Citrus Sinensis ID: 016291

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MARFSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYLSSLVSVRAGNKLDLGNHSLT
ccccccccHHHHHHHHHcccHHHHHHHHcccccHHHHHccHHHHHHHHccccccccEEEEEEEEcccccccccEEEEcccccccccccccccccEEcEEcccccccccccEEEEEEEcEEEEEEEcccccEEEEcccccEEEcccccccccccccccEEccEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEcccccEEEEEEEcccccEEEccccccEEEccEEEEEEEccccccccEEEEEEccccEEEEEcccccccccccccEEEEEEccEEEEEEEcccccccEEEEEEEccccccccEEEEEEEcccccccccEEEEEccEEEEEEcccEEEEEEccccEEEEEEEEcccccEEEEEEEEccccccccccccccccccc
ccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEcccccEEEEccccccEEEccccccccccccccEEEEEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEEEcccccEEEEcccccccccEccccccEEEEcEEEEEEEEccccccEEEEEEEcccccccccccccccccccccEEEEEEEccEEEEEEEcccccccEEEEEEEEccccccccEEEEEEccccccccEEEEEEccEEEEEEcccEEEEEEccccEEEEEEcccccccccEEEEEccEEEEcccccccccccccc
marfsdlpEELVVEILAYLPADSLMRFKCVQKSwysliakpKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSfdkntemlhsedhvyavdevihfpfykdrllypffghchgiVCISLRYVKVILCNSatrefrelpvscfhpspgseevvclplgfgfgydpktndykVVRILYFidnpgcespikVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFhwmawgdfhesdsfilsfdisdetfkkiagpsstlnarkdSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIegnsrlqkplvfwksdelvmedktgkfcrynlrtgeikdlpvrrRLRKYSAVNYLSSLVSVragnkldlgnhslt
marfsdlpeeLVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKiagpsstlnarkdsRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLtiegnsrlqkplvfwksdelvmedktgkfcrynlrtgeikdlpvrrrlRKYSAVNYLsslvsvragnkldlgnhslt
MARFSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHEsdsfilsfdisdETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYLSSLVSVRAGNKLDLGNHSLT
*********ELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIA************RELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYLSSLVSVRA************
****SDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYLSSLVSVRA************
MARFSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYLSSLVSVRAGNKLDLGNHSLT
****SDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYLSSLVSVRA************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MARFSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYLSSLVSVRAGNKLDLGNHSLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.892 0.819 0.274 3e-23
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.910 0.864 0.254 1e-21
Q9LIR8364 F-box/kelch-repeat protei no no 0.877 0.945 0.284 2e-18
Q9SFC7417 F-box protein At3g07870 O no no 0.818 0.769 0.257 1e-16
Q9LUP5388 F-box/kelch-repeat protei no no 0.696 0.703 0.262 5e-16
Q9LU24360 Putative F-box protein At no no 0.691 0.752 0.256 1e-15
Q9LX89445 F-box protein At5g10340 O no no 0.903 0.795 0.261 6e-15
Q9LUP8388 Putative F-box protein At no no 0.732 0.739 0.260 1e-13
Q9CAE7370 Putative F-box protein At no no 0.548 0.581 0.294 2e-13
Q9SI34376 Putative F-box only prote no no 0.709 0.739 0.253 6e-13
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 172/405 (42%), Gaps = 55/405 (13%)

Query: 7   LPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFN 66
           LP E++ EIL  LPA S+ RF+CV K + +L + P F    L   + N+S   L  +L  
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 67  DCGNEESILSFLSFDKNTEMLHSEDHVYAVDE-----------VIHFPFYKDRLLY---- 111
              N  S L F S       L + +H Y + +            +    Y DR +     
Sbjct: 96  SSHNLYS-LDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLN 154

Query: 112 ---------PFFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPL 162
                       G  +G+VCIS     V L N  T + + LP + F P     E      
Sbjct: 155 AKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPEN-FRPKSVEYERDNFQT 213

Query: 163 GFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV-NINLFAAGICFLQ 221
            +GFG+D  T+DYK+V+++        E  +   +Y+L  DSWR++ N+N       +  
Sbjct: 214 -YGFGFDGLTDDYKLVKLV-----ATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTS 267

