDRKYPTGLRTNRAT AGYWKATGKD+E+  G S  L+GMKKTLVFY+GRAP
Sbjct:    70 KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKS--LVGMKKTLVFYRGRAP 127

Query:   132 RGEKTKWVMHEYRLDGDFSYRH---TCKEEWVICRIFNKAVVSGEKK 175
             +G+KT WVMHEYRL+G FS  +   T K EWVICR+F K+  +G KK
Sbjct:   128 KGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKS--AGGKK 172

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 117/246 (47%), Positives = 155/246 (63%)

Query:     2 EDVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPW 61
             E V+    G+E+ +  LPPGFRFHPTDEE+IT YL  KV N  F  V + E DLN+CEPW
Sbjct:     7 EGVVLNHGGEELVD--LPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEPW 64

Query:    62 ELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKK 121
             +LP  AKMGEKE+YFF  RDRKYPTG+RTNRAT +GYWKATGKD+E+  G  G L+GMKK
Sbjct:    65 DLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGK-GCLVGMKK 123

Query:   122 TLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRH---TCKEEWVICRIFNKAVVSGEKKNGL 178
             TLVFY+GRAP+GEKT WVMHEYRL+G +SY +   + ++EWV+CR+F+K   S   +   
Sbjct:   124 TLVFYRGRAPKGEKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVFHKNNPSTTTQPMT 183

Query:   179 LLQGQHYLFEXXXXXXXXXXXXXDAPGPATTTLLLECQSQNHNPILENLPNHFVNQQQDN 238
              +  + +                  P     + + + +  N  PI  N P + ++     
Sbjct:   184 RIPVEDFTRMDSLENIDHLLDFSSLPPLIDPSFMSQTEQPNFKPI--NPPTYDISSPIQP 241

Query:   239 HHHHLF 244
             HH + +
Sbjct:   242 HHFNSY 247

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 107/157 (68%), Positives = 124/157 (78%)

Query:    15 EQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEW 74
             E+ LPPGFRFHPTDEELIT YL  KV +  F G  + +VDLN+CEPW+LP  A MGEKEW
Sbjct:     2 EENLPPGFRFHPTDEELITHYLCRKVSDIGFTGKAVVDVDLNKCEPWDLPAKASMGEKEW 61

Query:    75 YFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGE 134
             YFFS RDRKYPTGLRTNRAT AGYWK TGKD+E+    SG L+GMKKTLVFYKGRAP+GE
Sbjct:    62 YFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR--SGVLVGMKKTLVFYKGRAPKGE 119

Query:   135 KTKWVMHEYRLDGDFSYRHTCKEEWVICRIFNKAVVS 171
             K+ WVMHEYRL+    +  T KEEWV+CR+F K+  +
Sbjct:   120 KSNWVMHEYRLESKQPFNPTNKEEWVVCRVFEKSTAA 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 110/153 (71%), Positives = 121/153 (79%)

Query:    18 LPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFF 77
             LPPGFRFHPTDEELIT YL  KVFN  F    I EVDLN+ EPW+LP  AKMGEKEWYFF
Sbjct:    20 LPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGEKEWYFF 79

Query:    78 SLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTK 137
              +RDRKYPTGLRTNRAT AGYWKATGKD+E+  G S  L+GMKKTLVFYKGRAP+G KT 
Sbjct:    80 CVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKS--LVGMKKTLVFYKGRAPKGVKTN 137

Query:   138 WVMHEYRLDGDFSYRH---TCKEEWVICRIFNK 167
             WVMHEYRL+G +   +   T K EWVICR+F K
Sbjct:   138 WVMHEYRLEGKYCIENLPQTAKNEWVICRVFQK 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2095958 NAC046 "NAC domain containing protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 108/167 (64%), Positives = 129/167 (77%)

Query:     4 VLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWEL 63
             V+    GD+     LPPGFRFHPTDEE+IT YL  KVFN  F    I + DLN+ EPW+L
Sbjct:     7 VVVNQGGDQ-EVVDLPPGFRFHPTDEEIITHYLKEKVFNIRFTAAAIGQADLNKNEPWDL 65

Query:    64 PDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTL 123
             P +AKMGEKE+YFF  RDRKYPTG+RTNRAT +GYWKATGKD+E+  G  G L+GMKKTL
Sbjct:    66 PKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGK-GCLVGMKKTL 124