Query: 222 RLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIV--L 279
               ++FN A HW+     H +   +++FDI  E F+++  P    +        +V  L
Sbjct: 268 ---GVHFNGAIHWVFTESRH-NQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSL 323

Query: 280 NESLAFV-----LHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDE 334
           N  L  V     +HD        +IW+M E G    W + + I    R  KPL   K+DE
Sbjct: 324 NGRLCVVNSCYDVHD--------DIWVMSEYGEAKSWSR-IRINLLYRSMKPLCSTKNDE 374

Query: 335 LVMEDKTGKFCRYNLRTGEIKDLPV--RRRLRKYSAVNYLSSLVS 377
            V+ +  G    YN  T    +L +   +    + A  Y+ SL+S
Sbjct: 375 EVLLELDGDLVLYNFETNASSNLGICGVKLSDGFEANTYVESLIS 419

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUP5|FBK59_ARATH F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=2 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUP8|FB153_ARATH Putative F-box protein At3g17490 OS=Arabidopsis thaliana GN=At3g17490 PE=4 SV=1 Back     alignment and function description
>sp|Q9CAE7|FB138_ARATH Putative F-box protein At3g10430 OS=Arabidopsis thaliana GN=At3g10430 PE=4 SV=1 Back     alignment and function description
>sp|Q9SI34|FBX9_ARATH Putative F-box only protein 9 OS=Arabidopsis thaliana GN=FBX9 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
449494779383 PREDICTED: F-box protein CPR30-like [Cuc 0.954 0.976 0.329 4e-55
449459528376 PREDICTED: F-box protein CPR30-like [Cuc 0.936 0.976 0.319 4e-51
345433625400 S-locus F-box brothers1-S1 [Pyrus pyrifo 0.915 0.897 0.346 2e-48
345433627400 S-locus F-box brothers1-S3 [Pyrus pyrifo 0.918 0.9 0.347 3e-48
169264899411 S locus F-box protein with the low allel 0.926 0.883 0.346 5e-48
301069176394 MdFBX19 [Malus x domestica] 0.915 0.911 0.365 6e-48
316996544394 hypothetical protein [Pyrus pyrifolia] 0.923 0.918 0.368 9e-48
29420805409 F-box [Prunus mume] 0.931 0.892 0.344 1e-47
301069170400 MdFBX16 [Malus x domestica] 0.915 0.897 0.350 3e-47
125995262394 MdSFBB3-alpha [Malus x domestica] 0.920 0.916 0.352 4e-47
>gi|449494779|ref|XP_004159645.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 211/391 (53%), Gaps = 17/391 (4%)

Query: 1   MARFSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLL 60
           MA   +LP+ ++++IL+ LP +SL+RFKCV+KSWY+L   PKF  K     + +K  +LL
Sbjct: 1   MASLPNLPDGVIIDILSRLPPESLLRFKCVRKSWYALFNDPKFKAKHFSTSLQHKH-ILL 59

Query: 61  KCRLFNDCGNEESILSFLSFDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGI 120
           K  +    GN+E+I S      +   +H    +  +D     PF++D   +   GH HG+
Sbjct: 60  KRLVTKHSGNKENIFSLFKLPLS---IHPSLSLSDID----LPFHEDFRFFEIRGHSHGL 112

Query: 121 VCISLRYVKVILCNSATREFRELPVSCF---HPSPGSEEVVCLPLGFGFGYDPKTNDYKV 177
           +C++     + LCN +TREF +LP S      P    ++        GFGYD K+ D+KV
Sbjct: 113 LCLTDLRKDIFLCNPSTREFHKLPPSILLLTEPPVEPDDYDSSTNAVGFGYDSKSRDFKV 172

Query: 178 VRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAW 237
           VR++ F++ PG   P +VE+Y LS D WR++   +   G  F      ++    ++W A 
Sbjct: 173 VRVVDFVEGPGYFYPPRVEVYDLSKDRWREIESPV--CGHVFWAPCFEMFHEGTYYWWAM 230

Query: 238 -GDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSL 296
            G+   +   I +FD+S+E F +I  P S        R L VL+  +    + +   +  
Sbjct: 231 TGNTEGNTEIIQTFDMSEEVFGRIPVPESFEGTGDRYRSLGVLDGCIVLFHYPSRGDERS 290

Query: 297 MEIWIM--DEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEI 354
            ++W M  DE G    W K+LTI     ++KPL+F   +EL+ME   G+   YN+++GE+
Sbjct: 291 FDMWEMAKDEWG-GVSWSKVLTIGPVCGIEKPLLFVSCEELLMEGNGGQVIVYNIKSGEV 349

Query: 355 KDLPVRRRLRKYSAVNYLSSLVSVRAGNKLD 385
           K++P++    K+    ++ SLVSV+ GNK++
Sbjct: 350 KEVPIKGDPAKFQGTAFVKSLVSVKGGNKIN 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449459528|ref|XP_004147498.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|345433625|dbj|BAK69446.1| S-locus F-box brothers1-S1 [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|345433627|dbj|BAK69447.1| S-locus F-box brothers1-S3 [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|169264899|dbj|BAG12293.1| S locus F-box protein with the low allelic sequence polymorphism 1-S2 [Prunus avium] Back     alignment and taxonomy information
>gi|301069176|dbj|BAJ11967.1| MdFBX19 [Malus x domestica] Back     alignment and taxonomy information
>gi|316996544|dbj|BAJ52234.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|29420805|dbj|BAC66624.1| F-box [Prunus mume] Back     alignment and taxonomy information
>gi|301069170|dbj|BAJ11964.1| MdFBX16 [Malus x domestica] Back     alignment and taxonomy information
>gi|125995262|dbj|BAF47179.1| MdSFBB3-alpha [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.676 0.641 0.260 2.1e-18
TAIR|locus:2142539445 AT5G10340 "AT5G10340" [Arabido 0.905 0.797 0.246 4.2e-14
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.627 0.675 0.283 3.2e-13
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.530 0.498 0.263 1.2e-11
TAIR|locus:2094947360 AT3G16210 "AT3G16210" [Arabido 0.397 0.433 0.245 1.5e-10
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.890 0.817 0.256 3.7e-10
TAIR|locus:2119787411 AT4G19940 "AT4G19940" [Arabido 0.762 0.727 0.228 5.7e-10
TAIR|locus:2045039376 AT2G04920 "AT2G04920" [Arabido 0.477 0.497 0.214 7.1e-10
TAIR|locus:2075790370 AT3G10430 "AT3G10430" [Arabido 0.112 0.118 0.511 9.1e-10
TAIR|locus:2041016420 AT2G43260 [Arabidopsis thalian 0.568 0.530 0.240 1.1e-09
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 211 (79.3 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 77/296 (26%), Positives = 136/296 (45%)

Query:   114 FGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTN 173
             FG  +G++ +S     + + N +TR+   LP S      GS     +   +G GYD  ++
Sbjct:    92 FGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYV--FYGLGYDSVSD 149

Query:   174 DYKVVRILYF-IDNP---GCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFN 229
             DYKVVR++ F ID+    GC  P +V++++L  +SW+++     +  + F      LY  
Sbjct:   150 DYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLY-R 208

Query:   230 RAFHWMAWGDFHE---------XXXXXXXXXXXXETFKKIAGPSSTLNARKDSR-ELIVL 279
             R +  +A    H                      E F+ +  P +  N   D + ++ VL
Sbjct:   209 RGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVL 268

Query:   280 NESLAFVL-HDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQ-----KPLVFWKSD 333
             +  L  +  +D    QS +++W+M E  V+  W K+ T++    ++     +PLV+ K  
Sbjct:   269 DGCLCLMCNYD----QSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDK 324

Query:   334 ELVM-EDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYLSSLVSVRAGNKLDLGN 388
             + V+ E    K   ++L + ++  L ++     YSA   +SSLV    G K DL N
Sbjct:   325 KKVLLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLV---LGCKGDLNN 377
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042177 "negative regulation of protein catabolic process" evidence=IMP
TAIR|locus:2142539 AT5G10340 "AT5G10340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045039 AT2G04920 "AT2G04920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00110934
hypothetical protein (381 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 1e-26
pfam0064648 pfam00646, F-box, F-box domain 3e-06
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 5e-06
pfam1293747 pfam12937, F-box-like, F-box-like 1e-05
pfam07734159 pfam07734, FBA_1, F-box associated 2e-04
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score =  105 bits (265), Expect = 1e-26
 Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 17/211 (8%)