Query:   124 VFYKGRAPRGEKTKWVMHEYRLDGDFSYRH---TCKEEWVICRIFNK 167
             VFY GRAP+GEKT WVMHEYRLDG +SY +   T ++EWV+CR+F+K
Sbjct:   125 VFYTGRAPKGEKTNWVMHEYRLDGKYSYHNLPKTARDEWVVCRVFHK 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 115/168 (68%), Positives = 130/168 (77%)

Query:    12 EVNEQ-GLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG 70
             E +EQ  LPPGFRFHPTDEELIT YL  KV +  F    I EVDLN+ EPWELP  AK+G
Sbjct:    10 EDDEQMDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAKIG 69

Query:    71 EKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRA 130
             EKEWYFF +RDRKYPTGLRTNRAT AGYWKATGKD+E+  G S  L+GMKKTLVFY+GRA
Sbjct:    70 EKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGKS--LVGMKKTLVFYRGRA 127

Query:   131 PRGEKTKWVMHEYRLDGDFSYRH---TCKEEWVICRIFNKAVVSGEKK 175
             P+G+KT WVMHEYRLDG  S  +   T K EWVICR+F+K   +G KK
Sbjct:   128 PKGQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVICRVFHKT--AGGKK 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002924001 SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (422 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	3e-79

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  239 bits (612), Expect = 3e-79
 Identities = 89/131 (67%), Positives = 104/131 (79%), Gaps = 3/131 (2%)

Query: 18  LPPGFRFHPTDEELITFYLASKVFNGTFCGVE-IAEVDLNRCEPWELPD-VAKMGEKEWY 75
           LPPGFRFHPTDEEL+ +YL  KV       ++ I EVD+ + EPW+LPD  AK G++EWY
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 76  FFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEK 135
           FFS RDRKYP G RTNRATG+GYWKATGKD+ V S   G ++GMKKTLVFYKGRAP+GEK
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLS-KGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 136 TKWVMHEYRLD 146
           T WVMHEYRL+
Sbjct: 120 TDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.5e-43  Score=304.76  Aligned_cols=128  Identities=55%  Similarity=1.078  Sum_probs=97.7

Q ss_pred             CCCCceeCCChHHHHHHHHhhcccCCCCCC-CceeeccCCCCCCCCCCccccCCceeEEEEecCCccCCCCCcceeccCC
Q 016283           18 LPPGFRFHPTDEELITFYLASKVFNGTFCG-VEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGA   96 (392)
Q Consensus        18 LPPGFRF~PTDEELI~~YL~~KI~g~plp~-~~I~evDVY~~ePWdLP~~ak~GekeWYFFS~R~rKy~tG~RtnRatgg   96 (392)
                      |||||||+|||+|||.+||++|+.+.+++. .+|.++|||++|||+||...+.++++||||+++++++.+|.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999875 7899999999999999965455778999999999999999999999999


Q ss_pred             ceeEeecCCceEEeCCCCceeeeeEEEEEeecCCCCCCCcCeEEEEEEeC
Q 016283           97 GYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLD  146 (392)
Q Consensus        97 GyWKatGkdK~I~~~~~G~lVG~KKtLvFY~GrapkG~KTgWVMhEYrL~  146 (392)
                      |+||++|+.++|... +|.+||+||+|+||.++.+++.+|+|+||||+|+
T Consensus        81 G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999986 6899999999999999889999999999999985

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		3e-43
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		3e-43
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		6e-42

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Query: 11  DEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG 70
           D + +  LPPGFRF+PTDEEL+  YL  K     F    IAE+DL + +PW LP+ A  G
Sbjct: 13  DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG 72
Query: 71  EKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRA 130
           EKEWYFFS RDRKYP G R NR  G+GYWKATG D+ +   + G  +G+KK LVFY G+A
Sbjct: 73  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS--TEGQRVGIKKALVFYIGKA 130
Query: 131 PRGEKTKWVMHEYRLDGDFSYRHTCK-EEWVICRIFNK 167
           P+G KT W+MHEYRL        + K ++WV+CRI+ K
Sbjct: 131 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 168

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Query: 11  DEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG 70
           D + +  LPPGFRF+PTDEEL+  YL  K     F    IAE+DL + +PW LP+ A  G
Sbjct: 10  DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG 69
Query: 71  EKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRA 130
           EKEWYFFS RDRKYP G R NR  G+GYWKATG D+ +   + G  +G+KK LVFY G+A
Sbjct: 70  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS--TEGQRVGIKKALVFYIGKA 127
Query: 131 PRGEKTKWVMHEYRLDGDFSYRHTCK-EEWVICRIFNK 167
           P+G KT W+MHEYRL        + K ++WV+CRI+ K
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  168 bits (425), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 103/163 (63%), Gaps = 8/163 (4%)
Query: 11  DEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG 70
           D   E  LPPGFRFHPTD+EL+  YL  K          IAEVDL + +PW+LP+ A  G
Sbjct: 8   DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG 67
Query: 71  EKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRA 130
            +EWYFF+ RDRKYP G R NRA G GYWKATG D+ V     G  LG+KK LVFY G+A
Sbjct: 68  AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA--PRGRTLGIKKALVFYAGKA 125
Query: 131 PRGEKTKWVMHEYRLDGDFSYRHTCK------EEWVICRIFNK 167
           PRG KT W+MHEYRL          K      ++WV+CR++NK
Sbjct: 126 PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
1ut7_A	171	No apical meristem protein; transcription regulati	1e-100
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-99

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  294 bits (754), Expect = e-100
 Identities = 86/173 (49%), Positives = 110/173 (63%), Gaps = 4/173 (2%)

Query: 3   DVLSELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWE 62
             +     D + +  LPPGFRF+PTDEEL+  YL  K     F    IAE+DL + +PW 
Sbjct: 2   SHMGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWV 61

Query: 63  LPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKT 122
           LP+ A  GEKEWYFFS RDRKYP G R NR  G+GYWKATG D+ + +   G  +G+KK 
Sbjct: 62  LPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKA 119

Query: 123 LVFYKGRAPRGEKTKWVMHEYRL-DGDFSYRHTCKEEWVICRIFNKAVVSGEK 174
           LVFY G+AP+G KT W+MHEYRL +       T  ++WV+CRI+ K   S +K
Sbjct: 120 LVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ-SSAQK 171

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  291 bits (748), Expect = 2e-99
 Identities = 88/174 (50%), Positives = 105/174 (60%), Gaps = 9/174 (5%)

Query: 7   ELNGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDV 66
               D   E  LPPGFRFHPTD+EL+  YL  K          IAEVDL + +PW+LP+ 
Sbjct: 4   RRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPER 63

Query: 67  AKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFY 126
           A  G +EWYFF+ RDRKYP G R NRA G GYWKATG D+ V     G  LG+KK LVFY
Sbjct: 64  ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFY 121

Query: 127 KGRAPRGEKTKWVMHEYRLDGDFSYRHTCK------EEWVICRIFNKAVVSGEK 174
            G+APRG KT W+MHEYRL          K      ++WV+CR++NK     EK
Sbjct: 122 AGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK-NEWEK 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.7e-56  Score=407.27  Aligned_cols=153  Identities=55%  Similarity=1.043  Sum_probs=135.4

Q ss_pred             cCCCCCCCCceeCCChHHHHHHHHhhcccCCCCCCCceeeccCCCCCCCCCCccccCCceeEEEEecCCccCCCCCccee
Q 016283           13 VNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNR   92 (392)
Q Consensus        13 ~~~~~LPPGFRF~PTDEELI~~YL~~KI~g~plp~~~I~evDVY~~ePWdLP~~ak~GekeWYFFS~R~rKy~tG~RtnR   92 (392)
                      ..++.|||||||||||||||.+||++|+.+.+++..+|.++|||++|||+||+.+..|+++||||++|++||++|.|++|
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence            45679999999999999999999999999999998899999999999999999988899999999999999999999999


Q ss_pred             ccCCceeEeecCCceEEeCCCCceeeeeEEEEEeecCCCCCCCcCeEEEEEEeCCCCCcC------CCCCCceEEEEEEE
Q 016283           93 ATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYR------HTCKEEWVICRIFN  166 (392)
Q Consensus        93 atggGyWKatGkdK~I~~~~~G~lVG~KKtLvFY~GrapkG~KTgWVMhEYrL~~~~~~~------~~~~~e~VLCRIf~  166 (392)
                      +|++||||++|++++|...  |.+||+||+|+||.|++|+|.||+|+||||+|.......      ....++|||||||+
T Consensus        90 ~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             EETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             ecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            9999999999999999863  789999999999999999999999999999998764311      12468999999999


Q ss_pred             c
Q 016283          167 K  167 (392)
Q Consensus       167 K  167 (392)
                      |
T Consensus       168 K  168 (174)
T 3ulx_A          168 K  168 (174)
T ss_dssp             S
T ss_pred             c
Confidence            8

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=5.1e-56  Score=402.88  Aligned_cols=155  Identities=54%  Similarity=1.008  Sum_probs=133.3

Q ss_pred             ccCCCCCCCCceeCCChHHHHHHHHhhcccCCCCCCCceeeccCCCCCCCCCCccccCCceeEEEEecCCccCCCCCcce
Q 016283           12 EVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTN   91 (392)
Q Consensus        12 ~~~~~~LPPGFRF~PTDEELI~~YL~~KI~g~plp~~~I~evDVY~~ePWdLP~~ak~GekeWYFFS~R~rKy~tG~Rtn   91 (392)
                      ...+..|||||||+|||||||.+||++|+.+.+++..+|.++|||++|||+||+.++.|+++||||++|++||++|.|++
T Consensus        11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~   90 (171)
T 1ut7_A           11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN   90 (171)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred             cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccc
Confidence            35678999999999999999999999999999999889999999999999999998889999999999999999999999


Q ss_pred             eccCCceeEeecCCceEEeCCCCceeeeeEEEEEeecCCCCCCCcCeEEEEEEeCCCCCcC-CCCCCceEEEEEEEcC
Q 016283           92 RATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYR-HTCKEEWVICRIFNKA  168 (392)
Q Consensus        92 RatggGyWKatGkdK~I~~~~~G~lVG~KKtLvFY~GrapkG~KTgWVMhEYrL~~~~~~~-~~~~~e~VLCRIf~K~  168 (392)
                      |+|++||||++|+++.|...  |.+||+||+|+||.|++|+|.||+|+||||+|....... ....++|||||||+|+
T Consensus        91 R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~  166 (171)
T 1ut7_A           91 RVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (171)
T ss_dssp             EEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             ccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcC
Confidence            99999999999999999974  689999999999999999999999999999999764211 2356899999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-71

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  219 bits (558), Expect = 2e-71
 Identities = 84/160 (52%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 9   NGDEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAK 68
             D + +  LPPGFRF+PTDEEL+  YL  K     F    IAE+DL + +PW LP+ A 
Sbjct: 8   ETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL 67

Query: 69  MGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKG 128
            GEKEWYFFS RDRKYP G R NR  G+GYWKATG D+ + +   G  +G+KK LVFY G
Sbjct: 68  FGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIG 125

Query: 129 RAPRGEKTKWVMHEYRLDGDFSYRHTCK-EEWVICRIFNK 167
           +AP+G KT W+MHEYRL        + K ++WV+CRI+ K
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.2e-53  Score=375.56  Aligned_cols=155  Identities=54%  Similarity=1.018  Sum_probs=132.1

Q ss_pred             CccCCCCCCCCceeCCChHHHHHHHHhhcccCCCCCCCceeeccCCCCCCCCCCccccCCceeEEEEecCCccCCCCCcc
Q 016283           11 DEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRT   90 (392)
Q Consensus        11 ~~~~~~~LPPGFRF~PTDEELI~~YL~~KI~g~plp~~~I~evDVY~~ePWdLP~~ak~GekeWYFFS~R~rKy~tG~Rt   90 (392)
                      +.+.++.|||||||+|||||||.+||++|+.+.+++..+|.++|||++|||+||+....++++||||+++.+++++|.|.
T Consensus        10 ~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~   89 (166)
T d1ut7a_          10 DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRP   89 (166)
T ss_dssp             --CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------C
T ss_pred             CccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCcc
Confidence            34678899999999999999999999999999999988999999999999999998888899999999999999999999


Q ss_pred             eeccCCceeEeecCCceEEeCCCCceeeeeEEEEEeecCCCCCCCcCeEEEEEEeCCCCCc-CCCCCCceEEEEEEEc
Q 016283           91 NRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSY-RHTCKEEWVICRIFNK  167 (392)
Q Consensus        91 nRatggGyWKatGkdK~I~~~~~G~lVG~KKtLvFY~GrapkG~KTgWVMhEYrL~~~~~~-~~~~~~e~VLCRIf~K  167 (392)
                      +|++++||||++|+++.|..  +|.+||+||+|+||+++++++.+|+|+||||+|.+.... .....++|||||||+|
T Consensus        90 ~R~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~K  165 (166)
T d1ut7a_          90 NRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK  165 (166)
T ss_dssp             CEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEEC
T ss_pred             ccccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEec
Confidence            99999999999999998875  478999999999999999999999999999999875432 2345689999999998