Query: 114 FGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTN 173
              C G++C S    ++++ N +T + R LP                   F  GYDP   
Sbjct: 1   VVPCDGLICFSYG-KRLVVWNPSTGQSRWLP-----TPKSRRSNKESDTYF-LGYDPIEK 53

Query: 174 DYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFH 233
            YKV+       N       + ++YTL ++SWR +  +          +   +  N   +
Sbjct: 54  QYKVLCFSDRSGNRNQ---SEHQVYTLGSNSWRTIECS----PPHHPLKSRGVCINGVLY 106

Query: 234 WMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAV 293
           ++A+      D FI+SFD+S E FK+        +   D   LI     LA +       
Sbjct: 107 YLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT- 165

Query: 294 QSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQ 324
            +  ++W++++ G K +W KL T+       
Sbjct: 166 -NNFDLWVLNDAG-KQEWSKLFTVPIPPLPD 194

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|219544 pfam07734, FBA_1, F-box associated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.71
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.65
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.58
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.95
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.77
PHA02713557 hypothetical protein; Provisional 98.74
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.72
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.45
PHA03098534 kelch-like protein; Provisional 98.43
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.42
PHA02713557 hypothetical protein; Provisional 98.41
PLN02193470 nitrile-specifier protein 98.4
PLN02153341 epithiospecifier protein 98.4
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.33
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.31
PHA02790480 Kelch-like protein; Provisional 98.29
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.22
PHA03098534 kelch-like protein; Provisional 98.14
PLN02193470 nitrile-specifier protein 97.92
PLN02153341 epithiospecifier protein 97.88
PHA02790480 Kelch-like protein; Provisional 97.54
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.48
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.47
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.41
KOG4693392 consensus Uncharacterized conserved protein, conta 97.05
KOG1230 521 consensus Protein containing repeated kelch motifs 97.0
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 96.44
KOG0281499 consensus Beta-TrCP (transducin repeats containing 96.18
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.12
KOG2997366 consensus F-box protein FBX9 [General function pre 96.06
KOG4693392 consensus Uncharacterized conserved protein, conta 95.98
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 95.24
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 94.83
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 94.27
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 93.65
KOG1230 521 consensus Protein containing repeated kelch motifs 93.34
PF1396450 Kelch_6: Kelch motif 92.69
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 91.69
smart00284255 OLF Olfactomedin-like domains. 91.53
COG3055381 Uncharacterized protein conserved in bacteria [Fun 90.95
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 90.44
PF1396450 Kelch_6: Kelch motif 89.44
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 88.24
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 88.13
PRK11138 394 outer membrane biogenesis protein BamB; Provisiona 87.78
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 87.62
KOG0310 487 consensus Conserved WD40 repeat-containing protein 87.51
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 87.15
KOG4341483 consensus F-box protein containing LRR [General fu 86.2
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 85.79
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 85.55
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 84.1
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 83.35
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 82.82
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 82.65
TIGR03300 377 assembly_YfgL outer membrane assembly lipoprotein 82.45
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 80.38
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=4.5e-34  Score=255.25  Aligned_cols=221  Identities=25%  Similarity=0.402  Sum_probs=162.4

Q ss_pred             EeeccceEEEEEcCceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCc
Q 016291          114 FGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPI  193 (392)
Q Consensus       114 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~  193 (392)
                      ++|||||||+... ..++||||+||+++.||+++. +.  .....   ..++||||+.+++||||++......   ....
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~-~~--~~~~~---~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~   70 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKS-RR--SNKES---DTYFLGYDPIEKQYKVLCFSDRSGN---RNQS   70 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCC-cc--ccccc---ceEEEeecccCCcEEEEEEEeecCC---CCCc
Confidence            4799999998876 589999999999999997654 11  01011   3578999999999999999632211   1356


Q ss_pred             EEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcccccCCC
Q 016291          194 KVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSSTLNARKD  272 (392)
Q Consensus       194 ~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~  272 (392)
                      .++||++++++||.+....+..    .....+|++||++||++..........|++||+++|+|+ .+++|..... ...
T Consensus        71 ~~~Vys~~~~~Wr~~~~~~~~~----~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~-~~~  145 (230)
T TIGR01640        71 EHQVYTLGSNSWRTIECSPPHH----PLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD-SVD  145 (230)
T ss_pred             cEEEEEeCCCCccccccCCCCc----cccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccc-ccc
Confidence            8999999999999987322211    222349999999999997542122238999999999999 5999874321 112


Q ss_pred             CceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCC--CCc---ccceEEecCCeEEEEeCC--Ce-E
Q 016291          273 SRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGN--SRL---QKPLVFWKSDELVMEDKT--GK-F  344 (392)
Q Consensus       273 ~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~--~~~---~~p~~~~~~~~il~~~~~--~~-~  344 (392)
                      ...|++++|+||++....  ....++||+|++++. ..|+|+++|+..  ..+   ..|.++.++|+|++....  +. +
T Consensus       146 ~~~L~~~~G~L~~v~~~~--~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~  222 (230)
T TIGR01640       146 YLSLINYKGKLAVLKQKK--DTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYI  222 (230)
T ss_pred             ceEEEEECCEEEEEEecC--CCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEE
Confidence            247899999999997653  235699999998863 569999999842  112   247888888999997754  44 9


Q ss_pred             EEEECCCC
Q 016291          345 CRYNLRTG  352 (392)
Q Consensus       345 ~~ydl~t~  352 (392)
                      +.||++++
T Consensus       223 ~~y~~~~~  230 (230)
T TIGR01640       223 FYYNVGEN  230 (230)
T ss_pred             EEEeccCC
Confidence            99999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 6e-06
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-05
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 5e-05
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 8e-05
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 2e-04
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
 Score = 46.5 bits (109), Expect = 6e-06
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 4   FSDLPEELVVEILAYLPADSLMRF-KCVQKSWYSLIAKPKFVVKQLCNQIY 53
            ++LPE L++ +LA LPA  L++  + V   W  L+      + +   +  
Sbjct: 51  LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGL 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.15
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.09
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.95
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.9
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.89
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.88
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.86
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.85
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.82
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.82
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.8
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.79
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.79
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.76
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.67
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.61
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.6
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.54
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.32
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.26
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.0
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.57
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.49
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.32
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.01
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.92
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.39
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 89.63
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 89.51
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 87.82
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 87.01
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 86.94
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 85.55
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 84.99
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 84.11
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 84.07
3jro_A 753 Fusion protein of protein transport protein SEC13 83.79
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 83.14
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 81.5
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 81.33
2ad6_A 571 Methanol dehydrogenase subunit 1; PQQ configuratio 81.27
3jrp_A379 Fusion protein of protein transport protein SEC13 81.26
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 80.61
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 80.18
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
Probab=99.15  E-value=1.5e-11  Score=110.69  Aligned_cols=50  Identities=26%  Similarity=0.458  Sum_probs=47.2

Q ss_pred             CCCCCCcHHHHHHHHhcCCccccc-cccccchhhhhhhCChHHHHHHhhcc
Q 016291            2 ARFSDLPEELVVEILAYLPADSLM-RFKCVQKSWYSLIAKPKFVVKQLCNQ   51 (392)
Q Consensus         2 ~~~~~LP~Dll~~IL~rLP~~sl~-r~r~VCK~W~~li~~p~F~~~~~~~~   51 (392)
                      +.+..||+||+.+||+|||+++|+ ||++|||+|+++++++.|.+.|..+.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            458899999999999999999999 99999999999999999999988765
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 392
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 2e-08
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 6e-07
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 3e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 1e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 4  FSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKF 43
          +  LP+EL++ I + L    L++   V K WY L +    
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.27
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.69
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.48
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.3
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.23
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.13
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.01
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 96.89
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 87.28
d1flga_ 582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 80.35
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.9e-13  Score=80.77  Aligned_cols=40  Identities=30%  Similarity=0.625  Sum_probs=37.5

Q ss_pred             CCCCcHHHHHHHHhcCCccccccccccchhhhhhhCChHH
Q 016291            4 FSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKF   43 (392)
Q Consensus         4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VCK~W~~li~~p~F   43 (392)
                      ++.||+|++.+||++||+++++|+++|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            4689999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure