Citrus Sinensis ID: 016328

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MGRSFVGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHVKCS
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEHHHHHHHHHHHcccEEcccccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEEEEEEccccccEEEcccccccccccEEEEEccEEEEEcccccccccccEEEEEEcccccEEccccccccccEEEEEEEEEccEEEEEcccccccccccccEEEEEEcccccEEEcccccccccccEEEEEccEEEEEcccccccccccEEEEccEEEEcccccccEEEcccccccccccEEEEEccEEEEEcccccccccccccccccccccccEEEcEEEEEcccccEEEcccccccccccEEEEEEEccEEEEEcccccccccccEEEEEEEEEEcccccEEEEEccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccEEccccccccccHHEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccEEEEEccEEEEEEcccccccccccEEEEcccccccccccccccccccccEEEEEcccEEEEEEccccccccccccEEEEEccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEEEEccccccccccccccccccccccEEEEEEccEEEEEEccccccccccccccEEEccccEEEcccEEEEccccccEEccccccccccccEEEEEEccEEEEEEcccccccccEEEEEEEEEEEEEccEEEEccccEEEEEccccccc
Coil and Loop (DISEMBL)
mgrsfvgknsttpspaRVVLSIFVMILGFALVADFfwassskftssylniasnwspyhnsiilpnngpqkgenigvktkkdvvpkrilpatfqdlpapelkwekmkaapvprldgaAIQIKNLLYVFAGygsidyvhshvdiynftdntwggrfdmpremahshlgmvTDGRYIYVVtgqygpqcrgptahtfvldtetkkwqdlpplpvpryapatqlWRGRLhvmggsgenrytpevdhwslavkdgkplekewrteipiprggphracvvvddrllviggqegdfmakpgspifkcsrrnevvyddvymlddemkwkvlpsmpkpdshiEFAWVLVNNSIVIVggttekhpttkKMVLVGEIFQFNLNTLvsafypfnilchphvkcs
Flexible Loop (DISEMBL)
mgrsfvgknsttpsparVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILpatfqdlpapelKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTEtkkwqdlpplpvPRYAPATQLWRGRLHVMGGSGENrytpevdhwslavkdgkplekewrteipiprggphraCVVVDDRLLVIGGQEgdfmakpgspifkcsrrneVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHVKCS
Low Complexity Region (SEG)
MGRSFVGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHVKCS
Disordered region (IsUnstruct)
****************RVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN********IGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHV***
Disordered Region (DISOPRED)
****************RVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN************TKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHVKC*
Disordered Region (DISEMBL)
************PSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHVKCS
Disordered Region (DISPRO)
************PSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN*************KKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHVKCS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRSFVGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHVKCS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
Q9LK31	426	Kelch repeat-containing p	no	no	0.905	0.830	0.632	1e-131
Q6DFF6	604	Kelch-like protein 20 OS=	N/A	no	0.450	0.291	0.248	3e-08
Q5ZKD9	610	Kelch-like protein 20 OS=	yes	no	0.450	0.288	0.248	3e-08
B4J045	624	Kelch-like protein diablo	N/A	no	0.434	0.272	0.245	7e-08
B4L0G9	617	Kelch-like protein diablo	N/A	no	0.434	0.275	0.245	7e-08
B4LIG6	624	Kelch-like protein diablo	N/A	no	0.434	0.272	0.245	7e-08
D3Z8N4	609	Kelch-like protein 20 OS=	yes	no	0.450	0.288	0.243	8e-08
Q9Y2M5	609	Kelch-like protein 20 OS=	yes	no	0.450	0.288	0.243	8e-08
Q08DK3	609	Kelch-like protein 20 OS=	yes	no	0.450	0.288	0.243	8e-08
Q8VCK5	604	Kelch-like protein 20 OS=	yes	no	0.450	0.291	0.243	8e-08

>sp|Q9LK31|Y3272_ARATH Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/365 (63%), Positives = 278/365 (76%), Gaps = 11/365 (3%)

Query: 14  SPARVVLSI-FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSII----LPNNGP 68
           S  R++L + F  +LG   +A F   SSS    S   + S W P +   I    + +   
Sbjct: 14  SSRRLMLVLYFTSVLGIGFIAAFLCLSSS--IPSVSAVFSIWVPVNRPEIQIPIIDSKIV 71

Query: 69  QKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFA 128
           QK       TK  V   R L A F D+PAPELKWE+M++APVPRLDG ++QI NLLYVF+
Sbjct: 72  QKRSKQSNDTKDHV---RFLSAIFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFS 128

Query: 129 GYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP 188
           GYGS+DYVHSHVD++NFTDN W  RF  P+EMA+SHLG+VTDGRY+YVV+GQ GPQCRGP
Sbjct: 129 GYGSLDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVSGQLGPQCRGP 188

Query: 189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKD 248
           T+ +FVLD+ TK W + P LP PRYAPATQ+WRGRLHVMGGS ENR     DHWS+AVKD
Sbjct: 189 TSRSFVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVAFDHWSIAVKD 248

Query: 249 GKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD 308
           GK L+ EWR E+PIPRGGPHRACVV +D+LLVIGGQEGDFMAKP SPIFKCSRR E+   
Sbjct: 249 GKALD-EWREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFKCSRRREIFNG 307

Query: 309 DVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF 368
           +VYM+D+EMKWK+LP MPK +SHIE AW++VNNSIVIVGGTT+ HP TK++VLVGEIF+F
Sbjct: 308 EVYMMDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRF 367

Query: 369 NLNTL 373
            L+TL
Sbjct: 368 QLDTL 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DFF6|KLH20_XENLA Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 335 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 392

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 393 PTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 449

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 450 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 502

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 503 MIYAVGGRD 511

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Xenopus laevis (taxid: 8355)

>sp|Q5ZKD9|KLH20_CHICK Kelch-like protein 20 OS=Gallus gallus GN=KLHL20 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 341 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 398

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 399 PTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 455

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 456 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 508

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 509 MIYAVGGRD 517

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Gallus gallus (taxid: 9031)

>sp|B4J045|KLHDB_DROGR Kelch-like protein diablo OS=Drosophila grimshawi GN=dbo PE=3 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 KMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAH 162
           KM A    R  G  + + N LLY   G+    Y++S ++ Y+   N W      P     
Sbjct: 351 KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTSCR 408

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222
           + +G+     ++Y V GQ G QC     H    D +  KW  + P+   R   A  +  G
Sbjct: 409 TSVGVAVLDGFLYAVGGQDGVQCLN---HVERYDPKENKWSKVAPMTTRRLGVAVAVLSG 465

Query: 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282
            L+ +GGS        V+ +        P + +W    P+     H  C V ++ +  +G
Sbjct: 466 HLYAIGGSDGQCPLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518

Query: 283 GQE 285
           G++
Sbjct: 519 GRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila grimshawi (taxid: 7222)

>sp|B4L0G9|KLHDB_DROMO Kelch-like protein diablo OS=Drosophila mojavensis GN=dbo PE=3 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 KMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAH 162
           KM A    R  G  + + N LLY   G+    Y++S ++ Y+   N W      P     
Sbjct: 351 KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTSCR 408

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222
           + +G+     ++Y V GQ G QC     H    D +  KW  + P+   R   A  +  G
Sbjct: 409 TSVGVAVLDGFLYAVGGQDGVQCLN---HVERYDPKENKWSKVAPMTTRRLGVAVAVLSG 465

Query: 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282
            L+ +GGS        V+ +        P + +W    P+     H  C V ++ +  +G
Sbjct: 466 HLYAIGGSDGQCPLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518

Query: 283 GQE 285
           G++
Sbjct: 519 GRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila mojavensis (taxid: 7230)

>sp|B4LIG6|KLHDB_DROVI Kelch-like protein diablo OS=Drosophila virilis GN=dbo PE=3 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 KMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAH 162
           KM A    R  G  + + N LLY   G+    Y++S ++ Y+   N W      P     
Sbjct: 351 KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTSCR 408

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222
           + +G+     ++Y V GQ G QC     H    D +  KW  + P+   R   A  +  G
Sbjct: 409 TSVGVAVLDGFLYAVGGQDGVQC---LNHVERYDPKENKWSKVAPMTTRRLGVAVAVLSG 465

Query: 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282
            L+ +GGS        V+ +        P + +W    P+     H  C V ++ +  +G
Sbjct: 466 HLYAIGGSDGQCPLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518

Query: 283 GQE 285
           G++
Sbjct: 519 GRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila virilis (taxid: 7244)

>sp|D3Z8N4|KLH20_RAT Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 340 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 397

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 398 PTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 454

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 455 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 507

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 508 MIYAVGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2M5|KLH20_HUMAN Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 340 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 397

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 398 PTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 454

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 455 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 507

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 508 MIYAVGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Homo sapiens (taxid: 9606)

>sp|Q08DK3|KLH20_BOVIN Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 340 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 397

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 398 PTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 454

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 455 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 507

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 508 MIYAVGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Bos taurus (taxid: 9913)

>sp|Q8VCK5|KLH20_MOUSE Kelch-like protein 20 OS=Mus musculus GN=Klhl20 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 335 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 392

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 393 PTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 449

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 450 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 502

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 503 MIYAVGGRD 511

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
225452169	423	PREDICTED: kelch repeat-containing prote	0.902	0.834	0.770	1e-163
296090252	431	unnamed protein product [Vitis vinifera]	0.913	0.828	0.765	1e-163
225443351	426	PREDICTED: kelch repeat-containing prote	0.902	0.828	0.791	1e-163
224113255	424	predicted protein [Populus trichocarpa]	0.895	0.825	0.789	1e-163
12325370	1036	unknown protein; 27363-23366 [Arabidopsi	0.900	0.339	0.748	1e-162
255561818	425	conserved hypothetical protein [Ricinus	0.907	0.835	0.759	1e-161
224097430	424	predicted protein [Populus trichocarpa]	0.900	0.830	0.777	1e-161
145336621	415	kelch-like motif-containing protein [Ara	0.900	0.848	0.748	1e-159
449512779	383	PREDICTED: kelch repeat-containing prote	0.948	0.968	0.757	1e-158
449453359	427	PREDICTED: kelch repeat-containing prote	0.925	0.847	0.772	1e-157

>gi|225452169|ref|XP_002270625.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/358 (77%), Positives = 315/358 (87%), Gaps = 5/358 (1%)

Query: 18  VVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQK-GENIG 75
           V+L+ FV  LG  LVAD+ WAS+S    +YL+IASNW+   +S +++P N  +K  + + 
Sbjct: 15  VLLASFVGFLGAILVADYLWASAS---FAYLSIASNWALTKSSTVVIPTNFDEKLQQRVD 71

Query: 76  VKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY 135
           VK KK+    RIL ATF DLPAPELKWE+M+ APVPRLDGA+IQIKNLLYVFAGYG+++Y
Sbjct: 72  VKDKKNRTSGRILSATFADLPAPELKWEEMQPAPVPRLDGASIQIKNLLYVFAGYGTLNY 131

Query: 136 VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195
           VHSHVDIYN TDN WGGRFDMP+EMAHSHLGM TDGRYIY+V+GQYGPQCRGPTA  FVL
Sbjct: 132 VHSHVDIYNITDNAWGGRFDMPKEMAHSHLGMATDGRYIYIVSGQYGPQCRGPTARCFVL 191

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DTETKKWQDLP LP PRYAPATQLWRGRLHVMGG  ENR+TP ++HWSLAVK+GK LEKE
Sbjct: 192 DTETKKWQDLPTLPAPRYAPATQLWRGRLHVMGGGKENRHTPGLEHWSLAVKNGKALEKE 251

Query: 256 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 315
           WR+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR+EVVY+DVYMLDD
Sbjct: 252 WRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRHEVVYEDVYMLDD 311

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           EMKWKVLP MPKPDSHIEFAWV+VNNSI+IVGGTTEKHP TK+M+LVGE+FQF+L++L
Sbjct: 312 EMKWKVLPPMPKPDSHIEFAWVVVNNSIIIVGGTTEKHPVTKRMILVGEVFQFHLDSL 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090252|emb|CBI40071.3| unnamed protein product [Vitis vinifera]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/362 (76%), Positives = 316/362 (87%), Gaps = 5/362 (1%)

Query: 14  SPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQK-G 71
           S   V+L+ FV  LG  LVAD+ WAS+S    +YL+IASNW+   +S +++P N  +K  
Sbjct: 11  SKKLVLLASFVGFLGAILVADYLWASAS---FAYLSIASNWALTKSSTVVIPTNFDEKLQ 67

Query: 72  ENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYG 131
           + + VK KK+    RIL ATF DLPAPELKWE+M+ APVPRLDGA+IQIKNLLYVFAGYG
Sbjct: 68  QRVDVKDKKNRTSGRILSATFADLPAPELKWEEMQPAPVPRLDGASIQIKNLLYVFAGYG 127

Query: 132 SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAH 191
           +++YVHSHVDIYN TDN WGGRFDMP+EMAHSHLGM TDGRYIY+V+GQYGPQCRGPTA 
Sbjct: 128 TLNYVHSHVDIYNITDNAWGGRFDMPKEMAHSHLGMATDGRYIYIVSGQYGPQCRGPTAR 187

Query: 192 TFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKP 251
            FVLDTETKKWQDLP LP PRYAPATQLWRGRLHVMGG  ENR+TP ++HWSLAVK+GK 
Sbjct: 188 CFVLDTETKKWQDLPTLPAPRYAPATQLWRGRLHVMGGGKENRHTPGLEHWSLAVKNGKA 247

Query: 252 LEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY 311
           LEKEWR+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR+EVVY+DVY
Sbjct: 248 LEKEWRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRHEVVYEDVY 307

Query: 312 MLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN 371
           MLDDEMKWKVLP MPKPDSHIEFAWV+VNNSI+IVGGTTEKHP TK+M+LVGE+FQF+L+
Sbjct: 308 MLDDEMKWKVLPPMPKPDSHIEFAWVVVNNSIIIVGGTTEKHPVTKRMILVGEVFQFHLD 367

Query: 372 TL 373
           +L
Sbjct: 368 SL 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443351|ref|XP_002265018.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera] gi|297735771|emb|CBI18458.3| unnamed protein product [Vitis vinifera]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/359 (79%), Positives = 318/359 (88%), Gaps = 6/359 (1%)

Query: 19  VLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWS--PYHNSIILPNNGPQKG-ENIG 75
           V+S F  +L   LVAD  WASS   +S Y +IA+NW+     +++I+P+  PQK  E   
Sbjct: 16  VISCF-GLLAAGLVADLLWASSKS-SSGYHSIATNWAFDDSRSTVIVPHQQPQKAKEGSD 73

Query: 76  VKTKKDV-VPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID 134
           VK KK   VP+R+L ATF DLPAPEL+WEKM  APVPRLDGAAIQIKNLLYVFAGYG+ID
Sbjct: 74  VKDKKKADVPERVLSATFADLPAPELEWEKMAPAPVPRLDGAAIQIKNLLYVFAGYGTID 133

Query: 135 YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV 194
           +VHSHVD+YNFTDNTWGGRFDMP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA TFV
Sbjct: 134 FVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARTFV 193

Query: 195 LDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254
           LDT+TK+W D+PPLPVPRYAPATQLWRGRLHVMGGSGENR+TP ++HWSLAVK+GK LEK
Sbjct: 194 LDTKTKQWSDMPPLPVPRYAPATQLWRGRLHVMGGSGENRHTPALEHWSLAVKNGKALEK 253

Query: 255 EWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD 314
           EWR+EIPIPRGGPHRAC+VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVV+ DVYMLD
Sbjct: 254 EWRSEIPIPRGGPHRACIVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVFSDVYMLD 313

Query: 315 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           DEMKWK LP MPKPDSHIEFAWV+VN+SI+IVGGTTEKHP TKKMVLVGE+FQFNL++L
Sbjct: 314 DEMKWKNLPPMPKPDSHIEFAWVMVNHSIIIVGGTTEKHPITKKMVLVGEVFQFNLDSL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113255|ref|XP_002316438.1| predicted protein [Populus trichocarpa] gi|222865478|gb|EEF02609.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 282/357 (78%), Positives = 308/357 (86%), Gaps = 7/357 (1%)

Query: 22  IFVMILGFALVADFFWASSSKF-TSSYLNIASNWSPYHNS---IILPNNGPQKGENIGVK 77
           + V++LGF L+AD+ WASS  F +SSYL   SNW P  NS   +I+P   P   +    K
Sbjct: 16  LCVVLLGFGLIADYLWASSPHFASSSYL---SNWVPADNSQSHVIIPKQEPHHVDTKPPK 72

Query: 78  TKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVH 137
            K D V  R L ATF DLPAPELKWEKM  APVPRLDGAAIQIK+LLYVFAGYG+ID VH
Sbjct: 73  IKADGVHDRSLSATFADLPAPELKWEKMANAPVPRLDGAAIQIKDLLYVFAGYGTIDLVH 132

Query: 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT 197
           SHVDIYNFTDNTWG RF+MP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA  FVLDT
Sbjct: 133 SHVDIYNFTDNTWGRRFNMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARNFVLDT 192

Query: 198 ETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWR 257
           +TK+WQDLPPLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWSLAVKDGK LEKEWR
Sbjct: 193 KTKQWQDLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPALEHWSLAVKDGKALEKEWR 252

Query: 258 TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM 317
            EIPIPRGGPHRACVVV DRLL+IGGQEGDFMAKPGSPIFKCSRRNE+VYD+V+MLDDEM
Sbjct: 253 PEIPIPRGGPHRACVVVSDRLLIIGGQEGDFMAKPGSPIFKCSRRNEIVYDEVHMLDDEM 312

Query: 318 KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374
           KWK LP MPKPDSHIEFAW +VNNSIVI GGTTEKHPTTKKMVLVGE+F+FNL+TL 
Sbjct: 313 KWKPLPPMPKPDSHIEFAWAIVNNSIVIAGGTTEKHPTTKKMVLVGEVFRFNLDTLT 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12325370|gb|AAG52629.1|AC024261_16 unknown protein; 27363-23366 [Arabidopsis thaliana]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/358 (74%), Positives = 305/358 (85%), Gaps = 6/358 (1%)

Query: 16  ARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIG 75
            +VVL   + +L   L+ADF WA+S +F+S+ ++   +      ++I+P      G+   
Sbjct: 629 GKVVLVSCIALLATGLIADFLWATSHRFSSAAISAGLSLPSSLTTVIVP------GQEKD 682

Query: 76  VKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY 135
            K KKD V +R L  TFQDLPAPELKWEKM A+PVPRLDGAAIQI++LLYVFAGYG+ID 
Sbjct: 683 TKKKKDSVKERKLSNTFQDLPAPELKWEKMAASPVPRLDGAAIQIRDLLYVFAGYGTIDL 742

Query: 136 VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195
           VHSHVDIYNFTDN+WGGRF+MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVL
Sbjct: 743 VHSHVDIYNFTDNSWGGRFNMPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVL 802

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DT+T  W+D  PLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE E
Sbjct: 803 DTDTNTWKDFVPLPVPRYAPATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENE 862

Query: 256 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 315
           WR+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+
Sbjct: 863 WRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDE 922

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           EMKWKV+P MPKPDSHIEFAW +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTL
Sbjct: 923 EMKWKVMPPMPKPDSHIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTL 980

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561818|ref|XP_002521918.1| conserved hypothetical protein [Ricinus communis] gi|223538843|gb|EEF40442.1| conserved hypothetical protein [Ricinus communis]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 284/374 (75%), Positives = 320/374 (85%), Gaps = 19/374 (5%)

Query: 7   GKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNN 66
           GK  +T    R+VL + V +LGF  VA++ WASS    S+++N+  N+ P   ++ILP +
Sbjct: 6   GKQKST----RLVL-VCVALLGFGAVANYLWASSFPHLSNWVNV-DNYVP---NVILPKD 56

Query: 67  GPQKGENIGVKTKKDV--------VPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAI 118
             Q    +G   +K          +P+R L ATF DLPAP+LKWEKM +APVPRLDGAAI
Sbjct: 57  --QNPRQVGADKEKKPKKDKDKKDIPERFLSATFADLPAPDLKWEKMTSAPVPRLDGAAI 114

Query: 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT 178
           QIKNLLYVFAGYG+IDYVHSHVDIYNFTDNTWG RFDMP+EMAHSHLGMVTDGRYIYVV+
Sbjct: 115 QIKNLLYVFAGYGTIDYVHSHVDIYNFTDNTWGKRFDMPKEMAHSHLGMVTDGRYIYVVS 174

Query: 179 GQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE 238
           GQYGPQCRGPTAHTFVLDTETK+WQD+PPLPVPRYAPATQLWRGRLHVMGGS ENR+TP 
Sbjct: 175 GQYGPQCRGPTAHTFVLDTETKQWQDMPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPG 234

Query: 239 VDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 298
           ++HWSLAVKDGK LEKEWRTEIPIPRGGPHRACVVV+D+L+VIGGQEGDFMAKPGSPIFK
Sbjct: 235 LEHWSLAVKDGKALEKEWRTEIPIPRGGPHRACVVVNDQLIVIGGQEGDFMAKPGSPIFK 294

Query: 299 CSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKK 358
           CSRRNEVVY DVYMLDD+MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTT+KHP TKK
Sbjct: 295 CSRRNEVVYGDVYMLDDDMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTDKHPVTKK 354

Query: 359 MVLVGEIFQFNLNT 372
           M+L GE+FQFNL+ 
Sbjct: 355 MILNGEVFQFNLDN 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097430|ref|XP_002310931.1| predicted protein [Populus trichocarpa] gi|222850751|gb|EEE88298.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/355 (77%), Positives = 304/355 (85%), Gaps = 3/355 (0%)

Query: 22  IFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYH--NSIILPNNGPQKGENIGVKTK 79
           + V++LGF L+ D+ WASS  F SS   I++   P +  +++I+P   P   +    K K
Sbjct: 16  VCVVLLGFGLIGDYLWASSPHFASSSY-ISNRVPPKYPQSNVIIPKQEPHLADTKPQKIK 74

Query: 80  KDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH 139
            D V  R L ATF DLPAPELKWEKM  APVPRLDGAAIQIK+LLYVFAGYG+ID+VHSH
Sbjct: 75  VDGVHDRSLSATFADLPAPELKWEKMANAPVPRLDGAAIQIKDLLYVFAGYGTIDFVHSH 134

Query: 140 VDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 199
           VDIYNFT NTWGGRFDMP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA  FVLDTET
Sbjct: 135 VDIYNFTGNTWGGRFDMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARNFVLDTET 194

Query: 200 KKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE 259
           +KWQDLPPLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWSLAVKDGK LEKEWRTE
Sbjct: 195 RKWQDLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPALEHWSLAVKDGKALEKEWRTE 254

Query: 260 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKW 319
           IPIP GGPHRACVVV+DRLL+IGGQEGDFMAKPGSPIFKCSRRNE+VYD+VYMLDDEMKW
Sbjct: 255 IPIPHGGPHRACVVVNDRLLIIGGQEGDFMAKPGSPIFKCSRRNEIVYDEVYMLDDEMKW 314

Query: 320 KVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374
           K L  MPK DSHIEFAW +VNNSIVI GGTTEKHP TKKMVLVGE+FQFNL+TL 
Sbjct: 315 KPLSPMPKADSHIEFAWAIVNNSIVIAGGTTEKHPITKKMVLVGEVFQFNLDTLA 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336621|ref|NP_175565.2| kelch-like motif-containing protein [Arabidopsis thaliana] gi|28416695|gb|AAO42878.1| At1g51540 [Arabidopsis thaliana] gi|110743235|dbj|BAE99508.1| At1g51540 [Arabidopsis thaliana] gi|332194560|gb|AEE32681.1| kelch-like motif-containing protein [Arabidopsis thaliana]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/358 (74%), Positives = 305/358 (85%), Gaps = 6/358 (1%)

Query: 16  ARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIG 75
            +VVL   + +L   L+ADF WA+S +F+S+ ++   +      ++I+P      G+   
Sbjct: 8   GKVVLVSCIALLATGLIADFLWATSHRFSSAAISAGLSLPSSLTTVIVP------GQEKD 61

Query: 76  VKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY 135
            K KKD V +R L  TFQDLPAPELKWEKM A+PVPRLDGAAIQI++LLYVFAGYG+ID 
Sbjct: 62  TKKKKDSVKERKLSNTFQDLPAPELKWEKMAASPVPRLDGAAIQIRDLLYVFAGYGTIDL 121

Query: 136 VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195
           VHSHVDIYNFTDN+WGGRF+MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVL
Sbjct: 122 VHSHVDIYNFTDNSWGGRFNMPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVL 181

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DT+T  W+D  PLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE E
Sbjct: 182 DTDTNTWKDFVPLPVPRYAPATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENE 241

Query: 256 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 315
           WR+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+
Sbjct: 242 WRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDE 301

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           EMKWKV+P MPKPDSHIEFAW +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTL
Sbjct: 302 EMKWKVMPPMPKPDSHIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTL 359

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449512779|ref|XP_004164137.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/384 (75%), Positives = 327/384 (85%), Gaps = 13/384 (3%)

Query: 6   VGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSP-YHNSIILP 64
           + + S+  +  ++VL I + +LGFAL+AD+ WASSS+  S  L+IASNW+P YH    +P
Sbjct: 1   MARPSSKHASLKLVL-ICLALLGFALIADYIWASSSR-FSYSLSIASNWAPPYHPDTSIP 58

Query: 65  ------NNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAI 118
                 +  P KGE    K  KDV P R L ATF DLPAPEL W+KM  APVPRLDGAAI
Sbjct: 59  VTTKPDSANPTKGE--AAKGGKDVNPGRALSATFADLPAPELTWKKMTTAPVPRLDGAAI 116

Query: 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT 178
           QIKNLL+VFAGYG+ID VHSHVD+YNFTDNTWGGRFDMP+EMAHSHLGM TDGRYIYVVT
Sbjct: 117 QIKNLLFVFAGYGTIDSVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMATDGRYIYVVT 176

Query: 179 GQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE 238
           GQYGPQCRGPTAHTFVLDTET++WQD+PPLPVPRYAPATQLWRGRLHVMGGS ENR+TP 
Sbjct: 177 GQYGPQCRGPTAHTFVLDTETRQWQDMPPLPVPRYAPATQLWRGRLHVMGGSMENRHTPA 236

Query: 239 VDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 298
           ++HWSLAVKDGK LEKEWR+EIPIPRGGPHRAC+VVDDRL VIGGQEGDFMAKPGSPIFK
Sbjct: 237 LEHWSLAVKDGKALEKEWRSEIPIPRGGPHRACIVVDDRLYVIGGQEGDFMAKPGSPIFK 296

Query: 299 CSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKK 358
           CSRRNEVVY DVYMLDD+MKWKVLPSMPKPDSHIEFAWV+VNNSIVIVGGTT+KHP TKK
Sbjct: 297 CSRRNEVVYSDVYMLDDDMKWKVLPSMPKPDSHIEFAWVVVNNSIVIVGGTTDKHPQTKK 356

Query: 359 MVLVGEIFQFNLNTLVS--AFYPF 380
           MVL GE+FQF+L   VS   ++P+
Sbjct: 357 MVLNGEVFQFSLRLQVSLILYFPY 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453359|ref|XP_004144425.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/373 (77%), Positives = 321/373 (86%), Gaps = 11/373 (2%)

Query: 6   VGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSP-YHNSIILP 64
           + + S+  +  ++VL I + +LGFAL+AD+ WASSS+  S  L+IASNW+P YH    +P
Sbjct: 1   MARPSSKHASLKLVL-ICLALLGFALIADYIWASSSR-FSYSLSIASNWAPPYHPDTSIP 58

Query: 65  ------NNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAI 118
                 +  P KGE    K  KDV P R L ATF DLPAPEL W+KM  APVPRLDGAAI
Sbjct: 59  VTTKPDSANPTKGE--AAKGGKDVNPGRALSATFADLPAPELTWKKMTTAPVPRLDGAAI 116

Query: 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT 178
           QIKNLL+VFAGYG+ID VHSHVD+YNFTDNTWGGRFDMP+EMAHSHLGM TDGRYIYVVT
Sbjct: 117 QIKNLLFVFAGYGTIDSVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMATDGRYIYVVT 176

Query: 179 GQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE 238
           GQYGPQCRGPTAHTFVLDTET++WQD+PPLPVPRYAPATQLWRGRLHVMGGS ENR+TP 
Sbjct: 177 GQYGPQCRGPTAHTFVLDTETRQWQDMPPLPVPRYAPATQLWRGRLHVMGGSMENRHTPA 236

Query: 239 VDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 298
           ++HWSLAVKDGK LEKEWR+EIPIPRGGPHRAC+VVDDRL VIGGQEGDFMAKPGSPIFK
Sbjct: 237 LEHWSLAVKDGKALEKEWRSEIPIPRGGPHRACIVVDDRLYVIGGQEGDFMAKPGSPIFK 296

Query: 299 CSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKK 358
           CSRRNEVVY DVYMLDD+MKWKVLPSMPKPDSHIEFAWV+VNNSIVIVGGTT+KHP TKK
Sbjct: 297 CSRRNEVVYSDVYMLDDDMKWKVLPSMPKPDSHIEFAWVVVNNSIVIVGGTTDKHPQTKK 356

Query: 359 MVLVGEIFQFNLN 371
           MVL GE+FQF+L 
Sbjct: 357 MVLNGEVFQFSLR 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2033944	415	AT1G51540 [Arabidopsis thalian	0.897	0.845	0.750	3.8e-149
TAIR|locus:2086528	426	AT3G27220 "AT3G27220" [Arabido	0.905	0.830	0.635	1e-123
UNIPROTKB|G4N9D1	338	MGG_10013 "Uncharacterized pro	0.618	0.715	0.246	1.4e-09
MGI|MGI:2442630	350	Klhdc8a "kelch domain containi	0.488	0.545	0.271	9.5e-09
UNIPROTKB|Q6DFF6	604	klhl20 "Kelch-like protein 20"	0.439	0.284	0.252	2.1e-08
UNIPROTKB|F1NMM8	609	KLHL20 "Kelch-like protein 20"	0.439	0.282	0.252	2.2e-08
UNIPROTKB|Q5ZKD9	610	KLHL20 "Kelch-like protein 20"	0.439	0.281	0.252	2.2e-08
UNIPROTKB|F1NGH0	617	KLHL20 "Kelch-like protein 20"	0.439	0.278	0.252	2.2e-08
ZFIN|ZDB-GENE-040426-1935	591	klhl20 "kelch-like 20 (Drosoph	0.439	0.291	0.252	2.6e-08
UNIPROTKB|B4DUR0	420	KLHL20 "Kelch-like protein 20"	0.439	0.409	0.247	3.1e-08

TAIR|locus:2033944 AT1G51540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
 Identities = 268/357 (75%), Positives = 305/357 (85%)

Query:    17 RVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGV 76
             +VVL   + +L   L+ADF WA+S +F+S+ ++   +      ++I+P      G+    
Sbjct:     9 KVVLVSCIALLATGLIADFLWATSHRFSSAAISAGLSLPSSLTTVIVP------GQEKDT 62

Query:    77 KTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYV 136
             K KKD V +R L  TFQDLPAPELKWEKM A+PVPRLDGAAIQI++LLYVFAGYG+ID V
Sbjct:    63 KKKKDSVKERKLSNTFQDLPAPELKWEKMAASPVPRLDGAAIQIRDLLYVFAGYGTIDLV 122

Query:   137 HSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD 196
             HSHVDIYNFTDN+WGGRF+MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVLD
Sbjct:   123 HSHVDIYNFTDNSWGGRFNMPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVLD 182

Query:   197 TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEW 256
             T+T  W+D  PLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE EW
Sbjct:   183 TDTNTWKDFVPLPVPRYAPATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENEW 242

Query:   257 RTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDE 316
             R+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+E
Sbjct:   243 RSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDEE 302

Query:   317 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
             MKWKV+P MPKPDSHIEFAW +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTL
Sbjct:   303 MKWKVMPPMPKPDSHIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTL 359

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2086528 AT3G27220 "AT3G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
 Identities = 232/365 (63%), Positives = 279/365 (76%)

Query:    14 SPARVVLSI-FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHN-SIILP---NNGP 68
             S  R++L + F  +LG   +A F   SSS    S   + S W P +   I +P   +   
Sbjct:    14 SSRRLMLVLYFTSVLGIGFIAAFLCLSSS--IPSVSAVFSIWVPVNRPEIQIPIIDSKIV 71

Query:    69 QKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFA 128
             QK       TK  V   R L A F D+PAPELKWE+M++APVPRLDG ++QI NLLYVF+
Sbjct:    72 QKRSKQSNDTKDHV---RFLSAIFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFS 128

Query:   129 GYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP 188
             GYGS+DYVHSHVD++NFTDN W  RF  P+EMA+SHLG+VTDGRY+YVV+GQ GPQCRGP
Sbjct:   129 GYGSLDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVSGQLGPQCRGP 188

Query:   189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKD 248
             T+ +FVLD+ TK W + P LP PRYAPATQ+WRGRLHVMGGS ENR     DHWS+AVKD
Sbjct:   189 TSRSFVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVAFDHWSIAVKD 248

Query:   249 GKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD 308
             GK L+ EWR E+PIPRGGPHRACVV +D+LLVIGGQEGDFMAKP SPIFKCSRR E+   
Sbjct:   249 GKALD-EWREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFKCSRRREIFNG 307

Query:   309 DVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF 368
             +VYM+D+EMKWK+LP MPK +SHIE AW++VNNSIVIVGGTT+ HP TK++VLVGEIF+F
Sbjct:   308 EVYMMDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRF 367

Query:   369 NLNTL 373
              L+TL
Sbjct:   368 QLDTL 372

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|G4N9D1 MGG_10013 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 165 (63.1 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 68/276 (24%), Positives = 115/276 (41%)

Query:    88 LPATFQDLPAPELKWEKMKAAPV-PRLDGAAIQIKNLLYVFAGYGSIDYVH------SHV 140
             L A+   LPA    W+ +   P+ P+ + +   I + +Y+  G   +          S++
Sbjct:    15 LVASAVSLPARSNSWQLLAPIPLGPQQEESVASIGSDIYIVGGINLVPANRTTIPSVSYM 74

Query:   141 DIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200
              +Y+   NTW    D+P  + H+++  +  G  ++V+    G     P A+++  D  T 
Sbjct:    75 QVYSTAANTWRRVADIPTPVNHANMASL--GGKLFVLGAIAGQGVNYPIANSYAYDPATD 132

Query:   201 KWQDLPPLPV--PRYAPATQLWRGRLHVMGGSGENRYTPEVDH---WSLAVKDGKPLEKE 255
              W  LPP+P    R A A  +W   + + GG     +         W+ ++ + + L+  
Sbjct:   133 AWSALPPMPAGTERGASAVGVWGDNIVIAGGLNYTNFLNSAQTTVPWT-SMFNTRTLQ-- 189

Query:   256 WRTEIP-IPRGG-PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML 313
             W T  P +P GG  H   VV+ +   V+GG+        G      + R  V+  D+   
Sbjct:   190 WDTAFPDLPDGGRDHCGGVVLGNTFYVVGGRVS------GEK----NVRGTVLAMDLSKA 239

Query:   314 DDEMKWKVLPS-MPKPDSHIEFAWVLVNNSIVIVGG 348
               E  W  L   MP P   I  A  LVN  +   GG
Sbjct:   240 KRE--WVELKGKMPTPRGSISTA--LVNGKVYTFGG 271

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:2442630 Klhdc8a "kelch domain containing 8A" [Mus musculus (taxid:10090)]

 Score = 141 (54.7 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
 Identities = 57/210 (27%), Positives = 93/210 (44%)

Query:    88 LPATFQDLPAPEL-KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT 146
             +P    ++ +PE  +W  + + P  R   A   +   + V  G G+       V++YN  
Sbjct:    44 VPMDCFEVYSPEADQWTSLPSLPTARAGVAITALGKRIMVIGGVGTNQLPVKVVEMYNID 103

Query:   147 DNTWGGRFDMPREMAHSHLGM-VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205
             +  W  R  + RE A   +G+ VT   Y     G  G   R P  +    D     W  L
Sbjct:   104 EGKWKKR-SVLREAA---MGISVTAKDYRVYAAGGMGLDLR-PHNYLQHYDMLKDMWVSL 158

Query:   206 PPLPVPRYAPATQLWRG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP-IP 263
              P+P PRYA AT   RG +++V+GG  +++Y       +  V D +   + W T+ P IP
Sbjct:   159 APMPTPRYA-ATSFLRGSKIYVLGGR-QSKYAVN----AFEVFDIE--SRSW-TKFPNIP 209

Query:   264 RGGPHRACVVVDDRLLVIGG-QEGDFMAKP 292
                   + V +D+ L  +GG ++G    +P
Sbjct:   210 CKRAFSSFVTLDNHLYSLGGLRQGRLYRQP 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6DFF6 klhl20 "Kelch-like protein 20" [Xenopus laevis (taxid:8355)]

 Score = 159 (61.0 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   339 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 395

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   396 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 452

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   453 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 505

Query:   280 VIGGQE 285
              +GG++
Sbjct:   506 AVGGRD 511

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0044444 "cytoplasmic part" evidence=ISS

UNIPROTKB|F1NMM8 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   344 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 400

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   401 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 457

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   458 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 510

Query:   280 VIGGQE 285
              +GG++
Sbjct:   511 AVGGRD 516

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q5ZKD9 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   345 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 401

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   402 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 458

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   459 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 511

Query:   280 VIGGQE 285
              +GG++
Sbjct:   512 AVGGRD 517

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044444 "cytoplasmic part" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|F1NGH0 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   352 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 408

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   409 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 465

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   466 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 518

Query:   280 VIGGQE 285
              +GG++
Sbjct:   519 AVGGRD 524

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-040426-1935 klhl20 "kelch-like 20 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   326 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 382

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   383 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 439

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   440 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTVAPMGTRRKHLGCAVYQDMIY 492

Query:   280 VIGGQE 285
              +GG++
Sbjct:   493 SVGGRD 498

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4DUR0 KLHL20 "Kelch-like protein 20" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 46/186 (24%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   155 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 211

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   212 TCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 268

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   269 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 321

Query:   280 VIGGQE 285
              +GG++
Sbjct:   322 AVGGRD 327

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3.n1	LOW CONFIDENCE prediction!
3rd Layer	5.1.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020557001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (423 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	3e-12
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-10
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-08
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	3e-08
TIGR03548	323	TIGR03548, mutarot_permut, cyclically-permuted mut	5e-07
pfam13964	50	pfam13964, Kelch_6, Kelch motif	4e-05
smart00612	47	smart00612, Kelch, Kelch domain	3e-04
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	4e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	4e-04
COG3055	381	COG3055, COG3055, Uncharacterized protein conserve	6e-04
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.001
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	0.002
pfam01344	46	pfam01344, Kelch_1, Kelch motif	0.003

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 30/158 (18%)

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DT+TK W  +P L  PR  P   ++  R++V+GG   +     V+ W       KP E +
Sbjct: 317 DTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESW-------KPGESK 369

Query: 256 WRTEIPI--PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML 313
           WR E P+  PR  P    V V++ + VIGG            I K    N+ +   V   
Sbjct: 370 WREEPPLIFPRYNP--CVVNVNNLIYVIGG------------ISK----NDELLKTVECF 411

Query: 314 D-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTT 350
             +  KW      P P SH     +  +  I ++GG +
Sbjct: 412 SLNTNKWSKG--SPLPISHYGGCAIYHDGKIYVIGGIS 447

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 55/236 (23%), Positives = 87/236 (36%), Gaps = 32/236 (13%)

Query: 116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM--PREMAHSHLGMVTDGRY 173
            ++ + N++Y   G    +   + V  Y+    +W    ++  PR+      G+      
Sbjct: 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP----GVTVFNNR 344

Query: 174 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN 233
           IYV+ G Y                   KW++ PPL  PRY P        ++V+GG  +N
Sbjct: 345 IYVIGGIYN---SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKN 401

Query: 234 RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPG 293
                 D     V+       +W    P+P        +  D ++ VIGG          
Sbjct: 402 ------DELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI--------- 446

Query: 294 SPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
           S I      N  VY+ V   +    KW  L S+  P   I  +  + NN I +VGG
Sbjct: 447 SYI-----DNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGG 495

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 99  ELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR 158
           E KW +      PR +   + + NL+YV  G    D +   V+ ++   N W        
Sbjct: 367 ESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW----SKGS 422

Query: 159 EMAHSHLGMVTDGR--YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
            +  SH G         IYV+ G                +  T KW +L  L  PR   +
Sbjct: 423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINAS 482

Query: 217 TQLWRGRLHVMGGSGENRYTPEVD 240
             ++  +++V+GG     Y  E++
Sbjct: 483 LCIFNNKIYVVGGDKYEYYINEIE 506

Length = 534

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP 157
           PR    +  I    LY+F G      V S V +++ + NTW     +P
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLP 48

Length = 49

>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 45/205 (21%)

Query: 100 LKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
           LKW K    P     GA+I  +N +Y   G  S +   S   +Y  T +      +    
Sbjct: 51  LKWVKAGQLPYAAAYGASISTENGIYYIGGSNSSE---SFSSVYRITLD------ESKEA 101

Query: 160 MAHSHL-----------GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL 208
           +    L               DG+ +YV  G        P+   +  + ET++W++LP  
Sbjct: 102 LIIETLPSLPFAMDNGSATYKDGK-LYVGGGN---ANGKPSNKFYCFNLETQEWEELPDF 157

Query: 209 PV-PRYAPATQLWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEI 260
           P  PR  P     +  L+V GG G+N       +Y+P+   W       + +        
Sbjct: 158 PGAPRVQPVCVKLQNELYVFGG-GDNIAYTDGYKYSPKTGTW-------EKVADPLSDGE 209

Query: 261 PIPRGGPHRACVVV--DDRLLVIGG 283
           PI   G   A  +   +  LL IGG
Sbjct: 210 PISLLG---AASIAINESLLLCIGG 231

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR 212
             +    V+ G  IYV  G              V D ET  W+ LPPLP PR
Sbjct: 1   PRTGHSAVSVGGKIYVFGGYSNGSKASNKVL--VYDPETGSWEKLPPLPTPR 50

Length = 50

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 174 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           IYVV G  G Q         V D ET KW  LP +P PR    
Sbjct: 2   IYVVGGFDGGQR---LKSVEVYDPETNKWTPLPSMPTPRSGHG 41

Length = 47

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRY 213
           G  IYV  G      R      +V D +T  W+ L  LP PR 
Sbjct: 1   GGKIYVFGGLGDGGTR--LNDLWVYDLDTNTWEKLGDLPGPRA 41

Length = 48

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 209
           S  G+V  G  IYV+ G  G Q     +   V D ET  W  LP +P
Sbjct: 3   SGAGVVVLGGKIYVIGGYDGGQ---SLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 67/325 (20%), Positives = 103/325 (31%), Gaps = 75/325 (23%)

Query: 94  DLPAPELKWEKMKAAPVPRLDGAA---IQIKNLLYVFAGYG----SIDYVHSHVDIYNFT 146
           DL  P   W K+   P    + A    I  K  LYVF GYG    S   V +    Y+ +
Sbjct: 64  DLKKPGKGWTKIADFPGGARNQAVAAVIGGK--LYVFGGYGKSVSSSPQVFNDAYRYDPS 121

Query: 147 DNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQ---------YGPQCRGPT------- 189
            N+W       P  +         +G  IY   G                G         
Sbjct: 122 TNSWHKLDTRSPTGLV-GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKI 180

Query: 190 -AHTFVLDTETKKWQDLPPLPVPRYAPATQLWR--GRLHVMG--GSGENRYTPEVDHWSL 244
            AH F    E   +       V  Y P+T  WR  G     G  GS       ++   + 
Sbjct: 181 IAHYFDKKAEDYFFNKE----VLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLING 236

Query: 245 AVKDGKPLEKEWRTEI-------------PIPRGGPHRACV-----VVDDRLLVIGG--- 283
            +K G    +  + +              P P G              +  +LV GG   
Sbjct: 237 EIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANF 296

Query: 284 -------QEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW 336
                  + G F A  G    K          +VY+ D+   WK++  +P+  ++     
Sbjct: 297 PGALKAYKNGKFYAHEGLS--KSWN------SEVYIFDNG-SWKIVGELPQGLAY--GVS 345

Query: 337 VLVNNSIVIVGGTTEKHPTTKKMVL 361
           +  NN ++++GG T     T ++  
Sbjct: 346 LSYNNKVLLIGGETSGGKATTRVYS 370

Length = 381

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 67/334 (20%), Positives = 110/334 (32%), Gaps = 87/334 (26%)

Query: 94  DLPAPELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTD 147
           DL AP   W K+ A P  PR    A  I   LYVF G G  +      V   V  Y+   
Sbjct: 56  DLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT 115

Query: 148 NTWGGRFDMPREMAHSHLGMV------TDGRYIYVVTG---------------------- 179
           N+W       +    S +G+             Y+  G                      
Sbjct: 116 NSW------QKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTP 169

Query: 180 ------QY---GPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGG 229
                  Y    P+           D  T +W++    P +     A  +   +L ++  
Sbjct: 170 KDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLI-- 227

Query: 230 SGENR---YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV------VVDDRLLV 280
           +GE +    T  V         G  L+ +   ++P   GG  +  V        +  LLV
Sbjct: 228 NGEIKPGLRTDAV---KQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLV 284

Query: 281 IGG----------QEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDS 330
            GG          Q G   A  G          +   D++Y L +  KW+ +  +P+  +
Sbjct: 285 AGGANFPGARENYQNGKLYAHEG--------LKKSWSDEIYALVNG-KWQKVGELPQGLA 335

Query: 331 H-IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVG 363
           + +  +W   NN ++++GG T        + L+ 
Sbjct: 336 YGVSVSW---NNGVLLIGGETAGGKAVSDVTLLS 366

Length = 376

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 263 PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV 321
           PR   H +  + D RL + GG+  D                  V  DV++ D     W  
Sbjct: 1   PRAY-HTSTSIGDGRLYLFGGENEDG----------------SVLSDVWVFDLSTNTWTR 43

Query: 322 LPSMP 326
           LPS+P
Sbjct: 44  LPSLP 48

Length = 49

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW 150
           PR     + +   +YV  GY     + S V++Y+   NTW
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYDGGQSLSS-VEVYDPETNTW 39

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
PLN02153	341	epithiospecifier protein	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.96
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.96
KOG1230	521	consensus Protein containing repeated kelch motifs	99.96
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.95
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.94
KOG1230	521	consensus Protein containing repeated kelch motifs	99.93
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.83
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.82
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.47
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.46
PF13964	50	Kelch_6: Kelch motif	99.32
PF13964	50	Kelch_6: Kelch motif	99.31
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.18
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.06
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.01
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	99.01
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	99.0
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.97
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.91
smart00612	47	Kelch Kelch domain.	98.87
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.85
smart00612	47	Kelch Kelch domain.	98.7
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.67
PLN02772	398	guanylate kinase	98.61
PF13854	42	Kelch_5: Kelch motif	98.6
PLN02772	398	guanylate kinase	98.5
PF13854	42	Kelch_5: Kelch motif	98.35
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.28
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.18
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.12
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.11
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.86
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.79
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.61
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.6
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.34
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.21
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.62
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.38
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.27
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.24
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.06
PRK13684	334	Ycf48-like protein; Provisional	94.9
KOG2055	514	consensus WD40 repeat protein [General function pr	94.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	94.68
KOG2055	514	consensus WD40 repeat protein [General function pr	94.33
PRK13684	334	Ycf48-like protein; Provisional	94.18
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	93.42
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.34
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.42
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	91.41
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	91.05
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.0
KOG0649	325	consensus WD40 repeat protein [General function pr	90.82
PRK04792	448	tolB translocation protein TolB; Provisional	90.8
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	90.4
PRK04922	433	tolB translocation protein TolB; Provisional	89.78
KOG0772	641	consensus Uncharacterized conserved protein, conta	89.52
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.43
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.4
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	89.37
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	89.24
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	89.2
PRK05137	435	tolB translocation protein TolB; Provisional	89.13
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	88.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	88.88
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.33
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	87.8
PRK04792	448	tolB translocation protein TolB; Provisional	87.26
smart00284	255	OLF Olfactomedin-like domains.	87.16
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	86.85
PRK00178	430	tolB translocation protein TolB; Provisional	86.4
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	85.73
KOG0310	487	consensus Conserved WD40 repeat-containing protein	85.5
COG4946	668	Uncharacterized protein related to the periplasmic	85.11
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	83.77
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	83.22
KOG0296	399	consensus Angio-associated migratory cell protein	82.6
smart00284	255	OLF Olfactomedin-like domains.	82.18
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	81.75

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5.1e-45  Score=359.89  Aligned_cols=276  Identities=20%  Similarity=0.306  Sum_probs=233.5

Q ss_pred             CCCC-CCceeeEeecCcccccccccccccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEE
Q 016328           66 NGPQ-KGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYN  144 (391)
Q Consensus        66 ~~~r-~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd  144 (391)
                      ..+| ...+.....++....++. .+.+..||+.++.|..+++||.+|..+++++++++|||+||.+.....++++|+||
T Consensus       277 t~~r~~~~~~l~~vGG~~~~~~~-~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD  355 (571)
T KOG4441|consen  277 TRPRRSVSGKLVAVGGYNRQGQS-LRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYD  355 (571)
T ss_pred             cccCcCCCCeEEEECCCCCCCcc-cceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEec
Confidence            4555 344555555554433333 34889999999999999999999999999999999999999995444578899999


Q ss_pred             CCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEE
Q 016328          145 FTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRL  224 (391)
Q Consensus       145 ~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i  224 (391)
                      +.+|+|..+++|+.  +|..+++++++|.||++||.++...   ++++|+|||.+++|+.+++|+.+|++|++++++++|
T Consensus       356 ~~~~~W~~~a~M~~--~R~~~~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  356 PRTNQWTPVAPMNT--KRSDFGVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL  430 (571)
T ss_pred             CCCCceeccCCccC--ccccceeEEECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence            99999999999999  8999999999999999999998765   789999999999999999999999999999999999


Q ss_pred             EEEccCCCCc-cCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCC
Q 016328          225 HVMGGSGENR-YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRN  303 (391)
Q Consensus       225 yv~GG~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~  303 (391)
                      |++||.++.. ...+       +++|||.+++|+.+++|+..|.++++++++++||++||.++..               
T Consensus       431 Yi~GG~~~~~~~l~s-------ve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~---------------  488 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNS-------VECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS---------------  488 (571)
T ss_pred             EEEcCcCCCccccce-------EEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC---------------
Confidence            9999987765 4444       4455699999999999999999999999999999999998732               


Q ss_pred             ceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccccCCC
Q 016328          304 EVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPF  380 (391)
Q Consensus       304 ~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~lp~  380 (391)
                        ....+++|| .+++|+.+++|+.+|...  ++++++++||++||+++....       +.+.+||+++++|...+.
T Consensus       489 --~~~~VE~ydp~~~~W~~v~~m~~~rs~~--g~~~~~~~ly~vGG~~~~~~l-------~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  489 --ALSSVERYDPETNQWTMVAPMTSPRSAV--GVVVLGGKLYAVGGFDGNNNL-------NTVECYDPETDTWTEVTE  555 (571)
T ss_pred             --ccceEEEEcCCCCceeEcccCccccccc--cEEEECCEEEEEecccCcccc-------ceeEEcCCCCCceeeCCC
Confidence              244599999 999999999999888765  558999999999998776543       367888887666654443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.2e-43  Score=348.28  Aligned_cols=275  Identities=19%  Similarity=0.270  Sum_probs=240.4

Q ss_pred             eecCEEEEecCCCC-cccceeEeeecCCCCe-eecCC-CCCCCCceeeEeecC-ccccccc----ccccccccccccCce
Q 016328           31 LVADFFWASSSKFT-SSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTKK-DVVPKRI----LPATFQDLPAPELKW  102 (391)
Q Consensus        31 ~~~~~ly~~GG~~~-~~~~~~~~~~d~~~~~-~~lp~-~~~r~~~g~~~~~~~-~~~~~~~----~~~~~~~~d~~~~~W  102 (391)
                      ...+.||++||... ...++.++.|||.+++ ..+.+ +.+|..++++++.+. |+.+|..    ..+.+++||+.+++|
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence            56789999999886 7788999999999999 77766 778888888888776 6666543    456899999999999


Q ss_pred             EEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccC
Q 016328          103 EKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYG  182 (391)
Q Consensus       103 ~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~  182 (391)
                      ..+++|+.+|..++++++++.||++||.++... ++++|+|||.+++|+.+++|+.  +|+.+++++.+++||++||.++
T Consensus       362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             eccCCccCccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCC
Confidence            999999999999999999999999999997766 5679999999999999999998  8999999999999999999988


Q ss_pred             CCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCC
Q 016328          183 PQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI  262 (391)
Q Consensus       183 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~  262 (391)
                      ...  .++++++|||.+++|+.+++|+.+|.++++++++++||++||.++......       ++.|||++++|+.+++|
T Consensus       439 ~~~--~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~-------VE~ydp~~~~W~~v~~m  509 (571)
T KOG4441|consen  439 SSN--CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSS-------VERYDPETNQWTMVAPM  509 (571)
T ss_pred             Ccc--ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccce-------EEEEcCCCCceeEcccC
Confidence            763  389999999999999999999999999999999999999999987322222       55667999999999999


Q ss_pred             CCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCcee
Q 016328          263 PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (391)
Q Consensus       263 p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~  334 (391)
                      +..+..+++++++++||++||.++..                 +++.+.+|| .+++|+.+.++...+..+++
T Consensus       510 ~~~rs~~g~~~~~~~ly~vGG~~~~~-----------------~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~  565 (571)
T KOG4441|consen  510 TSPRSAVGVVVLGGKLYAVGGFDGNN-----------------NLNTVECYDPETDTWTEVTEPESGRGGAGV  565 (571)
T ss_pred             ccccccccEEEECCEEEEEecccCcc-----------------ccceeEEcCCCCCceeeCCCccccccCcce
Confidence            99999999999999999999987664                 577799999 99999999985544444333

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=8.2e-43  Score=345.65  Aligned_cols=259  Identities=16%  Similarity=0.193  Sum_probs=217.7

Q ss_pred             ccccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~  169 (391)
                      ..+++||+.+++|..+++||.+|..+++++++++|||+||.+......+++++||+.+++|..+++||.  +|..+++++
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~  349 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAV  349 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEE
Confidence            367899999999999999999999999999999999999986444446789999999999999999998  788999999


Q ss_pred             eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCc-cCCCc---------
Q 016328          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR-YTPEV---------  239 (391)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~---------  239 (391)
                      ++++||++||.++...   .+++++|||.+++|+.+++||.+|..+++++++++||++||.+... +.+..         
T Consensus       350 ~~g~IYviGG~~~~~~---~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        350 IDDTIYAIGGQNGTNV---ERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             ECCEEEEECCcCCCCC---CceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence            9999999999876542   6889999999999999999999999999999999999999976421 00000         


Q ss_pred             -cceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-Cc-
Q 016328          240 -DHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE-  316 (391)
Q Consensus       240 -~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~-  316 (391)
                       ......+++|||++++|+.+++|+.+|..+++++++++||++||.++...                ....+++|| .+ 
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~----------------~~~~ve~Ydp~~~  490 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN----------------VKTCIFRYNTNTY  490 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc----------------cceeEEEecCCCC
Confidence             01123467888999999999999999999999999999999999864321                123479999 77 


Q ss_pred             CcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccccCCCc
Q 016328          317 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFN  381 (391)
Q Consensus       317 ~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~lp~~  381 (391)
                      ++|+.+++||.+|..  +++++++|+||++||+++..          .+.+||+.+++|..+...
T Consensus       491 ~~W~~~~~m~~~r~~--~~~~~~~~~iyv~Gg~~~~~----------~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        491 NGWELITTTESRLSA--LHTILHDNTIMMLHCYESYM----------LQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             CCeeEccccCccccc--ceeEEECCEEEEEeeeccee----------ehhhcCcccccccchhhh
Confidence            799999999988875  46689999999999998632          578899988888877544

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.5e-40  Score=313.09  Aligned_cols=292  Identities=20%  Similarity=0.277  Sum_probs=214.2

Q ss_pred             HHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEc
Q 016328           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM  105 (391)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~  105 (391)
                      .|+++++++.||++||.....                                       ....+.+++||+.+++|+++
T Consensus        25 ~h~~~~~~~~iyv~GG~~~~~---------------------------------------~~~~~~~~~yd~~~~~W~~~   65 (341)
T PLN02153         25 SHGIAVVGDKLYSFGGELKPN---------------------------------------EHIDKDLYVFDFNTHTWSIA   65 (341)
T ss_pred             cceEEEECCEEEEECCccCCC---------------------------------------CceeCcEEEEECCCCEEEEc
Confidence            799999999999999964311                                       01223678888899999998


Q ss_pred             cCCC-CCcc---CceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC---CCCcceEEEEEeCCEEEEEe
Q 016328          106 KAAP-VPRL---DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR---EMAHSHLGMVTDGRYIYVVT  178 (391)
Q Consensus       106 ~~~p-~~r~---~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~~~r~~~~~~~~~~~iyv~G  178 (391)
                      ++++ .||.   +|++++++++||||||.+.... ++++++||+.+++|+.+++|+.   |.+|..|++++.+++|||+|
T Consensus        66 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~G  144 (341)
T PLN02153         66 PANGDVPRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG  144 (341)
T ss_pred             CccCCCCCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEEC
Confidence            8764 4443   7888999999999999876544 5679999999999999887722   44789999999999999999


Q ss_pred             CccCCCCC---CCcceeEEEeCCCCceEECCCCC---CCCCCceEEEECCEEEEEccCCCCccCC-CccceEeeeecCCc
Q 016328          179 GQYGPQCR---GPTAHTFVLDTETKKWQDLPPLP---VPRYAPATQLWRGRLHVMGGSGENRYTP-EVDHWSLAVKDGKP  251 (391)
Q Consensus       179 G~~~~~~~---~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~~~~~-~~~~~~~~~~~~d~  251 (391)
                      |.+.....   ..++++++||+++++|+.++++.   .+|..|++++++++|||+||........ ........++.||+
T Consensus       145 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~  224 (341)
T PLN02153        145 GVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP  224 (341)
T ss_pred             CccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence            98643211   12578999999999999998764   7899999999999999999975321000 00001123566789


Q ss_pred             ccCCceeecC---CCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCC--
Q 016328          252 LEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM--  325 (391)
Q Consensus       252 ~~~~W~~~~~---~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~--  325 (391)
                      ++++|+.+++   +|.+|..+++++++++||||||......        ........+.+++|+|| ++++|+.+...  
T Consensus       225 ~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~  296 (341)
T PLN02153        225 ASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL--------KGHLGPGTLSNEGYALDTETLVWEKLGECGE  296 (341)
T ss_pred             CCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcc--------ccccccccccccEEEEEcCccEEEeccCCCC
Confidence            9999998864   5778888899999999999999753210        00001223567899999 99999998632  


Q ss_pred             -CCCCCCc--eeeEEEECCEEEEEccccCCCCcccceeEecceEEEecC
Q 016328          326 -PKPDSHI--EFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN  371 (391)
Q Consensus       326 -~~~~~~~--~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~  371 (391)
                       +.||.++  .++.+.-+++|||+||.+......      .|+|+|+..
T Consensus       297 ~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~------~~~~~~~~~  339 (341)
T PLN02153        297 PAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERT------DDLYFYAVN  339 (341)
T ss_pred             CCCCCccccccccccCCcceEEEEcCcCCCCccc------cceEEEecc
Confidence             4445443  333233345899999998764332      599999764

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=9.3e-39  Score=311.68  Aligned_cols=317  Identities=17%  Similarity=0.244  Sum_probs=237.3

Q ss_pred             hheecCEEEEecCCCCcccceeEeee--cCCC----Ce-eecCC----CCCCCCceeeEeecC-ccccccc-----cccc
Q 016328           29 FALVADFFWASSSKFTSSYLNIASNW--SPYH----NS-IILPN----NGPQKGENIGVKTKK-DVVPKRI-----LPAT   91 (391)
Q Consensus        29 ~~~~~~~ly~~GG~~~~~~~~~~~~~--d~~~----~~-~~lp~----~~~r~~~g~~~~~~~-~~~~~~~-----~~~~   91 (391)
                      +++.+++|+.|+|+.+.. ++.+..|  +|.+    ++ ..+.+    +.||..++.+.+... +..++..     ..+.
T Consensus       116 f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~  194 (470)
T PLN02193        116 FVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKH  194 (470)
T ss_pred             EEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCc
Confidence            344689999999976543 6666556  7655    44 44333    568988888777655 6666542     3357


Q ss_pred             ccccccccCceEEccCC---CC-CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC-CCCcceEE
Q 016328           92 FQDLPAPELKWEKMKAA---PV-PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLG  166 (391)
Q Consensus        92 ~~~~d~~~~~W~~~~~~---p~-~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~~~r~~~~  166 (391)
                      +++||+.+++|+.++++   |. +|.+|+++.++++|||+||.+.... ++++++||+.+++|+.+++++. |.+|..|+
T Consensus       195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~-~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~  273 (470)
T PLN02193        195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQ-YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS  273 (470)
T ss_pred             EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCC-CccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence            99999999999988653   43 3568889999999999999876543 6789999999999999988732 34789999


Q ss_pred             EEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC---CCCCCCCceEEEECCEEEEEccCCCCccCCCccceE
Q 016328          167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      +++.+++|||+||.+....   ++++++||+.+++|+.+++   ++.+|..|++++++++||++||..+.. .       
T Consensus       274 ~~~~~~~iYv~GG~~~~~~---~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~-------  342 (470)
T PLN02193        274 MAADEENVYVFGGVSATAR---LKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-V-------  342 (470)
T ss_pred             EEEECCEEEEECCCCCCCC---cceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-c-------
Confidence            9999999999999876543   6889999999999999874   678899999999999999999975421 1       


Q ss_pred             eeeecCCcccCCceeecCC---CCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcE
Q 016328          244 LAVKDGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW  319 (391)
Q Consensus       244 ~~~~~~d~~~~~W~~~~~~---p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W  319 (391)
                      ..++.||+++++|+.++++   |.+|..+++++++++|||+||.......        .......+.++++.|| .+++|
T Consensus       343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~--------~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPL--------AHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccc--------cccCccceeccEEEEEcCcCEE
Confidence            2345557999999988654   7778888999999999999998642110        0011123567899999 99999


Q ss_pred             EEcCCC------CCCCCCceeeEEEEC--CEEEEEccccCCCCcccceeEecceEEEecCc
Q 016328          320 KVLPSM------PKPDSHIEFAWVLVN--NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT  372 (391)
Q Consensus       320 ~~v~~~------~~~~~~~~~~~~~~~--~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~  372 (391)
                      +.++.+      |.+|..++++++.++  +.|+++||.++....      .+|+|+|++++
T Consensus       415 ~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~------~~D~~~~~~~~  469 (470)
T PLN02193        415 ERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDR------FDDLFFYGIDS  469 (470)
T ss_pred             EEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcccc------ccceEEEecCC
Confidence            999754      344544433233333  459999999865433      36999998875

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=6.2e-39  Score=302.02  Aligned_cols=267  Identities=19%  Similarity=0.277  Sum_probs=200.4

Q ss_pred             cccCceEEccC----CCCCccCceEEEECCEEEEEeccCCC-CCCcceeEEEECCCCCeeeCCCCCC-CCC-cceEEEEE
Q 016328           97 APELKWEKMKA----APVPRLDGAAIQIKNLLYVFAGYGSI-DYVHSHVDIYNFTDNTWGGRFDMPR-EMA-HSHLGMVT  169 (391)
Q Consensus        97 ~~~~~W~~~~~----~p~~r~~~~~~~~~~~vyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~-~~~-r~~~~~~~  169 (391)
                      +...+|.++..    +|.||..|++++++++|||+||.... ....+++++||+.+++|+.+++++. |.. +..+++++
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~   83 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA   83 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence            35678999976    79999999999999999999998643 3345789999999999999887653 322 34688999


Q ss_pred             eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCC-----CCCCCCceEEEECCEEEEEccCCCCccCCCccceEe
Q 016328          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL-----PVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ++++||||||.+....   .+++++||+++++|+.+++|     |.+|..|++++.+++|||+||............+ .
T Consensus        84 ~~~~iyv~GG~~~~~~---~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~  159 (341)
T PLN02153         84 VGTKLYIFGGRDEKRE---FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF-R  159 (341)
T ss_pred             ECCEEEEECCCCCCCc---cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc-c
Confidence            9999999999876543   68999999999999999877     7899999999999999999998643222111112 2


Q ss_pred             eeecCCcccCCceeecCCC---CCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEE
Q 016328          245 AVKDGKPLEKEWRTEIPIP---RGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWK  320 (391)
Q Consensus       245 ~~~~~d~~~~~W~~~~~~p---~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~  320 (391)
                      .++.||+++++|+.++++.   ..|.++++++++++|||+||........         .......+++++|| .+++|+
T Consensus       160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~g---------G~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPG---------GKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccC---------CccceecCceEEEEcCCCcEE
Confidence            3566789999999987653   6777788899999999999975321000         00011256799999 999999


Q ss_pred             EcCC---CCCCCCCceeeEEEECCEEEEEccccCCCC--cccceeEecceEEEecCccccccC
Q 016328          321 VLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHP--TTKKMVLVGEIFQFNLNTLVSAFY  378 (391)
Q Consensus       321 ~v~~---~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~l  378 (391)
                      +++.   +|.+|.  .+++++++++|||+||......  ........+++|+||+++.+|..+
T Consensus       231 ~~~~~g~~P~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~  291 (341)
T PLN02153        231 EVETTGAKPSARS--VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL  291 (341)
T ss_pred             eccccCCCCCCcc--eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence            9975   455554  4667899999999999753210  001112346999999988887644

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=7.5e-39  Score=302.41  Aligned_cols=286  Identities=18%  Similarity=0.214  Sum_probs=204.1

Q ss_pred             HHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccc--cccCceE
Q 016328           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLP--APELKWE  103 (391)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d--~~~~~W~  103 (391)
                      .+++|++++.||++||...    +                                         .+++||  +.+++|.
T Consensus        10 ~~~~~~~~~~vyv~GG~~~----~-----------------------------------------~~~~~d~~~~~~~W~   44 (346)
T TIGR03547        10 NGTGAIIGDKVYVGLGSAG----T-----------------------------------------SWYKLDLKKPSKGWQ   44 (346)
T ss_pred             CceEEEECCEEEEEccccC----C-----------------------------------------eeEEEECCCCCCCce
Confidence            4667899999999999532    1                                         233444  3567999


Q ss_pred             EccCCC-CCccCceEEEECCEEEEEeccCCCC-----CCcceeEEEECCCCCeeeCCCCCCCCCcceEEEE-EeCCEEEE
Q 016328          104 KMKAAP-VPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV-TDGRYIYV  176 (391)
Q Consensus       104 ~~~~~p-~~r~~~~~~~~~~~vyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~-~~~~~iyv  176 (391)
                      ++++|| .+|..+++++++++|||+||.....     ..++++|+||+.+++|+.++. +.|.+|..++++ +.+++||+
T Consensus        45 ~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYv  123 (346)
T TIGR03547        45 KIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYF  123 (346)
T ss_pred             ECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEE
Confidence            999999 6899999999999999999985422     246789999999999999873 233367667666 78999999


Q ss_pred             EeCccCCCC-------------------------------CCCcceeEEEeCCCCceEECCCCCC-CCCCceEEEECCEE
Q 016328          177 VTGQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLPV-PRYAPATQLWRGRL  224 (391)
Q Consensus       177 ~GG~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~i  224 (391)
                      +||.+....                               ....+++++|||.+++|+.+++||. +|..+++++++++|
T Consensus       124 iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~i  203 (346)
T TIGR03547       124 TGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKL  203 (346)
T ss_pred             EcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEE
Confidence            999864210                               0013789999999999999999996 78999999999999


Q ss_pred             EEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCC-------cceeEEEECCEEEEEeCCCCCCCcCCC-CCc
Q 016328          225 HVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG-------PHRACVVVDDRLLVIGGQEGDFMAKPG-SPI  296 (391)
Q Consensus       225 yv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~-------~~~~~~~~~~~i~v~GG~~~~~~~~~~-~~~  296 (391)
                      ||+||...... ...+   ..++++|+.+++|+.+++||.++       ..+++++++++|||+||.+........ .-.
T Consensus       204 yv~GG~~~~~~-~~~~---~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~  279 (346)
T TIGR03547       204 LLINGEIKPGL-RTAE---VKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGK  279 (346)
T ss_pred             EEEeeeeCCCc-cchh---eEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCC
Confidence            99999754321 1122   22355678899999999987543       344577899999999998632100000 000


Q ss_pred             cccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEec
Q 016328          297 FKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNL  370 (391)
Q Consensus       297 ~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~  370 (391)
                      .. ..........+.+|| ++++|+.+++||.+|..  +++++++++|||+||.+..+..      .++|+.+..
T Consensus       280 ~~-~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~--~~~~~~~~~iyv~GG~~~~~~~------~~~v~~~~~  345 (346)
T TIGR03547       280 LY-AHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAY--GVSVSWNNGVLLIGGENSGGKA------VTDVYLLSW  345 (346)
T ss_pred             cc-ccCCCCceeEeeEEEecCCcccccCCCCCCcee--eEEEEcCCEEEEEeccCCCCCE------eeeEEEEEe
Confidence            00 000000012355666 78999999999988754  4568899999999999765533      357876653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-39  Score=321.24  Aligned_cols=262  Identities=11%  Similarity=0.141  Sum_probs=215.1

Q ss_pred             EEEEecCCCCcccceeEeeecCCCCe-eecCC-CCCCCCceeeEeecC-ccccccc----ccccccccccccCceEEccC
Q 016328           35 FFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTKK-DVVPKRI----LPATFQDLPAPELKWEKMKA  107 (391)
Q Consensus        35 ~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~-~~~r~~~g~~~~~~~-~~~~~~~----~~~~~~~~d~~~~~W~~~~~  107 (391)
                      .+++.||... .....+++|||.+++ ..+++ +.+|..++++++.+. |..+|..    ..+.+++||+.+++|..+++
T Consensus       259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~  337 (557)
T PHA02713        259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP  337 (557)
T ss_pred             EEEEecCccc-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC
Confidence            4566665322 123468999999999 77776 667777777777666 6666632    23478999999999999999


Q ss_pred             CCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCC--
Q 016328          108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC--  185 (391)
Q Consensus       108 ~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~--  185 (391)
                      ||.+|..+++++++++|||+||.++... ++++++|||.+++|+.+++||.  +|..+++++++++|||+||.++...  
T Consensus       338 m~~~R~~~~~~~~~g~IYviGG~~~~~~-~~sve~Ydp~~~~W~~~~~mp~--~r~~~~~~~~~g~IYviGG~~~~~~~~  414 (557)
T PHA02713        338 MIKNRCRFSLAVIDDTIYAIGGQNGTNV-ERTIECYTMGDDKWKMLPDMPI--ALSSYGMCVLDQYIYIIGGRTEHIDYT  414 (557)
T ss_pred             CcchhhceeEEEECCEEEEECCcCCCCC-CceEEEEECCCCeEEECCCCCc--ccccccEEEECCEEEEEeCCCcccccc
Confidence            9999999999999999999999875543 5779999999999999999998  7888899999999999999864321  


Q ss_pred             -------------CCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc
Q 016328          186 -------------RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL  252 (391)
Q Consensus       186 -------------~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~  252 (391)
                                   ....+.+++|||++++|+.+++|+.+|..+++++++++|||+||.++...      ....++.|||+
T Consensus       415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~  488 (557)
T PHA02713        415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTN  488 (557)
T ss_pred             cccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc------cceeEEEecCC
Confidence                         01257899999999999999999999999999999999999999764221      11235677899


Q ss_pred             c-CCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC
Q 016328          253 E-KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP  326 (391)
Q Consensus       253 ~-~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~  326 (391)
                      + ++|+.+++||..|..+++++++++||++||.++.                    ..+.+|| .+++|+.+++..
T Consensus       489 ~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--------------------~~~e~yd~~~~~W~~~~~~~  544 (557)
T PHA02713        489 TYNGWELITTTESRLSALHTILHDNTIMMLHCYESY--------------------MLQDTFNVYTYEWNHICHQH  544 (557)
T ss_pred             CCCCeeEccccCcccccceeEEECCEEEEEeeecce--------------------eehhhcCcccccccchhhhc
Confidence            9 8999999999999999999999999999998742                    1478999 999999998643

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=5.1e-38  Score=306.47  Aligned_cols=256  Identities=23%  Similarity=0.306  Sum_probs=200.6

Q ss_pred             ccccccc----CceEEccC---CCCCccCceEEEECCEEEEEeccCCCC-CCcceeEEEECCCCCeeeCCCCC-CCC-Cc
Q 016328           93 QDLPAPE----LKWEKMKA---APVPRLDGAAIQIKNLLYVFAGYGSID-YVHSHVDIYNFTDNTWGGRFDMP-REM-AH  162 (391)
Q Consensus        93 ~~~d~~~----~~W~~~~~---~p~~r~~~~~~~~~~~vyv~GG~~~~~-~~~~~~~~yd~~~~~W~~~~~~p-~~~-~r  162 (391)
                      +.+++.+    ++|.++.+   +|.||.+|+++.++++|||+||..... ...+++++||+.+++|+.++.+. .|. +|
T Consensus       140 y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~  219 (470)
T PLN02193        140 YISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSC  219 (470)
T ss_pred             EEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcc
Confidence            3446544    79999876   588999999999999999999986433 34467999999999999876542 222 35


Q ss_pred             ceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCC---CCCCCCceEEEECCEEEEEccCCCCccCCCc
Q 016328          163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL---PVPRYAPATQLWRGRLHVMGGSGENRYTPEV  239 (391)
Q Consensus       163 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  239 (391)
                      ..++++.++++||||||.+....   ++++++||+.+++|+.++++   |.+|..|++++++++|||+||........+ 
T Consensus       220 ~~~~~v~~~~~lYvfGG~~~~~~---~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~-  295 (470)
T PLN02193        220 LGVRMVSIGSTLYVFGGRDASRQ---YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKT-  295 (470)
T ss_pred             cceEEEEECCEEEEECCCCCCCC---CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcce-
Confidence            67889999999999999876543   78999999999999999887   889999999999999999999865433322 


Q ss_pred             cceEeeeecCCcccCCceeecC---CCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-C
Q 016328          240 DHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D  315 (391)
Q Consensus       240 ~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~  315 (391)
                            ++.||+.+++|+.+++   +|..|..+++++++++||++||.++.                  ..+++++|| .
T Consensus       296 ------~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD~~  351 (470)
T PLN02193        296 ------LDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYDPV  351 (470)
T ss_pred             ------EEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEECC
Confidence                  3455699999998764   56677778899999999999997543                  246799999 9


Q ss_pred             cCcEEEcCCC---CCCCCCceeeEEEECCEEEEEccccCCCCc--ccceeEecceEEEecCccccccC
Q 016328          316 EMKWKVLPSM---PKPDSHIEFAWVLVNNSIVIVGGTTEKHPT--TKKMVLVGEIFQFNLNTLVSAFY  378 (391)
Q Consensus       316 ~~~W~~v~~~---~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~--~~~~~~~~~v~~~d~~~~~~~~l  378 (391)
                      +++|+.++++   |.+|.  .++++.++++|||+||.......  .......+++|+||+++++|..+
T Consensus       352 t~~W~~~~~~g~~P~~R~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~  417 (470)
T PLN02193        352 QDKWTQVETFGVRPSERS--VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL  417 (470)
T ss_pred             CCEEEEeccCCCCCCCcc--eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence            9999999765   55554  45668999999999998652211  11113456899999998887754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=3.2e-38  Score=295.08  Aligned_cols=283  Identities=20%  Similarity=0.272  Sum_probs=204.2

Q ss_pred             HHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccc-cc-cCc
Q 016328           24 VMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLP-AP-ELK  101 (391)
Q Consensus        24 ~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d-~~-~~~  101 (391)
                      ++.|.+++++++||++||.+....        |      +.                 ..+.....++++.|+ +. +.+
T Consensus         4 ~~g~~~~~~~~~l~v~GG~~~~~~--------~------~~-----------------~~g~~~~~~~v~~~~~~~~~~~   52 (323)
T TIGR03548         4 VAGCYAGIIGDYILVAGGCNFPED--------P------LA-----------------EGGKKKNYKGIYIAKDENSNLK   52 (323)
T ss_pred             eeeEeeeEECCEEEEeeccCCCCC--------c------hh-----------------hCCcEEeeeeeEEEecCCCcee
Confidence            456889999999999999654221        0      00                 001111222555553 33 237


Q ss_pred             eEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCe----eeCCCCCCCCCcceEEEEEeCCEEEEE
Q 016328          102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW----GGRFDMPREMAHSHLGMVTDGRYIYVV  177 (391)
Q Consensus       102 W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~~~r~~~~~~~~~~~iyv~  177 (391)
                      |..+++||.+|..+++++++++||++||.+.... ++++++||+.+++|    +.+++||.  +|..+++++++++|||+
T Consensus        53 W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~--~~~~~~~~~~~~~iYv~  129 (323)
T TIGR03548        53 WVKDGQLPYEAAYGASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPF--TFENGSACYKDGTLYVG  129 (323)
T ss_pred             EEEcccCCccccceEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCc--CccCceEEEECCEEEEE
Confidence            9999999999999999999999999999876544 57899999999998    67888887  67788999999999999


Q ss_pred             eCccCCCCCCCcceeEEEeCCCCceEECCCCC-CCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCc
Q 016328          178 TGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEW  256 (391)
Q Consensus       178 GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W  256 (391)
                      ||.....   ..+++++||+++++|+.+++|| .+|..|++++++++|||+||.+....        ..++.||+++++|
T Consensus       130 GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~--------~~~~~yd~~~~~W  198 (323)
T TIGR03548       130 GGNRNGK---PSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAY--------TDGYKYSPKKNQW  198 (323)
T ss_pred             eCcCCCc---cCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccc--------cceEEEecCCCee
Confidence            9975433   2789999999999999999988 58999999999999999999764221        1235667999999


Q ss_pred             eeecCC-----CCCCccee-EEEECCEEEEEeCCCCCCCcC----------CCCCccc-----cCcCCceecCcEEEEc-
Q 016328          257 RTEIPI-----PRGGPHRA-CVVVDDRLLVIGGQEGDFMAK----------PGSPIFK-----CSRRNEVVYDDVYMLD-  314 (391)
Q Consensus       257 ~~~~~~-----p~~~~~~~-~~~~~~~i~v~GG~~~~~~~~----------~~~~~~~-----~~~~~~~~~~~v~~~d-  314 (391)
                      +.++++     |+.+..++ +++.+++|||+||.+.....+          ...+...     .....-.+.+++++|| 
T Consensus       199 ~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  278 (323)
T TIGR03548       199 QKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNV  278 (323)
T ss_pred             EECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEEC
Confidence            998765     33333333 345579999999986421000          0000000     0000011246799999 


Q ss_pred             CcCcEEEcCCCC-CCCCCceeeEEEECCEEEEEccccCCC
Q 016328          315 DEMKWKVLPSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKH  353 (391)
Q Consensus       315 ~~~~W~~v~~~~-~~~~~~~~~~~~~~~~l~i~GG~~~~~  353 (391)
                      .+++|+.++++| .+|.  .++++.++++||++||....+
T Consensus       279 ~~~~W~~~~~~p~~~r~--~~~~~~~~~~iyv~GG~~~pg  316 (323)
T TIGR03548       279 RTGKWKSIGNSPFFARC--GAALLLTGNNIFSINGELKPG  316 (323)
T ss_pred             CCCeeeEcccccccccC--chheEEECCEEEEEeccccCC
Confidence            999999999876 3444  456789999999999986544

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=3.2e-37  Score=293.54  Aligned_cols=261  Identities=18%  Similarity=0.187  Sum_probs=187.4

Q ss_pred             cCceEEccCCC-CCccCceEEEECCEEEEEeccCCC-----CCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eC
Q 016328           99 ELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSI-----DYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DG  171 (391)
Q Consensus        99 ~~~W~~~~~~p-~~r~~~~~~~~~~~vyv~GG~~~~-----~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~  171 (391)
                      +++|.+++++| .+|.+++++.++++|||+||....     ...++++++||+.+++|+.++++ .|.++..|++++ .+
T Consensus        61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~  139 (376)
T PRK14131         61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHN  139 (376)
T ss_pred             CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeC
Confidence            57899999998 589999999999999999998641     12457899999999999999853 233666676666 89


Q ss_pred             CEEEEEeCccCCCC-------------------------------CCCcceeEEEeCCCCceEECCCCCC-CCCCceEEE
Q 016328          172 RYIYVVTGQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLPV-PRYAPATQL  219 (391)
Q Consensus       172 ~~iyv~GG~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~  219 (391)
                      ++|||+||.+....                               ....+++++||+.+++|+.++++|. +|..++++.
T Consensus       140 ~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~  219 (376)
T PRK14131        140 GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVI  219 (376)
T ss_pred             CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEE
Confidence            99999999753200                               0014789999999999999999996 788899999


Q ss_pred             ECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCc--------ceeEEEECCEEEEEeCCCCCCCcC
Q 016328          220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP--------HRACVVVDDRLLVIGGQEGDFMAK  291 (391)
Q Consensus       220 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~--------~~~~~~~~~~i~v~GG~~~~~~~~  291 (391)
                      ++++|||+||...... ...+.|   .+++|+++++|+.+++||.++.        ++.+++++++|||+||.+......
T Consensus       220 ~~~~iYv~GG~~~~~~-~~~~~~---~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~  295 (376)
T PRK14131        220 KGNKLWLINGEIKPGL-RTDAVK---QGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARE  295 (376)
T ss_pred             ECCEEEEEeeeECCCc-CChhhe---EEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChh
Confidence            9999999999743221 223333   3456789999999998876542        233578899999999986421000


Q ss_pred             CC-CCccccCc-CCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEE
Q 016328          292 PG-SPIFKCSR-RNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF  368 (391)
Q Consensus       292 ~~-~~~~~~~~-~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~  368 (391)
                      .. .-...... ...+  ..++.|| ++++|+.+++||.+|..  ++++.++++|||+||.......      .+++++|
T Consensus       296 ~~~~~~~~~~~~~~~~--~~~e~yd~~~~~W~~~~~lp~~r~~--~~av~~~~~iyv~GG~~~~~~~------~~~v~~~  365 (376)
T PRK14131        296 NYQNGKLYAHEGLKKS--WSDEIYALVNGKWQKVGELPQGLAY--GVSVSWNNGVLLIGGETAGGKA------VSDVTLL  365 (376)
T ss_pred             hhhcCCcccccCCcce--eehheEEecCCcccccCcCCCCccc--eEEEEeCCEEEEEcCCCCCCcE------eeeEEEE
Confidence            00 00000000 0001  1245566 88999999999998865  4568899999999998654422      3589888


Q ss_pred             ecCccc
Q 016328          369 NLNTLV  374 (391)
Q Consensus       369 d~~~~~  374 (391)
                      ++....
T Consensus       366 ~~~~~~  371 (376)
T PRK14131        366 SWDGKK  371 (376)
T ss_pred             EEcCCE
Confidence            876544

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=4.6e-38  Score=266.54  Aligned_cols=274  Identities=19%  Similarity=0.340  Sum_probs=220.1

Q ss_pred             CceehhHHHHHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccc
Q 016328           15 PARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQD   94 (391)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~   94 (391)
                      ++|+       .||++.++++||-|||.-....      |                            ...+.+  ++..
T Consensus        12 PrRV-------NHAavaVG~riYSFGGYCsGed------y----------------------------~~~~pi--DVH~   48 (392)
T KOG4693|consen   12 PRRV-------NHAAVAVGSRIYSFGGYCSGED------Y----------------------------DAKDPI--DVHV   48 (392)
T ss_pred             cccc-------cceeeeecceEEecCCcccccc------c----------------------------ccCCcc--eeEE
Confidence            5677       8999999999999999553321      1                            001111  5666


Q ss_pred             cccccCceEEccC-------------CCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeC---CCCCC
Q 016328           95 LPAPELKWEKMKA-------------APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR---FDMPR  158 (391)
Q Consensus        95 ~d~~~~~W~~~~~-------------~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~  158 (391)
                      +|..+.+|+++++             .|..|.+|+++.+++++||.||.++....-+-+++||+++++|++.   ..+|.
T Consensus        49 lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg  128 (392)
T KOG4693|consen   49 LNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG  128 (392)
T ss_pred             eeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCC
Confidence            6777777777654             3667999999999999999999988776678899999999999984   24555


Q ss_pred             CCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEECCEEEEEccCCCC--
Q 016328          159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGEN--  233 (391)
Q Consensus       159 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~--  233 (391)
                        +|.+|+++++++.+|||||+..... ...++++.+|..|.+|+.+.   ..|.=|..|+++++++.+|||||+.+.  
T Consensus       129 --aRDGHsAcV~gn~MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~g  205 (392)
T KOG4693|consen  129 --ARDGHSACVWGNQMYIFGGYEEDAQ-RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESG  205 (392)
T ss_pred             --ccCCceeeEECcEEEEecChHHHHH-hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCC
Confidence              8999999999999999999965532 23789999999999999986   345568899999999999999998653  


Q ss_pred             ccCCCccceEeeeecCCcccCCceeecC---CCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcE
Q 016328          234 RYTPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV  310 (391)
Q Consensus       234 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (391)
                      .+....+.|.-.+..+|.++..|...++   .|.+|..|++.+.+++||+|||+++.-               ....+|+
T Consensus       206 pfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l---------------n~HfndL  270 (392)
T KOG4693|consen  206 PFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL---------------NVHFNDL  270 (392)
T ss_pred             CccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhh---------------hhhhcce
Confidence            2444567777777788999999998754   588999999999999999999998642               2357899


Q ss_pred             EEEc-CcCcEEEcCC---CCCCCCCceeeEEEECCEEEEEccccC
Q 016328          311 YMLD-DEMKWKVLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTE  351 (391)
Q Consensus       311 ~~~d-~~~~W~~v~~---~~~~~~~~~~~~~~~~~~l~i~GG~~~  351 (391)
                      |+|| .+..|+.|..   -|.+|.+.  ++++.++++|+|||...
T Consensus       271 y~FdP~t~~W~~I~~~Gk~P~aRRRq--C~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  271 YCFDPKTSMWSVISVRGKYPSARRRQ--CSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             eecccccchheeeeccCCCCCcccce--eEEEECCEEEEecCCCC
Confidence            9999 8999999953   57777774  55899999999999875

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=6.1e-37  Score=305.68  Aligned_cols=263  Identities=20%  Similarity=0.268  Sum_probs=213.1

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      .+..|++.+++|..++++|. +..+++++++++|||+||.+......+++++||+.+++|..+++||.  +|..++++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~R~~~~~~~~  341 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY--PRKNPGVTVF  341 (534)
T ss_pred             eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--ccccceEEEE
Confidence            35578888889998877664 44578899999999999998766666789999999999999999987  6889999999


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCC
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d  250 (391)
                      +++||++||.+...   ..+++++||+.+++|+.+++||.+|..|++++++++|||+||.......      ...++.||
T Consensus       342 ~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~------~~~v~~yd  412 (534)
T PHA03098        342 NNRIYVIGGIYNSI---SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL------LKTVECFS  412 (534)
T ss_pred             CCEEEEEeCCCCCE---ecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc------cceEEEEe
Confidence            99999999987433   2788999999999999999999999999999999999999997432111      12345567


Q ss_pred             cccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCC
Q 016328          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD  329 (391)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~  329 (391)
                      +.+++|+.++++|.++.++++++.+++||++||.+....              ....++++.|| .+++|+.+++++.+|
T Consensus       413 ~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~~~~W~~~~~~~~~r  478 (534)
T PHA03098        413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN--------------IKVYNIVESYNPVTNKWTELSSLNFPR  478 (534)
T ss_pred             CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC--------------CcccceEEEecCCCCceeeCCCCCccc
Confidence            999999999999999988999999999999999864321              00234599999 899999999998887


Q ss_pred             CCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccccCCCccccccee
Q 016328          330 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHV  388 (391)
Q Consensus       330 ~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~lp~~~~~~~~~  388 (391)
                      ..+  +++..+++||++||.+....       .+++++||+++.+|..++..-..-+.+
T Consensus       479 ~~~--~~~~~~~~iyv~GG~~~~~~-------~~~v~~yd~~~~~W~~~~~~p~~~~~~  528 (534)
T PHA03098        479 INA--SLCIFNNKIYVVGGDKYEYY-------INEIEVYDDKTNTWTLFCKFPKVIGSL  528 (534)
T ss_pred             ccc--eEEEECCEEEEEcCCcCCcc-------cceeEEEeCCCCEEEecCCCcccccce
Confidence            654  55778999999999875432       247999999988887666543333433

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=2.4e-36  Score=301.38  Aligned_cols=237  Identities=16%  Similarity=0.312  Sum_probs=199.0

Q ss_pred             HHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEcc
Q 016328           27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMK  106 (391)
Q Consensus        27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~  106 (391)
                      |+++++++.||++||......                                        ..+.++.||+.+++|..++
T Consensus       288 ~~~~~~~~~lyv~GG~~~~~~----------------------------------------~~~~v~~yd~~~~~W~~~~  327 (534)
T PHA03098        288 FGSVVLNNVIYFIGGMNKNNL----------------------------------------SVNSVVSYDTKTKSWNKVP  327 (534)
T ss_pred             ceEEEECCEEEEECCCcCCCC----------------------------------------eeccEEEEeCCCCeeeECC
Confidence            588899999999999654221                                        1236788899999999999


Q ss_pred             CCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCC
Q 016328          107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCR  186 (391)
Q Consensus       107 ~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~  186 (391)
                      +||.+|..|+++.++++|||+||.+... .++++++||+.+++|+.+++||.  +|..++++.++++|||+||...... 
T Consensus       328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~--~r~~~~~~~~~~~iYv~GG~~~~~~-  403 (534)
T PHA03098        328 ELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIF--PRYNPCVVNVNNLIYVIGGISKNDE-  403 (534)
T ss_pred             CCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCc--CCccceEEEECCEEEEECCcCCCCc-
Confidence            9999999999999999999999987443 46789999999999999999988  7889999999999999999754432 


Q ss_pred             CCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCC
Q 016328          187 GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG  266 (391)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~  266 (391)
                       .++++++||+.+++|+.++++|.+|..|++++++++|||+||......   ...++ .++.||+.+++|+.++++|.++
T Consensus       404 -~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~-~v~~yd~~~~~W~~~~~~~~~r  478 (534)
T PHA03098        404 -LLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN---IKVYN-IVESYNPVTNKWTELSSLNFPR  478 (534)
T ss_pred             -ccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC---Ccccc-eEEEecCCCCceeeCCCCCccc
Confidence             268999999999999999999999999999999999999999764321   11222 2677889999999999998888


Q ss_pred             cceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCC
Q 016328          267 PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD  329 (391)
Q Consensus       267 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~  329 (391)
                      ..+++++++++||++||.+...                 ..++++.|| .+++|+.++.+|...
T Consensus       479 ~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~~  525 (534)
T PHA03098        479 INASLCIFNNKIYVVGGDKYEY-----------------YINEIEVYDDKTNTWTLFCKFPKVI  525 (534)
T ss_pred             ccceEEEECCEEEEEcCCcCCc-----------------ccceeEEEeCCCCEEEecCCCcccc
Confidence            8889999999999999987432                 256799999 999999998766543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=5e-36  Score=283.19  Aligned_cols=264  Identities=19%  Similarity=0.306  Sum_probs=195.7

Q ss_pred             ccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEEC--CCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccC
Q 016328          105 MKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNF--TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYG  182 (391)
Q Consensus       105 ~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~  182 (391)
                      +++||.+|..+++++++++|||+||...     +++++||+  .+++|..+++||.. +|..+++++++++|||+||...
T Consensus         1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~   74 (346)
T TIGR03547         1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGK   74 (346)
T ss_pred             CCCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCC
Confidence            4789999999999899999999999742     46899996  57899999999842 6888999999999999999854


Q ss_pred             CC---CCCCcceeEEEeCCCCceEECC-CCCCCCCCceEE-EECCEEEEEccCCCCcc---CCCc---------------
Q 016328          183 PQ---CRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQ-LWRGRLHVMGGSGENRY---TPEV---------------  239 (391)
Q Consensus       183 ~~---~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~---~~~~---------------  239 (391)
                      ..   ....++++|+||+.+++|+.++ ++|.+|..++++ +++++||++||.....+   ....               
T Consensus        75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T TIGR03547        75 ANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA  154 (346)
T ss_pred             CCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence            22   1113688999999999999997 567778778776 79999999999863210   0000               


Q ss_pred             ---------cceEeeeecCCcccCCceeecCCCC-CCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCc
Q 016328          240 ---------DHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  309 (391)
Q Consensus       240 ---------~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (391)
                               ..+...++.|||.+++|+.+++||. .+.++++++++++|||+||......                ...+
T Consensus       155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~----------------~~~~  218 (346)
T TIGR03547       155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL----------------RTAE  218 (346)
T ss_pred             HHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc----------------cchh
Confidence                     0112346778899999999999985 5777888999999999999853210                1223


Q ss_pred             E--EEEc-CcCcEEEcCCCCCCCC-----CceeeEEEECCEEEEEccccCCCCc----------c--cceeEecceEEEe
Q 016328          310 V--YMLD-DEMKWKVLPSMPKPDS-----HIEFAWVLVNNSIVIVGGTTEKHPT----------T--KKMVLVGEIFQFN  369 (391)
Q Consensus       310 v--~~~d-~~~~W~~v~~~~~~~~-----~~~~~~~~~~~~l~i~GG~~~~~~~----------~--~~~~~~~~v~~~d  369 (391)
                      +  |+|| .+++|+.+++||.+|.     +.++++++++++|||+||.+.....          .  .......++|.++
T Consensus       219 ~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~  298 (346)
T TIGR03547       219 VKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD  298 (346)
T ss_pred             eEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec
Confidence            4  5555 6789999999988763     2345567899999999998632110          0  0001234677666


Q ss_pred             cCccc-cccCCCcccccceeec
Q 016328          370 LNTLV-SAFYPFNILCHPHVKC  390 (391)
Q Consensus       370 ~~~~~-~~~lp~~~~~~~~~~~  390 (391)
                      .++|+ ...||.++..|+++.+
T Consensus       299 ~~~W~~~~~lp~~~~~~~~~~~  320 (346)
T TIGR03547       299 NGKWSKVGKLPQGLAYGVSVSW  320 (346)
T ss_pred             CCcccccCCCCCCceeeEEEEc
Confidence            67777 6789999888877654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=4e-36  Score=293.93  Aligned_cols=190  Identities=19%  Similarity=0.306  Sum_probs=167.1

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      .+++||+.+++|..+++||.+|..++++.++++||++||.+..    +++++||+.+++|+.+++||.  +|..++++++
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~--~r~~~~~~~~  361 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLK--PRCNPAVASI  361 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCC--CCcccEEEEE
Confidence            5667788888999999999999999999999999999998532    469999999999999999998  7888999999


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCC
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d  250 (391)
                      +++|||+||.++.     .+.+++|||++++|+.+++|+.+|..+++++++++|||+||.        .+       .||
T Consensus       362 ~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e-------~yd  421 (480)
T PHA02790        362 NNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AE-------FYC  421 (480)
T ss_pred             CCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eE-------Eec
Confidence            9999999997542     367899999999999999999999999999999999999983        22       346


Q ss_pred             cccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC
Q 016328          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP  323 (391)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~  323 (391)
                      |++++|+.+++|+.+|..+++++++++||++||.++..                 ..+.+++|| .+++|+...
T Consensus       422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-----------------~~~~ve~Yd~~~~~W~~~~  478 (480)
T PHA02790        422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-----------------YIDTIEVYNNRTYSWNIWD  478 (480)
T ss_pred             CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-----------------ccceEEEEECCCCeEEecC
Confidence            89999999999999999999999999999999986432                 235689999 999998754

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=2.8e-35  Score=287.96  Aligned_cols=212  Identities=18%  Similarity=0.301  Sum_probs=179.1

Q ss_pred             EEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEe
Q 016328          117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD  196 (391)
Q Consensus       117 ~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (391)
                      ++.+++.||++||.+... ..+++++||+.+++|..+++|+.  +|..+++++.+++||++||.++      .+++++||
T Consensus       267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~m~~--~r~~~~~v~~~~~iYviGG~~~------~~sve~yd  337 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPPMNS--PRLYASGVPANNKLYVVGGLPN------PTSVERWF  337 (480)
T ss_pred             eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCCCCc--hhhcceEEEECCEEEEECCcCC------CCceEEEE
Confidence            455899999999986543 35679999999999999999988  7888899999999999999753      35689999


Q ss_pred             CCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECC
Q 016328          197 TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD  276 (391)
Q Consensus       197 ~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~  276 (391)
                      |.+++|+.+++||.+|..+++++++++||++||....  ...       ++.|||.+++|+.+++|+.++..++++++++
T Consensus       338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~-------ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~  408 (480)
T PHA02790        338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTT-------TEYLLPNHDQWQFGPSTYYPHYKSCALVFGR  408 (480)
T ss_pred             CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--Ccc-------EEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence            9999999999999999999999999999999997532  122       3455799999999999999998889999999


Q ss_pred             EEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCc
Q 016328          277 RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT  355 (391)
Q Consensus       277 ~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~  355 (391)
                      +||++||.                         +..|| .+++|+.+++|+.+|..+  ++++++|+||++||++.... 
T Consensus       409 ~IYv~GG~-------------------------~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~~-  460 (480)
T PHA02790        409 RLFLVGRN-------------------------AEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGSY-  460 (480)
T ss_pred             EEEEECCc-------------------------eEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCcc-
Confidence            99999984                         35677 899999999999888764  56899999999999874321 


Q ss_pred             ccceeEecceEEEecCccccccCCC
Q 016328          356 TKKMVLVGEIFQFNLNTLVSAFYPF  380 (391)
Q Consensus       356 ~~~~~~~~~v~~~d~~~~~~~~lp~  380 (391)
                            .+.+++||+++++|..+.+
T Consensus       461 ------~~~ve~Yd~~~~~W~~~~~  479 (480)
T PHA02790        461 ------IDTIEVYNNRTYSWNIWDG  479 (480)
T ss_pred             ------cceEEEEECCCCeEEecCC
Confidence                  1368999998888876654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=1.9e-34  Score=274.51  Aligned_cols=268  Identities=19%  Similarity=0.259  Sum_probs=197.9

Q ss_pred             ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECC--CCCeeeCCCCCCCCCcceEEEEEeCCEEEEEe
Q 016328          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT--DNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT  178 (391)
Q Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~G  178 (391)
                      .++.+++||.||..+++++++++|||+||...     +.+++||+.  +++|..++++|.+ +|..++++.++++|||+|
T Consensus        18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~G   91 (376)
T PRK14131         18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFG   91 (376)
T ss_pred             ecccCCCCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEc
Confidence            57889999999998899999999999999743     348899987  4789999998753 688889999999999999


Q ss_pred             CccCC-C--CCCCcceeEEEeCCCCceEECCC-CCCCCCCceEEE-ECCEEEEEccCCCCccC-----------------
Q 016328          179 GQYGP-Q--CRGPTAHTFVLDTETKKWQDLPP-LPVPRYAPATQL-WRGRLHVMGGSGENRYT-----------------  236 (391)
Q Consensus       179 G~~~~-~--~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~-----------------  236 (391)
                      |.... .  ....++++++||+.+++|+.+++ +|.++..|++++ .+++||++||.....+.                 
T Consensus        92 G~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~  171 (376)
T PRK14131         92 GIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD  171 (376)
T ss_pred             CCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence            98641 1  11236889999999999999985 467777788776 89999999997532100                 


Q ss_pred             --------CC--ccceEeeeecCCcccCCceeecCCCC-CCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCce
Q 016328          237 --------PE--VDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV  305 (391)
Q Consensus       237 --------~~--~~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~  305 (391)
                              ..  ...+...++.|||.+++|+.++++|. .+.+++++.++++|||+||......                
T Consensus       172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~----------------  235 (376)
T PRK14131        172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL----------------  235 (376)
T ss_pred             hhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc----------------
Confidence                    00  00123457788899999999999986 6777888899999999999753310                


Q ss_pred             ecCcE--EEEc-CcCcEEEcCCCCCCCCC------ceeeEEEECCEEEEEccccCCCCc---------c---cceeEecc
Q 016328          306 VYDDV--YMLD-DEMKWKVLPSMPKPDSH------IEFAWVLVNNSIVIVGGTTEKHPT---------T---KKMVLVGE  364 (391)
Q Consensus       306 ~~~~v--~~~d-~~~~W~~v~~~~~~~~~------~~~~~~~~~~~l~i~GG~~~~~~~---------~---~~~~~~~~  364 (391)
                      -..++  ++|| ++++|+.+++||.+|..      +++.+++++++|||+||.+.....         .   .......+
T Consensus       236 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e  315 (376)
T PRK14131        236 RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDE  315 (376)
T ss_pred             CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehh
Confidence            12234  4567 78999999999887632      233357899999999998643210         0   00011235


Q ss_pred             eEEEecCccc-cccCCCcccccceeec
Q 016328          365 IFQFNLNTLV-SAFYPFNILCHPHVKC  390 (391)
Q Consensus       365 v~~~d~~~~~-~~~lp~~~~~~~~~~~  390 (391)
                      +|.++.++|+ ...||.+|..|.+|.+
T Consensus       316 ~yd~~~~~W~~~~~lp~~r~~~~av~~  342 (376)
T PRK14131        316 IYALVNGKWQKVGELPQGLAYGVSVSW  342 (376)
T ss_pred             eEEecCCcccccCcCCCCccceEEEEe
Confidence            5555556666 6789999999887754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=8.1e-34  Score=265.38  Aligned_cols=250  Identities=16%  Similarity=0.164  Sum_probs=187.1

Q ss_pred             CccCceEEEECCEEEEEeccCCCCC---------CcceeEEEE-CCC-CCeeeCCCCCCCCCcceEEEEEeCCEEEEEeC
Q 016328          111 PRLDGAAIQIKNLLYVFAGYGSIDY---------VHSHVDIYN-FTD-NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTG  179 (391)
Q Consensus       111 ~r~~~~~~~~~~~vyv~GG~~~~~~---------~~~~~~~yd-~~~-~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG  179 (391)
                      .++++.++++++.|||+||.+..+.         ..+++++|+ +.. .+|..+++||.  +|..+++++++++||++||
T Consensus         3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~--~r~~~~~~~~~~~lyviGG   80 (323)
T TIGR03548         3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPY--EAAYGASVSVENGIYYIGG   80 (323)
T ss_pred             ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCc--cccceEEEEECCEEEEEcC
Confidence            4678889999999999999865432         235688886 332 27999999988  6766777888999999999


Q ss_pred             ccCCCCCCCcceeEEEeCCCCce----EECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCC
Q 016328          180 QYGPQCRGPTAHTFVLDTETKKW----QDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE  255 (391)
Q Consensus       180 ~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~  255 (391)
                      .++...   ++++++||+.+++|    +.+++||.+|..|++++++++|||+||.......       ..++.||+.+++
T Consensus        81 ~~~~~~---~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~-------~~v~~yd~~~~~  150 (323)
T TIGR03548        81 SNSSER---FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPS-------NKSYLFNLETQE  150 (323)
T ss_pred             CCCCCC---ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccC-------ceEEEEcCCCCC
Confidence            876443   78999999999998    7889999999999999999999999997533222       235666799999


Q ss_pred             ceeecCCCC-CCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC---CCCC
Q 016328          256 WRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP---KPDS  330 (391)
Q Consensus       256 W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~---~~~~  330 (391)
                      |+.++++|. .|..+++++++++|||+||.+..                  ...++++|| .+++|+.+++++   .|+.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~------------------~~~~~~~yd~~~~~W~~~~~~~~~~~p~~  212 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI------------------AYTDGYKYSPKKNQWQKVADPTTDSEPIS  212 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCc------------------cccceEEEecCCCeeEECCCCCCCCCcee
Confidence            999998874 67777888999999999998533                  134578999 899999998763   4444


Q ss_pred             Cce-eeEEEECCEEEEEccccCCCCc-------------------------ccceeEecceEEEecCcccccc---CC-C
Q 016328          331 HIE-FAWVLVNNSIVIVGGTTEKHPT-------------------------TKKMVLVGEIFQFNLNTLVSAF---YP-F  380 (391)
Q Consensus       331 ~~~-~~~~~~~~~l~i~GG~~~~~~~-------------------------~~~~~~~~~v~~~d~~~~~~~~---lp-~  380 (391)
                      +.. ++++..+++|||+||.+.....                         .....+.+++++||+.+++|..   +| .
T Consensus       213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  292 (323)
T TIGR03548       213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF  292 (323)
T ss_pred             ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc
Confidence            433 3345557999999998742100                         0000123579999998777764   44 4


Q ss_pred             cccccceeec
Q 016328          381 NILCHPHVKC  390 (391)
Q Consensus       381 ~~~~~~~~~~  390 (391)
                      +|..++.+.+
T Consensus       293 ~r~~~~~~~~  302 (323)
T TIGR03548       293 ARCGAALLLT  302 (323)
T ss_pred             ccCchheEEE
Confidence            5666665543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=5.5e-34  Score=241.79  Aligned_cols=268  Identities=19%  Similarity=0.291  Sum_probs=209.2

Q ss_pred             ceEEccCCCCCccCceEEEECCEEEEEeccCCCCC----CcceeEEEECCCCCeeeCCC--------C--C-CCCCcceE
Q 016328          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY----VHSHVDIYNFTDNTWGGRFD--------M--P-REMAHSHL  165 (391)
Q Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~----~~~~~~~yd~~~~~W~~~~~--------~--p-~~~~r~~~  165 (391)
                      +|+.-=+--..|-.|+++.++++||-|||+.....    .--+++++|..+-+|+++++        .  | .|..|++|
T Consensus         3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH   82 (392)
T KOG4693|consen    3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH   82 (392)
T ss_pred             eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence            46543233345789999999999999999843221    12359999999999999865        1  1 15579999


Q ss_pred             EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEECCEEEEEccCCCCccCCCccce
Q 016328          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW  242 (391)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  242 (391)
                      +++.+++++||.||++.....  -+.+++|||++++|....   -+|.+|.+|+++++++.+|||||+.+     +.++|
T Consensus        83 tvV~y~d~~yvWGGRND~ega--CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~-----~a~~F  155 (392)
T KOG4693|consen   83 TVVEYQDKAYVWGGRNDDEGA--CNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE-----DAQRF  155 (392)
T ss_pred             eEEEEcceEEEEcCccCcccc--cceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHH-----HHHhh
Confidence            999999999999999875433  688999999999999874   68899999999999999999999754     35556


Q ss_pred             EeeeecCCcccCCceee---cCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCc
Q 016328          243 SLAVKDGKPLEKEWRTE---IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK  318 (391)
Q Consensus       243 ~~~~~~~d~~~~~W~~~---~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~  318 (391)
                      +.+++.+|..+++|+.+   ...|+-|-.|+++++++.+|||||.....+.        ...-.+.+.++|..+| .+..
T Consensus       156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gp--------fHs~~e~Yc~~i~~ld~~T~a  227 (392)
T KOG4693|consen  156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGP--------FHSIHEQYCDTIMALDLATGA  227 (392)
T ss_pred             hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCC--------ccchhhhhcceeEEEeccccc
Confidence            66666677899999986   4568888889999999999999998765421        0122455788899999 9999


Q ss_pred             EEEcCCC---CCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccc------cCCCcccccceee
Q 016328          319 WKVLPSM---PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSA------FYPFNILCHPHVK  389 (391)
Q Consensus       319 W~~v~~~---~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~------~lp~~~~~~~~~~  389 (391)
                      |+.-++.   |..|.  +|++.++|++||+|||+++.-...     .+|+|+||+++..|.      +-|.+|..|+|+.
T Consensus       228 W~r~p~~~~~P~GRR--SHS~fvYng~~Y~FGGYng~ln~H-----fndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v  300 (392)
T KOG4693|consen  228 WTRTPENTMKPGGRR--SHSTFVYNGKMYMFGGYNGTLNVH-----FNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVV  300 (392)
T ss_pred             cccCCCCCcCCCccc--ccceEEEcceEEEecccchhhhhh-----hcceeecccccchheeeeccCCCCCcccceeEEE
Confidence            9987653   44443  567799999999999998753222     369999999887775      4588888888875


Q ss_pred             c
Q 016328          390 C  390 (391)
Q Consensus       390 ~  390 (391)
                      .
T Consensus       301 ~  301 (392)
T KOG4693|consen  301 S  301 (392)
T ss_pred             E
Confidence            3

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.96  E-value=9.4e-28  Score=233.82  Aligned_cols=268  Identities=20%  Similarity=0.271  Sum_probs=205.4

Q ss_pred             HHHHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCc
Q 016328           22 IFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELK  101 (391)
Q Consensus        22 ~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~  101 (391)
                      .++..|+++++++.+|++||......+..                                       .+++.+|..+..
T Consensus        59 ~~R~~hs~~~~~~~~~vfGG~~~~~~~~~---------------------------------------~dl~~~d~~~~~   99 (482)
T KOG0379|consen   59 IPRAGHSAVLIGNKLYVFGGYGSGDRLTD---------------------------------------LDLYVLDLESQL   99 (482)
T ss_pred             chhhccceeEECCEEEEECCCCCCCcccc---------------------------------------ceeEEeecCCcc
Confidence            44569999999999999999554332111                                       046677777778


Q ss_pred             eEEcc---CCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC-CCCcceEEEEEeCCEEEEE
Q 016328          102 WEKMK---AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVTDGRYIYVV  177 (391)
Q Consensus       102 W~~~~---~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~~~r~~~~~~~~~~~iyv~  177 (391)
                      |....   ..|.+|.+|.++.++++||+|||.+......++++.||+.+++|+.+..... |.+|.+|++++.+++||||
T Consensus       100 w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vf  179 (482)
T KOG0379|consen  100 WTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVF  179 (482)
T ss_pred             cccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEE
Confidence            87763   4578999999999999999999998644457889999999999999866555 6689999999999999999


Q ss_pred             eCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEECCEEEEEccCC-CCccCCCccceEeeeecCCccc
Q 016328          178 TGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSG-ENRYTPEVDHWSLAVKDGKPLE  253 (391)
Q Consensus       178 GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~~~~~~~d~~~  253 (391)
                      ||.+....  ..++++.||+++.+|+++.   +.|.||++|++++++++++||||.. ...+..       +++.+|..+
T Consensus       180 GG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~-------D~~~ldl~~  250 (482)
T KOG0379|consen  180 GGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLN-------DVHILDLST  250 (482)
T ss_pred             CCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceec-------ceEeeeccc
Confidence            99987663  3899999999999999985   6788999999999999999999987 333333       344556788


Q ss_pred             CCceeec---CCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC---
Q 016328          254 KEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP---  326 (391)
Q Consensus       254 ~~W~~~~---~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~---  326 (391)
                      .+|..++   ..|.+|..|+.+..+++++++||.....               ...+.++|.|| ++..|+.+....   
T Consensus       251 ~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~---------------~~~l~~~~~l~~~~~~w~~~~~~~~~~  315 (482)
T KOG0379|consen  251 WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK---------------QEPLGDLYGLDLETLVWSKVESVGVVR  315 (482)
T ss_pred             ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc---------------cccccccccccccccceeeeecccccc
Confidence            9999654   4678888899999999999999986531               01367899999 999999996543   


Q ss_pred             -CCCCCceeeEEEEC--CEEEEEccccCC
Q 016328          327 -KPDSHIEFAWVLVN--NSIVIVGGTTEK  352 (391)
Q Consensus       327 -~~~~~~~~~~~~~~--~~l~i~GG~~~~  352 (391)
                       .++..+........  ....++||....
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (482)
T KOG0379|consen  316 PSPRLGHAAELIDELGKDGLGILGGNQIL  344 (482)
T ss_pred             ccccccccceeeccCCccceeeecCcccc
Confidence             44444333222222  234555554433

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.96  E-value=3.7e-27  Score=229.65  Aligned_cols=251  Identities=26%  Similarity=0.434  Sum_probs=197.0

Q ss_pred             CCCCCccCceEEEECCEEEEEeccCCCCCCcc-eeEEEECCCCCeeeCCCC-CCCCCcceEEEEEeCCEEEEEeCccCCC
Q 016328          107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHS-HVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQYGPQ  184 (391)
Q Consensus       107 ~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~-~~~~yd~~~~~W~~~~~~-p~~~~r~~~~~~~~~~~iyv~GG~~~~~  184 (391)
                      ..|.+|..|+++.+++++|||||........+ +++++|..+..|...... ..|.+|+.|.++.++++||+|||.+...
T Consensus        56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~  135 (482)
T KOG0379|consen   56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY  135 (482)
T ss_pred             CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence            46888999999999999999999876555333 599999999999985432 2245899999999999999999998632


Q ss_pred             CCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceee--
Q 016328          185 CRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE--  259 (391)
Q Consensus       185 ~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~--  259 (391)
                        ..+++++.||+.|.+|+.+.   ..|.+|.+|++++++++||||||.....-      +..+++.||+++.+|.++  
T Consensus       136 --~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~------~~ndl~i~d~~~~~W~~~~~  207 (482)
T KOG0379|consen  136 --RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD------SLNDLHIYDLETSTWSELDT  207 (482)
T ss_pred             --CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc------ceeeeeeeccccccceeccc
Confidence              23789999999999999986   56899999999999999999999864321      344566778999999986  


Q ss_pred             -cCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCC---CCCCCCCcee
Q 016328          260 -IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS---MPKPDSHIEF  334 (391)
Q Consensus       260 -~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~---~~~~~~~~~~  334 (391)
                       .+.|.+|.+|++++.++++++|||.+..                +.+++|+|.|| .+.+|..+.+   +|.||..  |
T Consensus       208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~--h  269 (482)
T KOG0379|consen  208 QGEAPSPRYGHAMVVVGNKLLVFGGGDDG----------------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG--H  269 (482)
T ss_pred             CCCCCCCCCCceEEEECCeEEEEeccccC----------------CceecceEeeecccceeeeccccCCCCCCcce--e
Confidence             4557788889999999999999998722                22789999999 8999997653   4666654  5


Q ss_pred             eEEEECCEEEEEccccCCCCcccceeEecceEEEecCcccccc-------CCCccccccee
Q 016328          335 AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAF-------YPFNILCHPHV  388 (391)
Q Consensus       335 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-------lp~~~~~~~~~  388 (391)
                      ..+..+.+++|+||......     ....++|.|+..+..|..       .|.++..|..+
T Consensus       270 ~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  325 (482)
T KOG0379|consen  270 SLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAE  325 (482)
T ss_pred             eeEEECCEEEEEcCCccccc-----ccccccccccccccceeeeeccccccccccccccce
Confidence            66799999999999886411     023589999997555543       34455555443

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.96  E-value=8.5e-28  Score=215.52  Aligned_cols=260  Identities=19%  Similarity=0.296  Sum_probs=197.6

Q ss_pred             cCCCCCccCceEEEE--CCEEEEEecc--CCCC-CCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeC
Q 016328          106 KAAPVPRLDGAAIQI--KNLLYVFAGY--GSID-YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTG  179 (391)
Q Consensus       106 ~~~p~~r~~~~~~~~--~~~vyv~GG~--~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG  179 (391)
                      -+.|.||.++++...  .+.|++|||.  ++.. .+-++++.||..+++|+.+.....|.+|+.|.++++ .|.+|+|||
T Consensus        61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG  140 (521)
T KOG1230|consen   61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG  140 (521)
T ss_pred             CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence            356899999998765  4589999996  3322 356789999999999999876666668888877766 489999999


Q ss_pred             ccCCC---CCCCcceeEEEeCCCCceEECC--CCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328          180 QYGPQ---CRGPTAHTFVLDTETKKWQDLP--PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK  254 (391)
Q Consensus       180 ~~~~~---~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~  254 (391)
                      ....-   ......++|.||..+++|+++.  .-|.||++|.+++...+|++|||+.+.   +..-.|-.++|+||..+=
T Consensus       141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~---nr~y~YyNDvy~FdLdty  217 (521)
T KOG1230|consen  141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS---NRDYIYYNDVYAFDLDTY  217 (521)
T ss_pred             ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC---CCceEEeeeeEEEeccce
Confidence            75432   2223689999999999999985  678999999999999999999999764   334556667888889999


Q ss_pred             CceeecC---CCCCCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-Cc-----CcEEEcCC
Q 016328          255 EWRTEIP---IPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE-----MKWKVLPS  324 (391)
Q Consensus       255 ~W~~~~~---~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~-----~~W~~v~~  324 (391)
                      +|+.+.+   -|.+|.++...+. ++.|||+||++.....+        .....+...|+|.++ ..     -+|+.+.+
T Consensus       218 kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK--------~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp  289 (521)
T KOG1230|consen  218 KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKK--------DVDKGTRHSDMFLLKPEDGREDKWVWTKVKP  289 (521)
T ss_pred             eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhh--------hhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence            9998754   3677877788777 99999999997543111        112234567899998 55     58899876


Q ss_pred             ---CCCCCCCceeeEEEECCEEEEEccccCC--CCcccceeEecceEEEecCcccccc
Q 016328          325 ---MPKPDSHIEFAWVLVNNSIVIVGGTTEK--HPTTKKMVLVGEIFQFNLNTLVSAF  377 (391)
Q Consensus       325 ---~~~~~~~~~~~~~~~~~~l~i~GG~~~~--~~~~~~~~~~~~v~~~d~~~~~~~~  377 (391)
                         .|.||...+++ +..+++-|.|||..+.  ........+.+|+|-||+..++|..
T Consensus       290 ~g~kPspRsgfsv~-va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~  346 (521)
T KOG1230|consen  290 SGVKPSPRSGFSVA-VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSE  346 (521)
T ss_pred             CCCCCCCCCceeEE-EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhH
Confidence               37777776554 5567799999998652  2333445678899999998777653

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.3e-27  Score=217.58  Aligned_cols=290  Identities=15%  Similarity=0.226  Sum_probs=212.8

Q ss_pred             CCCCCCCceeeEeecC---cccccccccccccccccccCceEEc---cCCCCCccCceEEEECCEEEEEeccCCCCCCcc
Q 016328           65 NNGPQKGENIGVKTKK---DVVPKRILPATFQDLPAPELKWEKM---KAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHS  138 (391)
Q Consensus        65 ~~~~r~~~g~~~~~~~---~~~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~  138 (391)
                      .+.||++|-.+.+.+-   +..+...+-++++.||..+++|..-   .++|.+.+.|..+..+.+||+|||..+-+.+.+
T Consensus        29 vPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsN  108 (830)
T KOG4152|consen   29 VPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSN  108 (830)
T ss_pred             CCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccc
Confidence            3667887655544444   2233334556899999999999753   578888889999999999999999988888777


Q ss_pred             eeEEEECCCCCeeeCCCC-----CCCCCcceEEEEEeCCEEEEEeCccCCCCC------CCcceeEEEeCCCC----ceE
Q 016328          139 HVDIYNFTDNTWGGRFDM-----PREMAHSHLGMVTDGRYIYVVTGQYGPQCR------GPTAHTFVLDTETK----KWQ  203 (391)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~-----p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~~~~~~~yd~~~~----~W~  203 (391)
                      +++.+....-.|+++.+-     +.|.+|-+|+..+++++-|+|||...+...      ..+++++.+++...    .|.
T Consensus       109 dLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~  188 (830)
T KOG4152|consen  109 DLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWD  188 (830)
T ss_pred             hHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEe
Confidence            666555555567776432     225689999999999999999998543211      12788888877643    387


Q ss_pred             EC---CCCCCCCCCceEEEE------CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceee-----cCCCCCCcce
Q 016328          204 DL---PPLPVPRYAPATQLW------RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE-----IPIPRGGPHR  269 (391)
Q Consensus       204 ~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-----~~~p~~~~~~  269 (391)
                      ..   ..+|.+|..|+++++      ..++||+||.++-+.   .+.|.+     |.++..|.+.     +||||..  |
T Consensus       189 ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RL---gDLW~L-----dl~Tl~W~kp~~~G~~PlPRSL--H  258 (830)
T KOG4152|consen  189 IPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRL---GDLWTL-----DLDTLTWNKPSLSGVAPLPRSL--H  258 (830)
T ss_pred             cccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccc---cceeEE-----ecceeecccccccCCCCCCccc--c
Confidence            65   378999999999987      347999999987432   455665     4779999864     5677766  4


Q ss_pred             eEEEECCEEEEEeCCCCCC----CcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC-----CCCCCCCCceeeEEEE
Q 016328          270 ACVVVDDRLLVIGGQEGDF----MAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP-----SMPKPDSHIEFAWVLV  339 (391)
Q Consensus       270 ~~~~~~~~i~v~GG~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~-----~~~~~~~~~~~~~~~~  339 (391)
                      +++.+++++|||||.-...    ...+-+...+|+       +.+-+++ .++.|..+-     +-..||.|++|+++.+
T Consensus       259 sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCT-------ssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi  331 (830)
T KOG4152|consen  259 SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCT-------SSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI  331 (830)
T ss_pred             cceeecceeEEecceeeeeccccccccccceeeec-------cceeeeeecchheeeeeeccccccccccccccceeEEe
Confidence            9999999999999974221    111112233332       3355667 889998873     2236788889999999


Q ss_pred             CCEEEEEccccCCCCcccceeEecceEEEecC
Q 016328          340 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN  371 (391)
Q Consensus       340 ~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~  371 (391)
                      +.+|||..|+++..+..+......|+|-+|.+
T Consensus       332 gtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe  363 (830)
T KOG4152|consen  332 GTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE  363 (830)
T ss_pred             ccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence            99999999999998888777777889988874

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.6e-26  Score=212.18  Aligned_cols=275  Identities=17%  Similarity=0.259  Sum_probs=206.4

Q ss_pred             HHHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCC-----CCCCCCceeeEeecC-ccccc----ccccccc
Q 016328           23 FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN-----NGPQKGENIGVKTKK-DVVPK----RILPATF   92 (391)
Q Consensus        23 ~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~-----~~~r~~~g~~~~~~~-~~~~~----~~~~~~~   92 (391)
                      .++.|-++.+...|.+|||-+. ...+.++.||-.+|++.+|.     +++-..+|....+.. +.+++    ..+++++
T Consensus        32 pRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdL  110 (830)
T KOG4152|consen   32 PRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDL  110 (830)
T ss_pred             ccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchH
Confidence            3568889999999999998443 26788999999999977776     344445666655544 44433    3566788


Q ss_pred             cccccccCceEEcc-------CCCCCccCceEEEECCEEEEEeccCCC--------CCCcceeEEEECCCC----CeeeC
Q 016328           93 QDLPAPELKWEKMK-------AAPVPRLDGAAIQIKNLLYVFAGYGSI--------DYVHSHVDIYNFTDN----TWGGR  153 (391)
Q Consensus        93 ~~~d~~~~~W~~~~-------~~p~~r~~~~~~~~~~~vyv~GG~~~~--------~~~~~~~~~yd~~~~----~W~~~  153 (391)
                      +.+......|+++.       ++|.||-+|+..+++++.|+|||....        ..++++++++++...    .|...
T Consensus       111 YELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip  190 (830)
T KOG4152|consen  111 YELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIP  190 (830)
T ss_pred             HHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecc
Confidence            88877778888884       367899999999999999999997321        237788999998855    38873


Q ss_pred             ---CCCCCCCCcceEEEEEe------CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEEC
Q 016328          154 ---FDMPREMAHSHLGMVTD------GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWR  221 (391)
Q Consensus       154 ---~~~p~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~  221 (391)
                         ..+|.  +|..|+++++      ..++||+||..+-.    +.++|.+|++|-+|++..   ..|.||+.|++++++
T Consensus       191 ~t~Gv~P~--pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IG  264 (830)
T KOG4152|consen  191 ITYGVLPP--PRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIG  264 (830)
T ss_pred             cccCCCCC--CcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccccCCCCCCcccccceeec
Confidence               34444  7888888887      34899999998865    799999999999999875   578899999999999


Q ss_pred             CEEEEEccCC-----CCccCCCccceEee--eecCCcccCCceeec-------CCCCCCcceeEEEECCEEEEEeCCCCC
Q 016328          222 GRLHVMGGSG-----ENRYTPEVDHWSLA--VKDGKPLEKEWRTEI-------PIPRGGPHRACVVVDDRLLVIGGQEGD  287 (391)
Q Consensus       222 ~~iyv~GG~~-----~~~~~~~~~~~~~~--~~~~d~~~~~W~~~~-------~~p~~~~~~~~~~~~~~i~v~GG~~~~  287 (391)
                      +++|||||+-     +.........|...  +-++|..++.|+.+-       ..||+|.+|+++.++.++|+..|+++.
T Consensus       265 nKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGY  344 (830)
T KOG4152|consen  265 NKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGY  344 (830)
T ss_pred             ceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchh
Confidence            9999999973     22222233344432  445667899998752       369999999999999999999998865


Q ss_pred             CCcCCCCCccccCcCCceecCcEEEEc
Q 016328          288 FMAKPGSPIFKCSRRNEVVYDDVYMLD  314 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~v~~~d  314 (391)
                      ..         + ...++-..|+|-+|
T Consensus       345 rK---------A-wnnQVCCkDlWyLd  361 (830)
T KOG4152|consen  345 RK---------A-WNNQVCCKDLWYLD  361 (830)
T ss_pred             hH---------h-hccccchhhhhhhc
Confidence            31         1 22344456677775

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.93  E-value=3.4e-25  Score=198.87  Aligned_cols=254  Identities=20%  Similarity=0.291  Sum_probs=182.6

Q ss_pred             eecCCCCCCCCcee---------eEeecC-cccccccccccccccccccCceEEc--cCCCCCccCceEEEEC-CEEEEE
Q 016328           61 IILPNNGPQKGENI---------GVKTKK-DVVPKRILPATFQDLPAPELKWEKM--KAAPVPRLDGAAIQIK-NLLYVF  127 (391)
Q Consensus        61 ~~lp~~~~r~~~g~---------~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~~-~~vyv~  127 (391)
                      ..+|+++||....+         .++++. +......+-++++.||...+.|.++  ++.|.||+.|+++++. +.+|+|
T Consensus        59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f  138 (521)
T KOG1230|consen   59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF  138 (521)
T ss_pred             ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence            55666777776333         333333 4444445667899999999999988  5568999999998885 799999


Q ss_pred             eccCCC-C----CCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCC-CCCCCcceeEEEeCCCCc
Q 016328          128 AGYGSI-D----YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGP-QCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       128 GG~~~~-~----~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~yd~~~~~  201 (391)
                      ||.-.. +    .--.++|+||+.+++|+++..-..|.+|++|-++++.++|++|||+... ......|++|+||+++-+
T Consensus       139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk  218 (521)
T KOG1230|consen  139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK  218 (521)
T ss_pred             ccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence            997322 1    1235799999999999998776677799999999999999999998543 222348999999999999


Q ss_pred             eEECCC---CCCCCCCceEEEE-CCEEEEEccCCCCcc-------CCCccceEeeeecCCcccCCceeecC---CCCCCc
Q 016328          202 WQDLPP---LPVPRYAPATQLW-RGRLHVMGGSGENRY-------TPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGP  267 (391)
Q Consensus       202 W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~~~~-------~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~  267 (391)
                      |+.+.+   -|.||+++++.+. ++.|||.||++-...       ....+.|.+.....+...-+|..+.|   .|.+|.
T Consensus       219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs  298 (521)
T KOG1230|consen  219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS  298 (521)
T ss_pred             eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence            999964   4789999999988 999999999863221       11223444332211111256777644   366666


Q ss_pred             ceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEc
Q 016328          268 HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL  322 (391)
Q Consensus       268 ~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v  322 (391)
                      ++++++. +++-+.|||...-....        ..-...+.+|+|.|| ..++|...
T Consensus       299 gfsv~va~n~kal~FGGV~D~eeee--------Esl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  299 GFSVAVAKNHKALFFGGVCDLEEEE--------ESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             ceeEEEecCCceEEecceecccccc--------hhhhhhhhhhhhheecccchhhHh
Confidence            7787766 56999999986421100        011224689999999 99999776

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.83  E-value=5e-19  Score=157.36  Aligned_cols=257  Identities=20%  Similarity=0.251  Sum_probs=175.8

Q ss_pred             cccccccc--cCceEEccCCC-CCccCceEEEECCEEEEEeccCCC----CCCcceeEEEECCCCCeeeCCCCCCCCCcc
Q 016328           91 TFQDLPAP--ELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSI----DYVHSHVDIYNFTDNTWGGRFDMPREMAHS  163 (391)
Q Consensus        91 ~~~~~d~~--~~~W~~~~~~p-~~r~~~~~~~~~~~vyv~GG~~~~----~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~  163 (391)
                      .++.+|..  ...|++++..| .+|.+..+++++++||||||....    .+..+++++||+.+|+|+.+.... |..-.
T Consensus        59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~  137 (381)
T COG3055          59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLV  137 (381)
T ss_pred             cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccc
Confidence            45555544  35899999988 778889999999999999998432    346788999999999999986432 22445


Q ss_pred             eEEEEEeCC-EEEEEeCccCCCC-------------------------------CCCcceeEEEeCCCCceEECCCCC-C
Q 016328          164 HLGMVTDGR-YIYVVTGQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLP-V  210 (391)
Q Consensus       164 ~~~~~~~~~-~iyv~GG~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~~-~  210 (391)
                      .+..+.+++ +||++||.+...-                               ..-..++..|||.+++|+.+...| .
T Consensus       138 G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~  217 (381)
T COG3055         138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY  217 (381)
T ss_pred             cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCccc
Confidence            667777776 9999999852110                               012567889999999999999777 6


Q ss_pred             CCCCceEEEECCEEEEEccCCC-CccCCCccceEeeeecCCcccCCceeecCCCCC-------CcceeEEEECCEEEEEe
Q 016328          211 PRYAPATQLWRGRLHVMGGSGE-NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG-------GPHRACVVVDDRLLVIG  282 (391)
Q Consensus       211 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------~~~~~~~~~~~~i~v~G  282 (391)
                      ++++++.+.-++++.++-|.-- .-..+.+.+.++     .-...+|..++++|..       ..++-.-..++.+.+.|
T Consensus       218 ~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~-----~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~G  292 (381)
T COG3055         218 GNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADF-----GGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAG  292 (381)
T ss_pred             CccCcceeecCCeEEEEcceecCCccccceeEEEe-----ccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEec
Confidence            8888777777888888877532 222223333332     3567889988766532       22222335688899999


Q ss_pred             CCCCCCCcCCCCCccccCcC--CceecCcEEEEcCcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcc
Q 016328          283 GQEGDFMAKPGSPIFKCSRR--NEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTT  356 (391)
Q Consensus       283 G~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~d~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~  356 (391)
                      |.+.+...+...+..--.+.  ...+.++||.+| ++.|+.+..||.++.. + +.+..++.||++||.+..+...
T Consensus       293 GAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~Y-G-~s~~~nn~vl~IGGE~~~Gka~  365 (381)
T COG3055         293 GANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAY-G-VSLSYNNKVLLIGGETSGGKAT  365 (381)
T ss_pred             CCCChhHHHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccc-e-EEEecCCcEEEEccccCCCeee
Confidence            97643321111000000111  123567899995 8899999999987654 2 3478899999999998776543

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.82  E-value=1.3e-18  Score=154.70  Aligned_cols=261  Identities=20%  Similarity=0.289  Sum_probs=188.7

Q ss_pred             EEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCC--CCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCc
Q 016328          103 EKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTD--NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ  180 (391)
Q Consensus       103 ~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~  180 (391)
                      +.+|++|.+-..-+.+.+++.+||-=|..+.     +.+..|++.  ..|+.++..|.+ +|.....++++++||||||.
T Consensus        28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~  101 (381)
T COG3055          28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY  101 (381)
T ss_pred             ccCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence            3568899998888888999999996664332     355666654  589999999986 68888999999999999998


Q ss_pred             cCCCC--CCCcceeEEEeCCCCceEECC-CCCCCCCCceEEEECC-EEEEEccCCCCc----------------------
Q 016328          181 YGPQC--RGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRG-RLHVMGGSGENR----------------------  234 (391)
Q Consensus       181 ~~~~~--~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~-~iyv~GG~~~~~----------------------  234 (391)
                      .....  .+..+++++|||.+++|+++. ..|....++.++.+++ +||++||.....                      
T Consensus       102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~  181 (381)
T COG3055         102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII  181 (381)
T ss_pred             ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence            54433  334789999999999999997 4567778888888888 999999986421                      


Q ss_pred             -----cCCCccceEeeeecCCcccCCceeecCCCC-CCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecC
Q 016328          235 -----YTPEVDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD  308 (391)
Q Consensus       235 -----~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~  308 (391)
                           ..+....|+.++..|||++++|+.+...|- ++++++.+.-++++.++-|+-.+.           .++     .
T Consensus       182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG-----------LRt-----~  245 (381)
T COG3055         182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG-----------LRT-----A  245 (381)
T ss_pred             HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC-----------ccc-----c
Confidence                 112233567778889999999999876653 344445555678899999986554           122     2


Q ss_pred             cEEE--Ec-CcCcEEEcCCCCCCCCCc-----eeeEEEECCEEEEEccccCCCC----------ccc--ceeEecceEEE
Q 016328          309 DVYM--LD-DEMKWKVLPSMPKPDSHI-----EFAWVLVNNSIVIVGGTTEKHP----------TTK--KMVLVGEIFQF  368 (391)
Q Consensus       309 ~v~~--~d-~~~~W~~v~~~~~~~~~~-----~~~~~~~~~~l~i~GG~~~~~~----------~~~--~~~~~~~v~~~  368 (391)
                      +++.  +. ...+|..+.++|.+....     ++-.-..++.+++.||-+..+.          .+.  +-....+||.+
T Consensus       246 ~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~  325 (381)
T COG3055         246 EVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIF  325 (381)
T ss_pred             ceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEE
Confidence            3444  44 577999998887665322     1222456889999999663321          010  11256799999


Q ss_pred             ecCccc-cccCCCccccc
Q 016328          369 NLNTLV-SAFYPFNILCH  385 (391)
Q Consensus       369 d~~~~~-~~~lp~~~~~~  385 (391)
                      |-+.|+ ..+||+++.+-
T Consensus       326 d~g~Wk~~GeLp~~l~YG  343 (381)
T COG3055         326 DNGSWKIVGELPQGLAYG  343 (381)
T ss_pred             cCCceeeecccCCCccce
Confidence            999999 88999976543

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.47  E-value=3.6e-15  Score=137.65  Aligned_cols=296  Identities=15%  Similarity=0.172  Sum_probs=178.3

Q ss_pred             HHHHHhheecC--EEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCc
Q 016328           24 VMILGFALVAD--FFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELK  101 (391)
Q Consensus        24 ~~~~~~~~~~~--~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~  101 (391)
                      .+.|..+.-.+  -+|+.||++|-+.+.                                         ++|.|+..++.
T Consensus       261 RgGHQMV~~~~~~CiYLYGGWdG~~~l~-----------------------------------------DFW~Y~v~e~~  299 (723)
T KOG2437|consen  261 RGGHQMVIDVQTECVYLYGGWDGTQDLA-----------------------------------------DFWAYSVKENQ  299 (723)
T ss_pred             cCcceEEEeCCCcEEEEecCcccchhHH-----------------------------------------HHHhhcCCcce
Confidence            45777777655  899999999977533                                         67777778888


Q ss_pred             eEEc---cCCCCCccCceEEEECC--EEEEEeccCCCC-----CCcceeEEEECCCCCeeeCCCC----CCCCCcceEEE
Q 016328          102 WEKM---KAAPVPRLDGAAIQIKN--LLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDM----PREMAHSHLGM  167 (391)
Q Consensus       102 W~~~---~~~p~~r~~~~~~~~~~--~vyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~----p~~~~r~~~~~  167 (391)
                      |..+   ...|-+|..|-++..-.  ++|+.|-+-+..     ...+++|+||..++.|..+.--    ..|..-+.|.+
T Consensus       300 W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM  379 (723)
T KOG2437|consen  300 WTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQM  379 (723)
T ss_pred             eEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeeccee
Confidence            9876   35799999999987754  999999873321     2446799999999999986421    11335677899


Q ss_pred             EEeCCE--EEEEeCccCCCCCCCcceeEEEeCCCCceEECCC----------CCCCCCCceEEE--ECCEEEEEccCCCC
Q 016328          168 VTDGRY--IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP----------LPVPRYAPATQL--WRGRLHVMGGSGEN  233 (391)
Q Consensus       168 ~~~~~~--iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~----------~~~~r~~~~~~~--~~~~iyv~GG~~~~  233 (391)
                      ++.+.+  |||+||+.-........-++.||.....|..+..          ....|.+|++-.  -++++|++||....
T Consensus       380 ~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  380 CVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK  459 (723)
T ss_pred             eEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence            998887  9999998544322236789999999999988741          224566666654  47789999997643


Q ss_pred             ccCCCccceEeeeecCCcccCCcee-ecCC-CCCCcc--eeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCc
Q 016328          234 RYTPEVDHWSLAVKDGKPLEKEWRT-EIPI-PRGGPH--RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  309 (391)
Q Consensus       234 ~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~-p~~~~~--~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (391)
                      .-..-.-.|++....-+... .-+. -.++ |.....  ...-.-..+|.+.-|......           .......+.
T Consensus       460 ~El~L~f~y~I~~E~~~~~s-~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~-----------~~e~~~rns  527 (723)
T KOG2437|consen  460 TELNLFFSYDIDSEHVDIIS-DGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKE-----------KREENVRNS  527 (723)
T ss_pred             eEEeehhcceeccccchhhh-ccCcCccccCCCcchhhhcccCCCCcchhhhcccchhcc-----------CccccccCc
Confidence            22222222322211110000 0000 0111 111100  011112345666666543321           112224556


Q ss_pred             EEEEc-CcCcEEEcCC------------------------CCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecc
Q 016328          310 VYMLD-DEMKWKVLPS------------------------MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGE  364 (391)
Q Consensus       310 v~~~d-~~~~W~~v~~------------------------~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~  364 (391)
                      +|.|+ .++.|..|-.                        ++.+|..+..++.+..+-+|++||....+.....  ...|
T Consensus       528 ~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m--~l~d  605 (723)
T KOG2437|consen  528 FWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKM--RLDD  605 (723)
T ss_pred             EEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchh--hhhh
Confidence            77777 7777766522                        1234443333333445678999998876654322  2457


Q ss_pred             eEEEecCccc
Q 016328          365 IFQFNLNTLV  374 (391)
Q Consensus       365 v~~~d~~~~~  374 (391)
                      .|..+.-+|.
T Consensus       606 fW~l~I~rp~  615 (723)
T KOG2437|consen  606 FWSLKICRPS  615 (723)
T ss_pred             HHHHhhcccc
Confidence            7777776666

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.46  E-value=2.9e-14  Score=131.74  Aligned_cols=184  Identities=16%  Similarity=0.201  Sum_probs=135.9

Q ss_pred             cCceEEccC----------CCCCccCceEEEECC--EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC-CCCCcceE
Q 016328           99 ELKWEKMKA----------APVPRLDGAAIQIKN--LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHL  165 (391)
Q Consensus        99 ~~~W~~~~~----------~p~~r~~~~~~~~~~--~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~~~r~~~  165 (391)
                      ..+|.++++          -|..|.+|.++...+  .||+.||+++.+. +.++|+|+...+.|..+..-. .|-.|.+|
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH  316 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARSCH  316 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence            458987743          367899999998865  9999999999887 466999999999999875322 34489999


Q ss_pred             EEEEeCC--EEEEEeCccCCCCC---CCcceeEEEeCCCCceEECC------CCCCCCCCceEEEECCE--EEEEccCCC
Q 016328          166 GMVTDGR--YIYVVTGQYGPQCR---GPTAHTFVLDTETKKWQDLP------PLPVPRYAPATQLWRGR--LHVMGGSGE  232 (391)
Q Consensus       166 ~~~~~~~--~iyv~GG~~~~~~~---~~~~~~~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~--iyv~GG~~~  232 (391)
                      -++....  ++|++|-+-+....   ...+++|+||..++.|..+.      .-|...+-|.+++..++  |||+||+.-
T Consensus       317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~  396 (723)
T KOG2437|consen  317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL  396 (723)
T ss_pred             hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence            8888765  99999987544322   23689999999999999986      23566788999999888  999999864


Q ss_pred             CccCCCccceEeeeecCCcccCCceeecCC----------CCCCcceeE--EEECCEEEEEeCCCCC
Q 016328          233 NRYTPEVDHWSLAVKDGKPLEKEWRTEIPI----------PRGGPHRAC--VVVDDRLLVIGGQEGD  287 (391)
Q Consensus       233 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----------p~~~~~~~~--~~~~~~i~v~GG~~~~  287 (391)
                      .   +...+|. -+|.||.+...|..+..-          -..|.+|++  +.-+..+|++||...+
T Consensus       397 ~---~~e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  397 T---CNEPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK  459 (723)
T ss_pred             c---CCCcccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence            3   2233443 367778999999865321          123334444  4457789999997644

>PF13964 Kelch_6: Kelch motif

Probab=99.32  E-value=4.5e-12  Score=83.70  Aligned_cols=50  Identities=32%  Similarity=0.517  Sum_probs=44.8

Q ss_pred             CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCC
Q 016328          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR  212 (391)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r  212 (391)
                      +|.++++++++++|||+||.....  ...+++++||+++++|+.+++||.||
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~--~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSG--KYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCC--CccccEEEEcCCCCcEEECCCCCCCC
Confidence            478899999999999999998742  34899999999999999999999987

>PF13964 Kelch_6: Kelch motif

Probab=99.31  E-value=5.2e-12  Score=83.36  Aligned_cols=49  Identities=31%  Similarity=0.562  Sum_probs=44.9

Q ss_pred             CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCC
Q 016328          111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE  159 (391)
Q Consensus       111 ~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  159 (391)
                      ||.+|++++++++|||+||.......++++++||+.+++|+.+++||.|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence            6999999999999999999987566678899999999999999999983

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.18  E-value=2.4e-11  Score=79.11  Aligned_cols=47  Identities=34%  Similarity=0.604  Sum_probs=43.1

Q ss_pred             CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC
Q 016328          111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP  157 (391)
Q Consensus       111 ~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p  157 (391)
                      ||.+|++++++++|||+||.+.....++++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            68999999999999999999886777899999999999999998886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.06  E-value=2e-10  Score=74.76  Aligned_cols=47  Identities=40%  Similarity=0.700  Sum_probs=41.4

Q ss_pred             CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCC
Q 016328          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP  209 (391)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~  209 (391)
                      +|..+++++++++|||+||.++..  ..++++++||+++++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence            478999999999999999998833  24899999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.01  E-value=8.7e-10  Score=72.25  Aligned_cols=49  Identities=24%  Similarity=0.462  Sum_probs=42.1

Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW  220 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~  220 (391)
                      +++||||||.+... ...++++++||+.+++|++++++|.+|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            57999999998422 23489999999999999999999999999999863

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.01  E-value=9.6e-10  Score=72.05  Aligned_cols=47  Identities=26%  Similarity=0.482  Sum_probs=41.5

Q ss_pred             CccCceEEEECCEEEEEecc--CCCCCCcceeEEEECCCCCeeeCCCCC
Q 016328          111 PRLDGAAIQIKNLLYVFAGY--GSIDYVHSHVDIYNFTDNTWGGRFDMP  157 (391)
Q Consensus       111 ~r~~~~~~~~~~~vyv~GG~--~~~~~~~~~~~~yd~~~~~W~~~~~~p  157 (391)
                      ||.+|++++++++|||+||.  +......+++++||+++++|+.+++||
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            68999999999999999999  444556788999999999999998775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=99.00  E-value=3.5e-10  Score=74.25  Aligned_cols=47  Identities=34%  Similarity=0.569  Sum_probs=32.2

Q ss_pred             CccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC
Q 016328          111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP  157 (391)
Q Consensus       111 ~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p  157 (391)
                      ||.+|+++.+ +++|||+||.+.....++++++||+.+++|++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            6999999998 5899999999887667889999999999999998876

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.97  E-value=2.2e-09  Score=70.30  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=40.5

Q ss_pred             CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCC
Q 016328          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP  209 (391)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~  209 (391)
                      +|..|++++.+++|||+||..........++++.||+++++|+++++|+
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            4789999999999999999922222234899999999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.91  E-value=3.7e-09  Score=69.23  Aligned_cols=48  Identities=29%  Similarity=0.412  Sum_probs=41.7

Q ss_pred             CCEEEEEeccC-CCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328          121 KNLLYVFAGYG-SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus       121 ~~~vyv~GG~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      +++|||+||.+ .....++++++||+.+++|++++++|.  +|..|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence            57899999998 456678899999999999999988877  8999988763

>smart00612 Kelch Kelch domain

Probab=98.87  E-value=4.2e-09  Score=68.28  Aligned_cols=47  Identities=40%  Similarity=0.630  Sum_probs=41.2

Q ss_pred             EEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECC
Q 016328          173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG  222 (391)
Q Consensus       173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~  222 (391)
                      +|||+||..+..   ..+++++||+.+++|+.+++|+.+|..|+++++++
T Consensus         1 ~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQ---RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCc---eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            489999986532   37899999999999999999999999999998864

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.85  E-value=2.9e-09  Score=69.80  Aligned_cols=48  Identities=27%  Similarity=0.519  Sum_probs=30.3

Q ss_pred             CcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCC
Q 016328          161 AHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV  210 (391)
Q Consensus       161 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~  210 (391)
                      +|..|+++.. +++|||+||.+....  .++++++||+++++|++++++|.
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~--~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGS--PLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TE--E---EEEEETTTTEEEE--SS--
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCc--ccCCEEEEECCCCEEEECCCCCC
Confidence            4778888887 589999999987642  38999999999999999988773

>smart00612 Kelch Kelch domain

Probab=98.70  E-value=2.8e-08  Score=64.30  Aligned_cols=47  Identities=23%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCC
Q 016328          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR  172 (391)
Q Consensus       123 ~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~  172 (391)
                      +|||+||.+.. ...+++++||+.+++|+.+++|+.  +|..++++++++
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccceEEEeCC
Confidence            48999998753 346789999999999999999988  788888887764

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.67  E-value=2.7e-06  Score=74.96  Aligned_cols=154  Identities=17%  Similarity=0.261  Sum_probs=97.6

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceE-EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCC----CceEECC-CCCCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHL-GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET----KKWQDLP-PLPVP  211 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~----~~W~~~~-~~~~~  211 (391)
                      .....||+.+++++.+.....   -.+. .+..-++++.++||... +    ...+..|++.+    ..|.+.+ .|..+
T Consensus        46 a~s~~yD~~tn~~rpl~v~td---~FCSgg~~L~dG~ll~tGG~~~-G----~~~ir~~~p~~~~~~~~w~e~~~~m~~~  117 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQTD---TFCSGGAFLPDGRLLQTGGDND-G----NKAIRIFTPCTSDGTCDWTESPNDMQSG  117 (243)
T ss_pred             EEEEEEecCCCcEEeccCCCC---CcccCcCCCCCCCEEEeCCCCc-c----ccceEEEecCCCCCCCCceECcccccCC
Confidence            346789999999998754332   2222 23345889999999754 2    35566788876    6798886 58999


Q ss_pred             CCCceEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeec----CCCCCCcceeEEEECCEEEEEeCCCC
Q 016328          212 RYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI----PIPRGGPHRACVVVDDRLLVIGGQEG  286 (391)
Q Consensus       212 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~----~~p~~~~~~~~~~~~~~i~v~GG~~~  286 (391)
                      |.++++..+ +|+++|+||.....+    |.|.....  ......|..+.    ..+...+-+..+.-+++||+++....
T Consensus       118 RWYpT~~~L~DG~vlIvGG~~~~t~----E~~P~~~~--~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s  191 (243)
T PF07250_consen  118 RWYPTATTLPDGRVLIVGGSNNPTY----EFWPPKGP--GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS  191 (243)
T ss_pred             CccccceECCCCCEEEEeCcCCCcc----cccCCccC--CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc
Confidence            999988865 789999999874322    21110000  01111222221    23455555677778999999998631


Q ss_pred             CCCcCCCCCccccCcCCceecCcEEEEcCcCcE-EEcCCCCCC
Q 016328          287 DFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKW-KVLPSMPKP  328 (391)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~W-~~v~~~~~~  328 (391)
                                            .++++ .++++ +.++.+|..
T Consensus       192 ----------------------~i~d~-~~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  192 ----------------------IIYDY-KTNTVVRTLPDLPGG  211 (243)
T ss_pred             ----------------------EEEeC-CCCeEEeeCCCCCCC
Confidence                                  24544 66655 788887753

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02772 guanylate kinase

Probab=98.61  E-value=3.3e-07  Score=85.59  Aligned_cols=87  Identities=17%  Similarity=0.232  Sum_probs=68.9

Q ss_pred             CCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC-CCCCcceEEEEEe-CCEEEEEeCccCCCCC
Q 016328          109 PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHLGMVTD-GRYIYVVTGQYGPQCR  186 (391)
Q Consensus       109 p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~  186 (391)
                      ..|+..++++.+++++||+||.++.....+.+++||..+++|....-+. .|.+|..|+++++ +++|+|+++..+.   
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---   98 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---   98 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence            4588899999999999999998886656788999999999999854322 2447888988887 6799999876543   


Q ss_pred             CCcceeEEEeCCCC
Q 016328          187 GPTAHTFVLDTETK  200 (391)
Q Consensus       187 ~~~~~~~~yd~~~~  200 (391)
                        -.++|.+...|.
T Consensus        99 --~~~~w~l~~~t~  110 (398)
T PLN02772         99 --DDSIWFLEVDTP  110 (398)
T ss_pred             --ccceEEEEcCCH
Confidence              367788777664

>PF13854 Kelch_5: Kelch motif

Probab=98.60  E-value=1.1e-07  Score=59.91  Aligned_cols=40  Identities=23%  Similarity=0.546  Sum_probs=35.7

Q ss_pred             CCCCccCceEEEECCEEEEEeccCC-CCCCcceeEEEECCC
Q 016328          108 APVPRLDGAAIQIKNLLYVFAGYGS-IDYVHSHVDIYNFTD  147 (391)
Q Consensus       108 ~p~~r~~~~~~~~~~~vyv~GG~~~-~~~~~~~~~~yd~~~  147 (391)
                      +|.+|.+|+++.++++|||+||.+. .+...+++|+||+.+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            5889999999999999999999984 666788999999876

>PLN02772 guanylate kinase

Probab=98.50  E-value=8.6e-07  Score=82.85  Aligned_cols=79  Identities=22%  Similarity=0.307  Sum_probs=64.1

Q ss_pred             CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEE-CCEEEEEccCCCCccC
Q 016328          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLW-RGRLHVMGGSGENRYT  236 (391)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~  236 (391)
                      ++..++++.+++++||+||.+....  ..+.+++||+.+.+|....   +.|.||.+|+++++ +++|+|+++...    
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~~~--~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~----   97 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEGNT--LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA----   97 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCCcc--ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC----
Confidence            4677899999999999999876442  2689999999999999875   78899999999988 678999997653    


Q ss_pred             CCccceEee
Q 016328          237 PEVDHWSLA  245 (391)
Q Consensus       237 ~~~~~~~~~  245 (391)
                      ++...|-++
T Consensus        98 ~~~~~w~l~  106 (398)
T PLN02772         98 PDDSIWFLE  106 (398)
T ss_pred             CccceEEEE
Confidence            235556654

>PF13854 Kelch_5: Kelch motif

Probab=98.35  E-value=1.3e-06  Score=54.94  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             CCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       159 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      |.+|..|++++++++|||+||.++ ......+++|+||+.+
T Consensus         2 P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    2 PSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence            347999999999999999999985 2223489999999876

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.28  E-value=0.00024  Score=63.00  Aligned_cols=181  Identities=14%  Similarity=0.214  Sum_probs=107.0

Q ss_pred             ccccccccccCceEEccCCCCCccCc----eEEEEC----C-EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCC
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLDG----AAIQIK----N-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM  160 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~----~~~~~~----~-~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~  160 (391)
                      ..+..+||.+.+|..+|+.+.++...    ...-++    + +|..+....... ....+++|+..+++|+.+...+...
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~   92 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHH   92 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCc
Confidence            36889999999999998655432211    111122    1 555554432111 2346999999999999987433211


Q ss_pred             CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEE-CCCCCCCC----CCceEEEECCEEEEEccCCCCcc
Q 016328          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD-LPPLPVPR----YAPATQLWRGRLHVMGGSGENRY  235 (391)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~  235 (391)
                      .... ..+.++|.||-+.-.....   ....+..||..+++|+. ++ +|..+    ....++.++|+|.++.....   
T Consensus        93 ~~~~-~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---  164 (230)
T TIGR01640        93 PLKS-RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKD---  164 (230)
T ss_pred             cccC-CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCC---
Confidence            1112 2667899888886432211   12378999999999995 54 34322    23456678899988865432   


Q ss_pred             CCCccceEeeeecCCcccCCceeecCC-----CCCC--cceeEEEECCEEEEEeC
Q 016328          236 TPEVDHWSLAVKDGKPLEKEWRTEIPI-----PRGG--PHRACVVVDDRLLVIGG  283 (391)
Q Consensus       236 ~~~~~~~~~~~~~~d~~~~~W~~~~~~-----p~~~--~~~~~~~~~~~i~v~GG  283 (391)
                      ....+.|.++  +  ....+|+..-.+     +.-.  .....+..+++|++.-.
T Consensus       165 ~~~~~IWvl~--d--~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~  215 (230)
T TIGR01640       165 TNNFDLWVLN--D--AGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE  215 (230)
T ss_pred             CCcEEEEEEC--C--CCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence            1236778654  2  334569864222     2111  12345667888888765

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.18  E-value=5.7e-05  Score=66.63  Aligned_cols=92  Identities=20%  Similarity=0.307  Sum_probs=63.9

Q ss_pred             ceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeec-CCCCCCcc
Q 016328          190 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI-PIPRGGPH  268 (391)
Q Consensus       190 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~~~~  268 (391)
                      .....||+.+++++.+......-+...+..-+|++++.||..+.  ...+..|+.   +.+..+..|.+.+ .|..+|..
T Consensus        46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p---~~~~~~~~w~e~~~~m~~~RWY  120 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTP---CTSDGTCDWTESPNDMQSGRWY  120 (243)
T ss_pred             EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEec---CCCCCCCCceECcccccCCCcc
Confidence            33457999999999887555555555555678999999998653  222333331   1112356798775 58888988


Q ss_pred             eeEEEE-CCEEEEEeCCCC
Q 016328          269 RACVVV-DDRLLVIGGQEG  286 (391)
Q Consensus       269 ~~~~~~-~~~i~v~GG~~~  286 (391)
                      .++..+ ||+++|+||...
T Consensus       121 pT~~~L~DG~vlIvGG~~~  139 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNN  139 (243)
T ss_pred             ccceECCCCCEEEEeCcCC
Confidence            888766 889999999863

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.12  E-value=0.00066  Score=60.19  Aligned_cols=198  Identities=13%  Similarity=0.148  Sum_probs=112.4

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCC-cce-EEEEEeCC-----EEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMA-HSH-LGMVTDGR-----YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV  210 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~-r~~-~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~  210 (391)
                      ..+.++||.|++|..+++.+.+.. ... .....++.     +|..+....+..   ....++.|+..++.|+.+...+.
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~~Vys~~~~~Wr~~~~~~~   90 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEHQVYTLGSNSWRTIECSPP   90 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccEEEEEeCCCCccccccCCC
Confidence            358999999999999976543201 111 11111221     455554322111   14678999999999999874332


Q ss_pred             C-CCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCC----cceeEEEECCEEEEEeCCC
Q 016328          211 P-RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG----PHRACVVVDDRLLVIGGQE  285 (391)
Q Consensus       211 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~----~~~~~~~~~~~i~v~GG~~  285 (391)
                      . ......+.++|.||-+.-....     ...  ..+..||..+++|+...++|...    .....+.++|+|.++....
T Consensus        91 ~~~~~~~~v~~~G~lyw~~~~~~~-----~~~--~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~  163 (230)
T TIGR01640        91 HHPLKSRGVCINGVLYYLAYTLKT-----NPD--YFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK  163 (230)
T ss_pred             CccccCCeEEECCEEEEEEEECCC-----CCc--EEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecC
Confidence            1 1122367789999988743211     111  13556778899999522334322    1345677889988876543


Q ss_pred             CCCCcCCCCCccccCcCCceecCcEEEEc--CcCcEEEcCCCCC---CCCC--ceeeEEEECCEEEEEccccCCCCcccc
Q 016328          286 GDFMAKPGSPIFKCSRRNEVVYDDVYMLD--DEMKWKVLPSMPK---PDSH--IEFAWVLVNNSIVIVGGTTEKHPTTKK  358 (391)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d--~~~~W~~v~~~~~---~~~~--~~~~~~~~~~~l~i~GG~~~~~~~~~~  358 (391)
                      ...                  .-+||..+  .+..|+++-.++.   +...  .....+.-+++|++.... ...     
T Consensus       164 ~~~------------------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~-----  219 (230)
T TIGR01640       164 DTN------------------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP-----  219 (230)
T ss_pred             CCC------------------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc-----
Confidence            211                  13588885  4567988644432   1111  112335667888887753 111     


Q ss_pred             eeEecceEEEecCcc
Q 016328          359 MVLVGEIFQFNLNTL  373 (391)
Q Consensus       359 ~~~~~~v~~~d~~~~  373 (391)
                          .-+..||++++
T Consensus       220 ----~~~~~y~~~~~  230 (230)
T TIGR01640       220 ----FYIFYYNVGEN  230 (230)
T ss_pred             ----eEEEEEeccCC
Confidence                13888888764

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.11  E-value=0.0012  Score=58.17  Aligned_cols=161  Identities=14%  Similarity=0.109  Sum_probs=95.5

Q ss_pred             EEEEEeccCCCCCCcceeEEEECCCCC--------e---eeCCCCCCCCCcceEEEEEeC----CEEEEEeCccCCC---
Q 016328          123 LLYVFAGYGSIDYVHSHVDIYNFTDNT--------W---GGRFDMPREMAHSHLGMVTDG----RYIYVVTGQYGPQ---  184 (391)
Q Consensus       123 ~vyv~GG~~~~~~~~~~~~~yd~~~~~--------W---~~~~~~p~~~~r~~~~~~~~~----~~iyv~GG~~~~~---  184 (391)
                      .-+|-||....+.+.+++++.......        .   +.+.++|.  +|++|++.++.    ....+|||+.-.-   
T Consensus        40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q  117 (337)
T PF03089_consen   40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQ  117 (337)
T ss_pred             eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCccc
Confidence            445678888888777888887766443        1   11456766  89999987762    2577899974211   


Q ss_pred             --------CCCCcceeEEEeCCCCceE--ECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328          185 --------CRGPTAHTFVLDTETKKWQ--DLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK  254 (391)
Q Consensus       185 --------~~~~~~~~~~yd~~~~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~  254 (391)
                              ..+-...++..|++-.-.+  .++.+....+.|.+..-++.+|++||..-..-......|.+.+.-  +...
T Consensus       118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdL--llGS  195 (337)
T PF03089_consen  118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDL--LLGS  195 (337)
T ss_pred             cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEee--cCCC
Confidence                    0112466888888876554  345677888889999999999999998643322233444443211  1111


Q ss_pred             CceeecCCCCCCcceeEEE---ECCEEEEEeCCCCC
Q 016328          255 EWRTEIPIPRGGPHRACVV---VDDRLLVIGGQEGD  287 (391)
Q Consensus       255 ~W~~~~~~p~~~~~~~~~~---~~~~i~v~GG~~~~  287 (391)
                      -.....-++.+..-.++.+   -.++.+|+||+..+
T Consensus       196 P~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd  231 (337)
T PF03089_consen  196 PAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD  231 (337)
T ss_pred             ceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence            1111111233332222222   24678889999654

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.86  E-value=0.0022  Score=56.59  Aligned_cols=112  Identities=14%  Similarity=0.219  Sum_probs=71.3

Q ss_pred             EEEEEeCccCCCCCCCcceeEEEeCCCCc--------e---EECCCCCCCCCCceEEEE--CC--EEEEEccCCCCc-cC
Q 016328          173 YIYVVTGQYGPQCRGPTAHTFVLDTETKK--------W---QDLPPLPVPRYAPATQLW--RG--RLHVMGGSGENR-YT  236 (391)
Q Consensus       173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--------W---~~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~~~-~~  236 (391)
                      .-+|.||+..+...  .+.++........        .   ..+.+.|.+|++|++.++  .+  ..++|||++-.. -.
T Consensus        40 ~YlIHGGrTPNNEl--S~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q  117 (337)
T PF03089_consen   40 QYLIHGGRTPNNEL--SSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ  117 (337)
T ss_pred             eEEecCCcCCCccc--ccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence            45667888765433  5666666554322        1   223589999999999875  33  488999986321 12


Q ss_pred             CCccceEeeeec------CCcccCCce--eecCCCCCCcceeEEEECCEEEEEeCCCC
Q 016328          237 PEVDHWSLAVKD------GKPLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEG  286 (391)
Q Consensus       237 ~~~~~~~~~~~~------~d~~~~~W~--~~~~~p~~~~~~~~~~~~~~i~v~GG~~~  286 (391)
                      ..++.|+-.+.+      .|.+-.-.+  .++.+..+...|.+.+-+|.+|++||+.-
T Consensus       118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl  175 (337)
T PF03089_consen  118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSL  175 (337)
T ss_pred             cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEc
Confidence            345666654332      233333333  24666778888888889999999999863

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.79  E-value=0.023  Score=54.78  Aligned_cols=261  Identities=15%  Similarity=0.113  Sum_probs=134.6

Q ss_pred             HhheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCC----------CCCceeeEeecC-cccccccccccccc
Q 016328           28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGP----------QKGENIGVKTKK-DVVPKRILPATFQD   94 (391)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~----------r~~~g~~~~~~~-~~~~~~~~~~~~~~   94 (391)
                      .-++.++.+|+....      ..+.++|.++++  ....-...          +...+.++..+. +...   .+..+++
T Consensus        64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~l~a  134 (394)
T PRK11138         64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQVYA  134 (394)
T ss_pred             ccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc---CCCEEEE
Confidence            346779999997642      268899999887  33222110          101111111111 2211   2336788


Q ss_pred             cccccC--ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEEe
Q 016328           95 LPAPEL--KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus        95 ~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      +|..+.  .|+.-.+  .+ ...+.++.++.||+..+       ...+..+|+++.+  |+.-...|....+...+-++.
T Consensus       135 ld~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~  204 (394)
T PRK11138        135 LNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA  204 (394)
T ss_pred             EECCCCCCcccccCC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence            887655  6865322  11 12223556888888543       2358999998775  887433322101222233455


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCC--ceEECCCCCCC--------CCCceEEEECCEEEEEccCCCCccCCCcc
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVP--------RYAPATQLWRGRLHVMGGSGENRYTPEVD  240 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  240 (391)
                      ++.+|+..+         ...+..+|+++.  .|+.--..+..        ....+-++.++.+|+.+. ++       .
T Consensus       205 ~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g-------~  267 (394)
T PRK11138        205 FGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NG-------N  267 (394)
T ss_pred             CCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CC-------e
Confidence            777776432         245677888765  48743211111        111233467888888652 11       1


Q ss_pred             ceEeeeecCCccc--CCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-Cc-
Q 016328          241 HWSLAVKDGKPLE--KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE-  316 (391)
Q Consensus       241 ~~~~~~~~~d~~~--~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~-  316 (391)
                           ++++|+++  ..|+....  ..   ...++.+++||+....                       ..++.+| .+ 
T Consensus       268 -----l~ald~~tG~~~W~~~~~--~~---~~~~~~~~~vy~~~~~-----------------------g~l~ald~~tG  314 (394)
T PRK11138        268 -----LVALDLRSGQIVWKREYG--SV---NDFAVDGGRIYLVDQN-----------------------DRVYALDTRGG  314 (394)
T ss_pred             -----EEEEECCCCCEEEeecCC--Cc---cCcEEECCEEEEEcCC-----------------------CeEEEEECCCC
Confidence                 22223433  34765321  11   1346678899987532                       2388888 54 


Q ss_pred             -CcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          317 -MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       317 -~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                       ..|+.-. +. .+..  .+.++.+++||+....   +          .++.+|+++.+
T Consensus       315 ~~~W~~~~-~~-~~~~--~sp~v~~g~l~v~~~~---G----------~l~~ld~~tG~  356 (394)
T PRK11138        315 VELWSQSD-LL-HRLL--TAPVLYNGYLVVGDSE---G----------YLHWINREDGR  356 (394)
T ss_pred             cEEEcccc-cC-CCcc--cCCEEECCEEEEEeCC---C----------EEEEEECCCCC
Confidence             4686421 11 1111  2335678898874321   1          46666765544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.61  E-value=0.042  Score=52.95  Aligned_cols=246  Identities=13%  Similarity=0.100  Sum_probs=125.8

Q ss_pred             hheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccC--ceEE
Q 016328           29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL--KWEK  104 (391)
Q Consensus        29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~~  104 (391)
                      .++.++.+|+.+ .+     ..+.++|.++++  ...+...+  ..+...+.++...-. .....++.+|+.+.  .|+.
T Consensus       116 ~~v~~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~~--~~ssP~v~~~~v~v~-~~~g~l~ald~~tG~~~W~~  186 (394)
T PRK11138        116 VTVAGGKVYIGS-EK-----GQVYALNAEDGEVAWQTKVAGE--ALSRPVVSDGLVLVH-TSNGMLQALNESDGAVKWTV  186 (394)
T ss_pred             cEEECCEEEEEc-CC-----CEEEEEECCCCCCcccccCCCc--eecCCEEECCEEEEE-CCCCEEEEEEccCCCEeeee
Confidence            456688888754 22     268899999987  33322111  111111222211101 11236788888766  5876


Q ss_pred             ccCCCC--CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCC------CcceEEEEEeCCEE
Q 016328          105 MKAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREM------AHSHLGMVTDGRYI  174 (391)
Q Consensus       105 ~~~~p~--~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~------~r~~~~~~~~~~~i  174 (391)
                      -...|.  .+...+-++.++.+|+..+.       ..+..+|+.+.  .|+.-...|...      .....+-++.++.+
T Consensus       187 ~~~~~~~~~~~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v  259 (394)
T PRK11138        187 NLDVPSLTLRGESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV  259 (394)
T ss_pred             cCCCCcccccCCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence            433321  12223335567777775431       34778888876  487532222100      01123345678999


Q ss_pred             EEEeCccCCCCCCCcceeEEEeCCCCc--eEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc
Q 016328          175 YVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL  252 (391)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~  252 (391)
                      |+.+.         ...++++|+.+.+  |+.--  ..+   ...+..+++||+....        -..     +++|++
T Consensus       260 y~~~~---------~g~l~ald~~tG~~~W~~~~--~~~---~~~~~~~~~vy~~~~~--------g~l-----~ald~~  312 (394)
T PRK11138        260 YALAY---------NGNLVALDLRSGQIVWKREY--GSV---NDFAVDGGRIYLVDQN--------DRV-----YALDTR  312 (394)
T ss_pred             EEEEc---------CCeEEEEECCCCCEEEeecC--CCc---cCcEEECCEEEEEcCC--------CeE-----EEEECC
Confidence            98652         2467899998764  87532  111   1346678899987531        111     122233


Q ss_pred             --cCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcC--cEEEcCCCCC
Q 016328          253 --EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEM--KWKVLPSMPK  327 (391)
Q Consensus       253 --~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~--~W~~v~~~~~  327 (391)
                        +..|+.....  .+...+.++.+++||+... ++                      .++.+| .+.  .|+.  .+..
T Consensus       313 tG~~~W~~~~~~--~~~~~sp~v~~g~l~v~~~-~G----------------------~l~~ld~~tG~~~~~~--~~~~  365 (394)
T PRK11138        313 GGVELWSQSDLL--HRLLTAPVLYNGYLVVGDS-EG----------------------YLHWINREDGRFVAQQ--KVDS  365 (394)
T ss_pred             CCcEEEcccccC--CCcccCCEEECCEEEEEeC-CC----------------------EEEEEECCCCCEEEEE--EcCC
Confidence              3457642211  1122244567899887532 21                      377777 443  4654  2221


Q ss_pred             CCCCceeeEEEECCEEEEE
Q 016328          328 PDSHIEFAWVLVNNSIVIV  346 (391)
Q Consensus       328 ~~~~~~~~~~~~~~~l~i~  346 (391)
                      ...  ..+.++.+++||+.
T Consensus       366 ~~~--~s~P~~~~~~l~v~  382 (394)
T PRK11138        366 SGF--LSEPVVADDKLLIQ  382 (394)
T ss_pred             Ccc--eeCCEEECCEEEEE
Confidence            111  22346688888885

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.60  E-value=0.0062  Score=57.30  Aligned_cols=126  Identities=21%  Similarity=0.285  Sum_probs=80.1

Q ss_pred             EEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCC--ccceEee
Q 016328          168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE--VDHWSLA  245 (391)
Q Consensus       168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~~~~  245 (391)
                      ++.+++|+.++..         .....||+++..-...|.|+.+.....++.++++||++...........  ...|...
T Consensus        73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l  143 (342)
T PF07893_consen   73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL  143 (342)
T ss_pred             EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence            3358899988553         3367999999998888888887777778888999999987643211110  1133322


Q ss_pred             eec------CCcccCCceeecCCCCCCc-------ceeEEEE-CCEEEE-EeCCCCCCCcCCCCCccccCcCCceecCcE
Q 016328          246 VKD------GKPLEKEWRTEIPIPRGGP-------HRACVVV-DDRLLV-IGGQEGDFMAKPGSPIFKCSRRNEVVYDDV  310 (391)
Q Consensus       246 ~~~------~d~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~i~v-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (391)
                      .+.      .....-.|+.+++.|-...       -.+.+++ +..|+| .-+...                      -.
T Consensus       144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------------------GT  201 (342)
T PF07893_consen  144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------------------GT  201 (342)
T ss_pred             ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce----------------------EE
Confidence            222      1233446777776553222       1244566 667888 443310                      17


Q ss_pred             EEEc-CcCcEEEcCC
Q 016328          311 YMLD-DEMKWKVLPS  324 (391)
Q Consensus       311 ~~~d-~~~~W~~v~~  324 (391)
                      |.|| .+.+|+++..
T Consensus       202 ysfDt~~~~W~~~Gd  216 (342)
T PF07893_consen  202 YSFDTESHEWRKHGD  216 (342)
T ss_pred             EEEEcCCcceeeccc
Confidence            9999 8899999975

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.34  E-value=0.16  Score=48.60  Aligned_cols=211  Identities=13%  Similarity=0.090  Sum_probs=103.6

Q ss_pred             HhheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccC--ceE
Q 016328           28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL--KWE  103 (391)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~  103 (391)
                      +.++.++.+|+.+. +     ..+.+||+.+++  ....-.. +.. +.....+....-+ .....++.+|..+.  .|+
T Consensus        60 ~p~v~~~~v~v~~~-~-----g~v~a~d~~tG~~~W~~~~~~-~~~-~~p~v~~~~v~v~-~~~g~l~ald~~tG~~~W~  130 (377)
T TIGR03300        60 QPAVAGGKVYAADA-D-----GTVVALDAETGKRLWRVDLDE-RLS-GGVGADGGLVFVG-TEKGEVIALDAEDGKELWR  130 (377)
T ss_pred             ceEEECCEEEEECC-C-----CeEEEEEccCCcEeeeecCCC-Ccc-cceEEcCCEEEEE-cCCCEEEEEECCCCcEeee
Confidence            44677888887763 2     368899998887  2222211 111 1111112211111 12346788887654  586


Q ss_pred             EccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCCCcceEEEEEeCCEEEEEeCcc
Q 016328          104 KMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY  181 (391)
Q Consensus       104 ~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~  181 (391)
                      .-..  .+ ...+.+..++.+|+..+       ...+..+|+++.  .|+.-...+....+...+.+..++.+|+ |.. 
T Consensus       131 ~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~-  198 (377)
T TIGR03300       131 AKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA-  198 (377)
T ss_pred             eccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC-
Confidence            5321  11 11223445778887543       234889998866  4876432221001222334456676654 332 


Q ss_pred             CCCCCCCcceeEEEeCCCC--ceEECCCCCCCC--------CCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCc
Q 016328          182 GPQCRGPTAHTFVLDTETK--KWQDLPPLPVPR--------YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKP  251 (391)
Q Consensus       182 ~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~  251 (391)
                             ...+..+|+++.  .|+.--..+...        ...+.++.++.+|+.... +     ....++.     ..
T Consensus       199 -------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-g-----~l~a~d~-----~t  260 (377)
T TIGR03300       199 -------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-G-----RVAALDL-----RS  260 (377)
T ss_pred             -------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-C-----EEEEEEC-----CC
Confidence                   245788998765  486432212111        122334567888876421 1     1222221     12


Q ss_pred             ccCCceeecCCCCCCcceeEEEECCEEEEEe
Q 016328          252 LEKEWRTEIPIPRGGPHRACVVVDDRLLVIG  282 (391)
Q Consensus       252 ~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~G  282 (391)
                      -+..|+...  +.   ....++.+++||+..
T Consensus       261 G~~~W~~~~--~~---~~~p~~~~~~vyv~~  286 (377)
T TIGR03300       261 GRVLWKRDA--SS---YQGPAVDDNRLYVTD  286 (377)
T ss_pred             CcEEEeecc--CC---ccCceEeCCEEEEEC
Confidence            234476531  11   123456788888864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.21  E-value=0.22  Score=47.58  Aligned_cols=169  Identities=14%  Similarity=0.147  Sum_probs=85.2

Q ss_pred             heecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccC--ceEEc
Q 016328           30 ALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL--KWEKM  105 (391)
Q Consensus        30 ~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~  105 (391)
                      ++-++.+|+.. .++     .+..+|+.+++  ........  ..+.....++...-. .....++.+|+.+.  .|+.-
T Consensus       102 ~v~~~~v~v~~-~~g-----~l~ald~~tG~~~W~~~~~~~--~~~~p~v~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       102 GADGGLVFVGT-EKG-----EVIALDAEDGKELWRAKLSSE--VLSPPLVANGLVVVR-TNDGRLTALDAATGERLWTYS  172 (377)
T ss_pred             EEcCCEEEEEc-CCC-----EEEEEECCCCcEeeeeccCce--eecCCEEECCEEEEE-CCCCeEEEEEcCCCceeeEEc
Confidence            34466777543 333     68889998877  32222110  011111111211110 11335778887655  58754


Q ss_pred             cCCCC--CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCC---C---cceEEEEEeCCEEE
Q 016328          106 KAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREM---A---HSHLGMVTDGRYIY  175 (391)
Q Consensus       106 ~~~p~--~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~---~---r~~~~~~~~~~~iy  175 (391)
                      ...+.  .+...+.+..++.+|+ |..+      ..+..+|+.+.  .|+.-...+...   .   ....+.++.++.+|
T Consensus       173 ~~~~~~~~~~~~sp~~~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy  245 (377)
T TIGR03300       173 RVTPALTLRGSASPVIADGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY  245 (377)
T ss_pred             cCCCceeecCCCCCEEECCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence            32221  1223344556776554 3321      24888998776  486532222100   0   11223445688888


Q ss_pred             EEeCccCCCCCCCcceeEEEeCCCCc--eEECCCCCCCCCCceEEEECCEEEEEc
Q 016328          176 VVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMG  228 (391)
Q Consensus       176 v~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~G  228 (391)
                      +...         ...+++||+++.+  |+.-.  .   .....++.+++||+..
T Consensus       246 ~~~~---------~g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~  286 (377)
T TIGR03300       246 AVSY---------QGRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTD  286 (377)
T ss_pred             EEEc---------CCEEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEEC
Confidence            8642         2468889987654  76531  1   1223446788898874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.62  E-value=0.44  Score=41.95  Aligned_cols=208  Identities=21%  Similarity=0.291  Sum_probs=113.0

Q ss_pred             cccccccccC--ceEEccCCCCCccCce--EEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcce
Q 016328           91 TFQDLPAPEL--KWEKMKAAPVPRLDGA--AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSH  164 (391)
Q Consensus        91 ~~~~~d~~~~--~W~~~~~~p~~r~~~~--~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~  164 (391)
                      .+.++|+.+.  .|+.-  +..+.....  .+..++.+|+..+       ...+.++|+.+.+  |+.-.  +.+   ..
T Consensus         4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~---~~   69 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGP---IS   69 (238)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSC---GG
T ss_pred             EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--ccc---cc
Confidence            4567777554  58762  222233333  3447889999842       3459999997775  77643  321   11


Q ss_pred             EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc--eE-ECCCCCC--CCCCceEEEECCEEEEEccCCCCccCCCc
Q 016328          165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQ-DLPPLPV--PRYAPATQLWRGRLHVMGGSGENRYTPEV  239 (391)
Q Consensus       165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~-~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  239 (391)
                      ......++.||+...         ...++.+|.++.+  |+ .....+.  .+......+.++.+|+.... +     ..
T Consensus        70 ~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-----~l  134 (238)
T PF13360_consen   70 GAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-G-----KL  134 (238)
T ss_dssp             SGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-S-----EE
T ss_pred             ceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc-C-----cE
Confidence            124788999998862         2478999977664  98 4433232  23344455567777766531 0     11


Q ss_pred             cceEeeeecCCcc--cCCceeecCCCCCCc--------ceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCc
Q 016328          240 DHWSLAVKDGKPL--EKEWRTEIPIPRGGP--------HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  309 (391)
Q Consensus       240 ~~~~~~~~~~d~~--~~~W~~~~~~p~~~~--------~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (391)
                             +.+|++  ...|+.....+....        ....+..++.+|+..+..                       .
T Consensus       135 -------~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----------------------~  184 (238)
T PF13360_consen  135 -------VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-----------------------R  184 (238)
T ss_dssp             -------EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-----------------------S
T ss_pred             -------EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-----------------------e
Confidence                   112233  344665444443221        123334467888876542                       1


Q ss_pred             EEEEc-CcCc--EEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc--cc
Q 016328          310 VYMLD-DEMK--WKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV--SA  376 (391)
Q Consensus       310 v~~~d-~~~~--W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~--~~  376 (391)
                      ++.+| .+.+  |+.-  +..    ........++.||+.. .+            ..++.+|+++.+  |.
T Consensus       185 ~~~~d~~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~-~~------------~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  185 VVAVDLATGEKLWSKP--ISG----IYSLPSVDGGTLYVTS-SD------------GRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEE-TT------------TEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCEEEEec--CCC----ccCCceeeCCEEEEEe-CC------------CEEEEEECCCCCEEeE
Confidence            45557 5554  8442  221    1112345667777765 32            279999998776  64

...

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.38  E-value=0.091  Score=49.50  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCc----ceeEEE--EC--------CCCCeeeCCCC
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVH----SHVDIY--NF--------TDNTWGGRFDM  156 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~----~~~~~y--d~--------~~~~W~~~~~~  156 (391)
                      ....||..+..=..+|.++.+.....++.++++||++..........    ..+|.+  ++        ..-.|+.+++.
T Consensus        87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P  166 (342)
T PF07893_consen   87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP  166 (342)
T ss_pred             CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence            57799999987777788877777777788899999998764332110    045665  31        12258887764


Q ss_pred             CCCCCcc-----eEEEEEe-CCEEEEE-eCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          157 PREMAHS-----HLGMVTD-GRYIYVV-TGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       157 p~~~~r~-----~~~~~~~-~~~iyv~-GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      |-.....     -.+-+++ +..|||- -|..        .-.+.||.++.+|+...+
T Consensus       167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~Gd  216 (342)
T PF07893_consen  167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGD  216 (342)
T ss_pred             CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccc
Confidence            4321111     2344455 7789983 2211        247899999999999985

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.27  E-value=0.059  Score=48.98  Aligned_cols=108  Identities=12%  Similarity=0.115  Sum_probs=64.2

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC-C----CCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP-L----PVP  211 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~----~~~  211 (391)
                      ..+..||..+.+|..+..--.   -.-.++... +++||+.|-..-...  ....+-.||.++.+|+.++. .    |.+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~w~~~~~~~s~~ipgp   90 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQTWSSLGGGSSNSIPGP   90 (281)
T ss_pred             CEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCeeeecCCcccccCCCc
Confidence            469999999999999754321   112344444 778888775543331  25678899999999998875 2    333


Q ss_pred             CCCceEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecC
Q 016328          212 RYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP  261 (391)
Q Consensus       212 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~  261 (391)
                      ......... .+++++.|....  -......|+         ..+|+.+..
T Consensus        91 v~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d---------Gs~W~~i~~  130 (281)
T PF12768_consen   91 VTALTFISNDGSNFWVAGRSAN--GSTFLMKYD---------GSSWSSIGS  130 (281)
T ss_pred             EEEEEeeccCCceEEEeceecC--CCceEEEEc---------CCceEeccc
Confidence            322222222 346777776421  122233343         667887654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.24  E-value=0.19  Score=45.64  Aligned_cols=109  Identities=15%  Similarity=0.124  Sum_probs=61.8

Q ss_pred             cceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecC-----C
Q 016328          189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP-----I  262 (391)
Q Consensus       189 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-----~  262 (391)
                      ...+..||+.+.+|+.+..--... -..+... +++||+.|-......    ..  ..+-.||.++.+|+.++.     +
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~----~~--~~la~yd~~~~~w~~~~~~~s~~i   87 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGT----NS--SNLATYDFKNQTWSSLGGGSSNSI   87 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCC----Cc--eeEEEEecCCCeeeecCCcccccC
Confidence            578999999999999887442221 2233333 778888875543221    11  112334578999987755     2


Q ss_pred             CCCCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEcCcCcEEEcCC
Q 016328          263 PRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS  324 (391)
Q Consensus       263 p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~W~~v~~  324 (391)
                      |.+......... .+.+++.|.....                   ..-+..| ...+|+.+..
T Consensus        88 pgpv~a~~~~~~d~~~~~~aG~~~~g-------------------~~~l~~~-dGs~W~~i~~  130 (281)
T PF12768_consen   88 PGPVTALTFISNDGSNFWVAGRSANG-------------------STFLMKY-DGSSWSSIGS  130 (281)
T ss_pred             CCcEEEEEeeccCCceEEEeceecCC-------------------CceEEEE-cCCceEeccc
Confidence            333211111112 3357777665211                   2237778 4668999875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.06  E-value=0.93  Score=39.82  Aligned_cols=160  Identities=21%  Similarity=0.228  Sum_probs=86.8

Q ss_pred             eEeeecCCCCe--eecCCCCCCCCcee--eEeecCcccccccccccccccccccC--ceEEccCCCCCccCceEEEECCE
Q 016328           50 IASNWSPYHNS--IILPNNGPQKGENI--GVKTKKDVVPKRILPATFQDLPAPEL--KWEKMKAAPVPRLDGAAIQIKNL  123 (391)
Q Consensus        50 ~~~~~d~~~~~--~~lp~~~~r~~~g~--~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~  123 (391)
                      .+..+|+.+++  ...+.. +......  ....++..... .....++++|+.+.  .|+.-.  +.+ ........++.
T Consensus         4 ~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~--~~~-~~~~~~~~~~~   78 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVA-SGDGNLYALDAKTGKVLWRFDL--PGP-ISGAPVVDGGR   78 (238)
T ss_dssp             EEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEE-ETTSEEEEEETTTSEEEEEEEC--SSC-GGSGEEEETTE
T ss_pred             EEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEE-cCCCEEEEEECCCCCEEEEeec--ccc-ccceeeecccc
Confidence            57888888877  444331 1122222  23233322222 23447889998665  576543  222 12224677889


Q ss_pred             EEEEeccCCCCCCcceeEEEECCCCC--ee-eCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          124 LYVFAGYGSIDYVHSHVDIYNFTDNT--WG-GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       124 vyv~GG~~~~~~~~~~~~~yd~~~~~--W~-~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ||+...       .+.+..+|..+.+  |+ .....+....+.....++.++.+|+...         ...+..+|+++.
T Consensus        79 v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~l~~~d~~tG  142 (238)
T PF13360_consen   79 VYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---------SGKLVALDPKTG  142 (238)
T ss_dssp             EEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---------CSEEEEEETTTT
T ss_pred             cccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---------cCcEEEEecCCC
Confidence            998872       1259999977764  98 4433222112334455556888877653         367889999876


Q ss_pred             c--eEECCCCCCCCC--------CceEEEECCEEEEEccC
Q 016328          201 K--WQDLPPLPVPRY--------APATQLWRGRLHVMGGS  230 (391)
Q Consensus       201 ~--W~~~~~~~~~r~--------~~~~~~~~~~iyv~GG~  230 (391)
                      +  |+.-...+....        ....+..++.+|+..+.
T Consensus       143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (238)
T PF13360_consen  143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD  182 (238)
T ss_dssp             EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT
T ss_pred             cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC
Confidence            5  776443332111        12333446788888653

...

>PRK13684 Ycf48-like protein; Provisional

Probab=94.90  E-value=3.4  Score=38.80  Aligned_cols=199  Identities=12%  Similarity=0.144  Sum_probs=97.3

Q ss_pred             ccCceEEccCC-CCCccCceEEEEC-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEE
Q 016328           98 PELKWEKMKAA-PVPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIY  175 (391)
Q Consensus        98 ~~~~W~~~~~~-p~~r~~~~~~~~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iy  175 (391)
                      ...+|+++... ..+.....+..++ +.+|+.|..       ..+++=+-.-++|+.+.....   -..+.+....+..|
T Consensus       117 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~---g~~~~i~~~~~g~~  186 (334)
T PRK13684        117 GGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAA---GVVRNLRRSPDGKY  186 (334)
T ss_pred             CCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCc---ceEEEEEECCCCeE
Confidence            34589988532 2222333344443 456666532       235555556679998754322   23344555444445


Q ss_pred             EEeCccCCCCCCCcceeEE-EeCCCCceEECCCCCCCCCCceEEE-ECCEEEEEccCCCCccCCCccceEeeeecCCccc
Q 016328          176 VVTGQYGPQCRGPTAHTFV-LDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE  253 (391)
Q Consensus       176 v~GG~~~~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~  253 (391)
                      +..|..+        .++. .|....+|+.+.. +..+...+++. -++.++++|........ +           +..-
T Consensus       187 v~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~~~~~-s-----------~d~G  245 (334)
T PRK13684        187 VAVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQIRFN-D-----------PDDL  245 (334)
T ss_pred             EEEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCEEEEc-c-----------CCCC
Confidence            5444333        2222 3455578998854 44444444443 46778888753211010 0           1234


Q ss_pred             CCceeecCC-CCCCcc-eeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEE-cCcCcEEEcCCCCCCC
Q 016328          254 KEWRTEIPI-PRGGPH-RACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-DDEMKWKVLPSMPKPD  329 (391)
Q Consensus       254 ~~W~~~~~~-p~~~~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~~W~~v~~~~~~~  329 (391)
                      ..|+.+... ...... ++.+.. ++.+++.|... .                      ++.- |...+|+.+.......
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-~----------------------v~~S~d~G~tW~~~~~~~~~~  302 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-T----------------------LLVSKDGGKTWEKDPVGEEVP  302 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCEEEEcCCC-e----------------------EEEeCCCCCCCeECCcCCCCC
Confidence            577754321 111111 223333 56788876532 1                      3332 3678999975322111


Q ss_pred             CCceeeEEEECCEEEEEcccc
Q 016328          330 SHIEFAWVLVNNSIVIVGGTT  350 (391)
Q Consensus       330 ~~~~~~~~~~~~~l~i~GG~~  350 (391)
                      ......+..-++++|++|...
T Consensus       303 ~~~~~~~~~~~~~~~~~G~~G  323 (334)
T PRK13684        303 SNFYKIVFLDPEKGFVLGQRG  323 (334)
T ss_pred             cceEEEEEeCCCceEEECCCc
Confidence            122222233467888877654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.89  E-value=0.29  Score=46.39  Aligned_cols=146  Identities=17%  Similarity=0.218  Sum_probs=84.2

Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCC---CCCCceEEEECCEEEEEccCCCCccCCCccceEeeee
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV---PRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  247 (391)
                      ...+.+.+|.++      .-.++..|=+++.  .+..+..   |......+..+....+++|+..            .+|
T Consensus       224 ~~plllvaG~d~------~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk------------y~y  283 (514)
T KOG2055|consen  224 TAPLLLVAGLDG------TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK------------YLY  283 (514)
T ss_pred             CCceEEEecCCC------cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccce------------EEE
Confidence            457888888876      4567777777776  4444332   2222222233343677776532            234


Q ss_pred             cCCcccCCceeecCC---CCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC
Q 016328          248 DGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP  323 (391)
Q Consensus       248 ~~d~~~~~W~~~~~~---p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~  323 (391)
                      .||.++.+-+.+.++   +......-.+..++.++++-|.++.                      |+.+. .+++|..  
T Consensus       284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~----------------------I~lLhakT~eli~--  339 (514)
T KOG2055|consen  284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH----------------------IHLLHAKTKELIT--  339 (514)
T ss_pred             EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce----------------------EEeehhhhhhhhh--
Confidence            555667777766553   2222222345667778888887654                      77777 7777744  


Q ss_pred             CCCCCCCCceeeEEEEC-CEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          324 SMPKPDSHIEFAWVLVN-NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       324 ~~~~~~~~~~~~~~~~~-~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      .+..+-.-...+ ...+ ..|++.||+.             +||.+|+.+..
T Consensus       340 s~KieG~v~~~~-fsSdsk~l~~~~~~G-------------eV~v~nl~~~~  377 (514)
T KOG2055|consen  340 SFKIEGVVSDFT-FSSDSKELLASGGTG-------------EVYVWNLRQNS  377 (514)
T ss_pred             eeeeccEEeeEE-EecCCcEEEEEcCCc-------------eEEEEecCCcc
Confidence            332222211222 2234 4677777765             79999998776

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=94.68  E-value=3.2  Score=37.45  Aligned_cols=139  Identities=17%  Similarity=0.124  Sum_probs=64.5

Q ss_pred             CEEEEecCCCCcccceeEeeecCCCCe--eecCC-CCCCCCceeeEeecC-cc-cccccccccccccccccCceEE-ccC
Q 016328           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPN-NGPQKGENIGVKTKK-DV-VPKRILPATFQDLPAPELKWEK-MKA  107 (391)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~-~~~r~~~g~~~~~~~-~~-~~~~~~~~~~~~~d~~~~~W~~-~~~  107 (391)
                      +.+|+.++.++     .+..||+.+++  ..+.. ..++   ++.....+ .. ... .....+..+|..+.+... ++.
T Consensus         1 ~~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~-~~~~~v~~~d~~~~~~~~~~~~   71 (300)
T TIGR03866         1 EKAYVSNEKDN-----TISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCA-SDSDTIQVIDLATGEVIGTLPS   71 (300)
T ss_pred             CcEEEEecCCC-----EEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEE-CCCCeEEEEECCCCcEEEeccC
Confidence            35677777555     77888988776  33322 1122   22221111 11 111 112356677877665433 221


Q ss_pred             CCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCC
Q 016328          108 APVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQ  184 (391)
Q Consensus       108 ~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~  184 (391)
                      ...+   ..++..  ++.+|+.++.+      ..+.+||+.+.+-.  ..++.+  ....+++. -++++++++..+   
T Consensus        72 ~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~--~~~~~~--~~~~~~~~~~dg~~l~~~~~~---  135 (300)
T TIGR03866        72 GPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVL--AEIPVG--VEPEGMAVSPDGKIVVNTSET---  135 (300)
T ss_pred             CCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEE--eEeeCC--CCcceEEECCCCCEEEEEecC---
Confidence            1111   122222  34677665432      34888998875422  122211  11122333 356666665432   


Q ss_pred             CCCCcceeEEEeCCCCc
Q 016328          185 CRGPTAHTFVLDTETKK  201 (391)
Q Consensus       185 ~~~~~~~~~~yd~~~~~  201 (391)
                          .+.+..||..+.+
T Consensus       136 ----~~~~~~~d~~~~~  148 (300)
T TIGR03866       136 ----TNMAHFIDTKTYE  148 (300)
T ss_pred             ----CCeEEEEeCCCCe
Confidence                1345567876654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.33  E-value=3.1  Score=39.70  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=70.6

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC-CCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      -.+.+++|.+..    -.++..|-++|.  .+.++.- .+|-.....+..+....+++|.        ..-++.||.++.
T Consensus       225 ~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~a  290 (514)
T KOG2055|consen  225 APLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLETA  290 (514)
T ss_pred             CceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeecccc
Confidence            468888888753    236666666665  3333322 1111223333344446667664        467899999999


Q ss_pred             ceEECCCCC--CCCCCceE-EEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCE
Q 016328          201 KWQDLPPLP--VPRYAPAT-QLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDR  277 (391)
Q Consensus       201 ~W~~~~~~~--~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~  277 (391)
                      +-+++.++-  ..+.-+.. +...+.++++-|..+.-+     ..       ...+++|-..-.++..........-+..
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~-----lL-------hakT~eli~s~KieG~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH-----LL-------HAKTKELITSFKIEGVVSDFTFSSDSKE  358 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEE-----ee-------hhhhhhhhheeeeccEEeeEEEecCCcE
Confidence            988887543  11222222 234455666666543211     11       1446666544444433322222233445


Q ss_pred             EEEEeCC
Q 016328          278 LLVIGGQ  284 (391)
Q Consensus       278 i~v~GG~  284 (391)
                      |++.||.
T Consensus       359 l~~~~~~  365 (514)
T KOG2055|consen  359 LLASGGT  365 (514)
T ss_pred             EEEEcCC
Confidence            7777775

>PRK13684 Ycf48-like protein; Provisional

Probab=94.18  E-value=5  Score=37.67  Aligned_cols=157  Identities=11%  Similarity=0.016  Sum_probs=74.4

Q ss_pred             ccCceEEccC-CCCCcc-CceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCC-CCCCCcceEEEEEeCCEE
Q 016328           98 PELKWEKMKA-APVPRL-DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYI  174 (391)
Q Consensus        98 ~~~~W~~~~~-~p~~r~-~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~~~r~~~~~~~~~~~i  174 (391)
                      .-.+|++... +|.... ..++...++..|++|..       ..+++=+-.-.+|+.+... ..| .......+.-++.+
T Consensus        74 gG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~-~~~~~i~~~~~~~~  145 (334)
T PRK13684         74 GGETWEERSLDLPEENFRLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLP-GSPYLITALGPGTA  145 (334)
T ss_pred             CCCCceECccCCcccccceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCC-CCceEEEEECCCcc
Confidence            3458998643 332222 22333345566766521       1133322234589987521 111 11122233334556


Q ss_pred             EEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328          175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK  254 (391)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~  254 (391)
                      |+.|.         ...+++=+-.-++|+.+.... .-..+.+....+..+++.|..+.-+.           ..|....
T Consensus       146 ~~~g~---------~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~i~~-----------s~~~gg~  204 (334)
T PRK13684        146 EMATN---------VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGNFYS-----------TWEPGQT  204 (334)
T ss_pred             eeeec---------cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCceEEE-----------EcCCCCC
Confidence            66653         234566666678999886433 22334444444444444443322111           0123346


Q ss_pred             CceeecCCCCCCcceeEE-EECCEEEEEeCC
Q 016328          255 EWRTEIPIPRGGPHRACV-VVDDRLLVIGGQ  284 (391)
Q Consensus       255 ~W~~~~~~p~~~~~~~~~-~~~~~i~v~GG~  284 (391)
                      +|+.+........ .+++ .-+++++++|..
T Consensus       205 tW~~~~~~~~~~l-~~i~~~~~g~~~~vg~~  234 (334)
T PRK13684        205 AWTPHQRNSSRRL-QSMGFQPDGNLWMLARG  234 (334)
T ss_pred             eEEEeeCCCcccc-eeeeEcCCCCEEEEecC
Confidence            7887754332222 2333 346778888653

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=93.42  E-value=5.3  Score=35.42  Aligned_cols=185  Identities=17%  Similarity=0.172  Sum_probs=81.9

Q ss_pred             cccCceEE--ccCCCC-------CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCC-----CCCC--CC
Q 016328           97 APELKWEK--MKAAPV-------PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF-----DMPR--EM  160 (391)
Q Consensus        97 ~~~~~W~~--~~~~p~-------~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-----~~p~--~~  160 (391)
                      ...+.|++  |+..|.       .-.-|+.+.+++.-|.+|=.++.-....--..|-+  +.|..-.     ..+.  ..
T Consensus       112 F~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs--~~~~sp~~~vrr~i~sey~~  189 (367)
T PF12217_consen  112 FHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFS--DAFASPGVFVRRIIPSEYER  189 (367)
T ss_dssp             STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEET--TTTT-TT--EEEE--GGG-T
T ss_pred             cccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEec--ccccCCcceeeeechhhhcc
Confidence            34567865  455544       33458888998888888755433222111122222  2232211     0111  11


Q ss_pred             CcceEEEEEeCCEEEEEe-CccCCCCCCCcceeEEEeCCCCceEECC-CCCCCCCCceEEEECCEEEEEccCCC------
Q 016328          161 AHSHLGMVTDGRYIYVVT-GQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRGRLHVMGGSGE------  232 (391)
Q Consensus       161 ~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~------  232 (391)
                      .-...++-.+++.||+.- |..+..   .-+.+.+-+.....|+.+. +-..-....-.+..++.||+||-...      
T Consensus       190 ~AsEPCvkyY~g~LyLtTRgt~~~~---~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~  266 (367)
T PF12217_consen  190 NASEPCVKYYDGVLYLTTRGTLPTN---PGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEG  266 (367)
T ss_dssp             TEEEEEEEEETTEEEEEEEES-TTS------EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SST
T ss_pred             ccccchhhhhCCEEEEEEcCcCCCC---CcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecccccccccc
Confidence            233456777899999974 322222   2577888888889999875 22222333445678999999985321      


Q ss_pred             ----CccC---CCccceEeeeecCCcccCCceeecC------CCCCCcceeE-EEECCEE-EEEeCCCC
Q 016328          233 ----NRYT---PEVDHWSLAVKDGKPLEKEWRTEIP------IPRGGPHRAC-VVVDDRL-LVIGGQEG  286 (391)
Q Consensus       233 ----~~~~---~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~~~~~~~-~~~~~~i-~v~GG~~~  286 (391)
                          ++|.   |.+-.-...+.++.++.-+|..+..      ......+.+. |+.++-| |+|||.+.
T Consensus       267 G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~  335 (367)
T PF12217_consen  267 GEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF  335 (367)
T ss_dssp             T-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred             CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCccc
Confidence                1221   1111112223444567777876532      2223333344 4557765 56899863

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.34  E-value=5.7  Score=35.55  Aligned_cols=182  Identities=16%  Similarity=0.190  Sum_probs=95.2

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEEC-----CCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEE
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNF-----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL  195 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~-----~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y  195 (391)
                      ++++|++.+....     .++.|.-     ..++....-.||.  +-.+.+.++++|.+|---.        ..+++.+|
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~GtG~vVYngslYY~~~--------~s~~Ivky   94 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGTGHVVYNGSLYYNKY--------NSRNIVKY   94 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccCCeEEECCcEEEEec--------CCceEEEE
Confidence            4589999887543     3555532     2333333334544  3345667788998887522        27899999


Q ss_pred             eCCCCceE---ECCCCC------CCCCC---ceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc----cCCceee
Q 016328          196 DTETKKWQ---DLPPLP------VPRYA---PATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL----EKEWRTE  259 (391)
Q Consensus       196 d~~~~~W~---~~~~~~------~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~----~~~W~~~  259 (391)
                      |+.+++=.   .++...      .....   .-.++-.+-|+|+=...+..       -.+.+...||.    ..+|.. 
T Consensus        95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-------g~ivvskld~~tL~v~~tw~T-  166 (250)
T PF02191_consen   95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-------GNIVVSKLDPETLSVEQTWNT-  166 (250)
T ss_pred             ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-------CcEEEEeeCcccCceEEEEEe-
Confidence            99988744   444211      11111   22334445577764433211       11334444554    344554 


Q ss_pred             cCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEE
Q 016328          260 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVL  338 (391)
Q Consensus       260 ~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~  338 (391)
                       +.++...+ .+.++=|.||++...+...                  ..-.+.|| .+++=..+ .++.+......+.+.
T Consensus       167 -~~~k~~~~-naFmvCGvLY~~~s~~~~~------------------~~I~yafDt~t~~~~~~-~i~f~~~~~~~~~l~  225 (250)
T PF02191_consen  167 -SYPKRSAG-NAFMVCGVLYATDSYDTRD------------------TEIFYAFDTYTGKEEDV-SIPFPNPYGNISMLS  225 (250)
T ss_pred             -ccCchhhc-ceeeEeeEEEEEEECCCCC------------------cEEEEEEECCCCceece-eeeeccccCceEeee
Confidence             33443332 3455667889987765331                  11257888 55544432 344444333344444


Q ss_pred             E---CCEEEEE
Q 016328          339 V---NNSIVIV  346 (391)
Q Consensus       339 ~---~~~l~i~  346 (391)
                      .   +.+||+.
T Consensus       226 YNP~dk~LY~w  236 (250)
T PF02191_consen  226 YNPRDKKLYAW  236 (250)
T ss_pred             ECCCCCeEEEE
Confidence            4   3567764

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.42  E-value=6.3  Score=35.39  Aligned_cols=152  Identities=13%  Similarity=0.137  Sum_probs=83.4

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVP  111 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~  111 (391)
                      .+.||+.|-      ....-+.||.++. ...|.+.--...|.++--.+.+--..+..+.+...|+.+..=+.++ .|.+
T Consensus       158 ~G~lWFt~q------~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p-~P~~  230 (353)
T COG4257         158 WGNLWFTGQ------IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVP-QPNA  230 (353)
T ss_pred             CccEEEeec------cccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceec-CCCc
Confidence            356777764      1233478999988 4444432223356655544433333344456667777766333332 2222


Q ss_pred             ccCce-EEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCC
Q 016328          112 RLDGA-AIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP  188 (391)
Q Consensus       112 r~~~~-~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  188 (391)
                      ....+ -+..  .+++++.      .....++.+|||.+.+|.+- +||..-+|....-+--.++++..-        ..
T Consensus       231 ~~~gsRriwsdpig~~wit------twg~g~l~rfdPs~~sW~ey-pLPgs~arpys~rVD~~grVW~se--------a~  295 (353)
T COG4257         231 LKAGSRRIWSDPIGRAWIT------TWGTGSLHRFDPSVTSWIEY-PLPGSKARPYSMRVDRHGRVWLSE--------AD  295 (353)
T ss_pred             ccccccccccCccCcEEEe------ccCCceeeEeCcccccceee-eCCCCCCCcceeeeccCCcEEeec--------cc
Confidence            11111 1111  2456664      11234699999999999985 344322343333333445666631        12


Q ss_pred             cceeEEEeCCCCceEECC
Q 016328          189 TAHTFVLDTETKKWQDLP  206 (391)
Q Consensus       189 ~~~~~~yd~~~~~W~~~~  206 (391)
                      .+.+.+|||++.+.+.++
T Consensus       296 agai~rfdpeta~ftv~p  313 (353)
T COG4257         296 AGAIGRFDPETARFTVLP  313 (353)
T ss_pred             cCceeecCcccceEEEec
Confidence            677899999999988765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=91.41  E-value=6.6  Score=34.82  Aligned_cols=86  Identities=21%  Similarity=0.123  Sum_probs=51.6

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      ++.+|+.--.      ...++++|+.+++-+.+. .+.     ..+++.  -++.+|+...          .....+|+.
T Consensus        11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~----------~~~~~~d~~   68 (246)
T PF08450_consen   11 DGRLYWVDIP------GGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS----------GGIAVVDPD   68 (246)
T ss_dssp             TTEEEEEETT------TTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------TCEEEEETT
T ss_pred             CCEEEEEEcC------CCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------CceEEEecC
Confidence            4677877322      346999999988765532 221     234444  3788988853          334567999


Q ss_pred             CCceEECCCCC-----CCCCCceEEEECCEEEEEc
Q 016328          199 TKKWQDLPPLP-----VPRYAPATQLWRGRLHVMG  228 (391)
Q Consensus       199 ~~~W~~~~~~~-----~~r~~~~~~~~~~~iyv~G  228 (391)
                      +.+++.+...+     ..+..-.++--++.||+--
T Consensus        69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~  103 (246)
T PF08450_consen   69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD  103 (246)
T ss_dssp             TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred             CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence            99998886542     2233333344577888764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=91.05  E-value=5.6  Score=35.27  Aligned_cols=103  Identities=13%  Similarity=0.078  Sum_probs=58.5

Q ss_pred             ccccccccccCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC---CCCcce
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR---EMAHSH  164 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~~~r~~  164 (391)
                      ..++.+++.+..-+... .+.   -.+++..  ++.+|+....        ...++|+.+++++.+...+.   +..+.+
T Consensus        22 ~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~N   89 (246)
T PF08450_consen   22 GRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPN   89 (246)
T ss_dssp             TEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred             CEEEEEECCCCeEEEEe-cCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence            46778888776543322 222   2333333  6788887642        25667999999988765531   234445


Q ss_pred             EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEEC
Q 016328          165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL  205 (391)
Q Consensus       165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~  205 (391)
                      -.++.-++.||+.--............++++++. .+.+.+
T Consensus        90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~  129 (246)
T PF08450_consen   90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV  129 (246)
T ss_dssp             EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred             eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence            4555567889886422221111011679999998 555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.00  E-value=7.3  Score=37.46  Aligned_cols=174  Identities=17%  Similarity=0.212  Sum_probs=84.9

Q ss_pred             ECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC--CCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          120 IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR--EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       120 ~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      .++.+++.|+-+.      -+..+|..+.. .. ..+..  .--| +.++...+++|++.||+++..        -.||.
T Consensus       121 ~d~t~l~s~sDd~------v~k~~d~s~a~-v~-~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~v--------rl~Dt  183 (487)
T KOG0310|consen  121 QDNTMLVSGSDDK------VVKYWDLSTAY-VQ-AELSGHTDYVR-CGDISPANDHIVVTGSYDGKV--------RLWDT  183 (487)
T ss_pred             cCCeEEEecCCCc------eEEEEEcCCcE-EE-EEecCCcceeE-eeccccCCCeEEEecCCCceE--------EEEEe
Confidence            4788999887542      13344544443 22 11211  1012 234445678999999998743        46887


Q ss_pred             CCC-ceEECCCCCCCCCCceEE-EECCE-EEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEE
Q 016328          198 ETK-KWQDLPPLPVPRYAPATQ-LWRGR-LHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV  274 (391)
Q Consensus       198 ~~~-~W~~~~~~~~~r~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~  274 (391)
                      .+. .|..  .+.....--.+. +-++. |.-.||       +.+.+||+.      ...  +.+..+..-....+|..+
T Consensus       184 R~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~------~G~--qll~~~~~H~KtVTcL~l  246 (487)
T KOG0310|consen  184 RSLTSRVV--ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLT------TGG--QLLTSMFNHNKTVTCLRL  246 (487)
T ss_pred             ccCCceeE--EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEec------CCc--eehhhhhcccceEEEEEe
Confidence            776 3432  222211111222 22334 444444       357888863      000  011111100001122222


Q ss_pred             --CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEcCcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccC
Q 016328          275 --DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTE  351 (391)
Q Consensus       275 --~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~  351 (391)
                        ++.=++-||.++.                      +-.|| +..|+.+..+..|-.-...+ +..+++-.++|+.++
T Consensus       247 ~s~~~rLlS~sLD~~----------------------VKVfd-~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  247 ASDSTRLLSGSLDRH----------------------VKVFD-TTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNG  301 (487)
T ss_pred             ecCCceEeecccccc----------------------eEEEE-ccceEEEEeeecccceeeEE-ecCCCceEEEecccc
Confidence              4466677776643                      45554 34577776654443333333 445678888888764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=90.82  E-value=8.3  Score=33.93  Aligned_cols=113  Identities=17%  Similarity=0.234  Sum_probs=64.0

Q ss_pred             CeeeCCCCCC---CCCcce-EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE--CC
Q 016328          149 TWGGRFDMPR---EMAHSH-LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RG  222 (391)
Q Consensus       149 ~W~~~~~~p~---~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~  222 (391)
                      -|+...||..   ++|.-+ ..+..-.|.|+..||         -..+++.|.++.+-+..-. -..-+-|+++.-  ++
T Consensus       100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---------D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen  100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---------DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhcCccccCcccCCccceeEeccCCCcEEEecC---------CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCc
Confidence            4877666544   223222 233335788998887         4678999999998776421 233455666653  33


Q ss_pred             EEEEEccCCCCccCCCccceEeeeecCCcccCCceee------cCCCCCCc--ceeEEEECCEEEEEeCC
Q 016328          223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE------IPIPRGGP--HRACVVVDDRLLVIGGQ  284 (391)
Q Consensus       223 ~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~------~~~p~~~~--~~~~~~~~~~i~v~GG~  284 (391)
                      +| +.|+.++     .+..|+.       ++.+=..+      +.+.|+..  -.++...+...+|+||-
T Consensus       170 qi-lsG~EDG-----tvRvWd~-------kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG  226 (325)
T KOG0649|consen  170 QI-LSGAEDG-----TVRVWDT-------KTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG  226 (325)
T ss_pred             ce-eecCCCc-----cEEEEec-------cccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence            33 3444433     4677773       34433322      22333222  23677778888888875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=90.80  E-value=18  Score=35.58  Aligned_cols=62  Identities=15%  Similarity=0.243  Sum_probs=39.6

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      ..++++|+.+++-+.+...+.  ........-.+.+|++....++      ..+++.+|.++.+.+.+..
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~  303 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR  303 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence            459999999887777665543  1222233333455665543322      4679999999998887764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=90.40  E-value=13  Score=33.39  Aligned_cols=66  Identities=15%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCce
Q 016328          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (391)
Q Consensus       123 ~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (391)
                      ++|+.++.+      ..+.+||+.+++-...-..... .+ .......+..+|+.++.        ...+..||+.+.+.
T Consensus         2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~-~~-~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~~   65 (300)
T TIGR03866         2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQR-PR-GITLSKDGKLLYVCASD--------SDTIQVIDLATGEV   65 (300)
T ss_pred             cEEEEecCC------CEEEEEECCCCceEEEEECCCC-CC-ceEECCCCCEEEEEECC--------CCeEEEEECCCCcE
Confidence            567777654      3588899887754332121111 12 11222223467777653        35678899988765


Q ss_pred             EE
Q 016328          203 QD  204 (391)
Q Consensus       203 ~~  204 (391)
                      ..
T Consensus        66 ~~   67 (300)
T TIGR03866        66 IG   67 (300)
T ss_pred             EE
Confidence            43

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=89.78  E-value=21  Score=34.82  Aligned_cols=62  Identities=13%  Similarity=0.215  Sum_probs=38.1

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      ..++++|+.+++-+.+...+.  ..........+.+|++....++      ..+++.+|+.+.+-+.+..
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g--~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~  289 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRG--INGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN  289 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCC--CccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence            458999999888777765543  1122222233446655433222      3679999999888776653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=89.52  E-value=18  Score=35.32  Aligned_cols=201  Identities=14%  Similarity=0.172  Sum_probs=104.2

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeC-------CCCCCCCCcceEEEEEe-------CCEEEEEeCccCCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR-------FDMPREMAHSHLGMVTD-------GRYIYVVTGQYGPQCR  186 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-------~~~p~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~  186 (391)
                      ++.|+|+.|.       ...-+||-+.-+|.+.       -+|..  . .+|.+.+.       +...|+.-+.++.   
T Consensus       226 g~~iLvvsg~-------aqakl~DRdG~~~~e~~KGDQYI~Dm~n--T-KGHia~lt~g~whP~~k~~FlT~s~Dgt---  292 (641)
T KOG0772|consen  226 GDQILVVSGS-------AQAKLLDRDGFEIVEFSKGDQYIRDMYN--T-KGHIAELTCGCWHPDNKEEFLTCSYDGT---  292 (641)
T ss_pred             CCeEEEEecC-------cceeEEccCCceeeeeeccchhhhhhhc--c-CCceeeeeccccccCcccceEEecCCCc---
Confidence            6788888885       2356778777777663       23333  2 23333332       2346666665542   


Q ss_pred             CCcceeEEEeCCCCceEECC--CCCCCCCCceEEEE--CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCC
Q 016328          187 GPTAHTFVLDTETKKWQDLP--PLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI  262 (391)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~  262 (391)
                         -.+|-.+-...+-+.+.  ++...|...+.|.+  ++++ |.+|+.+    .++..|+         ...|..-+.+
T Consensus       293 ---lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D----GSIQ~W~---------~~~~~v~p~~  355 (641)
T KOG0772|consen  293 ---LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD----GSIQIWD---------KGSRTVRPVM  355 (641)
T ss_pred             ---EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccC----Cceeeee---------cCCcccccce
Confidence               22332222222333333  33355666666655  4556 5556543    2466776         2344432222


Q ss_pred             -----CCCCcceeEE--EECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-C---cCcEEEcCCCCCCCCC
Q 016328          263 -----PRGGPHRACV--VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D---EMKWKVLPSMPKPDSH  331 (391)
Q Consensus       263 -----p~~~~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~---~~~W~~v~~~~~~~~~  331 (391)
                           ...+...+++  ..++++++--|.+..                    -.+|.++ .   -..|+-+..+   -..
T Consensus       356 ~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--------------------LKvWDLrq~kkpL~~~tgL~t~---~~~  412 (641)
T KOG0772|consen  356 KVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--------------------LKVWDLRQFKKPLNVRTGLPTP---FPG  412 (641)
T ss_pred             EeeeccCCCCceeEEEeccccchhhhccCCCc--------------------eeeeeccccccchhhhcCCCcc---CCC
Confidence                 2222223444  457787777776532                    2367665 2   2456665432   222


Q ss_pred             ceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc-cccCCCc
Q 016328          332 IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV-SAFYPFN  381 (391)
Q Consensus       332 ~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~lp~~  381 (391)
                      .. ++...+.+|++.|-...++...      ..++.||+.+-. ..+++..
T Consensus       413 td-c~FSPd~kli~TGtS~~~~~~~------g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  413 TD-CCFSPDDKLILTGTSAPNGMTA------GTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             Cc-cccCCCceEEEecccccCCCCC------ceEEEEeccceeeEEEecCC
Confidence            22 3467788888877665544322      257888887666 5555554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.50  E-value=17  Score=33.50  Aligned_cols=200  Identities=13%  Similarity=0.148  Sum_probs=86.6

Q ss_pred             ccCceEEcc-CCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEE-EeCCEE
Q 016328           98 PELKWEKMK-AAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV-TDGRYI  174 (391)
Q Consensus        98 ~~~~W~~~~-~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~-~~~~~i  174 (391)
                      ...+|++++ +.+.|...+.+..+ ++.++++|..       ..+++=.-.-.+|+.+..-..  . .-..+. .-++++
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~--g-s~~~~~r~~dG~~  158 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETS--G-SINDITRSSDGRY  158 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-------EEEEEE-TTS-E
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCc--c-eeEeEEECCCCcE
Confidence            456999985 23344444555444 5577777642       235555556679998643222  1 222233 346665


Q ss_pred             EEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328          175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK  254 (391)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~  254 (391)
                      ++++. .+       +-+...|+....|+........|-......-++.|+++. ..+.-...+          ......
T Consensus       159 vavs~-~G-------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~----------~~~~~~  219 (302)
T PF14870_consen  159 VAVSS-RG-------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD----------DPDDGE  219 (302)
T ss_dssp             EEEET-TS-------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-----------TTEEE
T ss_pred             EEEEC-cc-------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc----------CCCCcc
Confidence            55553 22       223457888889998765444444444445567787765 221100000          012345


Q ss_pred             Cceee-cCCCCCCcce-eEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCC-CCCC
Q 016328          255 EWRTE-IPIPRGGPHR-ACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM-PKPD  329 (391)
Q Consensus       255 ~W~~~-~~~p~~~~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~-~~~~  329 (391)
                      +|++. .+......+. .++.- ++.+++.||..                       .+++=. ..++|++.... +.|-
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-----------------------~l~~S~DgGktW~~~~~~~~~~~  276 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-----------------------TLLVSTDGGKTWQKDRVGENVPS  276 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEESTT------------------------EEEESSTTSS-EE-GGGTTSSS
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCCc-----------------------cEEEeCCCCccceECccccCCCC
Confidence            66652 3333344432 22332 57899998863                       144443 77899998532 2222


Q ss_pred             CCceeeEEEECCEEEEEcccc
Q 016328          330 SHIEFAWVLVNNSIVIVGGTT  350 (391)
Q Consensus       330 ~~~~~~~~~~~~~l~i~GG~~  350 (391)
                      ... .-...-+++-|++|-..
T Consensus       277 n~~-~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  277 NLY-RIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             ----EEEEEETTEEEEE-STT
T ss_pred             ceE-EEEEcCCCceEEECCCc
Confidence            211 12234557899998653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.43  E-value=4.7  Score=36.17  Aligned_cols=101  Identities=21%  Similarity=0.244  Sum_probs=63.5

Q ss_pred             EEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceE
Q 016328          165 LGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       165 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      -+... .++.||.--|..+      .+.+.+||+++.+=....++|..-.+-.++.++++||.+-=.+..     .-.|+
T Consensus        48 QGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~-----~f~yd  116 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGT-----GFVYD  116 (264)
T ss_dssp             EEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSE-----EEEEE
T ss_pred             ccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCe-----EEEEc
Confidence            34555 6789999888765      578899999999877667788877888899999999999644322     22222


Q ss_pred             eeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCC
Q 016328          244 LAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQE  285 (391)
Q Consensus       244 ~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~  285 (391)
                             +.  +.+.+...+....+-+.+.-+..+++--|.+
T Consensus       117 -------~~--tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~  149 (264)
T PF05096_consen  117 -------PN--TLKKIGTFPYPGEGWGLTSDGKRLIMSDGSS  149 (264)
T ss_dssp             -------TT--TTEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred             -------cc--cceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence                   22  3344443333333446666677788877743

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.41  E-value=4.2  Score=37.82  Aligned_cols=248  Identities=15%  Similarity=0.146  Sum_probs=114.2

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE-CCEEEEEecc---CCCCCCcceeEEEECCCCC--eee-CCCCCC---CC
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGY---GSIDYVHSHVDIYNFTDNT--WGG-RFDMPR---EM  160 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~---~~~~~~~~~~~~yd~~~~~--W~~-~~~~p~---~~  160 (391)
                      .++.+|..+++-  +..++..-..+.+..- ++.+|++.=+   ...+...+-+++||.+|-+  ++. +|+-|.   ..
T Consensus        18 rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   18 RVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             eEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            677888777653  4444444444433332 4578876543   1223345679999999874  544 332211   01


Q ss_pred             CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCC---ccCC
Q 016328          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN---RYTP  237 (391)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~---~~~~  237 (391)
                      .+...++...+..+||.-       ..+..++-+-|.+.++--.  .++.|-|.+..-.-++.++.+.|-..-   .+..
T Consensus        96 ~~~~~~ls~dgk~~~V~N-------~TPa~SVtVVDl~~~kvv~--ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~  166 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQN-------FTPATSVTVVDLAAKKVVG--EIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDA  166 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEE-------ESSSEEEEEEETTTTEEEE--EEEGTSEEEEEEEETTEEEEEETTSCEEEEEETS
T ss_pred             cccceEEccCCcEEEEEc-------cCCCCeEEEEECCCCceee--eecCCCEEEEEecCCCceEEEecCCceEEEEECC
Confidence            122333444556777762       3457889999999887543  333343333333334444444432100   0000


Q ss_pred             CccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEE--eCCCCCCCcCCCCCccccCcCCceecCcEEEEc-
Q 016328          238 EVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVI--GGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  314 (391)
Q Consensus       238 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~--GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-  314 (391)
                      .-+.-.....-|++..+-.-.-+...+.....-...++|+||-+  +|....                  +......+. 
T Consensus       167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~------------------~~~~~~~~t~  228 (342)
T PF06433_consen  167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK------------------FGKPWSLLTD  228 (342)
T ss_dssp             TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE------------------EEEEEESS-H
T ss_pred             CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc------------------ccCcccccCc
Confidence            00000111112344444433333333333233456778888884  443211                  111111111 


Q ss_pred             --CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEcc--ccCCCCcccceeEecceEEEecCccc-cccCC
Q 016328          315 --DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG--TTEKHPTTKKMVLVGEIFQFNLNTLV-SAFYP  379 (391)
Q Consensus       315 --~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG--~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~lp  379 (391)
                        ....|..-.-..       .++-.-.++||+..=  ..+.++.     ...+||.||+++.+ ..++|
T Consensus       229 ~e~~~~WrPGG~Q~-------~A~~~~~~rlyvLMh~g~~gsHKd-----pgteVWv~D~~t~krv~Ri~  286 (342)
T PF06433_consen  229 AEKADGWRPGGWQL-------IAYHAASGRLYVLMHQGGEGSHKD-----PGTEVWVYDLKTHKRVARIP  286 (342)
T ss_dssp             HHHHTTEEE-SSS--------EEEETTTTEEEEEEEE--TT-TTS------EEEEEEEETTTTEEEEEEE
T ss_pred             cccccCcCCcceee-------eeeccccCeEEEEecCCCCCCccC-----CceEEEEEECCCCeEEEEEe
Confidence              124566533111       222224578887742  2223322     23699999999888 55544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.40  E-value=2.7  Score=37.62  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=73.0

Q ss_pred             ceeeEeecC--cccccccccccccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC
Q 016328           72 ENIGVKTKK--DVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT  149 (391)
Q Consensus        72 ~g~~~~~~~--~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~  149 (391)
                      .|+.....+  +...|.+=.+.+..+|+.+++=.+..++|..-.+=.++.++++||..-=.      ....++||+.+  
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t--  119 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNT--  119 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEEEEEETTT--
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeEEEEcccc--
Confidence            456554444  55555544557889999998876667788777788889999999998522      24589999864  


Q ss_pred             eeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328          150 WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       150 W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (391)
                      .+.+...+.  +..+.+++..+..|++.-|         ++.++.+||++-+
T Consensus       120 l~~~~~~~y--~~EGWGLt~dg~~Li~SDG---------S~~L~~~dP~~f~  160 (264)
T PF05096_consen  120 LKKIGTFPY--PGEGWGLTSDGKRLIMSDG---------SSRLYFLDPETFK  160 (264)
T ss_dssp             TEEEEEEE---SSS--EEEECSSCEEEE-S---------SSEEEEE-TTT-S
T ss_pred             ceEEEEEec--CCcceEEEcCCCEEEEECC---------ccceEEECCcccc
Confidence            566555554  3456778877888888755         6789999998643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=89.37  E-value=3.4  Score=32.69  Aligned_cols=82  Identities=12%  Similarity=0.244  Sum_probs=55.7

Q ss_pred             EeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC---CCCCCCCceEEEECCEEEEEccCCCCccCCCccceEee
Q 016328          169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA  245 (391)
Q Consensus       169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~  245 (391)
                      ..+|-+|-..-. ..   .....+.+||.++++|+.++.   ..........+.++|+|-++.-..... ....+.|-++
T Consensus         3 cinGvly~~a~~-~~---~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe   77 (129)
T PF08268_consen    3 CINGVLYWLAWS-ED---SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE   77 (129)
T ss_pred             EECcEEEeEEEE-CC---CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence            467777766544 11   125788999999999998863   335566778888999998886543221 2346777765


Q ss_pred             eecCCcccCCceee
Q 016328          246 VKDGKPLEKEWRTE  259 (391)
Q Consensus       246 ~~~~d~~~~~W~~~  259 (391)
                          |..+.+|+..
T Consensus        78 ----D~~k~~Wsk~   87 (129)
T PF08268_consen   78 ----DYEKQEWSKK   87 (129)
T ss_pred             ----ccccceEEEE
Confidence                4567899864

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=89.24  E-value=16  Score=32.73  Aligned_cols=162  Identities=14%  Similarity=0.159  Sum_probs=90.0

Q ss_pred             ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCC----------CCcceEEEEEe
Q 016328          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE----------MAHSHLGMVTD  170 (391)
Q Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----------~~r~~~~~~~~  170 (391)
                      +..+.-.||.+-.+.+.++.++.+|---.      ..+.+.+||+.+++=.....||..          .+-...-.++.
T Consensus        58 ~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvD  131 (250)
T PF02191_consen   58 RSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVD  131 (250)
T ss_pred             CCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEc
Confidence            33333445666667777888888877533      246699999999875532233320          01123556777


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCC----CceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeee
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTET----KKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAV  246 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  246 (391)
                      ++=|+|+=.......   .-.+-+.||++    .+|..  ..+.+.. ..+.++.|.||++-......        ....
T Consensus       132 E~GLWvIYat~~~~g---~ivvskld~~tL~v~~tw~T--~~~k~~~-~naFmvCGvLY~~~s~~~~~--------~~I~  197 (250)
T PF02191_consen  132 ENGLWVIYATEDNNG---NIVVSKLDPETLSVEQTWNT--SYPKRSA-GNAFMVCGVLYATDSYDTRD--------TEIF  197 (250)
T ss_pred             CCCEEEEEecCCCCC---cEEEEeeCcccCceEEEEEe--ccCchhh-cceeeEeeEEEEEEECCCCC--------cEEE
Confidence            777888754433221   23455678775    45763  3333333 34667788999997554221        1223


Q ss_pred             ecCCcccCCceee-cCCCCCCcceeEEEE---CCEEEEEe
Q 016328          247 KDGKPLEKEWRTE-IPIPRGGPHRACVVV---DDRLLVIG  282 (391)
Q Consensus       247 ~~~d~~~~~W~~~-~~~p~~~~~~~~~~~---~~~i~v~G  282 (391)
                      +.||..+++=..+ -+++......+++..   +.+||+.-
T Consensus       198 yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd  237 (250)
T PF02191_consen  198 YAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD  237 (250)
T ss_pred             EEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence            4455555544432 234444434455544   56788874

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=89.20  E-value=14  Score=32.13  Aligned_cols=62  Identities=5%  Similarity=0.001  Sum_probs=29.9

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeC-CEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      +.+++.++.+      ..+.+||+.+.+-...  +... ...-.++.... +.+++.|..        ...+..||..+.
T Consensus       105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~l~~~~~--------~~~i~i~d~~~~  167 (289)
T cd00200         105 GRILSSSSRD------KTIKVWDVETGKCLTT--LRGH-TDWVNSVAFSPDGTFVASSSQ--------DGTIKLWDLRTG  167 (289)
T ss_pred             CCEEEEecCC------CeEEEEECCCcEEEEE--eccC-CCcEEEEEEcCcCCEEEEEcC--------CCcEEEEEcccc
Confidence            3666666532      3488899875432221  1110 11122333333 445544432        245778888643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=89.13  E-value=23  Score=34.50  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      ..++++|+.+++.+.+...+.  ..........+.+|++....++      ..+++.+|.++..-+.+..
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~  287 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPG--MTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTD  287 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCC--cccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccC
Confidence            469999999998887765554  2222233333445655443222      4678999999888777654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=88.90  E-value=23  Score=34.08  Aligned_cols=62  Identities=15%  Similarity=0.259  Sum_probs=37.7

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      ..++++|+.+++-+.+...+.  ..........+..|++....++      ..+++.+|+.+...+.+..
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~--~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~  275 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPG--MNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTN  275 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCC
Confidence            458999999887766654433  2222222223345665543222      3678999999888777754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=88.88  E-value=26  Score=34.79  Aligned_cols=116  Identities=15%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             hheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCC--CC-----CceeeEeecCccccccccccccccccccc
Q 016328           29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGP--QK-----GENIGVKTKKDVVPKRILPATFQDLPAPE   99 (391)
Q Consensus        29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~--r~-----~~g~~~~~~~~~~~~~~~~~~~~~~d~~~   99 (391)
                      -++.++.+|+... +     ..+..+|+++.+  .......+  +.     ..+.++...+.+.-+ .....+..+|..+
T Consensus        57 Pvv~~g~vy~~~~-~-----g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~-~~~g~v~AlD~~T  129 (488)
T cd00216          57 PLVVDGDMYFTTS-H-----SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG-TFDGRLVALDAET  129 (488)
T ss_pred             CEEECCEEEEeCC-C-----CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe-cCCCeEEEEECCC
Confidence            4566888888654 2     367888998887  33322111  10     112222110211111 1234678888775


Q ss_pred             C--ceEEccCCCC-Cc--cCceEEEECCEEEEEeccCCCC---CCcceeEEEECCCCC--eee
Q 016328          100 L--KWEKMKAAPV-PR--LDGAAIQIKNLLYVFAGYGSID---YVHSHVDIYNFTDNT--WGG  152 (391)
Q Consensus       100 ~--~W~~~~~~p~-~r--~~~~~~~~~~~vyv~GG~~~~~---~~~~~~~~yd~~~~~--W~~  152 (391)
                      .  .|+.-...+. ..  ...+.++.++.+|+ |..+...   .....+..+|..+.+  |+.
T Consensus       130 G~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         130 GKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             CCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence            5  6876432221 11  12333555666665 4322211   123468999998764  875

The alignment model contains an 8-bladed beta-propeller.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.33  E-value=25  Score=33.88  Aligned_cols=117  Identities=9%  Similarity=0.148  Sum_probs=55.8

Q ss_pred             ccCceEEccCCC-CCccCceEEEEC-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC--CCCCc-----------
Q 016328           98 PELKWEKMKAAP-VPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP--REMAH-----------  162 (391)
Q Consensus        98 ~~~~W~~~~~~p-~~r~~~~~~~~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~~~r-----------  162 (391)
                      ...+|++++..+ .|-.......++ +.++++|..       ..+++=+-...+|+.+...+  .++.+           
T Consensus       164 gG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~  236 (398)
T PLN00033        164 GGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASY  236 (398)
T ss_pred             CCCCceECccccCCCCCceEEEEECCCceEEEecc-------ceEEEECCCCCCceEcccccccccccccccccccccce
Confidence            346899875432 222233344444 467777732       22555555567899862111  11111           


Q ss_pred             ---ceEEEE-EeCCEEEEEeCccCCCCCCCcceeEE-EeCCCCceEECCCCCCCCCCceEEEECCEEEEEccC
Q 016328          163 ---SHLGMV-TDGRYIYVVTGQYGPQCRGPTAHTFV-LDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS  230 (391)
Q Consensus       163 ---~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~  230 (391)
                         ...++. ..++.++++|-.         -.+++ .|.....|+.+......+-.......++.++++|..
T Consensus       237 y~Gsf~~v~~~~dG~~~~vg~~---------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~  300 (398)
T PLN00033        237 YTGTFSTVNRSPDGDYVAVSSR---------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG  300 (398)
T ss_pred             eccceeeEEEcCCCCEEEEECC---------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC
Confidence               111222 234455555421         12333 444444599886433333222233457788888743

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.80  E-value=21  Score=32.48  Aligned_cols=165  Identities=17%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             eCCCCCCCCCcceEEEEEeCCEEEEEeCcc-------CCCC-------CCCcceeEEEeCCCCc----eEECCCCCCCCC
Q 016328          152 GRFDMPREMAHSHLGMVTDGRYIYVVTGQY-------GPQC-------RGPTAHTFVLDTETKK----WQDLPPLPVPRY  213 (391)
Q Consensus       152 ~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~-------~~~~-------~~~~~~~~~yd~~~~~----W~~~~~~~~~r~  213 (391)
                      .+.+.|..-.-.+-++..+++.|| |||.-       +...       .+..+-++.||.++++    |++--.-+...+
T Consensus        27 lvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~Wa  105 (339)
T PF09910_consen   27 LVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWA  105 (339)
T ss_pred             eccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccc
Confidence            355555533344557777888777 68862       1110       0124678999999887    665332222222


Q ss_pred             CceEE----EECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCC
Q 016328          214 APATQ----LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFM  289 (391)
Q Consensus       214 ~~~~~----~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~  289 (391)
                      +-..-    .++++|++.-+-.    ......|.     .|..+.+=+.+..-|...   .+.+.|...|-+  .+... 
T Consensus       106 GEVSdIlYdP~~D~LLlAR~DG----h~nLGvy~-----ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~-  170 (339)
T PF09910_consen  106 GEVSDILYDPYEDRLLLARADG----HANLGVYS-----LDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHK-  170 (339)
T ss_pred             cchhheeeCCCcCEEEEEecCC----cceeeeEE-----EcccCCceeeccCCCCcC---ceEeeeeEEEec--ccccc-
Confidence            21111    2467888774311    11233344     356666666655444332   455556555544  22111 


Q ss_pred             cCCCCCccccCcCCceecCcEEEEc-CcCcE--EEcCCC------CCCCCCceeeEEEECCEEEEE--ccc
Q 016328          290 AKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW--KVLPSM------PKPDSHIEFAWVLVNNSIVIV--GGT  349 (391)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W--~~v~~~------~~~~~~~~~~~~~~~~~l~i~--GG~  349 (391)
                                      =...+.++| .+++|  +..+.-      +.-+...+ +++...+++|.|  ||.
T Consensus       171 ----------------g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G-~~~s~ynR~faF~rGGi  224 (339)
T PF09910_consen  171 ----------------GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELG-AMASAYNRLFAFVRGGI  224 (339)
T ss_pred             ----------------CCceEEEEEccCCeEEEEecccccCCCCCceEeeccc-cEEEEeeeEEEEEeccE
Confidence                            134589999 89999  333211      11122222 346677777655  553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=87.26  E-value=31  Score=33.81  Aligned_cols=104  Identities=9%  Similarity=0.015  Sum_probs=57.3

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      .++.+|..+.+-+.+...+..-...+..--+..|++....++    ..+++.+|..+++.+.+.....  .-...+....
T Consensus       243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~--~~~~p~wSpD  316 (448)
T PRK04792        243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRA--IDTEPSWHPD  316 (448)
T ss_pred             EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCC--CccceEECCC
Confidence            577778777666666544322111111112345655543332    2459999999998887654322  1112222223


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP  206 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~  206 (391)
                      +..|++.....+      ..+++.+|.++.+++.+.
T Consensus       317 G~~I~f~s~~~g------~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        317 GKSLIFTSERGG------KPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCEEEEe
Confidence            445555432221      368999999999888774

>smart00284 OLF Olfactomedin-like domains

Probab=87.16  E-value=22  Score=31.87  Aligned_cols=76  Identities=18%  Similarity=0.182  Sum_probs=46.1

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEEC----CCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEe
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNF----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD  196 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~----~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (391)
                      ++++|++-+....   .+.++.|.-    ...++.+.-.||.  +-.+.+.++++|.+|.--.        ....+.+||
T Consensus        34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~--------~s~~iiKyd  100 (255)
T smart00284       34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKF--------NSHDICRFD  100 (255)
T ss_pred             CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEec--------CCccEEEEE
Confidence            4678988665311   234666642    2334433334554  3456678899999998532        157899999


Q ss_pred             CCCCceEECCCCC
Q 016328          197 TETKKWQDLPPLP  209 (391)
Q Consensus       197 ~~~~~W~~~~~~~  209 (391)
                      +.+++=.....+|
T Consensus       101 L~t~~v~~~~~Lp  113 (255)
T smart00284      101 LTTETYQKEPLLN  113 (255)
T ss_pred             CCCCcEEEEEecC
Confidence            9998754433344

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=86.85  E-value=10  Score=35.21  Aligned_cols=121  Identities=14%  Similarity=0.115  Sum_probs=77.3

Q ss_pred             ccccccccccC-----ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC-eeeCCCCCCCCCcc
Q 016328           90 ATFQDLPAPEL-----KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGRFDMPREMAHS  163 (391)
Q Consensus        90 ~~~~~~d~~~~-----~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~~~r~  163 (391)
                      ..+..|+....     +++.+.....+-.-.+++.+++++.+.-|        +.+.+|++..++ +...+.+..+  -.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~--~~  131 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSP--FY  131 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BS--SS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecce--EE
Confidence            35666766663     55555554444445777888999777665        348888888888 8888777663  35


Q ss_pred             eEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEE
Q 016328          164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVM  227 (391)
Q Consensus       164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~  227 (391)
                      ..++.+.++.|++---..       .-.+..|+.+.++-..++.-..++...++..+ ++..++.
T Consensus       132 i~sl~~~~~~I~vgD~~~-------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~  189 (321)
T PF03178_consen  132 ITSLSVFKNYILVGDAMK-------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV  189 (321)
T ss_dssp             EEEEEEETTEEEEEESSS-------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred             EEEEeccccEEEEEEccc-------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence            667778888766542211       34566788877778888766667776666666 6553333

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK00178 tolB translocation protein TolB; Provisional

Probab=86.40  E-value=33  Score=33.25  Aligned_cols=62  Identities=11%  Similarity=0.195  Sum_probs=38.0

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      ..++++|+.+++-+.+...+.  .-........+.+|++....++      ..+++.+|..+.+.+.+..
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g--~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~  284 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEG--LNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTN  284 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCC--CcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEccc
Confidence            359999999988877755443  1111222223445554432221      3689999999998887764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=85.73  E-value=12  Score=34.75  Aligned_cols=94  Identities=10%  Similarity=0.083  Sum_probs=59.3

Q ss_pred             CEEEEEecc-CCC--CCCc-ceeEEEECCCC-----CeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCccee
Q 016328          122 NLLYVFAGY-GSI--DYVH-SHVDIYNFTDN-----TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHT  192 (391)
Q Consensus       122 ~~vyv~GG~-~~~--~~~~-~~~~~yd~~~~-----~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  192 (391)
                      ...+|+|-. ...  .... ..+..|+...+     +++.+.....  .-.-.+++.++++|.+.-|          +.+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g----------~~l  109 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVG----------NKL  109 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEET----------TEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeec----------CEE
Confidence            456666643 211  1112 56889998885     5565544333  2234677888999666654          567


Q ss_pred             EEEeCCCCc-eEECCCCCCCCCCceEEEECCEEEEE
Q 016328          193 FVLDTETKK-WQDLPPLPVPRYAPATQLWRGRLHVM  227 (391)
Q Consensus       193 ~~yd~~~~~-W~~~~~~~~~r~~~~~~~~~~~iyv~  227 (391)
                      ..|+...++ +...+.+..+-...++.+.++.|++-
T Consensus       110 ~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vg  145 (321)
T PF03178_consen  110 YVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVG  145 (321)
T ss_dssp             EEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEE
T ss_pred             EEEEccCcccchhhheecceEEEEEEeccccEEEEE
Confidence            788888777 88887766666667777888876654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.50  E-value=37  Score=32.89  Aligned_cols=130  Identities=15%  Similarity=0.164  Sum_probs=66.2

Q ss_pred             EECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEE-EeCccCCCCCCCcceeEEEeC
Q 016328          119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYV-VTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       119 ~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv-~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      ..++.|++.||+++      .+-.||..+.+ ..+-.+..+.+- .--+++-++.+++ .||          +.+-.+|.
T Consensus       163 ~~~~hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pV-e~vl~lpsgs~iasAgG----------n~vkVWDl  224 (487)
T KOG0310|consen  163 PANDHIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPV-ESVLALPSGSLIASAGG----------NSVKVWDL  224 (487)
T ss_pred             cCCCeEEEecCCCc------eEEEEEeccCC-ceeEEecCCCce-eeEEEcCCCCEEEEcCC----------CeEEEEEe
Confidence            34678999999975      36778888774 333344443221 1223333434444 444          55667777


Q ss_pred             CCCceEECCCCCCCCCCc-----eEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCC--CCCCcce
Q 016328          198 ETKKWQDLPPLPVPRYAP-----ATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI--PRGGPHR  269 (391)
Q Consensus       198 ~~~~W~~~~~~~~~r~~~-----~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~~~~~  269 (391)
                      .+..     .++..+..|     ++... ++.-.+.||.+.     .++.|+         +..|+.+-.+  |.+-.  
T Consensus       225 ~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd---------~t~~Kvv~s~~~~~pvL--  283 (487)
T KOG0310|consen  225 TTGG-----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD---------TTNYKVVHSWKYPGPVL--  283 (487)
T ss_pred             cCCc-----eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE---------ccceEEEEeeeccccee--
Confidence            6443     222222212     12221 334455666543     356665         3344444332  33332  


Q ss_pred             eEE-EECCEEEEEeCCCCC
Q 016328          270 ACV-VVDDRLLVIGGQEGD  287 (391)
Q Consensus       270 ~~~-~~~~~i~v~GG~~~~  287 (391)
                      +++ .-++.-.++|..++-
T Consensus       284 siavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  284 SIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             eEEecCCCceEEEecccce
Confidence            333 347788888887643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=85.11  E-value=39  Score=32.85  Aligned_cols=72  Identities=8%  Similarity=0.147  Sum_probs=44.4

Q ss_pred             EEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          118 IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       118 ~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      +.++++||.+.-.++-+.    ++.-|++.+--++-.+...--+|    -+-.+++=.||-         ..-++|.|||
T Consensus       232 mIV~~RvYFlsD~eG~Gn----lYSvdldGkDlrrHTnFtdYY~R----~~nsDGkrIvFq---------~~GdIylydP  294 (668)
T COG4946         232 MIVGERVYFLSDHEGVGN----LYSVDLDGKDLRRHTNFTDYYPR----NANSDGKRIVFQ---------NAGDIYLYDP  294 (668)
T ss_pred             eEEcceEEEEecccCccc----eEEeccCCchhhhcCCchhcccc----ccCCCCcEEEEe---------cCCcEEEeCC
Confidence            567999999987766543    55567766655554444431122    223455555552         1357899999


Q ss_pred             CCCceEECC
Q 016328          198 ETKKWQDLP  206 (391)
Q Consensus       198 ~~~~W~~~~  206 (391)
                      +++.-+.+.
T Consensus       295 ~td~lekld  303 (668)
T COG4946         295 ETDSLEKLD  303 (668)
T ss_pred             CcCcceeee
Confidence            998887764

>cd00094 HX Hemopexin-like repeats

Probab=83.77  E-value=26  Score=29.84  Aligned_cols=94  Identities=16%  Similarity=0.208  Sum_probs=47.2

Q ss_pred             EEEECCEEEEEeccCCCCCCcceeEEEECCCCCee--eCC----CCCCCCCcceEEEEEeC-CEEEEEeCccCCCCCCCc
Q 016328          117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWG--GRF----DMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPT  189 (391)
Q Consensus       117 ~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~--~~~----~~p~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~  189 (391)
                      +....+++|+|-|.        .+++++.......  .+.    .+|.   .-..+....+ +++|+|-|          
T Consensus        12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~---~IDAa~~~~~~~~~yfFkg----------   70 (194)
T cd00094          12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS---PVDAAFERPDTGKIYFFKG----------   70 (194)
T ss_pred             EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC---CccEEEEECCCCEEEEECC----------
Confidence            34456899999773        3677765422111  111    1222   1222333333 89999954          


Q ss_pred             ceeEEEeCCCCceE---ECCCCCCC---CCCceEEEE--CCEEEEEccCC
Q 016328          190 AHTFVLDTETKKWQ---DLPPLPVP---RYAPATQLW--RGRLHVMGGSG  231 (391)
Q Consensus       190 ~~~~~yd~~~~~W~---~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~  231 (391)
                      +..|+||..+..+.   .+.....+   ..--++...  ++++|+|-|..
T Consensus        71 ~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~  120 (194)
T cd00094          71 DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK  120 (194)
T ss_pred             CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE
Confidence            56788887642221   11111111   212233333  68999998854

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.22  E-value=31  Score=30.50  Aligned_cols=103  Identities=15%  Similarity=0.207  Sum_probs=58.3

Q ss_pred             EEEEEeCccCCCCCCCcceeEEEeCCCCceEECC----------------CCCCCCCCceEEEECCEEEEEccCCCCccC
Q 016328          173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP----------------PLPVPRYAPATQLWRGRLHVMGGSGENRYT  236 (391)
Q Consensus       173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~----------------~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~  236 (391)
                      +=++.||++.      +-.+|.||-.  +|..-.                ....++..-+.+..+++++|+--.      
T Consensus       176 krlvSgGcDn------~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~------  241 (299)
T KOG1332|consen  176 KRLVSGGCDN------LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD------  241 (299)
T ss_pred             ceeeccCCcc------ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec------
Confidence            4478888765      5566777654  564331                233566666666667777776311      


Q ss_pred             CCccceEeeeecCCcccCCcee--ecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc
Q 016328          237 PEVDHWSLAVKDGKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD  314 (391)
Q Consensus       237 ~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  314 (391)
                                    .+.++|+.  +.+.|......+-...++-|-|-||.+.-                     .+|.-+
T Consensus       242 --------------~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv---------------------tlwke~  286 (299)
T KOG1332|consen  242 --------------EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV---------------------TLWKEN  286 (299)
T ss_pred             --------------CccCcccccccccCCcceEEEEEeccccEEEEecCCcEE---------------------EEEEeC
Confidence                          22345543  34556555544555556666666665421                     245544


Q ss_pred             CcCcEEEcCC
Q 016328          315 DEMKWKVLPS  324 (391)
Q Consensus       315 ~~~~W~~v~~  324 (391)
                      ...+|.++..
T Consensus       287 ~~Gkw~~v~~  296 (299)
T KOG1332|consen  287 VDGKWEEVGE  296 (299)
T ss_pred             CCCcEEEccc
Confidence            5678998864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=82.60  E-value=42  Score=31.36  Aligned_cols=150  Identities=14%  Similarity=0.191  Sum_probs=78.4

Q ss_pred             EEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCC--CCceEEEECCEEEEEccCCCCccCCCccc
Q 016328          165 LGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR--YAPATQLWRGRLHVMGGSGENRYTPEVDH  241 (391)
Q Consensus       165 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  241 (391)
                      ++++.. ++.+.+.||.+        +..+.++..+..|--  .++--.  -..+...+++.+.+.|+.++.     +.+
T Consensus        68 Favsl~P~~~l~aTGGgD--------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG~-----v~v  132 (399)
T KOG0296|consen   68 FAVSLHPNNNLVATGGGD--------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSGK-----VLV  132 (399)
T ss_pred             EEEEeCCCCceEEecCCC--------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCcc-----EEE
Confidence            455554 77888898863        445778888877432  222211  222334678889999988653     333


Q ss_pred             eEeeeecCCcccCCceeecCCCCCCcceeEEE-E-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCc
Q 016328          242 WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV-V-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK  318 (391)
Q Consensus       242 ~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~-~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~  318 (391)
                      |..     .....+|....++..-    .... + ...|+++|-.++.                      +|.|. ++..
T Consensus       133 ~~~-----stg~~~~~~~~e~~di----eWl~WHp~a~illAG~~DGs----------------------vWmw~ip~~~  181 (399)
T KOG0296|consen  133 FKV-----STGGEQWKLDQEVEDI----EWLKWHPRAHILLAGSTDGS----------------------VWMWQIPSQA  181 (399)
T ss_pred             EEc-----ccCceEEEeecccCce----EEEEecccccEEEeecCCCc----------------------EEEEECCCcc
Confidence            433     2445555543222100    0000 0 2356777765443                      78877 5432


Q ss_pred             EEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          319 WKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       319 W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      -.+  -|+-+.....++-...+|+..+.|=.++            .+..+++++.+
T Consensus       182 ~~k--v~~Gh~~~ct~G~f~pdGKr~~tgy~dg------------ti~~Wn~ktg~  223 (399)
T KOG0296|consen  182 LCK--VMSGHNSPCTCGEFIPDGKRILTGYDDG------------TIIVWNPKTGQ  223 (399)
T ss_pred             eee--EecCCCCCcccccccCCCceEEEEecCc------------eEEEEecCCCc
Confidence            222  2333333333444566677666554432            46667776665

>smart00284 OLF Olfactomedin-like domains

Probab=82.18  E-value=37  Score=30.41  Aligned_cols=162  Identities=13%  Similarity=0.066  Sum_probs=87.1

Q ss_pred             ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCC-----C-----CcceEEEEEe
Q 016328          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE-----M-----AHSHLGMVTD  170 (391)
Q Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----~-----~r~~~~~~~~  170 (391)
                      ++.+.-.+|.+-.+-+.++.++.+|.--..      ...+.+||+.+++-.....+|..     .     +-...-.++.
T Consensus        63 ~~~~~~~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvD  136 (255)
T smart00284       63 KNPTDHPLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVD  136 (255)
T ss_pred             CCceEEECCCccccccEEEECceEEEEecC------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEc
Confidence            343333466666777788899999984322      34599999999986544444431     0     1122455666


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCC----ceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeee
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETK----KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAV  246 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  246 (391)
                      ++=|+|+=.......   .-.+-+.||.+-    +|..  ..+.+. ...+.++.|.||++-...    ....    ...
T Consensus       137 E~GLWvIYat~~~~g---~ivvSkLnp~tL~ve~tW~T--~~~k~s-a~naFmvCGvLY~~~s~~----~~~~----~I~  202 (255)
T smart00284      137 ENGLWVIYATEQNAG---KIVISKLNPATLTIENTWIT--TYNKRS-ASNAFMICGILYVTRSLG----SKGE----KVF  202 (255)
T ss_pred             CCceEEEEeccCCCC---CEEEEeeCcccceEEEEEEc--CCCccc-ccccEEEeeEEEEEccCC----CCCc----EEE
Confidence            666777622211110   233457787764    4654  333333 335667888999995311    1111    123


Q ss_pred             ecCCcccCCceee-cCCCCCCcceeEEEE---CCEEEEEe
Q 016328          247 KDGKPLEKEWRTE-IPIPRGGPHRACVVV---DDRLLVIG  282 (391)
Q Consensus       247 ~~~d~~~~~W~~~-~~~p~~~~~~~~~~~---~~~i~v~G  282 (391)
                      +.||+.+++=..+ .+++.....+++.-.   +.+||+.-
T Consensus       203 yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd  242 (255)
T smart00284      203 YAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN  242 (255)
T ss_pred             EEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence            4455655542222 344444434455443   56777763

>cd00094 HX Hemopexin-like repeats

Probab=81.75  E-value=32  Score=29.34  Aligned_cols=55  Identities=16%  Similarity=0.187  Sum_probs=28.6

Q ss_pred             EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc--eEECCC-CC-CCCCCceEEEE--CCEEEEEccC
Q 016328          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPP-LP-VPRYAPATQLW--RGRLHVMGGS  230 (391)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~~-~~r~~~~~~~~--~~~iyv~GG~  230 (391)
                      ++....+++|+|-|          ..+|+++.....  -..+.. .| .+..--++...  ++++|+|=|.
T Consensus        11 A~~~~~g~~y~FkG----------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~   71 (194)
T cd00094          11 AVTTLRGELYFFKG----------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGD   71 (194)
T ss_pred             eEEEeCCEEEEEeC----------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCC
Confidence            34445699999965          456777765221  112211 11 12222334433  3789999764

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	391
3ii7_A	306	Crystal Structure Of The Kelch Domain Of Human Klhl		2e-06
3vng_A	309	Crystal Structure Of Keap1 In Complex With Syntheti		5e-05
1u6d_X	308	Crystal Structure Of The Kelch Domain Of Human Keap		5e-04
2xn4_A	302	Crystal Structure Of The Kelch Domain Of Human Klhl		6e-04

>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 105/287 (36%), Gaps = 40/287 (13%)
Query: 89  PATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN 148
           P + +     +  W  ++     R D A +   N++Y+  G  S  +    +D YN   +
Sbjct: 23  PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG--SQLFPIKRMDCYNVVKD 80
Query: 149 TWGGRFD--MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF-VLDTETKKWQDL 205
           +W  +     PR+   S      +G+ IY   G    +      + F   DT T+ W   
Sbjct: 81  SWYSKLGPPTPRD---SLAACAAEGK-IYTSGGS---EVGNSALYLFECYDTRTESWHTK 133
Query: 206 PPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG 265
           P +   R +       G ++V GGS  N  +  V + S  V D  P  + W    P+   
Sbjct: 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN-SCEVYD--PATETWTELCPMIEA 190
Query: 266 GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSM 325
             +   V V D++  +GGQ G                + V Y D+ +     +WK++  M
Sbjct: 191 RKNHGLVFVKDKIFAVGGQNG------------LGGLDNVEYYDIKL----NEWKMVSPM 234
Query: 326 PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372
           P         W  V      VG         + +  +G I ++N  T
Sbjct: 235 P---------WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTET 272

>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169
           VPR    A ++  L+Y   GY       S+++ YN +D TW    D+  ++  S L    
Sbjct: 14  VPRGSHMAPKVGRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADL--QVPRSGLAGCV 69
Query: 170 DGRYIYVVTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMG 228
            G  +Y V G+   P     ++     +  T +W    P+ VPR      +  G ++ +G
Sbjct: 70  VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVG 129
Query: 229 GS-------GENRYTPEVDHWSL 244
           GS          RY PE D W L
Sbjct: 130 GSHGCIHHNSVERYEPERDEWHL 152

>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169
           VPR    A ++  L+Y   GY       S+++ YN +D TW    D+  ++  S L    
Sbjct: 14  VPR-GSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADL--QVPRSGLAGCV 68
Query: 170 DGRYIYVVTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMG 228
            G  +Y V G+   P     ++     +  T +W    P+ VPR      +  G ++ +G
Sbjct: 69  VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVG 128
Query: 229 GS-------GENRYTPEVDHWSL 244
           GS          RY PE D W L
Sbjct: 129 GSHGCIHHNSVERYEPERDEWHL 151

>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 123 LLYVFAGYG-SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY 181
           LLY   GY  +     S V+ YN T N W    +M    + + +G++ +   +Y V G  
Sbjct: 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNN--LLYAVGGHD 214
Query: 182 GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENR 234
           GP  R       V D  T  W+ +  + + R         G L+V+GG       +    
Sbjct: 215 GPLVRKSVE---VYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEY 271
Query: 235 YTPEVDHWSL 244
           Y P  D W++
Sbjct: 272 YNPTTDKWTV 281

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-34
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	8e-19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	4e-13
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-29
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	8e-29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-22
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	4e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	6e-28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	8e-22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	4e-21
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-15
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	7e-28
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	7e-27
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-22
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	7e-28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-19
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-19
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-05
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-17
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-16
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-15
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-07
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	9e-09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  128 bits (323), Expect = 5e-34
 Identities = 52/271 (19%), Positives = 83/271 (30%), Gaps = 48/271 (17%)

Query: 109 PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168
           PVP   G      + +Y+  G         +       D  W      P           
Sbjct: 7   PVPFKSGTGAIDNDTVYIGLGSAG---TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF 63

Query: 169 TDGRYIYVVTGQYGPQCRGPTAHT--FVLDTETKKWQDL-PPLPVPRYAPATQLWRGRLH 225
            DG  +YV  G                  + +T  W  L    P+      T +  G+ +
Sbjct: 64  IDGN-LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAY 122

Query: 226 VMGGSGENRYTPEVDHWSLAVKDGKPLEK---------------------------EWRT 258
           V GG  +N +    +  + A KD   ++K                           +W  
Sbjct: 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSY 182

Query: 259 EIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM 317
               P  G   A VV   D+  +I G+     AKPG       R + V   ++    + +
Sbjct: 183 AGESPWYGTAGAAVVNKGDKTWLINGE-----AKPG------LRTDAV--FELDFTGNNL 229

Query: 318 KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
           KW  L  +  PD        + N+S++  GG
Sbjct: 230 KWNKLAPVSSPDGVAGGFAGISNDSLIFAGG 260

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 85.8 bits (212), Expect = 8e-19
 Identities = 34/281 (12%), Positives = 67/281 (23%), Gaps = 71/281 (25%)

Query: 101 KWEKMKA-APVPRLDGAAIQIKNLLYVFAGYGSIDYVHS--------------------- 138
            W K+ + AP+              YV  G     +                        
Sbjct: 97  SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY 156

Query: 139 ------------HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCR 186
                        +  ++ +   W    + P     +   +V  G   +++ G+  P  R
Sbjct: 157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWY-GTAGAAVVNKGDKTWLINGEAKPGLR 215

Query: 187 GPTAHTFVLDTETKKWQDLPPLPVP--RYAPATQLWRGRLHVMGGSGEN----------- 233
                         KW  L P+  P         +    L   GG+G             
Sbjct: 216 TDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKN 275

Query: 234 -RYTPEVDHWSLAVKDGKPLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMA 290
             +      +S  +        +W    E+   R       +  ++ LL+IGG       
Sbjct: 276 YAHEGLKKSYSTDIHL--WHNGKWDKSGELSQGRAYG--VSLPWNNSLLIIGG------- 324

Query: 291 KPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSH 331
                             D  ++  +     + ++     H
Sbjct: 325 ---------ETAGGKAVTDSVLITVKDNKVTVQNLEHHHHH 356

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 26/147 (17%)

Query: 205 LPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR 264
           LP  PVP  +    +    +++  GS           + L   D +  +K+W      P 
Sbjct: 3   LPETPVPFKSGTGAIDNDTVYIGLGSAGT------AWYKL---DTQAKDKKWTALAAFP- 52

Query: 265 GGP--HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV 321
           GGP        +D  L V GG   +            S     V++DV+  +     W  
Sbjct: 53  GGPRDQATSAFIDGNLYVFGGIGKN------------SEGLTQVFNDVHKYNPKTNSWVK 100

Query: 322 LPSMPKPDSHIEFAWVLVNNSIVIVGG 348
           L S   P         + N    + GG
Sbjct: 101 LMSHA-PMGMAGHVTFVHNGKAYVTGG 126

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 27/117 (23%)

Query: 259 EIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD---D 315
           E P+P         + +D + +  G  G                        Y LD    
Sbjct: 5   ETPVPFK--SGTGAIDNDTVYIGLGSAGT---------------------AWYKLDTQAK 41

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372
           + KW  L + P      +     ++ ++ + GG  +      ++      +    N+
Sbjct: 42  DKKWTALAAFPGGPRD-QATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  114 bits (287), Expect = 3e-29
 Identities = 48/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH---VDIYNFTDNTWGGRFDMP 157
            W ++    VPR   A   +  LLY   G  +    ++    +D YN   N W     M 
Sbjct: 50  TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109

Query: 158 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPAT 217
                + +G+     +IY V G +G             + E  +W  + P+   R     
Sbjct: 110 V--PRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHLVAPMLTRRIGVGV 164

Query: 218 QLWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRA 270
            +    L+ +GG            Y PE + W +             T +   R G    
Sbjct: 165 AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM------------ITAMNTIRSGA--G 210

Query: 271 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPD 329
             V+ + +   GG +G              + N V  YD      +   W  +  M    
Sbjct: 211 VCVLHNCIYAAGGYDG------------QDQLNSVERYD-----VETETWTFVAPMKHR- 252

Query: 330 SHIEFAWVLVNNSIVIVGG 348
                   +    I ++GG
Sbjct: 253 -RSALGITVHQGRIYVLGG 270

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 56/259 (21%), Positives = 92/259 (35%), Gaps = 53/259 (20%)

Query: 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMA 161
                +  VPR   A   +  L+Y   GY       S+++ YN ++ TW    D+   + 
Sbjct: 6   HHHHSSGLVPRGSHAPK-VGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQ--VP 60

Query: 162 HSHLGMVTDGRYIYVVTGQ-YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
            S L     G  +Y V G+   P     ++     +  T +W    P+ VPR      + 
Sbjct: 61  RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI 120

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 273
            G ++ +GGS          RY PE D W L      P+           R G      V
Sbjct: 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV----APM--------LTRRIGV--GVAV 166

Query: 274 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYD---DVYMLDDEMKWKVLPSMPKPD 329
           ++  L  +GG +G             +R N    Y    +        +W+++ +M    
Sbjct: 167 LNRLLYAVGGFDGT------------NRLNSAECYYPERN--------EWRMITAMNTIR 206

Query: 330 SHIEFAWVLVNNSIVIVGG 348
           S       +++N I   GG
Sbjct: 207 SG--AGVCVLHNCIYAAGG 223

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 95.5 bits (238), Expect = 2e-22
 Identities = 39/236 (16%), Positives = 63/236 (26%), Gaps = 45/236 (19%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W       VPR       I   +Y   G     + +S V+ Y    + W     M    
Sbjct: 101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNS-VERYEPERDEWHLVAPMLT-- 157

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
               +G+    R +Y V G  G               E  +W+ +  +   R      + 
Sbjct: 158 RRIGVGVAVLNRLLYAVGGFDGTNR---LNSAECYYPERNEWRMITAMNTIRSGAGVCVL 214

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 273
              ++  GG           RY  E + W+                +   R        V
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFV------------APMKHRRSAL--GITV 260

Query: 274 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKP 328
              R+ V+GG +G                     D V   D +   W  +  M   
Sbjct: 261 HQGRIYVLGGYDG-----------------HTFLDSVECYDPDTDTWSEVTRMTSG 299

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 92.0 bits (229), Expect = 3e-21
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 26/179 (14%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W  +      R+      +  LLY   G+   + ++S  + Y    N W     M    
Sbjct: 148 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMITAMNT-- 204

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S  G+      IY   G  G             D ET+ W  + P+   R A    + 
Sbjct: 205 IRSGAGVCVLHNCIYAAGGYDGQDQ---LNSVERYDVETETWTFVAPMKHRRSALGITVH 261

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 272
           +GR++V+GG   +        Y P+ D WS              T +   R G     V
Sbjct: 262 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV------------TRMTSGRSG-VGVAV 307

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  113 bits (284), Expect = 8e-29
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 49/258 (18%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W ++   P  R     + +  L++   G+     V + VD Y+   + W    +M    
Sbjct: 41  RWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRT-VDSYDPVKDQWTSVANMRD-- 97

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S LG       +Y V G  G       +     + ++ +W  + P+   R +    + 
Sbjct: 98  RRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV 154

Query: 221 RGRLHVMGGSGEN---------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRAC 271
            G L+ +GG              Y    + W+               E+   R G     
Sbjct: 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY------------IAEMSTRRSGA--GV 200

Query: 272 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDS 330
            V+++ L  +GG +G               R  V VYD          W+ +  M     
Sbjct: 201 GVLNNLLYAVGGHDGP------------LVRKSVEVYD-----PTTNAWRQVADMNMC-- 241

Query: 331 HIEFAWVLVNNSIVIVGG 348
                   VN  + +VGG
Sbjct: 242 RRNAGVCAVNGLLYVVGG 259

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 93.9 bits (234), Expect = 6e-22
 Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 36/237 (15%)

Query: 115 GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYI 174
              + +  L+ V  G      + S V+ Y+F +  W    ++P        GMV     +
Sbjct: 9   RTPMNLPKLMVVVGGQAP-KAIRS-VECYDFKEERWHQVAELP--SRRCRAGMVYMAGLV 64

Query: 175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR 234
           + V G  G             D    +W  +  +   R      +  G L+ +GG   + 
Sbjct: 65  FAVGGFNG---SLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121

Query: 235 YTPEVDHWSLAVKDGKPLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP 292
               V+ ++           EW     +   R        VV   L  +GG         
Sbjct: 122 GLSSVEAYN-------IKSNEWFHVAPMNTRRSSV--GVGVVGGLLYAVGG--------- 163

Query: 293 GSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
                     +      V   +    +W  +  M    S       ++NN +  VGG
Sbjct: 164 ------YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG--AGVGVLNNLLYAVGG 212

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 88.9 bits (221), Expect = 4e-20
 Identities = 44/251 (17%), Positives = 73/251 (29%), Gaps = 44/251 (17%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W  +      R    A  +  LLY   G+       S V+ YN   N W     M    
Sbjct: 88  QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMNT-- 144

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S +G+   G  +Y V G Y    R   +     +  T +W  +  +   R      + 
Sbjct: 145 RRSSVGVGVVGGLLYAV-GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL 203

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 273
              L+ +GG            Y P  + W                ++ + R         
Sbjct: 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV------------ADMNMCRRNA--GVCA 249

Query: 274 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHI 332
           V+  L V+GG +G                  V  Y+         KW V+ S        
Sbjct: 250 VNGLLYVVGGDDGS------------CNLASVEYYN-----PTTDKWTVVSSCM-STGRS 291

Query: 333 EFAWVLVNNSI 343
                +++  +
Sbjct: 292 YAGVTVIDKRL 302

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  110 bits (277), Expect = 6e-28
 Identities = 45/259 (17%), Positives = 79/259 (30%), Gaps = 50/259 (19%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN---TWGGRFDMP 157
           +W  + +    R   A++ + + +YV  GY     + S V+  ++T +    W     M 
Sbjct: 42  EWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMN 100

Query: 158 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPAT 217
                   G  T G  IYV  G  G             D    +W  L  +   R     
Sbjct: 101 V--RRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQWSMLGDMQTAREGAGL 155

Query: 218 QLWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRA 270
            +  G ++ +GG           +Y P   HW+              T +   R G    
Sbjct: 156 VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN------------VTPMATKRSGA--G 201

Query: 271 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD 329
             +++D + V+GG +G                       V   +     W  + SM  P 
Sbjct: 202 VALLNDHIYVVGGFDGT-----------------AHLSSVEAYNIRTDSWTTVTSMTTP- 243

Query: 330 SHIEFAWVLVNNSIVIVGG 348
                   ++   +  + G
Sbjct: 244 -RCYVGATVLRGRLYAIAG 261

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 93.5 bits (233), Expect = 8e-22
 Identities = 44/238 (18%), Positives = 73/238 (30%), Gaps = 45/238 (18%)

Query: 99  ELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR 158
           +  W  +    V R    A  + +++YV  G+       S ++ Y+   + W    DM  
Sbjct: 90  DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS-MERYDPNIDQWSMLGDMQT 148

Query: 159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ 218
             A    G+V     IY + G  G      +   +  D  T  W ++ P+   R      
Sbjct: 149 --AREGAGLVVASGVIYCLGGYDGLNIL-NSVEKY--DPHTGHWTNVTPMATKRSGAGVA 203

Query: 219 LWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRAC 271
           L    ++V+GG            Y    D W+              T +  PR       
Sbjct: 204 LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV------------TSMTTPRCYV--GA 249

Query: 272 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKP 328
            V+  RL  I G                      +   +   D  +  W+V+ SM   
Sbjct: 250 TVLRGRLYAIAG-----------------YDGNSLLSSIECYDPIIDSWEVVTSMGTQ 290

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 53/251 (21%), Positives = 81/251 (32%), Gaps = 50/251 (19%)

Query: 109 PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168
             PR   A +    +L V  G+GS       V+ Y+     W     +       ++  V
Sbjct: 3   QGPRT-RARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT--RKRRYVASV 59

Query: 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK---WQDLPPLPVPRYAPATQLWRGRLH 225
           +    IYV+ G  G   R   +    LD    +   W  + P+ V R           ++
Sbjct: 60  SLHDRIYVIGGYDG---RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIY 116

Query: 226 VMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRL 278
           V GG   +       RY P +D WS+       +           R G     VV    +
Sbjct: 117 VSGGFDGSRRHTSMERYDPNIDQWSML----GDM--------QTAREGA--GLVVASGVI 162

Query: 279 LVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWV 337
             +GG +G             +  N V  YD          W  +  M    S       
Sbjct: 163 YCLGGYDGL------------NILNSVEKYD-----PHTGHWTNVTPMATKRSG--AGVA 203

Query: 338 LVNNSIVIVGG 348
           L+N+ I +VGG
Sbjct: 204 LLNDHIYVVGG 214

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 27/183 (14%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W  +      R     +    ++Y   GY  ++ ++S V+ Y+     W     M    
Sbjct: 139 QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNS-VEKYDPHTGHWTNVTPMA--T 195

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S  G+     +IYVV G  G       +     +  T  W  +  +  PR      + 
Sbjct: 196 KRSGAGVALLNDHIYVVGGFDGTAH---LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL 252

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 273
           RGRL+ + G   N        Y P +D W +             T +   R        V
Sbjct: 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV------------TSMGTQRCDA--GVCV 298

Query: 274 VDD 276
           + +
Sbjct: 299 LRE 301

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222
           +   +  +   + VV G    Q   P       D +T++W  LP +   R   A+     
Sbjct: 7   TRARLGANEV-LLVVGGFGSQQS--PIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63

Query: 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLV 280
           R++V+GG         V+       +    +  W +   + + RG        + D + V
Sbjct: 64  RIYVIGGYDGRSRLSSVECLDYTADE----DGVWYSVAPMNVRRGLA--GATTLGDMIYV 117

Query: 281 IGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLV 339
            GG +G              R   +  YD    +D   +W +L  M           V+ 
Sbjct: 118 SGGFDGS------------RRHTSMERYD--PNID---QWSMLGDMQTAREG--AGLVVA 158

Query: 340 NNSIVIVGGTTEKHP 354
           +  I  +GG    + 
Sbjct: 159 SGVIYCLGGYDGLNI 173

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  110 bits (278), Expect = 7e-28
 Identities = 43/259 (16%), Positives = 80/259 (30%), Gaps = 40/259 (15%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID--YVHSHVDIYNFTDNTWGGRFDMPR 158
           +W  M   P PR      +  N +YV  G    D       V  Y+     WG    +P 
Sbjct: 78  EWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY 137

Query: 159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ 218
                   +++    +YV+ G+     R       V D +  +W++L P+   R      
Sbjct: 138 --VVYGHTVLSHMDLVYVIGGKGSD--RKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT 193

Query: 219 LWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRAC 271
           +  GR+ V  G  +         Y+   + W+                 P  R     + 
Sbjct: 194 VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF------------EAFPQERSSL--SL 239

Query: 272 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKPDS 330
           V +   L  IGG              +         +D++  ++E  KW+ +       +
Sbjct: 240 VSLVGTLYAIGGFATLET--------ESGELVPTELNDIWRYNEEEKKWEGVLREIAYAA 291

Query: 331 HIEFAWVLVNNSIVIVGGT 349
                   +   + ++  T
Sbjct: 292 ----GATFLPVRLNVLRLT 306

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  108 bits (271), Expect = 7e-27
 Identities = 48/287 (16%), Positives = 90/287 (31%), Gaps = 51/287 (17%)

Query: 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGY-----GSIDYVHSHVDIYNFTDNTWGGRFDM 156
           +    ++ VP+   + +  +N ++V  G         D + ++   ++  D+ W G   +
Sbjct: 26  YCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P        G+      IYVV G+               D  + KW +  PLP   Y   
Sbjct: 86  PS--PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT 143

Query: 217 TQLWRGRLHVMGGSGEN--------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH 268
                  ++V+GG G +         Y P+   W                 +   R    
Sbjct: 144 VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE------------LAPMQTARSLF- 190

Query: 269 RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPK 327
               V D R++V  G                   +   VY        + KW    + P+
Sbjct: 191 -GATVHDGRIIVAAGVTDT------------GLTSSAEVYS-----ITDNKWAPFEAFPQ 232

Query: 328 PDSHIEFAWVLVNNSIVIVGG--TTEKHPTTKKMVLVGEIFQFNLNT 372
                  + V +  ++  +GG  T E          + +I+++N   
Sbjct: 233 E--RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 95.5 bits (238), Expect = 2e-22
 Identities = 36/191 (18%), Positives = 58/191 (30%), Gaps = 13/191 (6%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           KW +    P        +   +L+YV  G GS     + + +Y+     W     M    
Sbjct: 128 KWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ--T 185

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
           A S  G       I V  G         T+   V      KW      P  R + +    
Sbjct: 186 ARSLFGATVHDGRIIVAAGVTDTGL---TSSAEVYSITDNKWAPFEAFPQERSSLSLVSL 242

Query: 221 RGRLHVMGG-SGENRYTPEVDHWSLA---VKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
            G L+ +GG +     + E+    L      +    EK+W   +             +  
Sbjct: 243 VGTLYAIGGFATLETESGELVPTELNDIWRYN--EEEKKWEGVLREIA--YAAGATFLPV 298

Query: 277 RLLVIGGQEGD 287
           RL V+   +  
Sbjct: 299 RLNVLRLTKMA 309

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 27/129 (20%)

Query: 221 RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLV 280
           +  + ++   G   Y P  +    A                +P+   H + V  ++++ V
Sbjct: 4   QDLIFMISEEGAVAYDPAANECYCASLS-----------SQVPKN--HVSLVTKENQVFV 50

Query: 281 IGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLV 339
            GG   +              + + +       D  + +W  +P +P P     F     
Sbjct: 51  AGGLFYN-----------EDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL--FGLGEA 97

Query: 340 NNSIVIVGG 348
            NSI +VGG
Sbjct: 98  LNSIYVVGG 106

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  110 bits (277), Expect = 7e-28
 Identities = 48/260 (18%), Positives = 79/260 (30%), Gaps = 51/260 (19%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
            W  ++     R D A +   N++Y+  G          +D YN   ++W  +   P   
Sbjct: 35  SWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPI--KRMDCYNVVKDSWYSKLGPP--T 90

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
               L        IY   G             +  DT T+ W   P +   R +      
Sbjct: 91  PRDSLAACAAEGKIYTSGGSEVGNSALYLFECY--DTRTESWHTKPSMLTQRCSHGMVEA 148

Query: 221 RGRLHVMGGSGEN-----------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHR 269
            G ++V GGS  N            Y P  + W+                +   R     
Sbjct: 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE------------LCPMIEARKNH-- 194

Query: 270 ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKP 328
             V V D++  +GGQ G                     D+V   D    +WK++  MP  
Sbjct: 195 GLVFVKDKIFAVGGQNGL-----------------GGLDNVEYYDIKLNEWKMVSPMPWK 237

Query: 329 DSHIEFAWVLVNNSIVIVGG 348
              +      V + + ++ G
Sbjct: 238 --GVTVKCAAVGSIVYVLAG 255

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 97.4 bits (243), Expect = 4e-23
 Identities = 39/243 (16%), Positives = 62/243 (25%), Gaps = 47/243 (19%)

Query: 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ 180
              + +F G             +N  D +W                 V     +Y++ G 
Sbjct: 12  DYRIALFGGSQP-----QSCRYFNPKDYSWTDIRCPF--EKRRDAACVFWDNVVYILGGS 64

Query: 181 YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN------- 233
                  P       +     W      P PR + A     G+++  GGS          
Sbjct: 65  QL----FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLF 120

Query: 234 -RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP 292
             Y    + W         +           R       V  +  + V GG  G+     
Sbjct: 121 ECYDTRTESWHTK----PSM--------LTQRCSH--GMVEANGLIYVCGGSLGN----- 161

Query: 293 GSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEK 352
            +   +     E VYD     +    W  L  M +   +     V V + I  VGG    
Sbjct: 162 -NVSGRVLNSCE-VYD--PATE---TWTELCPMIEARKN--HGLVFVKDKIFAVGGQNGL 212

Query: 353 HPT 355
              
Sbjct: 213 GGL 215

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 85.8 bits (213), Expect = 4e-19
 Identities = 27/190 (14%), Positives = 56/190 (29%), Gaps = 19/190 (10%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVH---SHVDIYNFTDNTWGGRFDMP 157
            W    +    R     ++   L+YV  G    +      +  ++Y+    TW     M 
Sbjct: 129 SWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI 188

Query: 158 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPAT 217
              A  + G+V     I+ V GQ G        +    D +  +W+ + P+P        
Sbjct: 189 --EARKNHGLVFVKDKIFAVGGQNGLGG---LDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243

Query: 218 QLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDR 277
                 ++V+ G         +  ++           +W     +         + V   
Sbjct: 244 AAVGSIVYVLAGFQGVGRLGHILEYN-------TETDKWVANSKVRAFPVTSCLICV--- 293

Query: 278 LLVIGGQEGD 287
            +   G   +
Sbjct: 294 -VDTCGANEE 302

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  106 bits (266), Expect = 3e-26
 Identities = 46/261 (17%), Positives = 81/261 (31%), Gaps = 50/261 (19%)

Query: 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGY-----GSIDYVHSHVDIYNFTDNTWGGRFDM 156
           +    A  +PR   + +  +N +YV  G           + S+    +   + W G   +
Sbjct: 37  YLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL 96

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P   A    G+      IYVV G    Q           D    KW ++  LP+  Y   
Sbjct: 97  PS--ARCLFGLGEVDDKIYVVAG-KDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN 153

Query: 217 TQLWRGRLHVMGGSGEN--------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH 268
                G ++ +GG  ++         Y P+   W                 +  PR    
Sbjct: 154 VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD------------LAPMKTPRSMF- 200

Query: 269 RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPK 327
               +   ++++ GG   D                 V  +D         KW+V+   P+
Sbjct: 201 -GVAIHKGKIVIAGGVTED------------GLSASVEAFD-----LKTNKWEVMTEFPQ 242

Query: 328 PDSHIEFAWVLVNNSIVIVGG 348
                  + V +  S+  +GG
Sbjct: 243 E--RSSISLVSLAGSLYAIGG 261

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  100 bits (252), Expect = 3e-24
 Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 35/239 (14%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGY-GSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
           +W  +   P  R      ++ + +YV AG     +     V  Y+     W    ++P  
Sbjct: 89  EWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI- 147

Query: 160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                  +++    IY + G+   +        +  + +   W+DL P+  PR      +
Sbjct: 148 -KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIY--NPKKGDWKDLAPMKTPRSMFGVAI 204

Query: 220 WRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 272
            +G++ + GG  E+        +  + + W +             TE P  R     + V
Sbjct: 205 HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM------------TEFPQERSSI--SLV 250

Query: 273 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKPDS 330
            +   L  IGG              +         +D++  +D+  +W  +    +  S
Sbjct: 251 SLAGSLYAIGGFAMIQ--------LESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYAS 301

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 7/185 (3%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           KW ++K  P+       I    ++Y   G        + V IYN     W     M    
Sbjct: 138 KWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK--T 195

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S  G+      I +  G         +A     D +T KW+ +   P  R + +    
Sbjct: 196 PRSMFGVAIHKGKIVIAGGVTEDGL---SASVEAFDLKTNKWEVMTEFPQERSSISLVSL 252

Query: 221 RGRLHVMGG-SGENRYTPEVDHWSLA-VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRL 278
            G L+ +GG +     + E     +  +   +  +KEW   +   R     +C+     L
Sbjct: 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNL 312

Query: 279 LVIGG 283
             +  
Sbjct: 313 FKLSK 317

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 251 PLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD 309
           P+E E        +   + + +V   +++ V+GG   D              +++ +   
Sbjct: 31  PMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDE-----------ENKDQPLQSY 79

Query: 310 VYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
            + LD    +W  LP +P       F    V++ I +V G
Sbjct: 80  FFQLDNVSSEWVGLPPLPSARCL--FGLGEVDDKIYVVAG 117

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 83.6 bits (206), Expect = 1e-17
 Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 22/200 (11%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTW-----GGRF 154
           +W  +K+    R   +A  + +  + +  G      +     +YN T+  +        F
Sbjct: 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAML----LYNVTEEIFKDVTPKDEF 534

Query: 155 DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ-----DLPPLP 209
                ++          + I +  G          A  F  D E           L    
Sbjct: 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL 594

Query: 210 VPRY-APATQLWRGRLHVMGG-SGENRYTPEVDHWSLAVKDGK----PLEKEWRTEIPIP 263
             RY +    +   +L ++GG S    +       SL          P+ +    +  + 
Sbjct: 595 FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLM 654

Query: 264 RGGPHRACVVVDDRLLVIGG 283
             G           + +IGG
Sbjct: 655 LAG-FSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 80.2 bits (197), Expect = 2e-16
 Identities = 36/281 (12%), Positives = 84/281 (29%), Gaps = 45/281 (16%)

Query: 108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW--------GGRFDMPRE 159
            P+ R  G      N ++   G     Y  + +   +   +               + R 
Sbjct: 384 CPINRKFGDVDVAGNDVFYMGGS--NPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR- 440

Query: 160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP-ATQ 218
           M H+    ++    + ++ G+  P      +  ++ D +T++W  +  L   R+   A  
Sbjct: 441 MCHT-FTTISRNNQLLLIGGRKAPH--QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACS 497

Query: 219 LWRGRLHVMGGSGEN----RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV-V 273
           L  G + ++GG  E      Y    + +          +   + E               
Sbjct: 498 LPDGNVLILGGVTEGPAMLLYNVTEEIFK---------DVTPKDEFFQNSLVSAGLEFDP 548

Query: 274 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIE 333
           V  + +++GG   D            +  ++ +       +      V+  +  P     
Sbjct: 549 VSKQGIILGGGFMDQT----------TVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY 598

Query: 334 F--AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372
                 +    ++IVGGT+      +       I   +  +
Sbjct: 599 GSQIKYITPRKLLIVGGTSPSGLFDRTN----SIISLDPLS 635

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 77.5 bits (190), Expect = 2e-15
 Identities = 32/272 (11%), Positives = 66/272 (24%), Gaps = 51/272 (18%)

Query: 101 KWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP- 157
                   PV R+      I   N L +  G  +     S   I++     W     +  
Sbjct: 429 IEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH 488

Query: 158 -REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRY 213
            R     H         + ++ G              + +   + ++D+ P         
Sbjct: 489 TR---FRHSACSLPDGNVLILGG------VTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL 539

Query: 214 APATQLWRGRLH---VMGG--SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH 268
             A   +        ++GG    +   + +   +     D +   +       +      
Sbjct: 540 VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY---DAENATEPITVIKKLQHPLFQ 596

Query: 269 R----ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD-DVYMLDDE-MKWKVL 322
           R       +   +LL++GG                S          +  LD        +
Sbjct: 597 RYGSQIKYITPRKLLIVGG---------------TSPSGLFDRTNSIISLDPLSETLTSI 641

Query: 323 PSMPKPDSHIEFAWV------LVNNSIVIVGG 348
           P   +                    +I I+GG
Sbjct: 642 PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 19/154 (12%), Positives = 39/154 (25%), Gaps = 21/154 (13%)

Query: 99  ELKWEKMK---AAPVPRLDGAAIQI----KNLLYVFAGYGSIDYVHSHVDIYNFTDNTW- 150
           E  ++ +          L  A ++     K  + +  G+     V     I+ +      
Sbjct: 522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT 581

Query: 151 -----GGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205
                  +   P    +         R + +V G         T     LD  ++    +
Sbjct: 582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI 641

Query: 206 PPLPVPRYAP--------ATQLWRGRLHVMGGSG 231
           P                       G +H++GG  
Sbjct: 642 PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 56.1 bits (134), Expect = 9e-09
 Identities = 31/264 (11%), Positives = 77/264 (29%), Gaps = 26/264 (9%)

Query: 101 KWEKMKAAPVPRLD-GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW--GGRFDMP 157
            W       V R    +A      ++   G  S      + ++Y+ +  TW       + 
Sbjct: 276 SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335

Query: 158 REMAHSHLGMVTDGRYIYVVTGQYGP--QCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 215
             +     G+     + ++   + G   Q    TA  +   + +   +        R   
Sbjct: 336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 395

Query: 216 ATQL---------WRGRLHVMGGSGENRYTP-EVDHWSLAVKDGKPLEKEWRTEIPIPRG 265
              +          +G++   GGS + + +    +   + + +             +   
Sbjct: 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 455

Query: 266 -GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS 324
              H + V+ D    + GGQ      +  +P+F        +Y       ++  +     
Sbjct: 456 RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF-----TPEIYVP-----EQDTFYKQNP 505

Query: 325 MPKPDSHIEFAWVLVNNSIVIVGG 348
                 +   + +L +  +   GG
Sbjct: 506 NSIVRVYHSISLLLPDGRVFNGGG 529

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 135 YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV 194
              +    ++ +      R     +      G+  DG    VVTG            T +
Sbjct: 216 GGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND------AKKTSL 269

Query: 195 LDTETKKWQDLPPLPVPR-YAPATQLWRGRLHVMGGSGEN--------RYTPEVDHWS 243
            D+ +  W   P + V R Y  +  +  GR+  +GGS            Y+P    W+
Sbjct: 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 30/212 (14%), Positives = 51/212 (24%), Gaps = 43/212 (20%)

Query: 104 KMKAAPVPRLDGAAIQIKNL-LYVFAGYGSIDYVHSHVDIYNFTDNTWGG---------- 152
             K  P+   D   +   +   ++F       +        N+   +  G          
Sbjct: 331 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 390

Query: 153 -RFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD-----TETKKWQDLP 206
            R   P  M  + +        I    G    Q    T +  ++      T         
Sbjct: 391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN 450

Query: 207 PLPVPR-YAPATQLWRGRLHVMGGSGEN-------------RYTPEVDHWSLAVKDGKPL 252
            L   R +  +  L  G   + GG                  Y PE D +          
Sbjct: 451 GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ------- 503

Query: 253 EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQ 284
                    I R     + ++ D R+   GG 
Sbjct: 504 -----NPNSIVRVYHSISLLLPDGRVFNGGGG 530

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 16/163 (9%)

Query: 89  PATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH-------VD 141
             +     A + +  +  A      +           +  G GS DY  S        + 
Sbjct: 377 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG-GSPDYQDSDATTNAHIIT 435

Query: 142 IYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQ---CRGPTAHTFVLD 196
           +     +            A +    V   DG   ++  GQ          P     +  
Sbjct: 436 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYV 494

Query: 197 TETKKWQDLPPLPVPRYAP--ATQLWRGRLHVMGGSGENRYTP 237
            E   +    P  + R     +  L  GR+   GG      T 
Sbjct: 495 PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTT 537

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 36/270 (13%), Positives = 69/270 (25%), Gaps = 79/270 (29%)

Query: 141 DIYNFTDNTWGGRF------DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV 194
            I    D   G             EM    +  V    Y ++++     + R P+  T +
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRM 111

Query: 195 -LDTETKKWQD---LPPLPVPRYAPATQLWRG----R------LHVMGGSGENRYTPEVD 240
            ++   + + D        V R  P  +L +     R      +  + GSG+        
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------- 163

Query: 241 HWSLA---VKDGKPLEKE-----WRTEIPIPRGGPHRACVVVDDRLLVI----GGQEGDF 288
              +A       K   K      W   + +         + +  +LL           D 
Sbjct: 164 -TWVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 289 MAKPGSPI---------FKCSRRNE---VVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW 336
            +     I            S+  E   +V  +V    +   W              F  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNA------------FNL 264

Query: 337 ---VLV---NNSIV-IVGGTTEKHPTTKKM 359
              +L+      +   +   T  H +    
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.98
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.94
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.62
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.61
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.49
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.21
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.2
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.17
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.1
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.85
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.79
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.69
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.67
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.61
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.61
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.59
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.57
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.56
3jro_A	753	Fusion protein of protein transport protein SEC13	96.54
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.5
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.43
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.41
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.34
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.27
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.18
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.17
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.16
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.14
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.12
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.99
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.85
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.72
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.63
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.51
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.5
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.41
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.32
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.29
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.27
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.25
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.18
3jro_A	753	Fusion protein of protein transport protein SEC13	95.15
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.13
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.11
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.06
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	94.99
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	94.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	94.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.71
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	94.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.65
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.63
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.57
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.56
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.55
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.52
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.52
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	94.46
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.46
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	94.38
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.34
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	94.13
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.05
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	93.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	93.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.75
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.73
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	93.61
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.61
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.59
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	93.53
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	93.52
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	93.52
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.43
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.38
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.32
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	93.28
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.27
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	93.12
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	92.98
2pm7_B	297	Protein transport protein SEC13, protein transport	92.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.85
2pm7_B	297	Protein transport protein SEC13, protein transport	92.85
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.81
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	92.78
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	92.77
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	92.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	92.6
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.56
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.55
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	92.43
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	92.4
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	92.38
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	92.24
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	92.03
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	91.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	91.97
3v9f_A	781	Two-component system sensor histidine kinase/RESP	91.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	91.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.8
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	91.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	91.67
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	91.27
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	91.25
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	91.18
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	91.13
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	90.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	90.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	90.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.79
3v9f_A	781	Two-component system sensor histidine kinase/RESP	90.69
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	90.61
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	90.6
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.28
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	90.27
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	89.95
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	89.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	89.71
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	89.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	89.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	89.4
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	89.4
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	89.21
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	89.03
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	88.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	88.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	88.74
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	88.73
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	88.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	88.54
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	88.52
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.5
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	87.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	87.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	87.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	87.19
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	86.45
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	86.41
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	86.34
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	86.27
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	85.84
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	85.26
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	85.21
4a2l_A	795	BT_4663, two-component system sensor histidine kin	85.16
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	84.86
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	84.83
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	84.66
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	84.29
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	84.18
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	83.85
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	83.27
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	82.96
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	82.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	82.66
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	82.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	82.56
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	82.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	82.44
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	81.49
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	81.06
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	80.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	80.8
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	80.6

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=7e-48  Score=357.33  Aligned_cols=293  Identities=16%  Similarity=0.202  Sum_probs=239.2

Q ss_pred             CCCCCceehhHHHHHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccc
Q 016328           11 TTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPA   90 (391)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~   90 (391)
                      +++.+.|.       .|+++.+++.||++||. ....                                         .+
T Consensus         9 ~~~~~~~~-------~~~~~~~~~~i~v~GG~-~~~~-----------------------------------------~~   39 (308)
T 1zgk_A            9 HSSGLVPR-------GSHAPKVGRLIYTAGGY-FRQS-----------------------------------------LS   39 (308)
T ss_dssp             -------------------CCCCCCEEEECCB-SSSB-----------------------------------------CC
T ss_pred             ccCCeeeC-------CccccCCCCEEEEEeCc-CCCC-----------------------------------------cc
Confidence            34555565       89999999999999996 2222                                         12


Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccC---CCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYG---SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~---~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~  167 (391)
                      .++.||+.+++|++++++|.+|.+|+++.++++|||+||..   .....++++++||+.+++|+.+++||.  +|..|++
T Consensus        40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~  117 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV--PRNRIGV  117 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS--CCBTCEE
T ss_pred             eEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCc--CccccEE
Confidence            67788888999999999999999999999999999999983   233346789999999999999999988  7889999


Q ss_pred             EEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeee
Q 016328          168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (391)
Q Consensus       168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  247 (391)
                      ++++++|||+||.++..   ..+++++||+.+++|+.++++|.+|..|++++++++|||+||........+       ++
T Consensus       118 ~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------~~  187 (308)
T 1zgk_A          118 GVIDGHIYAVGGSHGCI---HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-------AE  187 (308)
T ss_dssp             EEETTEEEEECCEETTE---ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCC-------EE
T ss_pred             EEECCEEEEEcCCCCCc---ccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCce-------EE
Confidence            99999999999987654   278999999999999999999999999999999999999999876543333       34


Q ss_pred             cCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC
Q 016328          248 DGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP  326 (391)
Q Consensus       248 ~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~  326 (391)
                      .||+.+++|+.++++|.+|..+++++++++||++||.+...                 ..++++.|| .+++|+.++++|
T Consensus       188 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p  250 (308)
T 1zgk_A          188 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-----------------QLNSVERYDVETETWTFVAPMK  250 (308)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECCCCS
T ss_pred             EEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCC-----------------ccceEEEEeCCCCcEEECCCCC
Confidence            44689999999999999999999999999999999987432                 367899999 999999999998


Q ss_pred             CCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCcccc---ccCCCcccccceeec
Q 016328          327 KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVS---AFYPFNILCHPHVKC  390 (391)
Q Consensus       327 ~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~lp~~~~~~~~~~~  390 (391)
                      .+|..  +++++++++|||+||.+....       .+++++||+++++|   ..||.+|..|+++.+
T Consensus       251 ~~r~~--~~~~~~~~~i~v~GG~~~~~~-------~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~l  308 (308)
T 1zgk_A          251 HRRSA--LGITVHQGRIYVLGGYDGHTF-------LDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT  308 (308)
T ss_dssp             SCCBS--CEEEEETTEEEEECCBCSSCB-------CCEEEEEETTTTEEEEEEECSSCCBSCEEEEC
T ss_pred             CCccc--eEEEEECCEEEEEcCcCCCcc-------cceEEEEcCCCCEEeecCCCCCCcccceeEeC
Confidence            88765  456788999999999876432       25899999976665   578999999999864

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.9e-46  Score=346.58  Aligned_cols=263  Identities=17%  Similarity=0.269  Sum_probs=224.2

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      .+++||+.+++|++++++|.+|..|+++.++++|||+||.+.... ++++++||+.+++|+.+++||.  +|..|+++++
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~  107 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLR-VRTVDSYDPVKDQWTSVANMRD--RRSTLGAAVL  107 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSB-CCCEEEEETTTTEEEEECCCSS--CCBSCEEEEE
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCcc-ccceEEECCCCCceeeCCCCCc--cccceEEEEE
Confidence            577788888999999999999999999999999999999876543 5779999999999999999988  7889999999


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCC
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d  250 (391)
                      +++|||+||.++..   .++++++||+.+++|+.++++|.+|..|++++++++|||+||......     .....++.||
T Consensus       108 ~~~iyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~yd  179 (302)
T 2xn4_A          108 NGLLYAVGGFDGST---GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR-----QCLSTVECYN  179 (302)
T ss_dssp             TTEEEEEEEECSSC---EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTT-----EECCCEEEEE
T ss_pred             CCEEEEEcCCCCCc---cCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCC-----ccccEEEEEe
Confidence            99999999987644   378999999999999999999999999999999999999999854321     1112244556


Q ss_pred             cccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCC
Q 016328          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD  329 (391)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~  329 (391)
                      +.+++|+.++++|.+|..+++++++++||++||.++..                 ..++++.|| .+++|+.++++|.+|
T Consensus       180 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~~~~~~~r  242 (302)
T 2xn4_A          180 ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL-----------------VRKSVEVYDPTTNAWRQVADMNMCR  242 (302)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS-----------------BCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCcEEECCCCccccccccEEEECCEEEEECCCCCCc-----------------ccceEEEEeCCCCCEeeCCCCCCcc
Confidence            99999999999999999999999999999999986432                 356899999 999999999999887


Q ss_pred             CCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccc----cCCCcccccceeec
Q 016328          330 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSA----FYPFNILCHPHVKC  390 (391)
Q Consensus       330 ~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~lp~~~~~~~~~~~  390 (391)
                      ..  ++++.++++|||+||.+....       ..++++||+++++|.    .||.+|..|+++.+
T Consensus       243 ~~--~~~~~~~~~i~v~GG~~~~~~-------~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~  298 (302)
T 2xn4_A          243 RN--AGVCAVNGLLYVVGGDDGSCN-------LASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI  298 (302)
T ss_dssp             BS--CEEEEETTEEEEECCBCSSSB-------CCCEEEEETTTTEEEECSSCCSSCCBSCEEEEE
T ss_pred             cc--CeEEEECCEEEEECCcCCCcc-------cccEEEEcCCCCeEEECCcccCcccccceEEEe
Confidence            65  456889999999999875432       258999999766653    57888999998765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=3.5e-46  Score=345.42  Aligned_cols=265  Identities=19%  Similarity=0.300  Sum_probs=225.2

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      +++.||+.+++|++++++|.+|.+|+++.++++|||+||.+  ...++++++||+.+++|+.++++|.  +|..|+++++
T Consensus        25 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~  100 (306)
T 3ii7_A           25 SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGPPT--PRDSLAACAA  100 (306)
T ss_dssp             SEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECCSS--CCBSCEEEEE
T ss_pred             eEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCCCc--cccceeEEEE
Confidence            67788889999999999999999999999999999999998  4457889999999999999999987  7889999999


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCC
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d  250 (391)
                      +++|||+||.+....  ..+++++||+.+++|+.++++|.+|..|++++++++|||+||.......   ..+...++.||
T Consensus       101 ~~~iyv~GG~~~~~~--~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~~~~~yd  175 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNS--ALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVS---GRVLNSCEVYD  175 (306)
T ss_dssp             TTEEEEECCBBTTBS--CCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTT---CEECCCEEEEE
T ss_pred             CCEEEEECCCCCCCc--EeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCc---ccccceEEEeC
Confidence            999999999873322  3789999999999999999999999999999999999999997644321   01122344556


Q ss_pred             cccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCC
Q 016328          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD  329 (391)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~  329 (391)
                      +++++|+.++++|.+|..+++++++++||++||.+...                 ..++++.|| .+++|+.++++|.+|
T Consensus       176 ~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~~~~p~~r  238 (306)
T 3ii7_A          176 PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLG-----------------GLDNVEYYDIKLNEWKMVSPMPWKG  238 (306)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTE-----------------EBCCEEEEETTTTEEEECCCCSCCB
T ss_pred             CCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCC-----------------CCceEEEeeCCCCcEEECCCCCCCc
Confidence            99999999999999999999999999999999986432                 367899999 999999999999877


Q ss_pred             CCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCcccc---ccCCCcccccceeec
Q 016328          330 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVS---AFYPFNILCHPHVKC  390 (391)
Q Consensus       330 ~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~lp~~~~~~~~~~~  390 (391)
                      ..  +++++++++|||+||.+....       ..+++.||+++.+|   ..||.++..|+++.+
T Consensus       239 ~~--~~~~~~~~~i~v~GG~~~~~~-------~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~  293 (306)
T 3ii7_A          239 VT--VKCAAVGSIVYVLAGFQGVGR-------LGHILEYNTETDKWVANSKVRAFPVTSCLICV  293 (306)
T ss_dssp             SC--CEEEEETTEEEEEECBCSSSB-------CCEEEEEETTTTEEEEEEEEECCSCTTCEEEE
T ss_pred             cc--eeEEEECCEEEEEeCcCCCee-------eeeEEEEcCCCCeEEeCCCcccccceeEEEEE
Confidence            65  456788999999999876532       24899999977665   467889999998764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=2e-45  Score=339.49  Aligned_cols=261  Identities=16%  Similarity=0.255  Sum_probs=225.3

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC---eeeCCCCCCCCCcceEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT---WGGRFDMPREMAHSHLGM  167 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~~~r~~~~~  167 (391)
                      .++.||+.+++|+.++++|.+|.+|+++.++++|||+||.+... ..+++++||+.+++   |+.++++|.  +|..|++
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~~~~~~~~W~~~~~~p~--~r~~~~~  108 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRS-RLSSVECLDYTADEDGVWYSVAPMNV--RRGLAGA  108 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTCCTTCCCEEECCCSS--CCBSCEE
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCc-cCceEEEEECCCCCCCeeEECCCCCC--CccceeE
Confidence            67778888899999999999999999999999999999987544 46789999999999   999999987  7889999


Q ss_pred             EEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeee
Q 016328          168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (391)
Q Consensus       168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  247 (391)
                      +..+++|||+||.++...   .+++++||+.+++|+.++++|.+|..|++++++++||++||.+......+       ++
T Consensus       109 ~~~~~~lyv~GG~~~~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------~~  178 (301)
T 2vpj_A          109 TTLGDMIYVSGGFDGSRR---HTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNS-------VE  178 (301)
T ss_dssp             EEETTEEEEECCBCSSCB---CCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCC-------EE
T ss_pred             EEECCEEEEEcccCCCcc---cceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccce-------EE
Confidence            999999999999886542   78999999999999999999999999999999999999999875443333       34


Q ss_pred             cCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC
Q 016328          248 DGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP  326 (391)
Q Consensus       248 ~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~  326 (391)
                      .||+.+++|+.++++|.++..+++++++++||++||.+...                 ..++++.|| .+++|+.++++|
T Consensus       179 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          179 KYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA-----------------HLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEEECCCS
T ss_pred             EEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc-----------------ccceEEEEeCCCCcEEECCCCC
Confidence            44689999999999999999999999999999999987542                 256899999 999999999998


Q ss_pred             CCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc---cccCCCcccccceeec
Q 016328          327 KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV---SAFYPFNILCHPHVKC  390 (391)
Q Consensus       327 ~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~lp~~~~~~~~~~~  390 (391)
                      .+|..  ++++.++++|||+||.+....       ..+++.||+++.+   ...||.+|..|+++.+
T Consensus       242 ~~r~~--~~~~~~~~~i~v~GG~~~~~~-------~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~  299 (301)
T 2vpj_A          242 TPRCY--VGATVLRGRLYAIAGYDGNSL-------LSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL  299 (301)
T ss_dssp             SCCBS--CEEEEETTEEEEECCBCSSSB-------EEEEEEEETTTTEEEEEEEEEEEEESCEEEEE
T ss_pred             Ccccc--eeEEEECCEEEEEcCcCCCcc-------cccEEEEcCCCCeEEEcCCCCcccccceEEEe
Confidence            88765  456788999999999876531       2589999996655   4578999999999865

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=2.4e-44  Score=334.57  Aligned_cols=271  Identities=17%  Similarity=0.217  Sum_probs=219.3

Q ss_pred             cccccccccCceEEccCC--CCCccCceEEEECCEEEEEeccC-----CCCCCcceeEEEECCCCCeeeCCCCCCCCCcc
Q 016328           91 TFQDLPAPELKWEKMKAA--PVPRLDGAAIQIKNLLYVFAGYG-----SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHS  163 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~vyv~GG~~-----~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~  163 (391)
                      .++.||+.+++|+. +++  |.+|.+|+++.++++|||+||..     ......+++++||+.+++|+.++++|.  +|.
T Consensus        14 ~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~   90 (315)
T 4asc_A           14 GAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS--PRC   90 (315)
T ss_dssp             EEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS--CEE
T ss_pred             ceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc--chh
Confidence            56677888889987 655  55899999999999999999962     223344569999999999999999987  789


Q ss_pred             eEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCC-CCccCCCccce
Q 016328          164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSG-ENRYTPEVDHW  242 (391)
Q Consensus       164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~  242 (391)
                      .|+++.++++|||+||.+........+++++||+.+++|+.++++|.+|..|++++++++|||+||.. ......+    
T Consensus        91 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~----  166 (315)
T 4asc_A           91 LFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNK----  166 (315)
T ss_dssp             SCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCC----
T ss_pred             ceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccce----
Confidence            99999999999999997632212347999999999999999999999999999999999999999983 3333333    


Q ss_pred             EeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEE
Q 016328          243 SLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV  321 (391)
Q Consensus       243 ~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~  321 (391)
                         ++.||+.+++|+.++++|.+|..+++++++++||++||.+...                 ..++++.|| .+++|+.
T Consensus       167 ---~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          167 ---MCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-----------------LTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             ---EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS-----------------EEEEEEEEETTTTEEEE
T ss_pred             ---EEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCC-----------------ccceEEEEECCCCeEEE
Confidence               3444699999999999999999999999999999999986542                 356899999 8999999


Q ss_pred             cCCCCCCCCCceeeEEEECCEEEEEccccCCCC--cccceeEecceEEEecCccccccC-CCcccccceeec
Q 016328          322 LPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHP--TTKKMVLVGEIFQFNLNTLVSAFY-PFNILCHPHVKC  390 (391)
Q Consensus       322 v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~l-p~~~~~~~~~~~  390 (391)
                      ++++|.+|..  ++++.++++|||+||.+....  ........+++|+||+++++|..+ |.+|..|+++.+
T Consensus       227 ~~~~p~~r~~--~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~r~~~~~~~~  296 (315)
T 4asc_A          227 FEAFPQERSS--LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGATFL  296 (315)
T ss_dssp             ECCCSSCCBS--CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCSSCCSSCEEE
T ss_pred             CCCCCCcccc--eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCCcCccceEEe
Confidence            9999888765  456789999999999864211  001113457999999988887654 677888877654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=2.2e-43  Score=328.51  Aligned_cols=286  Identities=18%  Similarity=0.301  Sum_probs=230.7

Q ss_pred             ecCEEEEecCCCCcccceeEeeecCCCCe-ee--cCCCCCCCCceeeEeecC-cccccc---------cccccccccccc
Q 016328           32 VADFFWASSSKFTSSYLNIASNWSPYHNS-II--LPNNGPQKGENIGVKTKK-DVVPKR---------ILPATFQDLPAP   98 (391)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~--lp~~~~r~~~g~~~~~~~-~~~~~~---------~~~~~~~~~d~~   98 (391)
                      .++.||++||.       .++.|||.+++ ..  ++.+.+|..++++...+. +..++.         .+.+.++.||+.
T Consensus        14 ~~~~i~~~GG~-------~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~   86 (318)
T 2woz_A           14 VKDLILLVNDT-------AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNV   86 (318)
T ss_dssp             EEEEEEEECSS-------EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETT
T ss_pred             ecchhhhcccc-------ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCC
Confidence            46799999993       47999999999 33  333567887776655544 555552         233348899999


Q ss_pred             cCceEEccCCCCCccCceEEEECCEEEEEeccCC-CCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEE
Q 016328           99 ELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGS-IDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVV  177 (391)
Q Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~-~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~  177 (391)
                      +++|++++++|.+|..|+++.++++|||+||.+. ....++++++||+.+++|+.++++|.  +|..|++++.+++|||+
T Consensus        87 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~  164 (318)
T 2woz_A           87 SSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGHNVISHNGMIYCL  164 (318)
T ss_dssp             TTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEESCEEEEETTEEEEE
T ss_pred             CCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cccccEEEEECCEEEEE
Confidence            9999999999999999999999999999999863 34457889999999999999999987  78899999999999999


Q ss_pred             eCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCce
Q 016328          178 TGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWR  257 (391)
Q Consensus       178 GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~  257 (391)
                      ||......  ..+++++||+.+++|+.++++|.+|..|++++++++|||+||......       ...++.||+++++|+
T Consensus       165 GG~~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          165 GGKTDDKK--CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL-------SASVEAFDLKTNKWE  235 (318)
T ss_dssp             CCEESSSC--BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEE-------EEEEEEEETTTCCEE
T ss_pred             cCCCCCCC--ccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCc-------cceEEEEECCCCeEE
Confidence            99854432  378999999999999999999999999999999999999999865322       234556679999999


Q ss_pred             eecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeE
Q 016328          258 TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAW  336 (391)
Q Consensus       258 ~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~  336 (391)
                      .++++|.+|..+++++++++||++||.+.....+        ..-.....++++.|| .+++|+.+  +|.+|..  +++
T Consensus       236 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~--------~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~--~~~  303 (318)
T 2woz_A          236 VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLES--------KEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYA--SGA  303 (318)
T ss_dssp             ECCCCSSCCBSCEEEEETTEEEEECCBCCBC------------CCBCCBCCCEEEEETTTTEEEEE--ESCCGGG--TTC
T ss_pred             ECCCCCCcccceEEEEECCEEEEECCeeccCCCC--------ceeccceeeeEEEEeCCCCEehhh--ccccccc--ccc
Confidence            9999999999999999999999999986432100        000012467899999 99999998  6666654  455


Q ss_pred             EEECCEEEEEc
Q 016328          337 VLVNNSIVIVG  347 (391)
Q Consensus       337 ~~~~~~l~i~G  347 (391)
                      ++++++|||+.
T Consensus       304 ~~~~~~iyi~~  314 (318)
T 2woz_A          304 SCLATRLNLFK  314 (318)
T ss_dssp             EEEEEEEEGGG
T ss_pred             eeeCCEEEEEE
Confidence            78999999874

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=3.2e-43  Score=332.62  Aligned_cols=295  Identities=17%  Similarity=0.156  Sum_probs=215.2

Q ss_pred             HHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccc--cCceE
Q 016328           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAP--ELKWE  103 (391)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~--~~~W~  103 (391)
                      .|++++++++||++||.++.                                             ++++||+.  +++|+
T Consensus        12 ~~~~~~~~~~iyv~GG~~~~---------------------------------------------~~~~~d~~~~~~~W~   46 (357)
T 2uvk_A           12 SGTGAIDNDTVYIGLGSAGT---------------------------------------------AWYKLDTQAKDKKWT   46 (357)
T ss_dssp             SCEEEEETTEEEEECGGGTT---------------------------------------------CEEEEETTSSSCCEE
T ss_pred             ceEEEEECCEEEEEeCcCCC---------------------------------------------eEEEEccccCCCCee
Confidence            57888889999999995431                                             45566665  48999


Q ss_pred             EccCCC-CCccCceEEEECCEEEEEecc-C---CCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEe
Q 016328          104 KMKAAP-VPRLDGAAIQIKNLLYVFAGY-G---SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT  178 (391)
Q Consensus       104 ~~~~~p-~~r~~~~~~~~~~~vyv~GG~-~---~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~G  178 (391)
                      ++++|| .+|.+|++++++++|||+||. +   .....++++++||+.+++|+.+++|+ |.+|..|++++.+++|||+|
T Consensus        47 ~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~G  125 (357)
T 2uvk_A           47 ALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTG  125 (357)
T ss_dssp             ECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEE
T ss_pred             ECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEe
Confidence            999999 899999999999999999998 3   23345788999999999999999998 55899999999999999999


Q ss_pred             CccCCCC-------------------------------CCCcceeEEEeCCCCceEECCCCCCCCCC-ceEEEECCEEEE
Q 016328          179 GQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLPVPRYA-PATQLWRGRLHV  226 (391)
Q Consensus       179 G~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~iyv  226 (391)
                      |.++...                               ...++++++||+.+++|+.++++|.+|.. |++++++++|||
T Consensus       126 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv  205 (357)
T 2uvk_A          126 GVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWL  205 (357)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEE
T ss_pred             CcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEE
Confidence            9864310                               01258999999999999999999976554 999999999999


Q ss_pred             EccCCCCccCCCccceEeeeecCCcccCCceeecCCC--CCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCc
Q 016328          227 MGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP--RGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNE  304 (391)
Q Consensus       227 ~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~  304 (391)
                      +||...... ...+   +.++++|+++++|+.++++|  +.+..+++++++++|||+||.+...................
T Consensus       206 ~GG~~~~~~-~~~~---v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~  281 (357)
T 2uvk_A          206 INGEAKPGL-RTDA---VFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGL  281 (357)
T ss_dssp             ECCEEETTE-ECCC---EEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTC
T ss_pred             EeeecCCCc-ccCc---eEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccc
Confidence            999753221 1112   22345567999999998774  55667789999999999999753210000000000000001


Q ss_pred             eecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccccC
Q 016328          305 VVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFY  378 (391)
Q Consensus       305 ~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~l  378 (391)
                      ....+++.|| .+++|+.++++|.+|..  ++++.++++|||+||.+..+..      .++++.++.++.+|..+
T Consensus       282 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~------~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          282 KKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKA------VTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCE------EEEEEEEEC-CCSCEEE
T ss_pred             cceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCE------eeeEEEEEEcCcEeEee
Confidence            1235688999 89999999999988876  4557899999999999865532      25899888887775543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=2.4e-42  Score=321.54  Aligned_cols=271  Identities=19%  Similarity=0.274  Sum_probs=219.8

Q ss_pred             cccccccccCceEEcc-CCCCCccCceEEEECCEEEEEeccCC----C-CCCcceeEEEECCCCCeeeCCCCCCCCCcce
Q 016328           91 TFQDLPAPELKWEKMK-AAPVPRLDGAAIQIKNLLYVFAGYGS----I-DYVHSHVDIYNFTDNTWGGRFDMPREMAHSH  164 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~~~~vyv~GG~~~----~-~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~  164 (391)
                      .++.||+.+++|...+ +.|.+|.+|+++.++++|||+||...    . ....+++++||+.+++|+.++++|.  +|..
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS--ARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS--CBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc--cccc
Confidence            4789999999998843 22478999999999999999999631    1 1234559999999999999999988  7889


Q ss_pred             EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCC-ccCCCccceE
Q 016328          165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN-RYTPEVDHWS  243 (391)
Q Consensus       165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~  243 (391)
                      |++++++++|||+||.+... ....+++++||+.+++|+.++++|.+|..|++++++++|||+||.... ....+     
T Consensus       103 ~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~-----  176 (318)
T 2woz_A          103 FGLGEVDDKIYVVAGKDLQT-EASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR-----  176 (318)
T ss_dssp             CEEEEETTEEEEEEEEBTTT-CCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC-----
T ss_pred             cceEEECCEEEEEcCccCCC-CcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce-----
Confidence            99999999999999986422 123789999999999999999999999999999999999999997432 22222     


Q ss_pred             eeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEc
Q 016328          244 LAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL  322 (391)
Q Consensus       244 ~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v  322 (391)
                        ++.||+.+++|+.++++|.+|..+++++++++||++||.+...                 ..++++.|| .+++|+.+
T Consensus       177 --~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          177 --VFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-----------------LSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             --EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTE-----------------EEEEEEEEETTTCCEEEC
T ss_pred             --EEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCC-----------------ccceEEEEECCCCeEEEC
Confidence              3445699999999999999999999999999999999986432                 466899999 99999999


Q ss_pred             CCCCCCCCCceeeEEEECCEEEEEccccCCCCccc--ceeEecceEEEecCccccccC-CCcccccceeec
Q 016328          323 PSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTK--KMVLVGEIFQFNLNTLVSAFY-PFNILCHPHVKC  390 (391)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~--~~~~~~~v~~~d~~~~~~~~l-p~~~~~~~~~~~  390 (391)
                      +++|.+|..  ++++.++++||++||.+.......  ......++|+||+++++|..+ |.++..|+++.+
T Consensus       238 ~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~r~~~~~~~~  306 (318)
T 2woz_A          238 TEFPQERSS--ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCL  306 (318)
T ss_dssp             CCCSSCCBS--CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEESCCGGGTTCEEE
T ss_pred             CCCCCcccc--eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhcccccccccceee
Confidence            999988765  466889999999999875321110  011246999999998887765 888999998765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.8e-41  Score=309.30  Aligned_cols=286  Identities=15%  Similarity=0.202  Sum_probs=234.8

Q ss_pred             HHhheecCEEEEecCCCCcccceeEeeecCCCCe-eecCC-CCCCCCceeeEeecC-cccccc---cccccccccccccC
Q 016328           27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTKK-DVVPKR---ILPATFQDLPAPEL  100 (391)
Q Consensus        27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~-~~~r~~~g~~~~~~~-~~~~~~---~~~~~~~~~d~~~~  100 (391)
                      +..+.+++.||++||.+. ..++++++||+.+++ ..++. +.+|..++++...+. +..++.   ...+.++.||+.++
T Consensus         9 r~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~   87 (302)
T 2xn4_A            9 RTPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKD   87 (302)
T ss_dssp             ------CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTT
T ss_pred             CcccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCC
Confidence            344567899999999764 467899999999999 77766 678888877666444 555553   23357899999999


Q ss_pred             ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCc
Q 016328          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ  180 (391)
Q Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~  180 (391)
                      +|++++++|.+|..|+++.++++|||+||.+... .++++++||+.+++|+.++++|.  +|..|++++++++|||+||.
T Consensus        88 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~  164 (302)
T 2xn4_A           88 QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVVGGLLYAVGGY  164 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCE
T ss_pred             ceeeCCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC--cccCceEEEECCEEEEEeCC
Confidence            9999999999999999999999999999987654 36789999999999999999987  78899999999999999998


Q ss_pred             cCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeec
Q 016328          181 YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI  260 (391)
Q Consensus       181 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~  260 (391)
                      ++... ...+++++||+++++|+.++++|.+|..|++++++++|||+||.+......+       ++.||+++++|+.++
T Consensus       165 ~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------~~~yd~~~~~W~~~~  236 (302)
T 2xn4_A          165 DVASR-QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKS-------VEVYDPTTNAWRQVA  236 (302)
T ss_dssp             ETTTT-EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCC-------EEEEETTTTEEEEEC
T ss_pred             CCCCC-ccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccce-------EEEEeCCCCCEeeCC
Confidence            76531 2368899999999999999999999999999999999999999875433333       344568999999999


Q ss_pred             CCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC-CCCCCCCCceeeEEE
Q 016328          261 PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP-SMPKPDSHIEFAWVL  338 (391)
Q Consensus       261 ~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~-~~~~~~~~~~~~~~~  338 (391)
                      ++|..|..++++.++++||++||.++..                 ..++++.|| .+++|+.++ +||.+|..+  ++++
T Consensus       237 ~~~~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~~r~~~--~~~~  297 (302)
T 2xn4_A          237 DMNMCRRNAGVCAVNGLLYVVGGDDGSC-----------------NLASVEYYNPTTDKWTVVSSCMSTGRSYA--GVTV  297 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECSSCCSSCCBSC--EEEE
T ss_pred             CCCCccccCeEEEECCEEEEECCcCCCc-----------------ccccEEEEcCCCCeEEECCcccCcccccc--eEEE
Confidence            9999999999999999999999986442                 356799999 999999997 788887654  5577


Q ss_pred             ECCEE
Q 016328          339 VNNSI  343 (391)
Q Consensus       339 ~~~~l  343 (391)
                      ++++|
T Consensus       298 ~~~~i  302 (302)
T 2xn4_A          298 IDKRL  302 (302)
T ss_dssp             EEC--
T ss_pred             ecccC
Confidence            77765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=7.9e-42  Score=317.60  Aligned_cols=290  Identities=17%  Similarity=0.243  Sum_probs=234.3

Q ss_pred             eecCEEEEecCCCCcccceeEeeecCCCCe---eecCCCCCCCCceeeEeecC-cccccc---------ccccccccccc
Q 016328           31 LVADFFWASSSKFTSSYLNIASNWSPYHNS---IILPNNGPQKGENIGVKTKK-DVVPKR---------ILPATFQDLPA   97 (391)
Q Consensus        31 ~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~---~~lp~~~~r~~~g~~~~~~~-~~~~~~---------~~~~~~~~~d~   97 (391)
                      .+++.||++||       ++++.|||.+++   ..+|.+.+|..++.+...+. +..++.         ...+.++.||+
T Consensus         2 ~~~~~l~~~GG-------~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~   74 (315)
T 4asc_A            2 FLQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH   74 (315)
T ss_dssp             CCEEEEEEEET-------TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred             ccceEEEEEcC-------CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence            35789999999       579999999999   33333557888777765555 555552         23345899999


Q ss_pred             ccCceEEccCCCCCccCceEEEECCEEEEEeccC--CCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEE
Q 016328           98 PELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYG--SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIY  175 (391)
Q Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~--~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iy  175 (391)
                      .+++|++++++|.+|.+|+++.++++|||+||.+  .....++++++||+.+++|+.++++|.  +|..|+++.++++||
T Consensus        75 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iy  152 (315)
T 4asc_A           75 LDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVYGHTVLSHMDLVY  152 (315)
T ss_dssp             TTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEE
T ss_pred             CCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--cccceeEEEECCEEE
Confidence            9999999999999999999999999999999975  234557889999999999999999988  789999999999999


Q ss_pred             EEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCC
Q 016328          176 VVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE  255 (391)
Q Consensus       176 v~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~  255 (391)
                      |+||......  ..+++++||+.+++|+.+++||.+|..|++++++++|||+||......       ...++.||+++++
T Consensus       153 v~GG~~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~yd~~~~~  223 (315)
T 4asc_A          153 VIGGKGSDRK--CLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGL-------TSSAEVYSITDNK  223 (315)
T ss_dssp             EECCBCTTSC--BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSE-------EEEEEEEETTTTE
T ss_pred             EEeCCCCCCc--ccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCc-------cceEEEEECCCCe
Confidence            9999844332  379999999999999999999999999999999999999999865432       2345566799999


Q ss_pred             ceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCcee
Q 016328          256 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (391)
Q Consensus       256 W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~  334 (391)
                      |+.++++|.+|..+++++++++||++||.+.....+        ........++++.|| .+++|+.+  ++.||..  +
T Consensus       224 W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~--------~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~--~  291 (315)
T 4asc_A          224 WAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETES--------GELVPTELNDIWRYNEEEKKWEGV--LREIAYA--A  291 (315)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTT--------SCEEEEEEEEEEEEETTTTEEEEE--ESCSSCC--S
T ss_pred             EEECCCCCCcccceeEEEECCEEEEECCccccCcCC--------ccccccccCcEEEecCCCChhhhh--ccCCcCc--c
Confidence            999999999999999999999999999985321000        000112467899999 89999999  4555655  4


Q ss_pred             eEEEECCEEEEEcccc
Q 016328          335 AWVLVNNSIVIVGGTT  350 (391)
Q Consensus       335 ~~~~~~~~l~i~GG~~  350 (391)
                      ++++++++||++....
T Consensus       292 ~~~~~~~~l~v~~~~~  307 (315)
T 4asc_A          292 GATFLPVRLNVLRLTK  307 (315)
T ss_dssp             SCEEEEEEECGGGSEE
T ss_pred             ceEEeCCEEEEEEehh
Confidence            5688999999987644

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=6.5e-41  Score=310.49  Aligned_cols=242  Identities=18%  Similarity=0.250  Sum_probs=206.2

Q ss_pred             HHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEc
Q 016328           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM  105 (391)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~  105 (391)
                      .|+++++++.||++||.....                                     ......+.++.||+.+++|+++
T Consensus        63 ~~~~~~~~~~lyv~GG~~~~~-------------------------------------~~~~~~~~~~~~d~~~~~W~~~  105 (308)
T 1zgk_A           63 GLAGCVVGGLLYAVGGRNNSP-------------------------------------DGNTDSSALDCYNPMTNQWSPC  105 (308)
T ss_dssp             SCEEEEETTEEEEECCEEEET-------------------------------------TEEEECCCEEEEETTTTEEEEC
T ss_pred             cceEEEECCEEEEECCCcCCC-------------------------------------CCCeecceEEEECCCCCeEeEC
Confidence            789999999999999953100                                     0001123678888899999999


Q ss_pred             cCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCC
Q 016328          106 KAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC  185 (391)
Q Consensus       106 ~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~  185 (391)
                      +++|.+|..|+++.++++|||+||.+... .++++++||+.+++|+.++++|.  +|..|++++++++||++||.++...
T Consensus       106 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~  182 (308)
T 1zgk_A          106 APMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVLNRLLYAVGGFDGTNR  182 (308)
T ss_dssp             CCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSSCB
T ss_pred             CCCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECCCCCc--cccceEEEEECCEEEEEeCCCCCCc
Confidence            99999999999999999999999987644 35779999999999999999987  7889999999999999999876543


Q ss_pred             CCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCC
Q 016328          186 RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG  265 (391)
Q Consensus       186 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~  265 (391)
                         .+++++||+.+++|+.+++||.+|..|++++++++|||+||........+       ++.||+++++|+.++++|.+
T Consensus       183 ---~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------v~~yd~~~~~W~~~~~~p~~  252 (308)
T 1zgk_A          183 ---LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNS-------VERYDVETETWTFVAPMKHR  252 (308)
T ss_dssp             ---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCC-------EEEEETTTTEEEECCCCSSC
T ss_pred             ---CceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccce-------EEEEeCCCCcEEECCCCCCC
Confidence               78999999999999999999999999999999999999999875433333       34446899999999999999


Q ss_pred             CcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCcee
Q 016328          266 GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (391)
Q Consensus       266 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~  334 (391)
                      |..+++++++++||++||.++..                 ..++++.|| .+++|+.+++||.+|..+++
T Consensus       253 r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  305 (308)
T 1zgk_A          253 RSALGITVHQGRIYVLGGYDGHT-----------------FLDSVECYDPDTDTWSEVTRMTSGRSGVGV  305 (308)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSC-----------------BCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             ccceEEEEECCEEEEEcCcCCCc-----------------ccceEEEEcCCCCEEeecCCCCCCccccee
Confidence            99999999999999999986532                 467899999 99999999999998877644

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=307.60  Aligned_cols=274  Identities=16%  Similarity=0.200  Sum_probs=234.0

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-eecCC-CCCCCCceeeEeecC-cccccc--cccccccccccccCceEEccC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTKK-DVVPKR--ILPATFQDLPAPELKWEKMKA  107 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~-~~~r~~~g~~~~~~~-~~~~~~--~~~~~~~~~d~~~~~W~~~~~  107 (391)
                      .+.||++||...   ++++++|||.+++ ..+++ +.+|..++++...+. +..++.  ...+.++.||+.+++|+++++
T Consensus        11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CCEEEEEECCSS---TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             cceEEEEeCCCC---CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            589999999766   6799999999999 77777 778888888776555 666553  234578999999999999999


Q ss_pred             CCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCC-C
Q 016328          108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC-R  186 (391)
Q Consensus       108 ~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~-~  186 (391)
                      +|.+|..|+++.++++|||+||.+.....++++++||+.+++|+.++++|.  +|..|+++.++++|||+||.++... .
T Consensus        88 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRCSHGMVEANGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCEESCTTTC
T ss_pred             CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--CcceeEEEEECCEEEEECCCCCCCCcc
Confidence            999999999999999999999997555567889999999999999999988  7889999999999999999876542 1


Q ss_pred             CCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCC
Q 016328          187 GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG  266 (391)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~  266 (391)
                      ...+++++||+++++|+.++++|.+|..|++++++++|||+||........+       ++.||+++++|+.++++|.++
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~-------~~~yd~~~~~W~~~~~~p~~r  238 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDN-------VEYYDIKLNEWKMVSPMPWKG  238 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCC-------EEEEETTTTEEEECCCCSCCB
T ss_pred             cccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCce-------EEEeeCCCCcEEECCCCCCCc
Confidence            1268999999999999999999999999999999999999999865433333       344569999999999999999


Q ss_pred             cceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceee
Q 016328          267 PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFA  335 (391)
Q Consensus       267 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~  335 (391)
                      ..+++++++++||++||.++..                 ..++++.|| .+++|+.++++|.+|..++.+
T Consensus       239 ~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  291 (306)
T 3ii7_A          239 VTVKCAAVGSIVYVLAGFQGVG-----------------RLGHILEYNTETDKWVANSKVRAFPVTSCLI  291 (306)
T ss_dssp             SCCEEEEETTEEEEEECBCSSS-----------------BCCEEEEEETTTTEEEEEEEEECCSCTTCEE
T ss_pred             cceeEEEECCEEEEEeCcCCCe-----------------eeeeEEEEcCCCCeEEeCCCcccccceeEEE
Confidence            9999999999999999986542                 356899999 999999999999888876543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.6e-40  Score=302.97  Aligned_cols=238  Identities=19%  Similarity=0.284  Sum_probs=204.9

Q ss_pred             HHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCc---e
Q 016328           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELK---W  102 (391)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~---W  102 (391)
                      .|+++++++.||++||.++...++                                         .++.||+.+++   |
T Consensus        55 ~~~~~~~~~~l~v~GG~~~~~~~~-----------------------------------------~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           55 YVASVSLHDRIYVIGGYDGRSRLS-----------------------------------------SVECLDYTADEDGVW   93 (301)
T ss_dssp             SCEEEEETTEEEEECCBCSSCBCC-----------------------------------------CEEEEETTCCTTCCC
T ss_pred             cccEEEECCEEEEEcCCCCCccCc-----------------------------------------eEEEEECCCCCCCee
Confidence            789999999999999966544333                                         56666777777   9


Q ss_pred             EEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccC
Q 016328          103 EKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYG  182 (391)
Q Consensus       103 ~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~  182 (391)
                      +.++++|.+|..|+++.++++|||+||.+.... ++++++||+.+++|+.++++|.  +|..|++++++++||++||.++
T Consensus        94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~  170 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLGDMQT--AREGAGLVVASGVIYCLGGYDG  170 (301)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBCSSCB-CCEEEEEETTTTEEEEEEECSS--CCBSCEEEEETTEEEEECCBCS
T ss_pred             EECCCCCCCccceeEEEECCEEEEEcccCCCcc-cceEEEEcCCCCeEEECCCCCC--CcccceEEEECCEEEEECCCCC
Confidence            999999999999999999999999999986544 6789999999999999999987  7889999999999999999876


Q ss_pred             CCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCC
Q 016328          183 PQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI  262 (391)
Q Consensus       183 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~  262 (391)
                      ..   ..+++++||+++++|+.++++|.+|..|++++++++|||+||........+       ++.||+++++|+.++++
T Consensus       171 ~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~-------v~~yd~~~~~W~~~~~~  240 (301)
T 2vpj_A          171 LN---ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSS-------VEAYNIRTDSWTTVTSM  240 (301)
T ss_dssp             SC---BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCC-------EEEEETTTTEEEEECCC
T ss_pred             Cc---ccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccce-------EEEEeCCCCcEEECCCC
Confidence            54   378999999999999999999999999999999999999999875443333       34446899999999999


Q ss_pred             CCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCcee
Q 016328          263 PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (391)
Q Consensus       263 p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~  334 (391)
                      |.++..+++++++++||++||.+...                 ..++++.|| ++++|+.++++|.+|..+++
T Consensus       241 p~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~  296 (301)
T 2vpj_A          241 TTPRCYVGATVLRGRLYAIAGYDGNS-----------------LLSSIECYDPIIDSWEVVTSMGTQRCDAGV  296 (301)
T ss_dssp             SSCCBSCEEEEETTEEEEECCBCSSS-----------------BEEEEEEEETTTTEEEEEEEEEEEEESCEE
T ss_pred             CCcccceeEEEECCEEEEEcCcCCCc-----------------ccccEEEEcCCCCeEEEcCCCCcccccceE
Confidence            99999999999999999999986442                 356799999 89999999999988776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=5.4e-39  Score=303.60  Aligned_cols=264  Identities=17%  Similarity=0.192  Sum_probs=203.9

Q ss_pred             EccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECC--CCCeeeCCCCC-CCCCcceEEEEEeCCEEEEEeCc
Q 016328          104 KMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT--DNTWGGRFDMP-REMAHSHLGMVTDGRYIYVVTGQ  180 (391)
Q Consensus       104 ~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p-~~~~r~~~~~~~~~~~iyv~GG~  180 (391)
                      .+++||.+|.+|++++++++|||+||.+.     +++++||+.  +++|+.+++|| .  +|..|++++++++|||+||.
T Consensus         2 ~l~~lP~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~~~p~~--~R~~~~~~~~~~~lyv~GG~   74 (357)
T 2uvk_A            2 VLPETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALAAFPGG--PRDQATSAFIDGNLYVFGGI   74 (357)
T ss_dssp             CSCCCSSCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECCCCTTC--CCBSCEEEEETTEEEEECCE
T ss_pred             CCCCCCccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECCCCCCC--cCccceEEEECCEEEEEcCC
Confidence            57899999999999999999999999863     369999998  49999999998 5  78999999999999999998


Q ss_pred             -c-CCCCCCCcceeEEEeCCCCceEECCCCC-CCCCCceEEEECCEEEEEccCCCCccC----------CC---------
Q 016328          181 -Y-GPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYT----------PE---------  238 (391)
Q Consensus       181 -~-~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~----------~~---------  238 (391)
                       + .......++++++||+.+++|+.+++|+ .+|..|++++++++|||+||.....+.          +.         
T Consensus        75 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (357)
T 2uvk_A           75 GKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA  154 (357)
T ss_dssp             EECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhh
Confidence             3 1111234789999999999999999988 999999999999999999998643200          00         


Q ss_pred             --------ccceEeeeecCCcccCCceeecCCCCCCcc-eeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCc
Q 016328          239 --------VDHWSLAVKDGKPLEKEWRTEIPIPRGGPH-RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  309 (391)
Q Consensus       239 --------~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (391)
                              ...+...++.||+.+++|+.++++|..+.. +++++++++|||+||.....                ...++
T Consensus       155 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~----------------~~~~~  218 (357)
T 2uvk_A          155 HYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPG----------------LRTDA  218 (357)
T ss_dssp             HHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETT----------------EECCC
T ss_pred             hhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCC----------------cccCc
Confidence                    001223456667999999999999876544 89999999999999975331                13556


Q ss_pred             EEEE--c-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCc----------ccceeEecceEEEecCccc--
Q 016328          310 VYML--D-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT----------TKKMVLVGEIFQFNLNTLV--  374 (391)
Q Consensus       310 v~~~--d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~----------~~~~~~~~~v~~~d~~~~~--  374 (391)
                      ++.|  | .+++|+.+++++.|+.++.+++++++++|||+||.+..+..          ........++++||+++.+  
T Consensus       219 v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~  298 (357)
T 2uvk_A          219 VFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD  298 (357)
T ss_dssp             EEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE
T ss_pred             eEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee
Confidence            7766  4 68999999999999888888889999999999998643210          0001123478888886555  


Q ss_pred             -cccCCCcccccceeec
Q 016328          375 -SAFYPFNILCHPHVKC  390 (391)
Q Consensus       375 -~~~lp~~~~~~~~~~~  390 (391)
                       ...||.+|..|.++.+
T Consensus       299 ~~~~~p~~r~~~~~~~~  315 (357)
T 2uvk_A          299 KSGELSQGRAYGVSLPW  315 (357)
T ss_dssp             EEEECSSCCBSSEEEEE
T ss_pred             eCCCCCCCcccceeEEe
Confidence             4578999999988764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=2e-36  Score=309.03  Aligned_cols=251  Identities=13%  Similarity=0.094  Sum_probs=194.4

Q ss_pred             cccccccccCceEEcc-C-----CCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCc
Q 016328           91 TFQDLPAPELKWEKMK-A-----APVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAH  162 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~-~-----~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r  162 (391)
                      ++++||+.+++|+.++ +     +|.+|.+|+++.+  +++|||+||.+.....++++|+||+.+++|+.+++||.  +|
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~--~R  490 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH--TR  490 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB--CC
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC--Cc
Confidence            5677788888999887 5     7999999999999  99999999998766567889999999999999999988  78


Q ss_pred             ceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC---CCCCCCCceEEEEC---CEEEEEccCCCCcc
Q 016328          163 SHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWR---GRLHVMGGSGENRY  235 (391)
Q Consensus       163 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~---~~iyv~GG~~~~~~  235 (391)
                      ..|+++++ +++|||+||.+...      ++++||+.+++|+.+++   +|.+|..|++++++   ++|||+||......
T Consensus       491 ~~h~~~~~~~~~iyv~GG~~~~~------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~  564 (695)
T 2zwa_A          491 FRHSACSLPDGNVLILGGVTEGP------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT  564 (695)
T ss_dssp             BSCEEEECTTSCEEEECCBCSSC------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSS
T ss_pred             ccceEEEEcCCEEEEECCCCCCC------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCC
Confidence            89999996 99999999986533      89999999999999986   89999999988877   89999999854320


Q ss_pred             CCCccceEeeeecCCcccCC------ceeecCC-CCCCcceeEEEEC-CEEEEEeCCCCCCCcCCCCCccccCcCCceec
Q 016328          236 TPEVDHWSLAVKDGKPLEKE------WRTEIPI-PRGGPHRACVVVD-DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVY  307 (391)
Q Consensus       236 ~~~~~~~~~~~~~~d~~~~~------W~~~~~~-p~~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~  307 (391)
                           .....++.||+.+++      |+.+.++ +.+|.++++++++ ++|||+||.+....              ....
T Consensus       565 -----~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~  625 (695)
T 2zwa_A          565 -----TVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGL--------------FDRT  625 (695)
T ss_dssp             -----CBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCC--------------CCTT
T ss_pred             -----eeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCC--------------CCCC
Confidence                 111234455688998      8888765 4777788999999 99999999864421              0136


Q ss_pred             CcEEEEc-CcCcEEEcCCCCCC------CCCceeeEEEECC-EEEEEccccCCCCcccceeEecceEEEecCc
Q 016328          308 DDVYMLD-DEMKWKVLPSMPKP------DSHIEFAWVLVNN-SIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT  372 (391)
Q Consensus       308 ~~v~~~d-~~~~W~~v~~~~~~------~~~~~~~~~~~~~-~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~  372 (391)
                      ++++.|| .+++|+.+. +|.+      ..+.+|+++.+++ +|||+||...--   ...++.+++|.+|+.+
T Consensus       626 ~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cf---sfGt~~n~i~~ldl~~  694 (695)
T 2zwa_A          626 NSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCY---GFGSVTNVGLKLIAIA  694 (695)
T ss_dssp             TSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECT---TSCEEECCCEEEEECC
T ss_pred             CeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCc---CccccccceEEEEEEc
Confidence            7899999 999999763 3211      1334455566665 999999964321   0113445899998754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=4.2e-35  Score=298.52  Aligned_cols=309  Identities=12%  Similarity=0.085  Sum_probs=223.2

Q ss_pred             HHHhhee--cCEEEEecCCCCcc------cceeEeeecCCCCe-eecCC-CCCCCCc--eeeEeecC--ccccccccccc
Q 016328           26 ILGFALV--ADFFWASSSKFTSS------YLNIASNWSPYHNS-IILPN-NGPQKGE--NIGVKTKK--DVVPKRILPAT   91 (391)
Q Consensus        26 ~~~~~~~--~~~ly~~GG~~~~~------~~~~~~~~d~~~~~-~~lp~-~~~r~~~--g~~~~~~~--~~~~~~~~~~~   91 (391)
                      .|+++++  +++||++||.+...      ..+.++.|||.+++ ..++. +.+|..+  +.+.+.++  +..++... ..
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-~~  266 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-KK  266 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-TC
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC-Cc
Confidence            4556666  99999999965422      34689999999999 55555 4445443  34444433  56665433 37


Q ss_pred             ccccccccCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCC-----CCCCCCCcceE
Q 016328           92 FQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF-----DMPREMAHSHL  165 (391)
Q Consensus        92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-----~~p~~~~r~~~  165 (391)
                      +++||+.+++|+++++||.+|..|+++.+ +++|||+||.......++++|+||+.+++|+.++     +|+.  .|.. 
T Consensus       267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~--~~~~-  343 (656)
T 1k3i_A          267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT--ADKQ-  343 (656)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC--CCTT-
T ss_pred             eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc--cccc-
Confidence            99999999999999999999999999999 9999999995444445678999999999999974     3443  3433 


Q ss_pred             EEEEeCCEEEEEeCccCCCC-CCCcceeEEEeCCCCceEECC-CCCC------CCCCceEEE---ECCEEEEEccCCCCc
Q 016328          166 GMVTDGRYIYVVTGQYGPQC-RGPTAHTFVLDTETKKWQDLP-PLPV------PRYAPATQL---WRGRLHVMGGSGENR  234 (391)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~-~~~~~~~~~yd~~~~~W~~~~-~~~~------~r~~~~~~~---~~~~iyv~GG~~~~~  234 (391)
                      +++..++++|++||.++... ....+++++||+++++|.... ..+.      ++..++++.   .+++|||+||.....
T Consensus       344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~  423 (656)
T 1k3i_A          344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ  423 (656)
T ss_dssp             GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred             ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence            55568999999999876421 123689999999999987543 2211      233445543   589999999975311


Q ss_pred             cCCCccceEeeeecCCcccCCceeec--CCCCCCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEE
Q 016328          235 YTPEVDHWSLAVKDGKPLEKEWRTEI--PIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY  311 (391)
Q Consensus       235 ~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (391)
                      ....... ...++.||+.+++|+.+.  +||.+|..++++++ +++|||+||.+....           ........+++
T Consensus       424 ~~~~~~~-~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~-----------~~~~~~~~~v~  491 (656)
T 1k3i_A          424 DSDATTN-AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-----------FEDSTPVFTPE  491 (656)
T ss_dssp             SSBCCCC-EEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT-----------TCCCSBCCCCE
T ss_pred             CCCcCCc-ceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC-----------cCCCCcccceE
Confidence            1111110 113556789999999886  89999988888888 999999999753210           00112456799


Q ss_pred             EEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEcccc
Q 016328          312 MLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTT  350 (391)
Q Consensus       312 ~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~  350 (391)
                      .|| .+++|+.+++++.+|..++.++.+.+++||++||..
T Consensus       492 ~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~  531 (656)
T 1k3i_A          492 IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL  531 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred             EEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence            999 899999999999999887654344499999999964

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=8.7e-35  Score=296.98  Aligned_cols=245  Identities=14%  Similarity=0.172  Sum_probs=193.8

Q ss_pred             ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCC-CCC---CCCCcceEEEEEe--CCEE
Q 016328          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF-DMP---REMAHSHLGMVTD--GRYI  174 (391)
Q Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p---~~~~r~~~~~~~~--~~~i  174 (391)
                      +|...+..|.+|.+++ ++++++|||+||.+.  ..++++++||+.+++|+.++ ++|   .|.+|..|+++++  +++|
T Consensus       378 ~~~~~~~~p~rr~g~~-~~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l  454 (695)
T 2zwa_A          378 QLLECECPINRKFGDV-DVAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL  454 (695)
T ss_dssp             EEEECCCTTCCBSCEE-EECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred             eEeccCCCCCCceeEE-EEECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence            4555555666666554 448999999999976  45678999999999999987 632   2348999999999  9999


Q ss_pred             EEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCccc
Q 016328          175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE  253 (391)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~  253 (391)
                      ||+||.+....  .++++++||+.+++|+.+++||.+|..|+++++ +++|||+||.....          .++.||+.+
T Consensus       455 yv~GG~~~~~~--~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----------~v~~yd~~t  522 (695)
T 2zwa_A          455 LLIGGRKAPHQ--GLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----------AMLLYNVTE  522 (695)
T ss_dssp             EEECCBSSTTC--BCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----------SEEEEETTT
T ss_pred             EEEcCCCCCCC--ccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----------CEEEEECCC
Confidence            99999876542  378999999999999999999999999999996 99999999986543          344556999


Q ss_pred             CCceeecC---CCCCCcceeEEEEC---CEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCc------EE
Q 016328          254 KEWRTEIP---IPRGGPHRACVVVD---DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK------WK  320 (391)
Q Consensus       254 ~~W~~~~~---~p~~~~~~~~~~~~---~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~------W~  320 (391)
                      ++|+.+++   +|.+|.+|++++++   ++|||+||.....               ....++++.|| .+++      |+
T Consensus       523 ~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~---------------~~~~~~v~~yd~~~~~w~~~~~W~  587 (695)
T 2zwa_A          523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ---------------TTVSDKAIIFKYDAENATEPITVI  587 (695)
T ss_dssp             TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS---------------SCBCCEEEEEEECTTCSSCCEEEE
T ss_pred             CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC---------------CeeeCcEEEEEccCCccccceEEE
Confidence            99999876   78888888888877   8999999985432               01467899999 8888      99


Q ss_pred             EcCCC-CCCCCCceeeEEEEC-CEEEEEccccCCCCcccceeEecceEEEecCccccccCCCc
Q 016328          321 VLPSM-PKPDSHIEFAWVLVN-NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFN  381 (391)
Q Consensus       321 ~v~~~-~~~~~~~~~~~~~~~-~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~lp~~  381 (391)
                      .++++ +.+|..  +++++++ ++|||+||.+.....    ...++++.||+++++|..++.+
T Consensus       588 ~~~~~p~~~R~~--~~~~~~~~~~iyv~GG~~~~~~~----~~~~~v~~yd~~t~~W~~~~~p  644 (695)
T 2zwa_A          588 KKLQHPLFQRYG--SQIKYITPRKLLIVGGTSPSGLF----DRTNSIISLDPLSETLTSIPIS  644 (695)
T ss_dssp             EEEECGGGCCBS--CEEEEEETTEEEEECCBCSSCCC----CTTTSEEEEETTTTEEEECCCC
T ss_pred             EcCCCCCCCccc--ceEEEeCCCEEEEECCccCCCCC----CCCCeEEEEECCCCeEEEeecc
Confidence            99875 355554  5667888 999999998755421    1125899999998888765543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.98  E-value=1.2e-32  Score=280.48  Aligned_cols=310  Identities=11%  Similarity=0.011  Sum_probs=212.6

Q ss_pred             EeeecCCCCe-eecCCCCCCCCceeeEee-c-C-ccccccc---------ccccccccccccCceEEccCCCCCccCce-
Q 016328           51 ASNWSPYHNS-IILPNNGPQKGENIGVKT-K-K-DVVPKRI---------LPATFQDLPAPELKWEKMKAAPVPRLDGA-  116 (391)
Q Consensus        51 ~~~~d~~~~~-~~lp~~~~r~~~g~~~~~-~-~-~~~~~~~---------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-  116 (391)
                      ++.|||.+++ ..+++ .|+..++.+++. . . +..++..         ....++.||+.+++|+.++.+|.+|..++ 
T Consensus       168 ~~~~dp~~~~W~~~~~-~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~  246 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTID-LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP  246 (656)
T ss_dssp             CCCCCTTSCEEEEEEE-CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC
T ss_pred             cccCCCCCCeeeeecc-CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccc
Confidence            6778999998 54444 244445555542 2 2 4443321         12368899999999999999998887664 


Q ss_pred             -EE-EECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCc-cCCCCCCCccee
Q 016328          117 -AI-QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQ-YGPQCRGPTAHT  192 (391)
Q Consensus       117 -~~-~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~~~~~~  192 (391)
                       ++ ..+++|||+||.+..     ++++||+.+++|+.+++||.  +|..|+++++ +++|||+||. ++..   ..+++
T Consensus       247 ~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~--~R~~~s~~~~~dg~iyv~GG~~~~~~---~~~~~  316 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQV--ARGYQSSATMSDGRVFTIGGSWSGGV---FEKNG  316 (656)
T ss_dssp             EEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSS--CCSSCEEEECTTSCEEEECCCCCSSS---CCCCE
T ss_pred             cccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCc--cccccceEEecCCeEEEEeCcccCCc---ccccc
Confidence             33 358999999998643     59999999999999999988  7888999998 9999999995 4433   27899


Q ss_pred             EEEeCCCCceEEC-----CCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCC---
Q 016328          193 FVLDTETKKWQDL-----PPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR---  264 (391)
Q Consensus       193 ~~yd~~~~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~---  264 (391)
                      ++||+++++|+.+     .+|+..|.. +++..++++|++||.++..+...   ....++.||+++++|......+.   
T Consensus       317 e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~---~~~~v~~yd~~~~~w~~~~~~~~~~~  392 (656)
T 1k3i_A          317 EVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAG---PSTAMNWYYTSGSGDVKSAGKRQSNR  392 (656)
T ss_dssp             EEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECC---SSSEEEEEECSTTCEEEEEEECEETT
T ss_pred             eEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEec---CccceeeeecCCcceeecCCcccccc
Confidence            9999999999997     456666553 55668999999999865322100   01134455688999875432221   


Q ss_pred             ----CCcceeEEE---ECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC--CCCCCCCCcee
Q 016328          265 ----GGPHRACVV---VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP--SMPKPDSHIEF  334 (391)
Q Consensus       265 ----~~~~~~~~~---~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~--~~~~~~~~~~~  334 (391)
                          .+..+++++   .+++||++||.......       ....    ...+++.|| .+++|+.+.  +||.+|..+  
T Consensus       393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~-------~~~~----~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~--  459 (656)
T 1k3i_A          393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS-------DATT----NAHIITLGEPGTSPNTVFASNGLYFARTFH--  459 (656)
T ss_dssp             EECCCCBTCEEEEEETTTTEEEEECCBSSSSSS-------BCCC----CEEEEECCSTTSCCEEEECTTCCSSCCBSC--
T ss_pred             ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC-------CcCC----cceEEEcCCCCCCCeeEEccCCCCCCcccC--
Confidence                122334443   58999999997532110       0000    012588899 899999987  888887654  


Q ss_pred             eEEEE-CCEEEEEccccCCCCcccceeEecceEEEecCcccc---ccCCCcccccceee
Q 016328          335 AWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVS---AFYPFNILCHPHVK  389 (391)
Q Consensus       335 ~~~~~-~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~lp~~~~~~~~~~  389 (391)
                      +++++ +++|||+||.+...... ......++++||+++++|   ..+|.+|..|+++.
T Consensus       460 ~~~~l~~g~i~v~GG~~~~~~~~-~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~  517 (656)
T 1k3i_A          460 TSVVLPDGSTFITGGQRRGIPFE-DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL  517 (656)
T ss_dssp             EEEECTTSCEEEECCBSBCCTTC-CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEE
T ss_pred             CeEECCCCCEEEECCcccCcCcC-CCCcccceEEEcCCCCceeecCCCCCccccccHhh
Confidence            44555 99999999986321100 001235889999866664   56788999998654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.94  E-value=0.012  Score=54.45  Aligned_cols=263  Identities=14%  Similarity=0.148  Sum_probs=135.4

Q ss_pred             HhheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCC-------CCCc-eeeEeecCccccccccccccccccc
Q 016328           28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGP-------QKGE-NIGVKTKKDVVPKRILPATFQDLPA   97 (391)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~-------r~~~-g~~~~~~~~~~~~~~~~~~~~~~d~   97 (391)
                      .-++.++.||+... +     ..+.+||+++++  ........       .... +......+....+. ....+.++|.
T Consensus        48 ~p~v~~~~v~~~~~-~-----g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~g~l~a~d~  120 (376)
T 3q7m_A           48 HPALADNVVYAADR-A-----GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS-EKAQVYALNT  120 (376)
T ss_dssp             CCEEETTEEEEECT-T-----SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE-TTSEEEEEET
T ss_pred             ccEEECCEEEEEcC-C-----CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc-CCCEEEEEEC
Confidence            34667899998763 1     278899999887  33322111       1111 22222222111111 1236888888


Q ss_pred             ccC--ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEEeCCE
Q 016328           98 PEL--KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRY  173 (391)
Q Consensus        98 ~~~--~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~~~~~  173 (391)
                      .+.  .|+.-..-.   ...+.+..++.||+...       ...+..||+.+.+  |+.-...+....+...+.+..++.
T Consensus       121 ~tG~~~W~~~~~~~---~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~  190 (376)
T 3q7m_A          121 SDGTVAWQTKVAGE---ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGA  190 (376)
T ss_dssp             TTCCEEEEEECSSC---CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTE
T ss_pred             CCCCEEEEEeCCCc---eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCE
Confidence            765  586532211   12233456888888543       2359999998775  887433221101222344556888


Q ss_pred             EEEEeCccCCCCCCCcceeEEEeCCCCc--eEECCCCCCCC--------CCceEEEECCEEEEEccCCCCccCCCccceE
Q 016328          174 IYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPR--------YAPATQLWRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      ||+- ..        ...+..||+++.+  |+.-...+...        .....++.++.+|+.+. .     .....+ 
T Consensus       191 v~~g-~~--------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~-----g~l~~~-  254 (376)
T 3q7m_A          191 AVVG-GD--------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-N-----GNLTAL-  254 (376)
T ss_dssp             EEEC-CT--------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-T-----SCEEEE-
T ss_pred             EEEE-cC--------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-C-----cEEEEE-
Confidence            7763 21        2468889987654  77643322111        22333466888888642 1     112222 


Q ss_pred             eeeecCCcc--cCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-Cc--Cc
Q 016328          244 LAVKDGKPL--EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE--MK  318 (391)
Q Consensus       244 ~~~~~~d~~--~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~--~~  318 (391)
                            |++  +..|+...+  .   ....+..++.||+....                       ..++.+| .+  ..
T Consensus       255 ------d~~tG~~~w~~~~~--~---~~~~~~~~~~l~~~~~~-----------------------g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          255 ------DLRSGQIMWKRELG--S---VNDFIVDGNRIYLVDQN-----------------------DRVMALTIDGGVTL  300 (376)
T ss_dssp             ------ETTTCCEEEEECCC--C---EEEEEEETTEEEEEETT-----------------------CCEEEEETTTCCEE
T ss_pred             ------ECCCCcEEeeccCC--C---CCCceEECCEEEEEcCC-----------------------CeEEEEECCCCcEE
Confidence                  233  334664321  1   22456678888887532                       1388888 54  35


Q ss_pred             EEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          319 WKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       319 W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      |+.-. +... ..  .+.++.++.||+....             ..++.+|+++.+
T Consensus       301 w~~~~-~~~~-~~--~~~~~~~~~l~v~~~~-------------g~l~~~d~~tG~  339 (376)
T 3q7m_A          301 WTQSD-LLHR-LL--TSPVLYNGNLVVGDSE-------------GYLHWINVEDGR  339 (376)
T ss_dssp             EEECT-TTTS-CC--CCCEEETTEEEEECTT-------------SEEEEEETTTCC
T ss_pred             Eeecc-cCCC-cc--cCCEEECCEEEEEeCC-------------CeEEEEECCCCc
Confidence            87631 2211 11  2235678888875421             157777776544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.65  E-value=0.0047  Score=56.37  Aligned_cols=184  Identities=9%  Similarity=0.012  Sum_probs=99.0

Q ss_pred             HhheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC--cccccccccccccccccccCceE
Q 016328           28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK--DVVPKRILPATFQDLPAPELKWE  103 (391)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~--~~~~~~~~~~~~~~~d~~~~~W~  103 (391)
                      +.++-++++|+....     -+.+..+|+.+.+  ..++.  .....+++....+  +...  .....+..+|+.+.+-.
T Consensus        48 ~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g~lyv~~--~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           48 SMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDEKAYVTQ--IWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             EEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETTEEEEEE--BSCSEEEEEETTTTEEE
T ss_pred             EEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCCeEEEEE--CCCCeEEEEECCCCeEE
Confidence            345668899998752     2478899999887  44543  1122334432222  2222  12457888998877543


Q ss_pred             EccCCCCC----ccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeC
Q 016328          104 KMKAAPVP----RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTG  179 (391)
Q Consensus       104 ~~~~~p~~----r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG  179 (391)
                      ..-+....    ..-..++..++++||..- .    ..+.+.++|+.+++....-+.... +  ......-++++|+...
T Consensus       119 ~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-~----~~~~v~viD~~t~~~~~~i~~g~~-p--~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          119 GYIECPDMDMESGSTEQMVQYGKYVYVNCW-S----YQNRILKIDTETDKVVDELTIGIQ-P--TSLVMDKYNKMWTITD  190 (328)
T ss_dssp             EEEECTTCCTTTCBCCCEEEETTEEEEEEC-T----TCCEEEEEETTTTEEEEEEECSSC-B--CCCEECTTSEEEEEBC
T ss_pred             EEEEcCCccccCCCcceEEEECCEEEEEcC-C----CCCEEEEEECCCCeEEEEEEcCCC-c--cceEEcCCCCEEEEEC
Confidence            21111110    022344447889999852 0    134699999999876542222110 1  1122234688888753


Q ss_pred             ccCCCC--CCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE--CCEEEEEc
Q 016328          180 QYGPQC--RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMG  228 (391)
Q Consensus       180 ~~~~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G  228 (391)
                      ......  ......++++|+++.+....-.++....-..++..  ++.||+..
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence            221110  00136899999998876533233333223344444  56788874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.62  E-value=0.027  Score=51.28  Aligned_cols=266  Identities=14%  Similarity=0.124  Sum_probs=133.1

Q ss_pred             ceeEeeecCCCCe-e-ecCC--C---CCCCCceeeEeecC-cccccccccccccccccccCce-EEccCCCCCccCceEE
Q 016328           48 LNIASNWSPYHNS-I-ILPN--N---GPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKW-EKMKAAPVPRLDGAAI  118 (391)
Q Consensus        48 ~~~~~~~d~~~~~-~-~lp~--~---~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~  118 (391)
                      -+.+..+|+++++ . .+..  +   ......++....+. +....  .+..+..+|+.+.+- ..++....|   ..++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~~~~p---~~i~   90 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN--NSHVIFAIDINTFKEVGRITGFTSP---RYIH   90 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG--GGTEEEEEETTTCCEEEEEECCSSE---EEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc--CCCEEEEEECcccEEEEEcCCCCCC---cEEE
Confidence            4578999999988 2 2211  1   01111233332222 22222  244688889887764 233333222   2333


Q ss_pred             E-ECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCC--CCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEE
Q 016328          119 Q-IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE--MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL  195 (391)
Q Consensus       119 ~-~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y  195 (391)
                      . -++++||....      ...+.++|+.+.+-...-++...  .......++..++++||..-.       ..+.+.++
T Consensus        91 ~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-------~~~~v~vi  157 (328)
T 3dsm_A           91 FLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-------YQNRILKI  157 (328)
T ss_dssp             EEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-------TCCEEEEE
T ss_pred             EeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-------CCCEEEEE
Confidence            3 57899998743      25699999998865431111110  000122344489999998420       13678999


Q ss_pred             eCCCCceEECCCC-CCCCCCceEEEECCEEEEEccCCCC--ccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEE
Q 016328          196 DTETKKWQDLPPL-PVPRYAPATQLWRGRLHVMGGSGEN--RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV  272 (391)
Q Consensus       196 d~~~~~W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~  272 (391)
                      |+++.+....-+. ..|.  ..+..-++++|+..-....  .+...    ...++.+|+++.+....-.++.+......+
T Consensus       158 D~~t~~~~~~i~~g~~p~--~i~~~~dG~l~v~~~~~~~~~~~~~~----~~~v~~id~~t~~v~~~~~~~~g~~p~~la  231 (328)
T 3dsm_A          158 DTETDKVVDELTIGIQPT--SLVMDKYNKMWTITDGGYEGSPYGYE----APSLYRIDAETFTVEKQFKFKLGDWPSEVQ  231 (328)
T ss_dssp             ETTTTEEEEEEECSSCBC--CCEECTTSEEEEEBCCBCTTCSSCBC----CCEEEEEETTTTEEEEEEECCTTCCCEEEE
T ss_pred             ECCCCeEEEEEEcCCCcc--ceEEcCCCCEEEEECCCccCCccccC----CceEEEEECCCCeEEEEEecCCCCCceeEE
Confidence            9998875432111 1221  2222346888887632210  00000    012333457666655433344332222444


Q ss_pred             EE--CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEE--ECCEEEEEc
Q 016328          273 VV--DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVL--VNNSIVIVG  347 (391)
Q Consensus       273 ~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~--~~~~l~i~G  347 (391)
                      ..  ++.||+..+                         .++.+| .+.+.....-++.. .....++++  .++.||+..
T Consensus       232 ~~~d~~~lyv~~~-------------------------~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          232 LNGTRDTLYWINN-------------------------DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             ECTTSCEEEEESS-------------------------SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEE
T ss_pred             EecCCCEEEEEcc-------------------------EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEc
Confidence            44  567888654                         278888 66554221111211 111233344  367899986


Q ss_pred             cccCCCCcccceeEecceEEEecC
Q 016328          348 GTTEKHPTTKKMVLVGEIFQFNLN  371 (391)
Q Consensus       348 G~~~~~~~~~~~~~~~~v~~~d~~  371 (391)
                      ..+...        ...|++||++
T Consensus       286 ~~~y~~--------~~~V~v~d~~  301 (328)
T 3dsm_A          286 AIDYQQ--------QGIVYRYSPQ  301 (328)
T ss_dssp             CTTSSS--------EEEEEEECTT
T ss_pred             cccccc--------CCEEEEECCC
Confidence            322111        1378899886

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.61  E-value=0.0093  Score=51.80  Aligned_cols=111  Identities=18%  Similarity=0.119  Sum_probs=77.9

Q ss_pred             EEccCCCCCccC--ceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCc
Q 016328          103 EKMKAAPVPRLD--GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ  180 (391)
Q Consensus       103 ~~~~~~p~~r~~--~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~  180 (391)
                      +.+...|.....  +.+...++.+|+..|..+.    +++.++|+++.+=...-+++.  .-...+++..+++||+....
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~   83 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQLTWR   83 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESS
T ss_pred             EEEEEcCCCCccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEEEee
Confidence            334444544444  4667778999999997643    458899999998776555654  44567788899999998543


Q ss_pred             cCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEcc
Q 016328          181 YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG  229 (391)
Q Consensus       181 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG  229 (391)
                              .+.++.||+++.+  .+...+.+..+.+++.-+++||+.-|
T Consensus        84 --------~~~v~v~D~~tl~--~~~ti~~~~~Gwglt~dg~~L~vSdg  122 (243)
T 3mbr_X           84 --------NHEGFVYDLATLT--PRARFRYPGEGWALTSDDSHLYMSDG  122 (243)
T ss_dssp             --------SSEEEEEETTTTE--EEEEEECSSCCCEEEECSSCEEEECS
T ss_pred             --------CCEEEEEECCcCc--EEEEEeCCCCceEEeeCCCEEEEECC
Confidence                    4788999998755  33344444466777777788998865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.49  E-value=0.062  Score=49.56  Aligned_cols=247  Identities=11%  Similarity=0.070  Sum_probs=125.1

Q ss_pred             hheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccC--ceEE
Q 016328           29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL--KWEK  104 (391)
Q Consensus        29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~~  104 (391)
                      .++.++.+|+... +     ..+..+|+++++  ...+....  ..+......+....+ .....++.+|+.+.  .|+.
T Consensus        99 ~~~~~~~v~v~~~-~-----g~l~a~d~~tG~~~W~~~~~~~--~~~~p~~~~~~v~v~-~~~g~l~~~d~~tG~~~W~~  169 (376)
T 3q7m_A           99 VTVSGGHVYIGSE-K-----AQVYALNTSDGTVAWQTKVAGE--ALSRPVVSDGLVLIH-TSNGQLQALNEADGAVKWTV  169 (376)
T ss_dssp             EEEETTEEEEEET-T-----SEEEEEETTTCCEEEEEECSSC--CCSCCEEETTEEEEE-CTTSEEEEEETTTCCEEEEE
T ss_pred             ceEeCCEEEEEcC-C-----CEEEEEECCCCCEEEEEeCCCc--eEcCCEEECCEEEEE-cCCCeEEEEECCCCcEEEEE
Confidence            3456788888643 2     368899999887  33322111  011111112211111 11236788888665  4876


Q ss_pred             ccCCCC--CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCC---C---cceEEEEEeCCEE
Q 016328          105 MKAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREM---A---HSHLGMVTDGRYI  174 (391)
Q Consensus       105 ~~~~p~--~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~---~---r~~~~~~~~~~~i  174 (391)
                      -...+.  .+...+.+..++.||+.. .      ...+..||+.+.+  |+.-...+...   .   ......++.++.|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~v~~g~-~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v  242 (376)
T 3q7m_A          170 NLDMPSLSLRGESAPTTAFGAAVVGG-D------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVV  242 (376)
T ss_dssp             ECCC-----CCCCCCEEETTEEEECC-T------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEE
T ss_pred             eCCCCceeecCCCCcEEECCEEEEEc-C------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEE
Confidence            433221  122234455678877732 2      1358899988764  77643322100   0   0123344568888


Q ss_pred             EEEeCccCCCCCCCcceeEEEeCCCC--ceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc
Q 016328          175 YVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL  252 (391)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~  252 (391)
                      |+.+.         ...+.++|+++.  .|+.-..  .   ....++.++.||+.....      .+..+       |+.
T Consensus       243 ~~~~~---------~g~l~~~d~~tG~~~w~~~~~--~---~~~~~~~~~~l~~~~~~g------~l~~~-------d~~  295 (376)
T 3q7m_A          243 FALAY---------NGNLTALDLRSGQIMWKRELG--S---VNDFIVDGNRIYLVDQND------RVMAL-------TID  295 (376)
T ss_dssp             EEECT---------TSCEEEEETTTCCEEEEECCC--C---EEEEEEETTEEEEEETTC------CEEEE-------ETT
T ss_pred             EEEec---------CcEEEEEECCCCcEEeeccCC--C---CCCceEECCEEEEEcCCC------eEEEE-------ECC
Confidence            88642         245788999766  4775421  1   234556788999875311      12222       233


Q ss_pred             c--CCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcC--cEEEcCCCCC
Q 016328          253 E--KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEM--KWKVLPSMPK  327 (391)
Q Consensus       253 ~--~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~--~W~~v~~~~~  327 (391)
                      +  ..|+... ++.. ...+.+..++.||+... +                      ..++.+| .+.  .|+.-  +..
T Consensus       296 tG~~~w~~~~-~~~~-~~~~~~~~~~~l~v~~~-~----------------------g~l~~~d~~tG~~~~~~~--~~~  348 (376)
T 3q7m_A          296 GGVTLWTQSD-LLHR-LLTSPVLYNGNLVVGDS-E----------------------GYLHWINVEDGRFVAQQK--VDS  348 (376)
T ss_dssp             TCCEEEEECT-TTTS-CCCCCEEETTEEEEECT-T----------------------SEEEEEETTTCCEEEEEE--CCT
T ss_pred             CCcEEEeecc-cCCC-cccCCEEECCEEEEEeC-C----------------------CeEEEEECCCCcEEEEEe--cCC
Confidence            3  3476431 1111 12244567888887532 1                      1388888 544  46542  211


Q ss_pred             CCCCceeeEEEECCEEEEEc
Q 016328          328 PDSHIEFAWVLVNNSIVIVG  347 (391)
Q Consensus       328 ~~~~~~~~~~~~~~~l~i~G  347 (391)
                      ...  ....+..++.||+..
T Consensus       349 ~~~--~~~~~~~~~~l~v~~  366 (376)
T 3q7m_A          349 SGF--QTEPVAADGKLLIQA  366 (376)
T ss_dssp             TCB--CSCCEEETTEEEEEB
T ss_pred             Ccc--eeCCEEECCEEEEEe
Confidence            111  123356788988854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.41  E-value=0.0013  Score=61.24  Aligned_cols=168  Identities=15%  Similarity=0.110  Sum_probs=84.5

Q ss_pred             CEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccCCCC
Q 016328           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      +++|+.|+.++     .+..||..+++  ..++...  ...++.....+ ...........+..+|..+.+....-..+.
T Consensus         2 ~~l~vs~~~d~-----~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            2 TFAYIANSESD-----NISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEEETTTT-----EEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             CEEEEEcCCCC-----EEEEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            46788887665     68899998887  3333211  11222222122 111111123467778877665433222221


Q ss_pred             CccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCCC
Q 016328          111 PRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCR  186 (391)
Q Consensus       111 ~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~  186 (391)
                        .-.+++..  +..||+.+..+      ..+.+||+.+++-...-....    ....++..  +..||+.++.      
T Consensus        75 --~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~------  136 (391)
T 1l0q_A           75 --SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNG------  136 (391)
T ss_dssp             --SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETT------
T ss_pred             --CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCC------
Confidence              12222222  34677765432      458999999876544322221    22344443  3467777653      


Q ss_pred             CCcceeEEEeCCCCceEECCCCCCCCCCceEEEE--CCEEEEEccC
Q 016328          187 GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGS  230 (391)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~  230 (391)
                        ...+..||+.+.+....-...  .....++..  ++.||+.++.
T Consensus       137 --~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          137 --DKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             --TTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETT
T ss_pred             --CCEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEEEeCC
Confidence              357889999887654332211  111223322  3457777654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.21  E-value=0.021  Score=49.55  Aligned_cols=164  Identities=17%  Similarity=0.186  Sum_probs=98.6

Q ss_pred             CCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCc
Q 016328          155 DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR  234 (391)
Q Consensus       155 ~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~  234 (391)
                      ..|.+..-+..++...++.||+..|..+      .+.+.++|+++.+=..--+++..-.+.+++..+++||+....++  
T Consensus        14 ~~phd~~~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~--   85 (243)
T 3mbr_X           14 RYPHDTTAFTEGLFYLRGHLYESTGETG------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNH--   85 (243)
T ss_dssp             EEECCTTCCEEEEEEETTEEEEEECCTT------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSS--
T ss_pred             EcCCCCccccccEEEECCEEEEECCCCC------CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCC--
Confidence            3444323455678888999999988765      46789999999876655566666666778889999999965432  


Q ss_pred             cCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc
Q 016328          235 YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD  314 (391)
Q Consensus       235 ~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  314 (391)
                         ...+|+       +++.  +.+...+.+..+.+++.-+++||+.-|.                       +.++.+|
T Consensus        86 ---~v~v~D-------~~tl--~~~~ti~~~~~Gwglt~dg~~L~vSdgs-----------------------~~l~~iD  130 (243)
T 3mbr_X           86 ---EGFVYD-------LATL--TPRARFRYPGEGWALTSDDSHLYMSDGT-----------------------AVIRKLD  130 (243)
T ss_dssp             ---EEEEEE-------TTTT--EEEEEEECSSCCCEEEECSSCEEEECSS-----------------------SEEEEEC
T ss_pred             ---EEEEEE-------CCcC--cEEEEEeCCCCceEEeeCCCEEEEECCC-----------------------CeEEEEe
Confidence               233333       3333  3333322223344666667788887662                       2488888


Q ss_pred             -CcCcE-EEcC--CCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          315 -DEMKW-KVLP--SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       315 -~~~~W-~~v~--~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                       .+.+- ..+.  ..+.+..... -+...+++||+-- +. .          ++|.+.|+++..
T Consensus       131 p~t~~~~~~I~V~~~g~~~~~lN-eLe~~~G~lyanv-w~-s----------~~I~vIDp~tG~  181 (243)
T 3mbr_X          131 PDTLQQVGSIKVTAGGRPLDNLN-ELEWVNGELLANV-WL-T----------SRIARIDPASGK  181 (243)
T ss_dssp             TTTCCEEEEEECEETTEECCCEE-EEEEETTEEEEEE-TT-T----------TEEEEECTTTCB
T ss_pred             CCCCeEEEEEEEccCCcccccce-eeEEeCCEEEEEE-CC-C----------CeEEEEECCCCC
Confidence             65432 2221  1122222211 2344588888432 21 1          379999998877

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.20  E-value=0.06  Score=50.88  Aligned_cols=262  Identities=13%  Similarity=0.074  Sum_probs=122.3

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      ++...+.|+.++     .+..||..+.+  ..+...  ....-.....+.....+. ....+..+|..+.+-.  ..+..
T Consensus       128 ~g~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~--~~~~~  197 (445)
T 2ovr_B          128 CGNRIVSGSDDN-----TLKVWSAVTGKCLRTLVGH--TGGVWSSQMRDNIIISGS-TDRTLKVWNAETGECI--HTLYG  197 (445)
T ss_dssp             ETTEEEEEETTS-----CEEEEETTTCCEEEECCCC--SSCEEEEEEETTEEEEEE-TTSCEEEEETTTTEEE--EEECC
T ss_pred             cCCEEEEEECCC-----cEEEEECCCCcEEEEEcCC--CCCEEEEEecCCEEEEEe-CCCeEEEEECCcCcEE--EEECC
Confidence            445556666555     67788888777  333321  111111111122222221 2235666776655322  12222


Q ss_pred             CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcc
Q 016328          111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA  190 (391)
Q Consensus       111 ~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  190 (391)
                      ....-.+...++..++.|+.+      ..+.+||..+.+-...-...    .........++..++.|+.+        .
T Consensus       198 h~~~v~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~----~~~v~~~~~~~~~l~~~~~d--------g  259 (445)
T 2ovr_B          198 HTSTVRCMHLHEKRVVSGSRD------ATLRVWDIETGQCLHVLMGH----VAAVRCVQYDGRRVVSGAYD--------F  259 (445)
T ss_dssp             CSSCEEEEEEETTEEEEEETT------SEEEEEESSSCCEEEEEECC----SSCEEEEEECSSCEEEEETT--------S
T ss_pred             CCCcEEEEEecCCEEEEEeCC------CEEEEEECCCCcEEEEEcCC----cccEEEEEECCCEEEEEcCC--------C
Confidence            222222333445556666654      35888998876533211111    11122233367777777654        3


Q ss_pred             eeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCccee
Q 016328          191 HTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRA  270 (391)
Q Consensus       191 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~  270 (391)
                      .+..||+.+.+-  +..+......-.+...++..++.|+.++     .+..|++       .+.+  .+..+........
T Consensus       260 ~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~i~d~-------~~~~--~~~~~~~~~~~v~  323 (445)
T 2ovr_B          260 MVKVWDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDT-----SIRVWDV-------ETGN--CIHTLTGHQSLTS  323 (445)
T ss_dssp             CEEEEEGGGTEE--EEEECCCSSCEEEEEECSSEEEEEETTS-----CEEEEET-------TTCC--EEEEECCCCSCEE
T ss_pred             EEEEEECCCCcE--eEEecCCCCceEEEEECCCEEEEEeCCC-----eEEEEEC-------CCCC--EEEEEcCCcccEE
Confidence            467788776542  2222211122233344777777777543     3555653       2222  1111111111223


Q ss_pred             EEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCc-EEEcCCCCCCCCCceeeEEEECCEEEEEcc
Q 016328          271 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK-WKVLPSMPKPDSHIEFAWVLVNNSIVIVGG  348 (391)
Q Consensus       271 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~-W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG  348 (391)
                      +...++..++.|+.++.                      +..+| .+.+ -..+.. +.... .....+..++.+++.|+
T Consensus       324 ~~~~~~~~l~~~~~dg~----------------------i~vwd~~~~~~~~~~~~-~~~~~-~~v~~~~~~~~~l~s~~  379 (445)
T 2ovr_B          324 GMELKDNILVSGNADST----------------------VKIWDIKTGQCLQTLQG-PNKHQ-SAVTCLQFNKNFVITSS  379 (445)
T ss_dssp             EEEEETTEEEEEETTSC----------------------EEEEETTTCCEEEEECS-TTSCS-SCEEEEEECSSEEEEEE
T ss_pred             EEEEeCCEEEEEeCCCe----------------------EEEEECCCCcEEEEEcc-CCCCC-CCEEEEEECCCEEEEEe
Confidence            44455667777776532                      66666 4432 222221 11111 12334566788888887


Q ss_pred             ccCCCCcccceeEecceEEEecCccc
Q 016328          349 TTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       349 ~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      .++            .+..||..+.+
T Consensus       380 ~dg------------~v~iwd~~~~~  393 (445)
T 2ovr_B          380 DDG------------TVKLWDLKTGE  393 (445)
T ss_dssp             TTS------------EEEEEETTTCC
T ss_pred             CCC------------eEEEEECCCCc
Confidence            653            46666665554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.17  E-value=0.028  Score=49.33  Aligned_cols=113  Identities=10%  Similarity=0.033  Sum_probs=76.0

Q ss_pred             ceEEccCCCCCccC--ceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEe
Q 016328          101 KWEKMKAAPVPRLD--GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT  178 (391)
Q Consensus       101 ~W~~~~~~p~~r~~--~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~G  178 (391)
                      .++.+...|..+..  ..+...++.+|+..|..+    .+.+.++|+++.+=...-+++.  .-...+++..+++||+.-
T Consensus        30 ~~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~lt  103 (262)
T 3nol_A           30 DYQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLT  103 (262)
T ss_dssp             EEEEEEEEECCTTCEEEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEE
T ss_pred             ceEEEEEecCCCCcccceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEE
Confidence            44555555544444  445556899999999754    2458899999998665444543  334567888999999995


Q ss_pred             CccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEcc
Q 016328          179 GQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG  229 (391)
Q Consensus       179 G~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG  229 (391)
                      ..        .+.++.||+++.+-.  ...+.+-.+.+++.-++.||+.-|
T Consensus       104 w~--------~~~v~v~D~~t~~~~--~ti~~~~eG~glt~dg~~L~~SdG  144 (262)
T 3nol_A          104 WK--------NGLGFVWNIRNLRQV--RSFNYDGEGWGLTHNDQYLIMSDG  144 (262)
T ss_dssp             SS--------SSEEEEEETTTCCEE--EEEECSSCCCCEEECSSCEEECCS
T ss_pred             ee--------CCEEEEEECccCcEE--EEEECCCCceEEecCCCEEEEECC
Confidence            42        478899999886633  333333455667766777888754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.023  Score=51.88  Aligned_cols=95  Identities=8%  Similarity=0.019  Sum_probs=49.7

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE--C--CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--K--NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~  166 (391)
                      .+..+|.....+..+..+......-..+.+  +  +.+++.|+.+      ..+.+||..+++|..+..+... ...-.+
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~-~~~v~~  106 (379)
T 3jrp_A           34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVHAVH-SASVNS  106 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEETTEEEEEEEECCC-SSCEEE
T ss_pred             cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEcCCCceeEeeeecCC-CcceEE
Confidence            344555554444443333322222222222  2  5667777664      2488899999888775544331 112233


Q ss_pred             EEEe-C--CEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          167 MVTD-G--RYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       167 ~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++.. +  +.+++.|+.+        ..+..||..+.
T Consensus       107 ~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~  135 (379)
T 3jrp_A          107 VQWAPHEYGPLLLVASSD--------GKVSVVEFKEN  135 (379)
T ss_dssp             EEECCGGGCSEEEEEETT--------SEEEEEECCTT
T ss_pred             EEeCCCCCCCEEEEecCC--------CcEEEEecCCC
Confidence            3333 2  5566776643        45677888765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.85  E-value=0.24  Score=44.82  Aligned_cols=145  Identities=6%  Similarity=-0.010  Sum_probs=65.9

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe----eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS----IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKA  107 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~----~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~  107 (391)
                      ++.++++|+.++     .+..||..+++    ..+.. ....-..+.....+ ....+. ....+..+|..+.++.....
T Consensus        19 ~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~   91 (372)
T 1k8k_C           19 DRTQIAICPNNH-----EVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKPTLV   91 (372)
T ss_dssp             TSSEEEEECSSS-----EEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEeCCC-----EEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCeeeeeEE
Confidence            556667776554     67778877763    22221 11111122221111 111111 22356777877776654433


Q ss_pred             CCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCC-eeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCC
Q 016328          108 APVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGP  183 (391)
Q Consensus       108 ~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~  183 (391)
                      +.........+.+  ++..+++|+.+      ..+.+||..+.+ |.....+..+....-.+++.. ++.+++.|+.+  
T Consensus        92 ~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  163 (372)
T 1k8k_C           92 ILRINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD--  163 (372)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT--
T ss_pred             eecCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC--
Confidence            2222222222222  45666676654      236666666543 332222111111122233332 56677777653  


Q ss_pred             CCCCCcceeEEEeCC
Q 016328          184 QCRGPTAHTFVLDTE  198 (391)
Q Consensus       184 ~~~~~~~~~~~yd~~  198 (391)
                            ..+..||..
T Consensus       164 ------g~i~~~d~~  172 (372)
T 1k8k_C          164 ------FKCRIFSAY  172 (372)
T ss_dssp             ------SCEEEEECC
T ss_pred             ------CCEEEEEcc
Confidence                  346678854

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.79  E-value=0.075  Score=50.11  Aligned_cols=212  Identities=13%  Similarity=0.050  Sum_probs=99.6

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      ++..++.|+.++     .+..||..+.+  ..+...  ....-.....+.....+. ....+..+|..+.+-..  .+..
T Consensus       142 d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~l~sg~-~dg~i~vwd~~~~~~~~--~~~~  211 (435)
T 1p22_A          142 DDQKIVSGLRDN-----TIKIWDKNTLECKRILTGH--TGSVLCLQYDERVIITGS-SDSTVRVWDVNTGEMLN--TLIH  211 (435)
T ss_dssp             CSSEEEEEESSS-----CEEEEESSSCCEEEEECCC--SSCEEEEECCSSEEEEEE-TTSCEEEEESSSCCEEE--EECC
T ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCeEEEEEcCC--CCcEEEEEECCCEEEEEc-CCCeEEEEECCCCcEEE--EEcC
Confidence            566677777665     67788888776  333321  111111111111222221 22356677766654322  2222


Q ss_pred             CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeC-CCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCc
Q 016328          111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR-FDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT  189 (391)
Q Consensus       111 ~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  189 (391)
                      ....-......+..++.|+.+      ..+.+||..+.+-... ..+... ...-.++.. ++..++.|+.+        
T Consensus       212 h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~l~s~~~d--------  275 (435)
T 1p22_A          212 HCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF-DDKYIVSASGD--------  275 (435)
T ss_dssp             CCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE-ETTEEEEEETT--------
T ss_pred             CCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe-CCCEEEEEeCC--------
Confidence            222223334455567777654      3478889876542211 111110 111223333 55556666543        


Q ss_pred             ceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcce
Q 016328          190 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHR  269 (391)
Q Consensus       190 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~  269 (391)
                      ..+..||..+.+-..  .+......-.+...++.+++.|+.++     .+..|++       .+.+  .+..+.......
T Consensus       276 g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~g~~dg-----~i~iwd~-------~~~~--~~~~~~~h~~~v  339 (435)
T 1p22_A          276 RTIKVWNTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDI-------ECGA--CLRVLEGHEELV  339 (435)
T ss_dssp             SEEEEEETTTCCEEE--EEECCSSCEEEEEEETTEEEEEETTS-----CEEEEET-------TTCC--EEEEECCCSSCE
T ss_pred             CeEEEEECCcCcEEE--EEcCCCCcEEEEEeCCCEEEEEeCCC-----eEEEEEC-------CCCC--EEEEEeCCcCcE
Confidence            457789987764321  11111122233344666777777543     3555653       2221  222221111123


Q ss_pred             eEEEECCEEEEEeCCCC
Q 016328          270 ACVVVDDRLLVIGGQEG  286 (391)
Q Consensus       270 ~~~~~~~~i~v~GG~~~  286 (391)
                      .++..++..++.|+.++
T Consensus       340 ~~~~~~~~~l~sg~~dg  356 (435)
T 1p22_A          340 RCIRFDNKRIVSGAYDG  356 (435)
T ss_dssp             EEEECCSSEEEEEETTS
T ss_pred             EEEEecCCEEEEEeCCC
Confidence            44556888888888654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.69  E-value=0.2  Score=44.04  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=69.8

Q ss_pred             eEEccCCCCCccC--ceEEEEC-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEe
Q 016328          102 WEKMKAAPVPRLD--GAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT  178 (391)
Q Consensus       102 W~~~~~~p~~r~~--~~~~~~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~G  178 (391)
                      .+.+...|.....  +.+...+ +.+|+..|..+    .+.+.++|+.+++=...-+++.  .....+++..+++||+..
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~g~~lyv~t   82 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDD--SYFGEGLTLLNEKLYQVV   82 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEE
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCC--CcceEEEEEeCCEEEEEE
Confidence            4444545544332  4555555 79999887532    2469999999988655333433  234457788899999985


Q ss_pred             CccCCCCCCCcceeEEEeCCCCceEECCCCCCC-CCCceEEEECCEEEEEcc
Q 016328          179 GQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVP-RYAPATQLWRGRLHVMGG  229 (391)
Q Consensus       179 G~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG  229 (391)
                      -.        .+.++.||+.+.+  .+...+.+ ..+.+++.-++++|+.-|
T Consensus        83 ~~--------~~~v~viD~~t~~--v~~~i~~g~~~g~glt~Dg~~l~vs~g  124 (266)
T 2iwa_A           83 WL--------KNIGFIYDRRTLS--NIKNFTHQMKDGWGLATDGKILYGSDG  124 (266)
T ss_dssp             TT--------CSEEEEEETTTTE--EEEEEECCSSSCCEEEECSSSEEEECS
T ss_pred             ec--------CCEEEEEECCCCc--EEEEEECCCCCeEEEEECCCEEEEECC
Confidence            32        4778999998754  33333222 234445555677888754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.67  E-value=0.028  Score=49.24  Aligned_cols=156  Identities=14%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             ceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccce
Q 016328          163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW  242 (391)
Q Consensus       163 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  242 (391)
                      +..++...++.||+..|..+      .+.+.++|+++.+=..--+++..-.+.+++..+++||+....++     ...+|
T Consensus        44 ftqGL~~~~~~LyestG~~g------~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~-----~v~v~  112 (262)
T 3nol_A           44 FTEGFFYRNGYFYESTGLNG------RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNG-----LGFVW  112 (262)
T ss_dssp             EEEEEEEETTEEEEEEEETT------EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSS-----EEEEE
T ss_pred             ccceEEEECCEEEEECCCCC------CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCC-----EEEEE
Confidence            34566667999999988655      46789999999875544455544455667889999999965432     23333


Q ss_pred             EeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCc-EE
Q 016328          243 SLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK-WK  320 (391)
Q Consensus       243 ~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~-W~  320 (391)
                      +       +++.+-.  ...+.+..+.+.+.-+++||+.-|.                       +.++.+| .+.+ -.
T Consensus       113 D-------~~t~~~~--~ti~~~~eG~glt~dg~~L~~SdGs-----------------------~~i~~iDp~T~~v~~  160 (262)
T 3nol_A          113 N-------IRNLRQV--RSFNYDGEGWGLTHNDQYLIMSDGT-----------------------PVLRFLDPESLTPVR  160 (262)
T ss_dssp             E-------TTTCCEE--EEEECSSCCCCEEECSSCEEECCSS-----------------------SEEEEECTTTCSEEE
T ss_pred             E-------CccCcEE--EEEECCCCceEEecCCCEEEEECCC-----------------------CeEEEEcCCCCeEEE
Confidence            3       4443332  2222222333555556678887652                       2488888 5543 22


Q ss_pred             EcCC--CCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          321 VLPS--MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       321 ~v~~--~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      .++-  ...|..... -+...+++||+-- +. .          ++|.+.|+++.+
T Consensus       161 ~I~V~~~g~~~~~lN-ELe~~~G~lyan~-w~-~----------~~I~vIDp~tG~  203 (262)
T 3nol_A          161 TITVTAHGEELPELN-ELEWVDGEIFANV-WQ-T----------NKIVRIDPETGK  203 (262)
T ss_dssp             EEECEETTEECCCEE-EEEEETTEEEEEE-TT-S----------SEEEEECTTTCB
T ss_pred             EEEeccCCccccccc-eeEEECCEEEEEE-cc-C----------CeEEEEECCCCc
Confidence            2221  111212111 1234588888522 11 1          379999998877

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.61  E-value=0.13  Score=48.10  Aligned_cols=153  Identities=6%  Similarity=-0.029  Sum_probs=72.0

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-ee-cCC---CCCCCC-ceeeEeecCcccccccccccccccccccCceEEcc
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-II-LPN---NGPQKG-ENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMK  106 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~-lp~---~~~r~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~  106 (391)
                      ++.+++.++.++     .+..||+.+++ .. ++.   ..+... .++.....+...........+..+|..+.+.... 
T Consensus       133 ~~~~~~~~~~~~-----~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~-  206 (433)
T 3bws_A          133 NTRLAIPLLEDE-----GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT-  206 (433)
T ss_dssp             SSEEEEEBTTSS-----SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred             CCeEEEEeCCCC-----eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE-
Confidence            678888876544     57889998887 33 222   111111 1112111111111111223567777766543221 


Q ss_pred             CCCCCccC-ceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccC
Q 016328          107 AAPVPRLD-GAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYG  182 (391)
Q Consensus       107 ~~p~~r~~-~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~  182 (391)
                       ++..... .+++..  ++.+|+.+..+      ..+.+||+.+.+....-....    ....++.. +++.+++++...
T Consensus       207 -~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          207 -VDLTGKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTDKIG----LPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             -EECSSSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECCCCS----EEEEEEECTTSSEEEEEEEES
T ss_pred             -EcCCCCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEecCCC----CceEEEEcCCCCEEEEEECCC
Confidence             1111111 222222  44677776543      358999998876544322221    12333332 443444444322


Q ss_pred             CCCCCCcceeEEEeCCCCce
Q 016328          183 PQCRGPTAHTFVLDTETKKW  202 (391)
Q Consensus       183 ~~~~~~~~~~~~yd~~~~~W  202 (391)
                      .........+..||+.+.+-
T Consensus       276 ~~~~~~dg~i~~~d~~~~~~  295 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDKEKL  295 (433)
T ss_dssp             CTTCSCCEEEEEEETTTTEE
T ss_pred             CccccCCCeEEEEECCCCcE
Confidence            21100135788999987754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.61  E-value=0.079  Score=46.48  Aligned_cols=105  Identities=11%  Similarity=0.076  Sum_probs=71.7

Q ss_pred             cCCCCCccC--ceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCC
Q 016328          106 KAAPVPRLD--GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGP  183 (391)
Q Consensus       106 ~~~p~~r~~--~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~  183 (391)
                      ...|..+..  ..+...++.+|+..|..+      .+.++|+++.+=...- ++.  .-...+++..+++||+....   
T Consensus        47 ~~~phd~~~ftqGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~Ly~ltw~---  114 (268)
T 3nok_A           47 REYPHATNAFTQGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLG--NIFAEGLASDGERLYQLTWT---  114 (268)
T ss_dssp             EEEECCTTCCEEEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECT--TCCEEEEEECSSCEEEEESS---
T ss_pred             EEEcCCCccccceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCC--CcceeEEEEeCCEEEEEEcc---
Confidence            334444443  455666899999999753      2889999998765533 543  33456788889999998543   


Q ss_pred             CCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEcc
Q 016328          184 QCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG  229 (391)
Q Consensus       184 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG  229 (391)
                           .+.++.||+++.+-.  ...+.+..+.+++.-+++||+.-|
T Consensus       115 -----~~~v~V~D~~Tl~~~--~ti~~~~eGwGLt~Dg~~L~vSdG  153 (268)
T 3nok_A          115 -----EGLLFTWSGMPPQRE--RTTRYSGEGWGLCYWNGKLVRSDG  153 (268)
T ss_dssp             -----SCEEEEEETTTTEEE--EEEECSSCCCCEEEETTEEEEECS
T ss_pred             -----CCEEEEEECCcCcEE--EEEeCCCceeEEecCCCEEEEECC
Confidence                 477899999876533  333334446677778889999865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.59  E-value=0.22  Score=46.93  Aligned_cols=211  Identities=13%  Similarity=0.070  Sum_probs=98.1

Q ss_pred             CEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCCC
Q 016328           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVP  111 (391)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~  111 (391)
                      +.+++.|+.++     .+..||..+++  ..+...  ..........+.....+. ....+..+|..+.+-..  .+...
T Consensus       169 ~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~--~~~~~  238 (445)
T 2ovr_B          169 DNIIISGSTDR-----TLKVWNAETGECIHTLYGH--TSTVRCMHLHEKRVVSGS-RDATLRVWDIETGQCLH--VLMGH  238 (445)
T ss_dssp             TTEEEEEETTS-----CEEEEETTTTEEEEEECCC--SSCEEEEEEETTEEEEEE-TTSEEEEEESSSCCEEE--EEECC
T ss_pred             CCEEEEEeCCC-----eEEEEECCcCcEEEEECCC--CCcEEEEEecCCEEEEEe-CCCEEEEEECCCCcEEE--EEcCC
Confidence            44666676555     67888988877  333321  111111111111111111 22356666666543221  11111


Q ss_pred             ccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcce
Q 016328          112 RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAH  191 (391)
Q Consensus       112 r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  191 (391)
                      .....+...++..++.|+.+      ..+.+||+.+.+-..  .+... ...-.++. .++..++.|+.+        ..
T Consensus       239 ~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~-~~~v~~~~-~~~~~l~~~~~d--------~~  300 (445)
T 2ovr_B          239 VAAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLH--TLQGH-TNRVYSLQ-FDGIHVVSGSLD--------TS  300 (445)
T ss_dssp             SSCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEE--EECCC-SSCEEEEE-ECSSEEEEEETT--------SC
T ss_pred             cccEEEEEECCCEEEEEcCC------CEEEEEECCCCcEeE--EecCC-CCceEEEE-ECCCEEEEEeCC--------Ce
Confidence            22223344477777777764      247888887654322  12211 11122333 366667777653        34


Q ss_pred             eEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCce-eecCCCCCCccee
Q 016328          192 TFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWR-TEIPIPRGGPHRA  270 (391)
Q Consensus       192 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~~~~~~  270 (391)
                      +..||..+.+-..  .+........+...++.+++.|+.++     .+..|++       .+.+-. .+...........
T Consensus       301 i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~vwd~-------~~~~~~~~~~~~~~~~~~v~  366 (445)
T 2ovr_B          301 IRVWDVETGNCIH--TLTGHQSLTSGMELKDNILVSGNADS-----TVKIWDI-------KTGQCLQTLQGPNKHQSAVT  366 (445)
T ss_dssp             EEEEETTTCCEEE--EECCCCSCEEEEEEETTEEEEEETTS-----CEEEEET-------TTCCEEEEECSTTSCSSCEE
T ss_pred             EEEEECCCCCEEE--EEcCCcccEEEEEEeCCEEEEEeCCC-----eEEEEEC-------CCCcEEEEEccCCCCCCCEE
Confidence            6788987765321  11111112223334555667776543     3555653       222211 1111111112234


Q ss_pred             EEEECCEEEEEeCCCC
Q 016328          271 CVVVDDRLLVIGGQEG  286 (391)
Q Consensus       271 ~~~~~~~i~v~GG~~~  286 (391)
                      ++..++..++.|+.++
T Consensus       367 ~~~~~~~~l~s~~~dg  382 (445)
T 2ovr_B          367 CLQFNKNFVITSSDDG  382 (445)
T ss_dssp             EEEECSSEEEEEETTS
T ss_pred             EEEECCCEEEEEeCCC
Confidence            5566778888887653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.57  E-value=0.12  Score=48.01  Aligned_cols=93  Identities=3%  Similarity=-0.073  Sum_probs=46.7

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      .+..+|..+.+-..  .+............++.+++.|+.+      ..+.+||.....-... .+... ...-.+++..
T Consensus       157 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~-~~~~~-~~~v~~~~~~  226 (401)
T 4aez_A          157 LVDIYDVESQTKLR--TMAGHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIG-TLQGH-SSEVCGLAWR  226 (401)
T ss_dssp             CEEEEETTTCCEEE--EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEE-EEECC-SSCEEEEEEC
T ss_pred             eEEEEECcCCeEEE--EecCCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceee-EEcCC-CCCeeEEEEc
Confidence            56667766554322  1222222233344466677777654      3588899874331111 11110 1112233332


Q ss_pred             -CCEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328          171 -GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       171 -~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (391)
                       ++.+++.|+.+        ..+..||..+.+
T Consensus       227 ~~~~~l~s~~~d--------~~v~iwd~~~~~  250 (401)
T 4aez_A          227 SDGLQLASGGND--------NVVQIWDARSSI  250 (401)
T ss_dssp             TTSSEEEEEETT--------SCEEEEETTCSS
T ss_pred             CCCCEEEEEeCC--------CeEEEccCCCCC
Confidence             56677777753        357788987754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.56  E-value=0.15  Score=45.96  Aligned_cols=99  Identities=10%  Similarity=0.002  Sum_probs=50.3

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      +++.++.|+.+      ..+.+||..+.+-...-...   ...-.+++. -++++++.|+.+        ..+..||..+
T Consensus       133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~lasg~~d--------g~i~iwd~~~  195 (321)
T 3ow8_A          133 DSQYLATGTHV------GKVNIFGVESGKKEYSLDTR---GKFILSIAYSPDGKYLASGAID--------GIINIFDIAT  195 (321)
T ss_dssp             TSSEEEEECTT------SEEEEEETTTCSEEEEEECS---SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCceeEEecCC---CceEEEEEECCCCCEEEEEcCC--------CeEEEEECCC
Confidence            55667777653      34788888766533211111   111223333 356777777654        3467889887


Q ss_pred             CceEECCCCCC-CCCCceEE-EECCEEEEEccCCCCccCCCccceE
Q 016328          200 KKWQDLPPLPV-PRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       200 ~~W~~~~~~~~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      .+-..  .+.. ...-.+++ .-++++++.|+.++     .+..|+
T Consensus       196 ~~~~~--~~~~h~~~v~~l~~spd~~~l~s~s~dg-----~i~iwd  234 (321)
T 3ow8_A          196 GKLLH--TLEGHAMPIRSLTFSPDSQLLVTASDDG-----YIKIYD  234 (321)
T ss_dssp             TEEEE--EECCCSSCCCEEEECTTSCEEEEECTTS-----CEEEEE
T ss_pred             CcEEE--EEcccCCceeEEEEcCCCCEEEEEcCCC-----eEEEEE
Confidence            65321  1111 11112222 23667777777543     355665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.036  Score=56.69  Aligned_cols=95  Identities=8%  Similarity=0.019  Sum_probs=51.5

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE--C--CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--K--NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~  166 (391)
                      .+..+|....++..+..+......-..+.+  +  +..++.|+.+      ..+.+||..+++|..+..+... ...-.+
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~~~~~~~~~~~~~~h-~~~V~~  104 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVHAVH-SASVNS  104 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEEETTEEEEEEEECCC-SSCEEE
T ss_pred             cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEECCCCcccccccccCC-CCCeEE
Confidence            455555554455544443332222222332  2  5677777764      3488899988888765544331 112223


Q ss_pred             EEEe-C--CEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          167 MVTD-G--RYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       167 ~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++.. +  +.+++.|+.+        ..+..||..+.
T Consensus       105 v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~  133 (753)
T 3jro_A          105 VQWAPHEYGPLLLVASSD--------GKVSVVEFKEN  133 (753)
T ss_dssp             EEECCGGGCSEEEEEETT--------SEEEEEECCSS
T ss_pred             EEECCCCCCCEEEEEeCC--------CcEEEEEeecC
Confidence            3333 3  5677777653        45677887765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.50  E-value=0.43  Score=44.95  Aligned_cols=23  Identities=4%  Similarity=0.120  Sum_probs=16.3

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      ++.+.+.|+.++     .+..||..+.+
T Consensus       131 ~~~~l~sgs~dg-----~i~vwd~~~~~  153 (464)
T 3v7d_B          131 EDNYVITGADDK-----MIRVYDSINKK  153 (464)
T ss_dssp             ETTEEEEEETTS-----CEEEEETTTTE
T ss_pred             CCCEEEEEcCCC-----cEEEEECCCCc
Confidence            555666676555     67888988877

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.43  E-value=0.3  Score=42.13  Aligned_cols=172  Identities=14%  Similarity=0.071  Sum_probs=80.8

Q ss_pred             cCEEEE-ecCCCCcccceeEeeecCCCCe-eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCC
Q 016328           33 ADFFWA-SSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        33 ~~~ly~-~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      ++.+|+ .....     +.+..||+.+.. ...+........+++....+...-... ...+..||+.............
T Consensus        34 ~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~  107 (270)
T 1rwi_B           34 AGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGL  107 (270)
T ss_dssp             TCCEEEEECSSS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSC
T ss_pred             CCCEEEEccCCC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCc
Confidence            567888 53322     356788887766 433322111223333322221111111 3467788877765443321111


Q ss_pred             CccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCC
Q 016328          111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGP  188 (391)
Q Consensus       111 ~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~  188 (391)
                       ..-.+++.. ++++|+....      ...+.+||..+...........   ....+++.. +++||+....        
T Consensus       108 -~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~--------  169 (270)
T 1rwi_B          108 -NYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD--------  169 (270)
T ss_dssp             -SSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG--------
T ss_pred             -CCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC--------
Confidence             111233332 5678887543      2358888876655443321111   111234443 5789987532        


Q ss_pred             cceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEEcc
Q 016328          189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG  229 (391)
Q Consensus       189 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG  229 (391)
                      ...+.+||+.+..-........ ..-..++.. ++.||+...
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~  210 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEH  210 (270)
T ss_dssp             GTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEET
T ss_pred             CCEEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEEC
Confidence            3578899998776544321111 111233332 457888753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.41  E-value=0.19  Score=44.71  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=49.0

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++++++.|+.+      ..+.+||..+.+-...  +... ...-.+++. .++.+++.|+.+        ..+..||+.+
T Consensus        76 ~~~~l~s~~~d------~~i~vwd~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~  138 (312)
T 4ery_A           76 DSNLLVSASDD------KTLKIWDVSSGKCLKT--LKGH-SNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVKT  138 (312)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTCCEEEE--EECC-SSCEEEEEECSSSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEECCC------CEEEEEECCCCcEEEE--EcCC-CCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCC
Confidence            45667777654      3588899887653321  1110 111122222 245667777654        3467889877


Q ss_pred             CceEECCCCCCCCCCceEEE--ECCEEEEEccCCCCccCCCccceE
Q 016328          200 KKWQDLPPLPVPRYAPATQL--WRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      .+-..  .++.....-....  -++++++.|+.++     .+..|+
T Consensus       139 ~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd  177 (312)
T 4ery_A          139 GKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWD  177 (312)
T ss_dssp             CCEEE--EECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             CEEEE--EecCCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEE
Confidence            65321  1111111111222  2566777776543     355555

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.34  E-value=0.08  Score=47.47  Aligned_cols=98  Identities=8%  Similarity=0.007  Sum_probs=46.5

Q ss_pred             cccccccc--cCceEEccCCCCCccCceEEEE-C-CEEEEEeccCCCCCCcceeEEEECCCC-CeeeCCCCCCCCCcceE
Q 016328           91 TFQDLPAP--ELKWEKMKAAPVPRLDGAAIQI-K-NLLYVFAGYGSIDYVHSHVDIYNFTDN-TWGGRFDMPREMAHSHL  165 (391)
Q Consensus        91 ~~~~~d~~--~~~W~~~~~~p~~r~~~~~~~~-~-~~vyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~~~r~~~  165 (391)
                      .+..|+..  +.+++.+..++.+..-..++.. + ..+|+.+..+      ..+.+||+... ..+....++..  ....
T Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~--~~~~  132 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA------GNVSVTRLEDGLPVGVVDVVEGL--DGCH  132 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT------TEEEEEEEETTEEEEEEEEECCC--TTBC
T ss_pred             eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC------CeEEEEECCCCccccccccccCC--CCce
Confidence            45555554  6677665544332222233322 3 3566665322      34777877322 22222222221  1112


Q ss_pred             EEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCCC-CceEE
Q 016328          166 GMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTET-KKWQD  204 (391)
Q Consensus       166 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~-~~W~~  204 (391)
                      .++.  .+..||+.+..        ...+..||..+ .+...
T Consensus       133 ~~~~s~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A          133 SANISPDNRTLWVPALK--------QDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             CCEECTTSSEEEEEEGG--------GTEEEEEEECTTSCEEE
T ss_pred             EEEECCCCCEEEEecCC--------CCEEEEEEecCCCceee
Confidence            2333  24467776522        35688899887 55543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.33  E-value=0.12  Score=48.19  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=53.3

Q ss_pred             cccccccccCceEEccCCC---CCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceE
Q 016328           91 TFQDLPAPELKWEKMKAAP---VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHL  165 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~  165 (391)
                      .+..+|..+.+.....+..   .+......+.+  ++.+|+.++.+      ..+.+||+.+.+-...-....   ..-.
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~~---~~~~  215 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLTG---KWSK  215 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECSS---SSEE
T ss_pred             eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCCC---CCee
Confidence            5778888776655432221   11111122333  67888888753      458899998765433211111   1122


Q ss_pred             EEEEe--CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEE
Q 016328          166 GMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD  204 (391)
Q Consensus       166 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~  204 (391)
                      +++..  +..+|+.++.        ...+.+||+.+.+...
T Consensus       216 ~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          216 ILLYDPIRDLVYCSNWI--------SEDISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEEETTTTEEEEEETT--------TTEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCEEEEEecC--------CCcEEEEECCCCcEEE
Confidence            33333  4567777653        2468899998776543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.27  E-value=0.17  Score=44.51  Aligned_cols=155  Identities=12%  Similarity=0.038  Sum_probs=86.4

Q ss_pred             eEEEEEeC-CEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccce
Q 016328          164 HLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW  242 (391)
Q Consensus       164 ~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  242 (391)
                      .++++..+ +.||+..|..+      .+.+..+|+++.+=...-+++.......++..+++||+..-.++     ...++
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~-----~v~vi   91 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYG------RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKN-----IGFIY   91 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTT------TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCS-----EEEEE
T ss_pred             cccEEEeCCCeEEEECCCCC------CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCC-----EEEEE
Confidence            45676665 89999877432      47799999999875443334443344567778999999964322     23333


Q ss_pred             EeeeecCCcccCCceeecCCCCC-CcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCc-E
Q 016328          243 SLAVKDGKPLEKEWRTEIPIPRG-GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK-W  319 (391)
Q Consensus       243 ~~~~~~~d~~~~~W~~~~~~p~~-~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~-W  319 (391)
                      +       +++.  +.+...+.+ ..+.+.+.-++++|+..|.                       +.++.+| .+.+ -
T Consensus        92 D-------~~t~--~v~~~i~~g~~~g~glt~Dg~~l~vs~gs-----------------------~~l~viD~~t~~v~  139 (266)
T 2iwa_A           92 D-------RRTL--SNIKNFTHQMKDGWGLATDGKILYGSDGT-----------------------SILYEIDPHTFKLI  139 (266)
T ss_dssp             E-------TTTT--EEEEEEECCSSSCCEEEECSSSEEEECSS-----------------------SEEEEECTTTCCEE
T ss_pred             E-------CCCC--cEEEEEECCCCCeEEEEECCCEEEEECCC-----------------------CeEEEEECCCCcEE
Confidence            2       3332  222222221 2233444445678887542                       2488888 5533 2


Q ss_pred             EEcCC--CCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          320 KVLPS--MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       320 ~~v~~--~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      ..++-  .+.|..... .+...+++||+--..+            ++|.+.|+++++
T Consensus       140 ~~I~Vg~~~~p~~~~n-ele~~dg~lyvn~~~~------------~~V~vID~~tg~  183 (266)
T 2iwa_A          140 KKHNVKYNGHRVIRLN-ELEYINGEVWANIWQT------------DCIARISAKDGT  183 (266)
T ss_dssp             EEEECEETTEECCCEE-EEEEETTEEEEEETTS------------SEEEEEETTTCC
T ss_pred             EEEEECCCCcccccce-eEEEECCEEEEecCCC------------CeEEEEECCCCc
Confidence            22221  112222221 2233488888653221            389999999888

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.18  E-value=0.046  Score=50.40  Aligned_cols=144  Identities=15%  Similarity=0.118  Sum_probs=74.5

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAAP  109 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p  109 (391)
                      +.++|+.|+.++     .+..||+.+++  ..++...  ...++.....+ ...........+..+|..+++-...-.. 
T Consensus        43 g~~l~~~~~~d~-----~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-  114 (391)
T 1l0q_A           43 GTKVYVANAHSN-----DVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-  114 (391)
T ss_dssp             SSEEEEEEGGGT-----EEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-
T ss_pred             CCEEEEECCCCC-----eEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-
Confidence            346777776444     67889998887  3333211  11122221111 1111111224677888877654332221 


Q ss_pred             CCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCC
Q 016328          110 VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQC  185 (391)
Q Consensus       110 ~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~  185 (391)
                       ...-.+++..  +..+|+.++.+      ..+.+||+.+.+....-....    ....++..  ++.||+.++.     
T Consensus       115 -~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~dg~~l~~~~~~-----  178 (391)
T 1l0q_A          115 -GKSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGR----SPKGIAVTPDGTKVYVANFD-----  178 (391)
T ss_dssp             -SSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCS----SEEEEEECTTSSEEEEEETT-----
T ss_pred             -CCCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCC----CcceEEECCCCCEEEEEeCC-----
Confidence             1112233332  34677776543      358999998876654322222    12333333  4477777653     


Q ss_pred             CCCcceeEEEeCCCCceE
Q 016328          186 RGPTAHTFVLDTETKKWQ  203 (391)
Q Consensus       186 ~~~~~~~~~yd~~~~~W~  203 (391)
                         ...+..||+.+.+-.
T Consensus       179 ---~~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          179 ---SMSISVIDTVTNSVI  193 (391)
T ss_dssp             ---TTEEEEEETTTTEEE
T ss_pred             ---CCEEEEEECCCCeEE
Confidence               256889999887543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.17  E-value=0.74  Score=43.30  Aligned_cols=132  Identities=10%  Similarity=0.071  Sum_probs=64.2

Q ss_pred             ECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          120 IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       120 ~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      .++..++.|+.+      ..+.+||..+.+-...  +... ...-.+++. .++..++.|+.+        ..+..||..
T Consensus       278 ~~~~~l~~~~~d------~~i~vwd~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~sg~~d--------g~i~vwd~~  340 (464)
T 3v7d_B          278 GHGNIVVSGSYD------NTLIVWDVAQMKCLYI--LSGH-TDRIYSTIYDHERKRCISASMD--------TTIRIWDLE  340 (464)
T ss_dssp             EETTEEEEEETT------SCEEEEETTTTEEEEE--ECCC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEETT
T ss_pred             CCCCEEEEEeCC------CeEEEEECCCCcEEEE--ecCC-CCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECC
Confidence            345566666654      2488899876653322  1111 111223333 355566677653        347789987


Q ss_pred             CCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEE
Q 016328          199 TKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRL  278 (391)
Q Consensus       199 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i  278 (391)
                      +.+-  +..+......-.+...++..++.|+.++     .+..|++       .+..-..... ........+...++++
T Consensus       341 ~~~~--~~~~~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          341 NGEL--MYTLQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDA-------NDYSRKFSYH-HTNLSAITTFYVSDNI  405 (464)
T ss_dssp             TTEE--EEEECCCSSCEEEEEECSSEEEEEETTS-----EEEEEET-------TTCCEEEEEE-CTTCCCEEEEEECSSE
T ss_pred             CCcE--EEEEeCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEEC-------CCCceeeeec-CCCCccEEEEEeCCCE
Confidence            7542  2222222222334445677777777543     3556653       2221111111 1111222445567777


Q ss_pred             EEEeC
Q 016328          279 LVIGG  283 (391)
Q Consensus       279 ~v~GG  283 (391)
                      ++.|+
T Consensus       406 l~~~~  410 (464)
T 3v7d_B          406 LVSGS  410 (464)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            77776

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.088  Score=47.88  Aligned_cols=96  Identities=10%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-C--CEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-G--RYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      ++..++.|+.+      ..+.+||...++++.+..+... ...-.+++.. +  +.+++.|+.+        ..+..||.
T Consensus        22 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d--------g~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSSD------KTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD--------GKVLIWKE   86 (379)
T ss_dssp             SSSEEEEEETT------SCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------SCEEEEEE
T ss_pred             CCCEEEEEECC------CcEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccC--------CEEEEEEc
Confidence            45566677654      2478888877777665444331 1122334432 2  5677777654        34678898


Q ss_pred             CCCceEECCCCCCCCCCceEEEE--C--CEEEEEccCC
Q 016328          198 ETKKWQDLPPLPVPRYAPATQLW--R--GRLHVMGGSG  231 (391)
Q Consensus       198 ~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~  231 (391)
                      .+.+|..+..+........++.+  +  +.+++.|+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            88888776544422222222222  2  5677777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.18  Score=46.50  Aligned_cols=64  Identities=11%  Similarity=0.090  Sum_probs=33.1

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      .+..+++|+.+      ..+.+||..+.+-...-....   ..-.+++. .++.+++.|+.+        ..+..||..+
T Consensus       216 ~~~~~~~~~~~------g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~  278 (425)
T 1r5m_A          216 DDDKFVIPGPK------GAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDD--------GTLRIWHGGN  278 (425)
T ss_dssp             ETTEEEEECGG------GCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETT--------SCEEEECSSS
T ss_pred             CCCEEEEEcCC------CeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCC--------CEEEEEECCC
Confidence            34446666653      358899988764322111111   11223333 355566666643        3467788776


Q ss_pred             Cc
Q 016328          200 KK  201 (391)
Q Consensus       200 ~~  201 (391)
                      .+
T Consensus       279 ~~  280 (425)
T 1r5m_A          279 GN  280 (425)
T ss_dssp             BS
T ss_pred             Cc
Confidence            43

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.12  E-value=0.081  Score=48.11  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      +++++++|+.+      ..+.+||..+.+|+.+..+... ...-.+++.. ++.+++.|+.+        ..+..||..+
T Consensus        19 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~   83 (372)
T 1k8k_C           19 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD--------RNAYVWTLKG   83 (372)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC--------CeEEEEECCC
Confidence            45667777653      3588999998877665544331 1122233333 56667777643        3467888888


Q ss_pred             CceEECCCCC-CCCCCceEEE-ECCEEEEEccCCCCccCCCccceEe
Q 016328          200 KKWQDLPPLP-VPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       200 ~~W~~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      .++.....+. ....-.++.. -++++++.|+.++     .+..|++
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~  125 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYF  125 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEE
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEe
Confidence            8766543222 2222222222 2566777776542     3556664

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.07  E-value=0.4  Score=43.37  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=47.5

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      ++..++.||.+      ..+.+||+.+..  ......+..............+++ ++.|+.+        ..+..||+.
T Consensus       108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d--------~~i~~wd~~  172 (340)
T 1got_B          108 SGNYVACGGLD------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD--------TTCALWDIE  172 (340)
T ss_dssp             TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT--------SCEEEEETT
T ss_pred             CCCEEEEEeCC------CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC--------CcEEEEECC
Confidence            45667777764      347788887643  111111111001111122234555 4555543        456788988


Q ss_pred             CCceEECCCCCC-CCCCceEEE-ECCEEEEEccCCCCccCCCccceE
Q 016328          199 TKKWQDLPPLPV-PRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       199 ~~~W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      +.+-..  .+.. ...-.+++. -++++++.|+.++     .+..|+
T Consensus       173 ~~~~~~--~~~~h~~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd  212 (340)
T 1got_B          173 TGQQTT--TFTGHTGDVMSLSLAPDTRLFVSGACDA-----SAKLWD  212 (340)
T ss_dssp             TTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             CCcEEE--EEcCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEE
Confidence            765332  1111 111112222 2566778877643     356666

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.99  E-value=0.71  Score=40.21  Aligned_cols=170  Identities=11%  Similarity=0.007  Sum_probs=81.4

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-eecCCCC-CCCCceeeEeecCcccccccccccccccccccCceEEccCCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNG-PQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~-~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      ++.+|+.....     +.+..||+. .+ ..++.+. .....++.....+...........+..||+. .++........
T Consensus        30 ~g~l~v~~~~~-----~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~  102 (300)
T 2qc5_A           30 DGKVWFTQHKA-----NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQP  102 (300)
T ss_dssp             TSCEEEEETTT-----TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred             CCCEEEEcCCC-----CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCC
Confidence            57788875422     367788888 55 3222111 1112233322222111111122357788877 66654321111


Q ss_pred             CccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCC
Q 016328          111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGP  188 (391)
Q Consensus       111 ~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  188 (391)
                      ...-++++.. ++.+|+....      ...+.+||+. .+..... ++.. ......++. -+++||+....        
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~-~~~~-~~~~~~i~~d~~g~l~v~~~~--------  165 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD-LPNK-GSYPAFITLGSDNALWFTENQ--------  165 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE-CSST-TCCEEEEEECTTSSEEEEETT--------
T ss_pred             CCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc-CCCC-CCCceeEEECCCCCEEEEecC--------
Confidence            1122233332 5688887532      2358889987 6555432 2211 122234444 35678886421        


Q ss_pred             cceeEEEeCCCCceEECCCCCCCCCC-ceEEEE-CCEEEEEc
Q 016328          189 TAHTFVLDTETKKWQDLPPLPVPRYA-PATQLW-RGRLHVMG  228 (391)
Q Consensus       189 ~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~G  228 (391)
                      ...+++||+ +.+...+. ++..... ..++.. ++.||+..
T Consensus       166 ~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          166 NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEc
Confidence            356889998 66665542 2211112 223332 56788764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.85  E-value=0.81  Score=39.80  Aligned_cols=169  Identities=9%  Similarity=0.032  Sum_probs=80.2

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-eecCCC-CCCCCceeeEeecCcccccccccccccccccccCceEEccCCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNN-GPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~-~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      ++.+|+.....     +.+..||+. +. ...+.. ......+++....+..-........+..+|+. .+.+... +|.
T Consensus        25 ~g~l~v~~~~~-----~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~   96 (299)
T 2z2n_A           25 KGKVWITQHKA-----NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYT-LPN   96 (299)
T ss_dssp             TSCEEEEETTT-----TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-CSS
T ss_pred             CCCEEEEecCC-----CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEe-CCC
Confidence            56788764322     357888888 55 332211 11112233222222111111112356777775 4444433 221


Q ss_pred             CccC-ceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCC
Q 016328          111 PRLD-GAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRG  187 (391)
Q Consensus       111 ~r~~-~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~  187 (391)
                      .-.. ++++.. ++++|+....      ...+.+||+ +.+..... ++.. ......++.. ++++|+..-.       
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~-~~~~-~~~~~~i~~~~~g~l~v~~~~-------  160 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYE-LPNK-GSYPSFITLGSDNALWFTENQ-------  160 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSST-TCCEEEEEECTTSCEEEEETT-------
T ss_pred             cCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEec-CCCC-CCCCceEEEcCCCCEEEEeCC-------
Confidence            1112 233333 4688887532      235888998 55555432 1211 1222344443 6789886421       


Q ss_pred             CcceeEEEeCCCCceEECCCCCCCCC-CceEEEE-CCEEEEEc
Q 016328          188 PTAHTFVLDTETKKWQDLPPLPVPRY-APATQLW-RGRLHVMG  228 (391)
Q Consensus       188 ~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~G  228 (391)
                       ...+++||+ +.+..... .+.... -..++.. +++||+..
T Consensus       161 -~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          161 -NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             -TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             -CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEc
Confidence             357899999 77766542 111111 1233332 46788775

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.6  Score=40.87  Aligned_cols=24  Identities=29%  Similarity=0.128  Sum_probs=16.7

Q ss_pred             ecCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           32 VADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      -++..++.|+.++     .+..||..+..
T Consensus        27 ~~~~~l~s~~~dg-----~v~vw~~~~~~   50 (313)
T 3odt_A           27 VDDSKVASVSRDG-----TVRLWSKDDQW   50 (313)
T ss_dssp             EETTEEEEEETTS-----EEEEEEESSSE
T ss_pred             cCCCEEEEEEcCC-----cEEEEECCCCE
Confidence            4566677777665     67788887765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.72  E-value=0.23  Score=44.87  Aligned_cols=102  Identities=7%  Similarity=0.012  Sum_probs=49.3

Q ss_pred             ccccccccccCceEEccCCCCCccC-ceEEEE-CC-EEEEEeccCCCCCCcceeEEEECC-CCCeeeCCCCCC----CC-
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLD-GAAIQI-KN-LLYVFAGYGSIDYVHSHVDIYNFT-DNTWGGRFDMPR----EM-  160 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~vyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~~~p~----~~-  160 (391)
                      ..+..|+..+.+++.+..+...... ..++.- ++ .||+.+..      ...+.+||+. +.+.+.+..++.    |. 
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~  136 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRP  136 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSST
T ss_pred             ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCc
Confidence            3677788776666665543211111 223322 33 57776532      1347777774 233333221110    10 


Q ss_pred             ---CcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCC-CCceEEC
Q 016328          161 ---AHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTE-TKKWQDL  205 (391)
Q Consensus       161 ---~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~-~~~W~~~  205 (391)
                         ....+.++. -++++|+.+..        ...+..||+. +.+...+
T Consensus       137 ~~~~~~~~~~~~spdg~l~v~~~~--------~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          137 EQDGSHIHYTDLTPDNRLAVIDLG--------SDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             TCSSCCEEEEEECTTSCEEEEETT--------TTEEEEEEECTTSCEEEE
T ss_pred             cccCCCceEEEECCCCcEEEEeCC--------CCEEEEEEECCCCcEEEe
Confidence               111233343 35667776532        3567888887 5555543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.63  E-value=1.2  Score=39.99  Aligned_cols=188  Identities=12%  Similarity=0.134  Sum_probs=86.3

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCC--CCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTD--NTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      +++.++.|+.+      ..+.+||...  ..++.+..+... ...-.+++. -++.+++.|+.++        .+..||.
T Consensus       118 ~g~~las~s~D------~~v~iwd~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~--------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRD------KSVWIWETDESGEEYECISVLQEH-SQDVKHVIWHPSEALLASSSYDD--------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETT------SCEEEEECCTTCCCCEEEEEECCC-SSCEEEEEECSSSSEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEeCC------CEEEEEeccCCCCCeEEEEEeccC-CCceEEEEECCCCCEEEEEcCCC--------eEEEEEC
Confidence            45667777754      2477888743  345443333221 111122332 2566777777643        3556777


Q ss_pred             CCCceEECCCCCCCCCC-ceEEEE-C--CEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCC--CCcceeE
Q 016328          198 ETKKWQDLPPLPVPRYA-PATQLW-R--GRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR--GGPHRAC  271 (391)
Q Consensus       198 ~~~~W~~~~~~~~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~~~~~~~  271 (391)
                      .+..|+.+..+...... .++... +  +..++.|+.+     ..+..|++.... ......|.....++.  ...-.++
T Consensus       183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v  256 (330)
T 2hes_X          183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD-----STVRVWKYMGDD-EDDQQEWVCEAILPDVHKRQVYNV  256 (330)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT-----SCEEEEEEEEEC-TTSCEEEEEEEECCSCCSSCEEEE
T ss_pred             CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC-----CeEEEEEecCCC-ccccceeEEeeecccccccceEEE
Confidence            77767665433321111 122222 2  3455666643     246677753211 112334554433332  1111122


Q ss_pred             EEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEE--E--CCEEEEE
Q 016328          272 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVL--V--NNSIVIV  346 (391)
Q Consensus       272 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~--~--~~~l~i~  346 (391)
                      +...+.+++.||.++.                      |..+| .+..|..+..............+.  .  ++++++.
T Consensus       257 ~~s~~~~l~s~~~dg~----------------------v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las  314 (330)
T 2hes_X          257 AWGFNGLIASVGADGV----------------------LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT  314 (330)
T ss_dssp             EECTTSCEEEEETTSC----------------------EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred             EEcCCCEEEEEeCCCE----------------------EEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence            2224456667776432                      56666 666776553322111110111122  2  4677888


Q ss_pred             ccccC
Q 016328          347 GGTTE  351 (391)
Q Consensus       347 GG~~~  351 (391)
                      ||.++
T Consensus       315 ~s~Dg  319 (330)
T 2hes_X          315 GGDDG  319 (330)
T ss_dssp             EETTS
T ss_pred             ecCCC
Confidence            88764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.51  E-value=0.29  Score=42.90  Aligned_cols=153  Identities=14%  Similarity=0.072  Sum_probs=87.3

Q ss_pred             ceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccce
Q 016328          163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW  242 (391)
Q Consensus       163 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  242 (391)
                      +..++...++.||+..|..+        .+.++|+++.+=..-- ++..-.+.+++..+++||+....++     ...+|
T Consensus        56 ftqGL~~~~~~Ly~stG~~g--------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~-----~v~V~  121 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQG--------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEG-----LLFTW  121 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTT--------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSC-----EEEEE
T ss_pred             ccceEEEECCEEEEEcCCCC--------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCC-----EEEEE
Confidence            34567778999999988643        3788999987633222 4443344567788999999965432     23333


Q ss_pred             EeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcE-E
Q 016328          243 SLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW-K  320 (391)
Q Consensus       243 ~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W-~  320 (391)
                      +       +++.+-  +...+....+.+.+.-+++||+.-|.                       +.++.+| .+.+- .
T Consensus       122 D-------~~Tl~~--~~ti~~~~eGwGLt~Dg~~L~vSdGs-----------------------~~l~~iDp~T~~v~~  169 (268)
T 3nok_A          122 S-------GMPPQR--ERTTRYSGEGWGLCYWNGKLVRSDGG-----------------------TMLTFHEPDGFALVG  169 (268)
T ss_dssp             E-------TTTTEE--EEEEECSSCCCCEEEETTEEEEECSS-----------------------SEEEEECTTTCCEEE
T ss_pred             E-------CCcCcE--EEEEeCCCceeEEecCCCEEEEECCC-----------------------CEEEEEcCCCCeEEE
Confidence            2       333332  22222222334666778889998762                       2488888 55432 2


Q ss_pred             EcCC--CCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          321 VLPS--MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       321 ~v~~--~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      .+.-  -+.+..... -+...+++||+- -+. .          ++|.+.|+++.+
T Consensus       170 ~I~V~~~g~~v~~lN-eLe~~dG~lyan-vw~-s----------~~I~vIDp~TG~  212 (268)
T 3nok_A          170 AVQVKLRGQPVELIN-ELECANGVIYAN-IWH-S----------SDVLEIDPATGT  212 (268)
T ss_dssp             EEECEETTEECCCEE-EEEEETTEEEEE-ETT-C----------SEEEEECTTTCB
T ss_pred             EEEeCCCCccccccc-ccEEeCCEEEEE-ECC-C----------CeEEEEeCCCCc
Confidence            2211  121211111 133458888852 221 1          379999998877

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.50  E-value=0.14  Score=46.59  Aligned_cols=105  Identities=10%  Similarity=0.099  Sum_probs=55.4

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++++++.||.+      ..+.+||..+++|.....+.......-.+++. -++++++.|+.++        .+..||..+
T Consensus        27 ~g~~las~~~D------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--------~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGD------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--------TTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETT------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS--------CEEEEEECC
T ss_pred             CCCEEEEEcCC------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC--------cEEEEEccC
Confidence            56777777765      24778888888776432221111122223333 3567777777643        355677777


Q ss_pred             CceEECCCCCCCCCC-ceEEE-ECCEEEEEccCCCCccCCCccceEe
Q 016328          200 KKWQDLPPLPVPRYA-PATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ..++.+..+...... .+++. -++++++.|+.+.     .+..|++
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~  134 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEV  134 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEE
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEEC
Confidence            666554433221111 12222 2567777777643     4666764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.41  E-value=0.48  Score=44.36  Aligned_cols=200  Identities=11%  Similarity=0.061  Sum_probs=98.5

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CC-EEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GR-YIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      +++.+++++.+..   ...++++|+.+.+...+...+.    ...+.+.. ++ +|++.+..++      ...++.+|+.
T Consensus       189 dg~~la~~s~~~~---~~~i~~~d~~tg~~~~l~~~~~----~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~  255 (415)
T 2hqs_A          189 DGSKLAYVTFESG---RSALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLA  255 (415)
T ss_dssp             TSSEEEEEECTTS---SCEEEEEETTTCCEEEEECCSS----CEEEEEECTTSSEEEEEECTTS------SCEEEEEETT
T ss_pred             CCCEEEEEEecCC---CcEEEEEECCCCcEEEeecCCC----cccCEEEcCCCCEEEEEEecCC------CceEEEEECC
Confidence            4555555554432   2469999999988776544332    12233332 44 4555554332      4679999999


Q ss_pred             CCceEECCCCCCCCCCceEE-EECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEE--EC
Q 016328          199 TKKWQDLPPLPVPRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV--VD  275 (391)
Q Consensus       199 ~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~--~~  275 (391)
                      +.+...+..-...  ....+ .-+++.+++++....    ....|..     |..+.+-+.+...  .. ....+.  -+
T Consensus       256 ~~~~~~l~~~~~~--~~~~~~spdg~~l~~~s~~~g----~~~i~~~-----d~~~~~~~~l~~~--~~-~~~~~~~spd  321 (415)
T 2hqs_A          256 SGQIRQVTDGRSN--NTEPTWFPDSQNLAFTSDQAG----RPQVYKV-----NINGGAPQRITWE--GS-QNQDADVSSD  321 (415)
T ss_dssp             TCCEEECCCCSSC--EEEEEECTTSSEEEEEECTTS----SCEEEEE-----ETTSSCCEECCCS--SS-EEEEEEECTT
T ss_pred             CCCEEeCcCCCCc--ccceEECCCCCEEEEEECCCC----CcEEEEE-----ECCCCCEEEEecC--CC-cccCeEECCC
Confidence            8887766532211  11112 225554444442211    1222322     2444433322211  11 112222  25


Q ss_pred             CEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCC
Q 016328          276 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHP  354 (391)
Q Consensus       276 ~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~  354 (391)
                      ++.+++++....                   ...++.+| .+.+...+....    .........+++.+++++.+... 
T Consensus       322 G~~l~~~~~~~g-------------------~~~i~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~l~~~s~~~~~-  377 (415)
T 2hqs_A          322 GKFMVMVSSNGG-------------------QQHIAKQDLATGGVQVLSSTF----LDETPSLAPNGTMVIYSSSQGMG-  377 (415)
T ss_dssp             SSEEEEEEECSS-------------------CEEEEEEETTTCCEEECCCSS----SCEEEEECTTSSEEEEEEEETTE-
T ss_pred             CCEEEEEECcCC-------------------ceEEEEEECCCCCEEEecCCC----CcCCeEEcCCCCEEEEEEcCCCc-
Confidence            555555543211                   12478888 777776654321    12222234567777777654321 


Q ss_pred             cccceeEecceEEEecCccccccCC
Q 016328          355 TTKKMVLVGEIFQFNLNTLVSAFYP  379 (391)
Q Consensus       355 ~~~~~~~~~~v~~~d~~~~~~~~lp  379 (391)
                              ..+|.+|++......++
T Consensus       378 --------~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          378 --------SVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             --------EEEEEEETTSCCEEECC
T ss_pred             --------cEEEEEECCCCcEEEee
Confidence                    26888888655444443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.32  E-value=1.5  Score=39.18  Aligned_cols=98  Identities=13%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             ccccccccccCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCC------C
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM------A  161 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~------~  161 (391)
                      ..+..+|+.+.+-...-+.  ...-+.++..  ++.+|+.+..+      ..+.+||+.+.+-...-+++...      +
T Consensus        69 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  140 (353)
T 3vgz_A           69 GVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRP  140 (353)
T ss_dssp             EEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEESCCCCCCSSCCC
T ss_pred             ccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEecCCCccccccCC
Confidence            3677788776653322111  1122333333  34688876542      36899999887643321221100      0


Q ss_pred             cceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCCCCce
Q 016328          162 HSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (391)
Q Consensus       162 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (391)
                      .....++.  .++.+|+.+...       ...++.||+.+.+-
T Consensus       141 ~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          141 LQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIKL  176 (353)
T ss_dssp             CEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTEE
T ss_pred             CCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCce
Confidence            11233444  346788876211       35688999987653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.29  E-value=0.27  Score=42.53  Aligned_cols=107  Identities=6%  Similarity=-0.046  Sum_probs=57.1

Q ss_pred             cccccccccccccCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCC-CCeeeCCCCCCCCCcce
Q 016328           87 ILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTD-NTWGGRFDMPREMAHSH  164 (391)
Q Consensus        87 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~~~r~~  164 (391)
                      .....+..+|..+.+...+...+  ..-.++... +++.+++++.       ..++++|+.+ .+...+...+.. ....
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~-~~~~   88 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTP--ELFEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVDTGFAT-ICNN   88 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEES--SCCEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECCCTTCC-CBCS
T ss_pred             CcceeEEEEeCCCCceeeeccCC--cceEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEecccccc-cccc
Confidence            34446778888777655443321  111222222 4555555541       3599999998 777665433321 1111


Q ss_pred             EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      .....-+++.+++++.....    ...++.+|..+..-+.+..
T Consensus        89 ~~~~spdg~~l~~~~~~~~~----~~~l~~~~~~~~~~~~~~~  127 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFG----KSAIYLLPSTGGTPRLMTK  127 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTS----SCEEEEEETTCCCCEECCS
T ss_pred             ceEECCCCCEEEEEEeCCCC----cceEEEEECCCCceEEeec
Confidence            11222355555555533222    5788999988877665543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.27  E-value=1.3  Score=40.24  Aligned_cols=101  Identities=13%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      +++.++.|+.+.      .+.+||..+.+-...-....   ..-.+++..  ++.+++.++.++        .+..||..
T Consensus       150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~~h~---~~v~~v~~s~~~~~~~~s~~~dg--------~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYNAHS---SEVNCVAACPGKDTIFLSCGEDG--------RILLWDTR  212 (357)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTTEEEEEECCCS---SCEEEEEECTTCSSCEEEEETTS--------CEEECCTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEEcCCC---CCEEEEEEccCCCceeeeeccCC--------ceEEEECC
Confidence            566777777642      47889988775433211111   112233332  335777777543        46678887


Q ss_pred             CCceEECCCCCCCCCCceEEEE---CCEEEEEccCCCCccCCCccceE
Q 016328          199 TKKWQDLPPLPVPRYAPATQLW---RGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       199 ~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      +.+-...-..........++.+   ++.+++.|+.+.     .+..|+
T Consensus       213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd  255 (357)
T 4g56_B          213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVN  255 (357)
T ss_dssp             SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEE
T ss_pred             CCceeeeeeeccccccccchhhhhcccceEEEeeccc-----ceeEEE
Confidence            6543222222212222222232   456777776543     355565

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.25  E-value=0.69  Score=40.91  Aligned_cols=123  Identities=7%  Similarity=-0.030  Sum_probs=59.0

Q ss_pred             ccccccccccCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEE
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~  167 (391)
                      ..+..+|..+.+......+...........+  +++.++.|+.+      ..+.+||..+.+....-..+.   ..-.++
T Consensus       119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~---~~i~~~  189 (337)
T 1gxr_A          119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHT---DGASCI  189 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCS---SCEEEE
T ss_pred             CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeeccc---CceEEE
Confidence            3566777776654333322222222222222  45666666654      348899998775443211111   112233


Q ss_pred             EEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEE-ECCEEEEEccCC
Q 016328          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSG  231 (391)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~  231 (391)
                      +.. ++..++.|+.        ...+..||+.+.+-...-..  .....+++. -+++++++|+.+
T Consensus       190 ~~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          190 DISNDGTKLWTGGL--------DNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             EECTTSSEEEEEET--------TSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCCEEEEEec--------CCcEEEEECCCCceEeeecC--CCceEEEEECCCCCEEEEEcCC
Confidence            332 5556666664        34678899887653222111  111222222 356667777643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.18  E-value=1.1  Score=40.18  Aligned_cols=100  Identities=6%  Similarity=0.015  Sum_probs=47.8

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeee-CCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++.+++.|+.+      ..+.++|..+.+-.. +..-+.   ........-+++.++.|+.+        ..+..||..+
T Consensus        91 ~~~~l~s~s~D------~~i~lWd~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~g~~d--------g~v~i~~~~~  153 (321)
T 3ow8_A           91 TLPIAASSSLD------AHIRLWDLENGKQIKSIDAGPV---DAWTLAFSPDSQYLATGTHV--------GKVNIFGVES  153 (321)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTTEEEEEEECCTT---CCCCEEECTTSSEEEEECTT--------SEEEEEETTT
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCCEEEEEeCCCc---cEEEEEECCCCCEEEEEcCC--------CcEEEEEcCC
Confidence            34566666654      358888987765332 111111   11111222356667777643        4567788776


Q ss_pred             CceEECCCCCCCCCCceEE-EECCEEEEEccCCCCccCCCccceE
Q 016328          200 KKWQDLPPLPVPRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      .+-...-.. ......+++ .-++++++.|+.++     .+..|+
T Consensus       154 ~~~~~~~~~-~~~~v~~~~~spdg~~lasg~~dg-----~i~iwd  192 (321)
T 3ow8_A          154 GKKEYSLDT-RGKFILSIAYSPDGKYLASGAIDG-----IINIFD  192 (321)
T ss_dssp             CSEEEEEEC-SSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             CceeEEecC-CCceEEEEEECCCCCEEEEEcCCC-----eEEEEE
Confidence            543211111 111111222 23567777776543     355565

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.21  Score=50.91  Aligned_cols=104  Identities=12%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eC--CEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DG--RYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      ++..++.|+.+      ..+.+||...+++..+..+... ...-.+++. .+  +.+++.|+.++        .+..||.
T Consensus        20 dg~~latg~~d------g~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~Dg--------~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSD------KTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETT------TEEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSCSEEEEEETTS--------CEEEEEE
T ss_pred             CCCeEEEEECC------CcEEEEecCCCCCccceeccCC-cCceEEEEecCCCCCCEEEEEeCCC--------eEEEEEC
Confidence            34566677654      3488888887777766544431 112223443 23  66777777643        4678888


Q ss_pred             CCCceEECCCCCCCCCCceEEEE--C--CEEEEEccCCCCccCCCccceEe
Q 016328          198 ETKKWQDLPPLPVPRYAPATQLW--R--GRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       198 ~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      .+.+|..+..+......-.++.+  +  +.+++.|+.++     .+..|++
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl  130 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEF  130 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEEC
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEe
Confidence            88887766544322222222222  2  56777777543     3455553

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.13  E-value=0.92  Score=42.44  Aligned_cols=103  Identities=10%  Similarity=0.068  Sum_probs=56.4

Q ss_pred             EEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEe
Q 016328          117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD  196 (391)
Q Consensus       117 ~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (391)
                      +...++..++.|+.+      ..+.+||..+.+-...  +..  ..........++.+++.|+.++        .+..||
T Consensus       138 ~~~~d~~~l~~g~~d------g~i~iwd~~~~~~~~~--~~~--h~~~v~~l~~~~~~l~sg~~dg--------~i~vwd  199 (435)
T 1p22_A          138 CLQYDDQKIVSGLRD------NTIKIWDKNTLECKRI--LTG--HTGSVLCLQYDERVIITGSSDS--------TVRVWD  199 (435)
T ss_dssp             EEECCSSEEEEEESS------SCEEEEESSSCCEEEE--ECC--CSSCEEEEECCSSEEEEEETTS--------CEEEEE
T ss_pred             EEEECCCEEEEEeCC------CeEEEEeCCCCeEEEE--EcC--CCCcEEEEEECCCEEEEEcCCC--------eEEEEE
Confidence            344577778888764      3488899877654332  221  1112233334777888887643        467888


Q ss_pred             CCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEe
Q 016328          197 TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       197 ~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ..+.+-..  .+......-.+...++.+++.|+.++     .+..|++
T Consensus       200 ~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~  240 (435)
T 1p22_A          200 VNTGEMLN--TLIHHCEAVLHLRFNNGMMVTCSKDR-----SIAVWDM  240 (435)
T ss_dssp             SSSCCEEE--EECCCCSCEEEEECCTTEEEEEETTS-----CEEEEEC
T ss_pred             CCCCcEEE--EEcCCCCcEEEEEEcCCEEEEeeCCC-----cEEEEeC
Confidence            87765322  12211222233344566777776543     3556653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.11  E-value=0.3  Score=43.55  Aligned_cols=131  Identities=8%  Similarity=0.033  Sum_probs=62.4

Q ss_pred             ecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccCce-E-Ecc
Q 016328           32 VADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKW-E-KMK  106 (391)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W-~-~~~  106 (391)
                      -.+.+|+..+.++     .+..||+.+++  ..++.. ... .+++....+ .......-...+..+|..+.+- . .+.
T Consensus         8 ~~~~~~v~~~~~~-----~v~~~d~~~~~~~~~~~~~-~~~-~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A            8 TSNFGIVVEQHLR-----RISFFSTDTLEILNQITLG-YDF-VDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             CCCEEEEEEGGGT-----EEEEEETTTCCEEEEEECC-CCE-EEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred             CCCEEEEEecCCC-----eEEEEeCcccceeeeEEcc-CCc-ceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence            3577888876443     78899999887  222221 111 122222111 1111112233677888877653 2 222


Q ss_pred             CCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CC-EEEEEeC
Q 016328          107 AAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GR-YIYVVTG  179 (391)
Q Consensus       107 ~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~-~iyv~GG  179 (391)
                      ....++  ++++..  +..+| ++...+ .  ...+.+||+.+.+-...-+...    ..+.++.. ++ .||+.+.
T Consensus        81 ~~~~~~--~~~~~s~dg~~l~-~~~~~~-~--~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           81 EGQSSM--ADVDITPDDQFAV-TVTGLN-H--PFNMQSYSFLKNKFISTIPIPY----DAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             ECSSCC--CCEEECTTSSEEE-ECCCSS-S--SCEEEEEETTTTEEEEEEECCT----TEEEEEECTTSSCEEEEEE
T ss_pred             cCCCCc--cceEECCCCCEEE-EecCCC-C--cccEEEEECCCCCeEEEEECCC----CccceEECCCCCEEEEEec
Confidence            222222  213322  34666 332211 1  1269999998876654322221    22344443 33 5887754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.06  E-value=0.063  Score=49.20  Aligned_cols=96  Identities=14%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++++++.|+.+      ..+.+||..++.|+.+..+.... ..-.+++.. ++++++.|+.+        ..+..||..+
T Consensus        22 ~g~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d--------~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTAT------NQVELYEQDGNGWKHARTFSDHD-KIVTCVDWAPKSNRIVTCSQD--------RNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSS------SCBCEEEEETTEEEECCCBCCCS-SCEEEEEECTTTCCEEEEETT--------SSEEEC----
T ss_pred             CCCEEEEecCC------CEEEEEEccCCceEEEEEEecCC-ceEEEEEEeCCCCEEEEEeCC--------CeEEEEEcCC
Confidence            45666666654      34778888888888876665421 122233333 56677777754        3467788877


Q ss_pred             Cc-eEECCCCCC-CCCCceEEE-ECCEEEEEccCC
Q 016328          200 KK-WQDLPPLPV-PRYAPATQL-WRGRLHVMGGSG  231 (391)
Q Consensus       200 ~~-W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~~  231 (391)
                      .. |.....+.. ...-.+++. -++++++.|+.+
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  121 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA  121 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecC
Confidence            66 443322221 111112222 256667777654

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=94.99  E-value=2.1  Score=40.65  Aligned_cols=59  Identities=14%  Similarity=0.190  Sum_probs=37.5

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++++|+|-|        +..|.||..+++.... ..|. .+. --++....+++|+|-|          +..++||+.+.
T Consensus       158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~-~w~g-i~~-iDAA~~~~g~~YfFkG----------~~y~rfd~~~~  216 (460)
T 1qhu_A          158 DEGILFFQG--------NRKWFWDLTTGTKKER-SWPA-VGN-CTSALRWLGRYYCFQG----------NQFLRFNPVSG  216 (460)
T ss_dssp             SSEEEEEET--------TEEEEEETTTTEEEEE-CCTT-SCC-CSEEEEETTEEEEEET----------TEEEEECTTTC
T ss_pred             CCeEEEEec--------ccEEEEecccceeecc-cCCC-CCc-cchheeeCCceEEEEC----------CEEEEEcCccC
Confidence            678899887        3489999887754431 1111 122 1244445789999966          56778887654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=94.96  E-value=0.38  Score=42.90  Aligned_cols=52  Identities=19%  Similarity=0.088  Sum_probs=25.2

Q ss_pred             CEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEE-ECCEEEEEccCCC
Q 016328          172 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGE  232 (391)
Q Consensus       172 ~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~  232 (391)
                      +.+++.|+.+        ..+..||..+.+-...-... ...-.+++. -++++++.|+.++
T Consensus       185 ~~~~~s~~~d--------~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          185 NPIIVSCGWD--------KLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             SCEEEEEETT--------SCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTC
T ss_pred             CcEEEEEcCC--------CEEEEEECCCCceeeEecCC-CCcEEEEEECCCCCEEEEEeCCC
Confidence            3456666543        34667888776533221111 111112222 2567777777643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=94.80  E-value=0.28  Score=44.72  Aligned_cols=134  Identities=10%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCC-eeeCCCCCCCCCcceEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGRFDMPREMAHSHLGM  167 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~~~r~~~~~  167 (391)
                      .+..||..+..|+.+..+......-..+.+  ++..++.|+.+      ..+.+||..+.+ |.....+... ...-.++
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~  106 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQTLVLLRL-NRAATFV  106 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC------CCCCEEECCCC-SSCEEEE
T ss_pred             EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeccc-CCceEEE
Confidence            566777777777666655533333223333  45667777654      248889988877 6554333221 1122233


Q ss_pred             EEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCc-eEECCCCCC--CCCCceEEE-ECCEEEEEccCCCCccCCCccce
Q 016328          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK-WQDLPPLPV--PRYAPATQL-WRGRLHVMGGSGENRYTPEVDHW  242 (391)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~--~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~  242 (391)
                      +.. ++++++.|+.+        ..+..||..+.+ |..+..+..  ...-.+++. -++++++.|+.++     .+..|
T Consensus       107 ~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iw  173 (377)
T 3dwl_C          107 RWSPNEDKFAVGSGA--------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR-----KAYVL  173 (377)
T ss_dssp             ECCTTSSCCEEEESS--------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS-----CEEEE
T ss_pred             EECCCCCEEEEEecC--------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC-----EEEEE
Confidence            332 56667777653        346677777654 433332222  111122222 2566777777543     35566


Q ss_pred             Ee
Q 016328          243 SL  244 (391)
Q Consensus       243 ~~  244 (391)
                      ++
T Consensus       174 d~  175 (377)
T 3dwl_C          174 SA  175 (377)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.71  E-value=0.48  Score=40.89  Aligned_cols=144  Identities=8%  Similarity=-0.073  Sum_probs=70.7

Q ss_pred             ceeEeeecCCCCe-eecCCCCCCCCceeeEeecC-ccccccccccccccccccc-CceEEccCCCCCccCceEE-EECCE
Q 016328           48 LNIASNWSPYHNS-IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPE-LKWEKMKAAPVPRLDGAAI-QIKNL  123 (391)
Q Consensus        48 ~~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~-~~W~~~~~~p~~r~~~~~~-~~~~~  123 (391)
                      -..+..||+.+++ ..+... ...-........+ .....  ....++.+|..+ .+...+...+....-..+. .-+++
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~   97 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQT-PELFEAPNWSPDGKYLLLN--SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA   97 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEE-SSCCEEEEECTTSSEEEEE--ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred             ceeEEEEeCCCCceeeeccC-CcceEeeEECCCCCEEEEE--cCCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence            3578889998887 333221 0011111111111 11111  123677888877 6666554333212212222 22555


Q ss_pred             EEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-C-CEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328          124 LYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-G-RYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       124 vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (391)
                      .+++++.....  ...++.+|..+.+-..+....   .  ...++.. + ..|++.++.++      ...++.+|..+..
T Consensus        98 ~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~---~--~~~~~~spdg~~l~~~~~~~~------~~~l~~~~~~~~~  164 (297)
T 2ojh_A           98 LYAISDKVEFG--KSAIYLLPSTGGTPRLMTKNL---P--SYWHGWSPDGKSFTYCGIRDQ------VFDIYSMDIDSGV  164 (297)
T ss_dssp             EEEEEECTTTS--SCEEEEEETTCCCCEECCSSS---S--EEEEEECTTSSEEEEEEEETT------EEEEEEEETTTCC
T ss_pred             EEEEEEeCCCC--cceEEEEECCCCceEEeecCC---C--ccceEECCCCCEEEEEECCCC------ceEEEEEECCCCc
Confidence            55555533222  345889998877755543222   1  2223332 3 45555554332      3467888888877


Q ss_pred             eEECCC
Q 016328          202 WQDLPP  207 (391)
Q Consensus       202 W~~~~~  207 (391)
                      ...+..
T Consensus       165 ~~~~~~  170 (297)
T 2ojh_A          165 ETRLTH  170 (297)
T ss_dssp             EEECCC
T ss_pred             ceEccc
Confidence            766654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=94.68  E-value=1.6  Score=39.66  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=13.4

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTD  147 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~  147 (391)
                      ++..++.||.+      ..+.+|+...
T Consensus       117 ~g~~lasg~~d------~~i~v~~~~~  137 (354)
T 2pbi_B          117 SGCAIACGGLD------NKCSVYPLTF  137 (354)
T ss_dssp             TSSEEEEESTT------SEEEEEECCC
T ss_pred             CCCEEEEeeCC------CCEEEEEEec
Confidence            55677778765      3466777654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.65  E-value=1.9  Score=36.93  Aligned_cols=119  Identities=13%  Similarity=-0.015  Sum_probs=59.3

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~  169 (391)
                      .+..+|+.+........... ..-.+++.. ++++||... +      ..+.+||+.++..........   ....++++
T Consensus        47 ~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~~~~~~~~~---~~p~~i~~  115 (270)
T 1rwi_B           47 RVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQTVLPFDGL---NYPEGLAV  115 (270)
T ss_dssp             EEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T------TEEEEECTTCSCCEECCCCSC---SSEEEEEE
T ss_pred             cEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C------CEEEEEeCCCceEeeeecCCc---CCCcceEE
Confidence            56677766654433321111 112333333 467888764 1      358899998876554422111   12334444


Q ss_pred             e-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEEcc
Q 016328          170 D-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG  229 (391)
Q Consensus       170 ~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG  229 (391)
                      . +++||+....        ...+.+||..+........... ..-..++.. +++||+...
T Consensus       116 ~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B          116 DTQGAVYVADRG--------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             CTTCCEEEEEGG--------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEG
T ss_pred             CCCCCEEEEECC--------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEEC
Confidence            4 6789987532        3567888877765544322111 111233333 577888753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.63  E-value=0.86  Score=42.42  Aligned_cols=143  Identities=8%  Similarity=-0.017  Sum_probs=65.0

Q ss_pred             CEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccCCCC
Q 016328           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      +.+++.|+.++     .+..||..+.+  ..+... ...-..+.....+ ....+. ....+..+|..+.+  .+..+..
T Consensus       120 ~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~~~l~sgs-~D~~i~iwd~~~~~--~~~~~~~  190 (410)
T 1vyh_C          120 FSVMVSASEDA-----TIKVWDYETGDFERTLKGH-TDSVQDISFDHSGKLLASCS-ADMTIKLWDFQGFE--CIRTMHG  190 (410)
T ss_dssp             SSEEEEEESSS-----CEEEEETTTCCCCEEECCC-SSCEEEEEECTTSSEEEEEE-TTSCCCEEETTSSC--EEECCCC
T ss_pred             CCEEEEEeCCC-----eEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc--eeEEEcC
Confidence            45667777666     56788888776  333321 0000111111111 111111 22345566655433  2222222


Q ss_pred             CccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCC
Q 016328          111 PRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRG  187 (391)
Q Consensus       111 ~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~  187 (391)
                      ....-.++.+  ++..++.|+.+      ..+.+||..+..-...  +... ...-..+.. .++.+++.|+.++     
T Consensus       191 h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~--~~~h-~~~v~~~~~~~~g~~l~s~s~D~-----  256 (410)
T 1vyh_C          191 HDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKT--FTGH-REWVRMVRPNQDGTLIASCSNDQ-----  256 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE--EECC-SSCEEEEEECTTSSEEEEEETTS-----
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEE--EeCC-CccEEEEEECCCCCEEEEEcCCC-----
Confidence            2222222222  45666777654      3588899887653321  1110 111112222 3566777777543     


Q ss_pred             CcceeEEEeCCCCce
Q 016328          188 PTAHTFVLDTETKKW  202 (391)
Q Consensus       188 ~~~~~~~yd~~~~~W  202 (391)
                         .+..||..+...
T Consensus       257 ---~v~vwd~~~~~~  268 (410)
T 1vyh_C          257 ---TVRVWVVATKEC  268 (410)
T ss_dssp             ---CEEEEETTTCCE
T ss_pred             ---eEEEEECCCCce
Confidence               456677766543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.57  E-value=1.4  Score=40.66  Aligned_cols=64  Identities=5%  Similarity=-0.033  Sum_probs=34.1

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++.+++.|+.+      ..+.+||..+.+-..  .+... ...-.+++.. ++..++.|+.+        ..+..||..+
T Consensus       150 ~~~~l~s~s~d------~~i~iwd~~~~~~~~--~~~~h-~~~v~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~  212 (420)
T 3vl1_A          150 SGEALISSSQD------MQLKIWSVKDGSNPR--TLIGH-RATVTDIAIIDRGRNVLSASLD--------GTIRLWECGT  212 (420)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTCCCCE--EEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEeCCCCcCce--EEcCC-CCcEEEEEEcCCCCEEEEEcCC--------CcEEEeECCC
Confidence            45666777654      358889987654221  11110 1112233333 55666677654        3467788876


Q ss_pred             Cc
Q 016328          200 KK  201 (391)
Q Consensus       200 ~~  201 (391)
                      .+
T Consensus       213 ~~  214 (420)
T 3vl1_A          213 GT  214 (420)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.56  E-value=2.5  Score=38.01  Aligned_cols=199  Identities=12%  Similarity=0.148  Sum_probs=100.2

Q ss_pred             ccccccccCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCC-CCCCCcceEEEEE
Q 016328           92 FQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVT  169 (391)
Q Consensus        92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~~~r~~~~~~~  169 (391)
                      +++-.....+|+.+. .|....-.++... .+.+|++|- .      ..+++-+-...+|+.+... +.+ .....+++.
T Consensus        17 ~~~s~d~g~~W~~~~-~~~~~~~~~v~~~~~~~~~~~G~-~------g~i~~s~DgG~tW~~~~~~~~~~-~~~~~~i~~   87 (327)
T 2xbg_A           17 SAIPALDYNPWEAIQ-LPTTATILDMSFIDRHHGWLVGV-N------ATLMETRDGGQTWEPRTLVLDHS-DYRFNSVSF   87 (327)
T ss_dssp             -CCCBCSSCCEEEEE-CSCSSCEEEEEESSSSCEEEEET-T------TEEEEESSTTSSCEECCCCCSCC-CCEEEEEEE
T ss_pred             eeecCCCCCCceEee-cCCCCcEEEEEECCCCcEEEEcC-C------CeEEEeCCCCCCCeECCCCCCCC-CccEEEEEe
Confidence            333344556898876 3333333333333 457888653 1      1244443345689997532 121 122345555


Q ss_pred             eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCC-CCCCCceEE-EECCEEEEEccCCCCccCCCccceEeeee
Q 016328          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (391)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  247 (391)
                      .++.+|++|-         ...+++-+-.-.+|+.+.... .+-....++ .-++.+|+.|...        ..|..   
T Consensus        88 ~~~~~~~~g~---------~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g--------~v~~S---  147 (327)
T 2xbg_A           88 QGNEGWIVGE---------PPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVG--------AIYRT---  147 (327)
T ss_dssp             ETTEEEEEEE---------TTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTC--------CEEEE---
T ss_pred             cCCeEEEEEC---------CCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCc--------cEEEE---
Confidence            6788998752         124555444467999987431 222223333 3467888877421        12211   


Q ss_pred             cCCcccCCceeecCCCCCCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-C-cCcEEEcCC
Q 016328          248 DGKPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D-EMKWKVLPS  324 (391)
Q Consensus       248 ~~d~~~~~W~~~~~~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~-~~~W~~v~~  324 (391)
                        +....+|+.+........ +.++.. +++++++|-. +                      .+|.-+ . ..+|+.+..
T Consensus       148 --~DgG~tW~~~~~~~~~~~-~~~~~~~~~~~~~~g~~-G----------------------~~~~S~d~gG~tW~~~~~  201 (327)
T 2xbg_A          148 --KDSGKNWQALVQEAIGVM-RNLNRSPSGEYVAVSSR-G----------------------SFYSTWEPGQTAWEPHNR  201 (327)
T ss_dssp             --SSTTSSEEEEECSCCCCE-EEEEECTTSCEEEEETT-S----------------------SEEEEECTTCSSCEEEEC
T ss_pred             --cCCCCCCEEeecCCCcce-EEEEEcCCCcEEEEECC-C----------------------cEEEEeCCCCCceeECCC
Confidence              134667887754322222 233333 5566666532 1                      256553 3 689999853


Q ss_pred             CCCCCCCceeeEE-EECCEEEEEcc
Q 016328          325 MPKPDSHIEFAWV-LVNNSIVIVGG  348 (391)
Q Consensus       325 ~~~~~~~~~~~~~-~~~~~l~i~GG  348 (391)
                       +.+...  ..++ ..++++|+++.
T Consensus       202 -~~~~~~--~~~~~~~~g~~~~~~~  223 (327)
T 2xbg_A          202 -TTSRRL--HNMGFTPDGRLWMIVN  223 (327)
T ss_dssp             -CSSSCE--EEEEECTTSCEEEEET
T ss_pred             -CCCCcc--ceeEECCCCCEEEEeC
Confidence             222221  2222 24567877653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.55  E-value=0.47  Score=42.06  Aligned_cols=95  Identities=12%  Similarity=0.077  Sum_probs=47.1

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      +++.+++|+.+      ..+.+||..+.+......+... ...-.+++.. ++++++.|+.+        ..+..||..+
T Consensus       108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSD--------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCCcceeeecccC-CCceEEEEECCCCCEEEEEeCC--------CcEEEEeCCC
Confidence            45666666643      3588999988875443333221 1112233332 55666676643        3577899887


Q ss_pred             CceEECCCCCCCCCCceEEE-ECCEEEEEccCC
Q 016328          200 KKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSG  231 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~  231 (391)
                      .+....-.... ....+++. -+++.++.|+.+
T Consensus       173 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          173 QTLVRQFQGHT-DGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             TEEEEEECCCS-SCEEEEEECTTSSEEEEEETT
T ss_pred             Cceeeeeeccc-CceEEEEECCCCCEEEEEecC
Confidence            65332211111 11122222 255666676643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.52  E-value=2  Score=38.27  Aligned_cols=72  Identities=7%  Similarity=-0.077  Sum_probs=39.6

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++.+|+.............+.++|+.+.+-...-+...  .-...+....++.+|+.+..        ...+..||+.+.
T Consensus        52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~--------~~~v~~~d~~~~  121 (353)
T 3vgz_A           52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTV--------NSAVTAIDAKTG  121 (353)
T ss_dssp             TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETT--------TTEEEEEETTTC
T ss_pred             CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecC--------CCEEEEEeCCCC
Confidence            34788766432211113569999998876443222221  11112222234568887653        357889999887


Q ss_pred             ce
Q 016328          201 KW  202 (391)
Q Consensus       201 ~W  202 (391)
                      +-
T Consensus       122 ~~  123 (353)
T 3vgz_A          122 EV  123 (353)
T ss_dssp             CE
T ss_pred             ee
Confidence            64

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.52  E-value=2  Score=37.83  Aligned_cols=64  Identities=8%  Similarity=0.045  Sum_probs=36.4

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      +++.++.|+.++      .+.+||..+.+....-.-..   ..-.+++. -++++++.|+.+        ..+..||..+
T Consensus        34 ~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d--------~~i~vwd~~~   96 (312)
T 4ery_A           34 NGEWLASSSADK------LIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSNLLVSASDD--------KTLKIWDVSS   96 (312)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEeeCCC------eEEEEeCCCcccchhhccCC---CceEEEEEcCCCCEEEEECCC--------CEEEEEECCC
Confidence            456666776542      37788888777655321111   11223333 256677777653        4577888877


Q ss_pred             Cc
Q 016328          200 KK  201 (391)
Q Consensus       200 ~~  201 (391)
                      .+
T Consensus        97 ~~   98 (312)
T 4ery_A           97 GK   98 (312)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=94.46  E-value=0.53  Score=42.16  Aligned_cols=103  Identities=5%  Similarity=-0.072  Sum_probs=51.9

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEE-----eCCEEEEEeCccCCCCCCCcceeE
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVT-----DGRYIYVVTGQYGPQCRGPTAHTF  193 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~-----~~~~iyv~GG~~~~~~~~~~~~~~  193 (391)
                      ++..++.|+.+      ..+.+||+.+.+  ...+........+...+++.     .++.+++.|+.+        ..+.
T Consensus       128 ~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--------~~i~  193 (357)
T 3i2n_A          128 GAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN--------GDIK  193 (357)
T ss_dssp             CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT--------SEEE
T ss_pred             CccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC--------CeEE
Confidence            45566777654      248889988764  33332222211122233331     466677777642        4678


Q ss_pred             EEeCCCCceEECCCCCCCCCCceEEEE----CCEEEEEccCCCCccCCCccceEe
Q 016328          194 VLDTETKKWQDLPPLPVPRYAPATQLW----RGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       194 ~yd~~~~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      .||..+.+-......  .....+++..    ++..++.|+.++     .+..|++
T Consensus       194 i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~  241 (357)
T 3i2n_A          194 LFDLRNMALRWETNI--KNGVCSLEFDRKDISMNKLVATSLEG-----KFHVFDM  241 (357)
T ss_dssp             EEETTTTEEEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTT-----EEEEEEE
T ss_pred             EEECccCceeeecCC--CCceEEEEcCCCCCCCCEEEEECCCC-----eEEEEeC
Confidence            899887653222111  1222233333    566777776543     3555664

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=94.46  E-value=0.75  Score=43.03  Aligned_cols=101  Identities=7%  Similarity=-0.027  Sum_probs=53.9

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE-CC-EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV  168 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~  168 (391)
                      .++.+|..+.+...+...+.  ...+.+.- ++ +|++.+..++    ...++.+|+.+.+...+...+.    .....+
T Consensus       204 ~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~~----~~~~~~  273 (415)
T 2hqs_A          204 ALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS----NNTEPT  273 (415)
T ss_dssp             EEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCSS----CEEEEE
T ss_pred             EEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCCC----cccceE
Confidence            67788887777665543322  11222222 44 4554554332    2359999999888766543322    112233


Q ss_pred             E-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC
Q 016328          169 T-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP  206 (391)
Q Consensus       169 ~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~  206 (391)
                      . -+++.+++++... +    ...++.+|..+.+-+.+.
T Consensus       274 ~spdg~~l~~~s~~~-g----~~~i~~~d~~~~~~~~l~  307 (415)
T 2hqs_A          274 WFPDSQNLAFTSDQA-G----RPQVYKVNINGGAPQRIT  307 (415)
T ss_dssp             ECTTSSEEEEEECTT-S----SCEEEEEETTSSCCEECC
T ss_pred             ECCCCCEEEEEECCC-C----CcEEEEEECCCCCEEEEe
Confidence            3 2454444443211 1    457899999887655543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=94.38  E-value=0.92  Score=42.49  Aligned_cols=145  Identities=7%  Similarity=-0.054  Sum_probs=67.2

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCC-ceeeEe-ecC-cccccccccccccccccccCceEEccC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKG-ENIGVK-TKK-DVVPKRILPATFQDLPAPELKWEKMKA  107 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~-~g~~~~-~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~  107 (391)
                      ++.+.+.|+.++     .+..||..+.+  ..+....+... .++... ..+ ....+. ....+..+|..++....+..
T Consensus       131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~  204 (435)
T 4e54_B          131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-MEGTTRLQDFKGNILRVFAS  204 (435)
T ss_dssp             CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-SSSCEEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-CCCEEEEeeccCCceeEEec
Confidence            456777887776     57788887765  22222111111 112111 011 111111 22345566766554433322


Q ss_pred             CCCCc-cCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCC
Q 016328          108 APVPR-LDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGP  183 (391)
Q Consensus       108 ~p~~r-~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~  183 (391)
                      ..... ...++... ++.+++.|+.+      ..+.++|...+.-..   +... ...-.+++..  +..+++.|+.++ 
T Consensus       205 ~~~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~---~~~h-~~~v~~v~~~p~~~~~~~s~s~d~-  273 (435)
T 4e54_B          205 SDTINIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWN---LRMH-KKKVTHVALNPCCDWFLATASVDQ-  273 (435)
T ss_dssp             CSSCSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCC---SBCC-SSCEEEEEECTTCSSEEEEEETTS-
T ss_pred             cCCCCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEE---Eecc-cceEEeeeecCCCceEEEEecCcc-
Confidence            22111 12223322 56777777754      347888987643222   2211 1111233332  345777777544 


Q ss_pred             CCCCCcceeEEEeCCCCc
Q 016328          184 QCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       184 ~~~~~~~~~~~yd~~~~~  201 (391)
                             .+..||..+.+
T Consensus       274 -------~v~iwd~~~~~  284 (435)
T 4e54_B          274 -------TVKIWDLRQVR  284 (435)
T ss_dssp             -------BCCEEETTTCC
T ss_pred             -------eeeEEeccccc
Confidence                   34567876543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.34  E-value=2.5  Score=38.61  Aligned_cols=98  Identities=8%  Similarity=0.028  Sum_probs=48.1

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCC---CcceEEEEEe-C-CEEEEEeCccCCCCCCCcceeEEEe
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM---AHSHLGMVTD-G-RYIYVVTGQYGPQCRGPTAHTFVLD  196 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~---~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~yd  196 (391)
                      +.+++.|+.+      ..+.+||..+.+-...-..+.+.   ...-.+++.. + ..+++.|+.++.     ...+..||
T Consensus       178 ~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----~~~i~~~d  246 (416)
T 2pm9_A          178 AHVFASAGSS------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-----DPSILIWD  246 (416)
T ss_dssp             TTEEEEESSS------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-----SCCCCEEE
T ss_pred             CcEEEEEcCC------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-----CceEEEEe
Confidence            5677777754      34889999887654422222100   1112233333 2 357777765431     12567889


Q ss_pred             CCCCceEECCCCC--CCCCCceEEEE--CCEEEEEccCC
Q 016328          197 TETKKWQDLPPLP--VPRYAPATQLW--RGRLHVMGGSG  231 (391)
Q Consensus       197 ~~~~~W~~~~~~~--~~r~~~~~~~~--~~~iyv~GG~~  231 (391)
                      ..+.. ..+..+.  ....-.+++..  ++++++.|+.+
T Consensus       247 ~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          247 LRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD  284 (416)
T ss_dssp             TTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred             CCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCC
Confidence            87643 1111222  11111222222  56777777754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=94.13  E-value=2.6  Score=40.83  Aligned_cols=26  Identities=15%  Similarity=0.074  Sum_probs=15.9

Q ss_pred             EEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          337 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       337 ~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      ...++..++.|+.++            .+..||..+.+
T Consensus       305 ~~~~~~~l~~~~~~g------------~i~~~d~~~~~  330 (615)
T 1pgu_A          305 VATGNGRIISLSLDG------------TLNFYELGHDE  330 (615)
T ss_dssp             EEEETTEEEEEETTS------------CEEEEETTEEE
T ss_pred             EeCCCCeEEEEECCC------------CEEEEECCCCc
Confidence            334677777777653            46667766544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.05  E-value=3.6  Score=37.89  Aligned_cols=95  Identities=12%  Similarity=0.083  Sum_probs=51.8

Q ss_pred             CceEEccCCCCCccCceEEEE---CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCC---CCCCCc-------ceEE
Q 016328          100 LKWEKMKAAPVPRLDGAAIQI---KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM---PREMAH-------SHLG  166 (391)
Q Consensus       100 ~~W~~~~~~p~~r~~~~~~~~---~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~~~r-------~~~~  166 (391)
                      .+|+...+.+....-++++..   .+.||+.+.....   -.-+++.+-...+|+.+...   +....+       .-.+
T Consensus        43 ~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~  119 (394)
T 3b7f_A           43 RTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFW  119 (394)
T ss_dssp             CSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEE
T ss_pred             CCceECCccCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCcccccccccccceeE
Confidence            589876422221222333333   4578886532111   12477777778899987532   211111       1123


Q ss_pred             EEEe----CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC
Q 016328          167 MVTD----GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP  206 (391)
Q Consensus       167 ~~~~----~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~  206 (391)
                      ++..    .+.||+.+-         ...+++.+-...+|+.+.
T Consensus       120 l~~~~~~~~~~l~~g~~---------~ggl~~S~DgG~tW~~~~  154 (394)
T 3b7f_A          120 LTPGHASEPGTWYAGTS---------PQGLFRSTDHGASWEPVA  154 (394)
T ss_dssp             EEECCTTSTTCEEEEEE---------TTEEEEESSTTSBCEECH
T ss_pred             EEeCCCCCCCEEEEEec---------CCcEEEEcCCCCCeEECc
Confidence            4443    577887542         245788888889999885

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.00  E-value=3.3  Score=37.19  Aligned_cols=196  Identities=13%  Similarity=0.092  Sum_probs=97.1

Q ss_pred             ccCceEEccCC-CCCc-cCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC-CCCCcceEEEE-EeCCE
Q 016328           98 PELKWEKMKAA-PVPR-LDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHLGMV-TDGRY  173 (391)
Q Consensus        98 ~~~~W~~~~~~-p~~r-~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~~~r~~~~~~-~~~~~  173 (391)
                      ...+|+.+... +.+. ...++...++.+|++|-.       ..+++-+-.-.+|+.+.... .| .. ...++ .-++.
T Consensus        64 gG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~-~~-~~~i~~~~~~~  134 (327)
T 2xbg_A           64 GGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLP-GS-PRLIKALGNGS  134 (327)
T ss_dssp             TTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCS-SC-EEEEEEEETTE
T ss_pred             CCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCC-CC-eEEEEEECCCC
Confidence            34589987532 2222 233444456788887521       12444333357899976432 11 11 23333 45788


Q ss_pred             EEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcc
Q 016328          174 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL  252 (391)
Q Consensus       174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~  252 (391)
                      +|+.|..         ..+++-+-.-.+|+.+.... +...+.++.. ++++|++|- .+       ..|...    |..
T Consensus       135 ~~~~~~~---------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~G-------~~~~S~----d~g  192 (327)
T 2xbg_A          135 AEMITNV---------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSS-RG-------SFYSTW----EPG  192 (327)
T ss_dssp             EEEEETT---------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEET-TS-------SEEEEE----CTT
T ss_pred             EEEEeCC---------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEEC-CC-------cEEEEe----CCC
Confidence            8887741         23455544567899886422 2233344433 456666652 21       112211    222


Q ss_pred             cCCceeecCCCCCCcceeEEE-ECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEE-c-CcCcEEEcCCCCCCC
Q 016328          253 EKEWRTEIPIPRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-D-DEMKWKVLPSMPKPD  329 (391)
Q Consensus       253 ~~~W~~~~~~p~~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d-~~~~W~~v~~~~~~~  329 (391)
                      ...|+.+....... ...++. -++.+|+.+.. +                      .++.. + ...+|+.+...+.+.
T Consensus       193 G~tW~~~~~~~~~~-~~~~~~~~~g~~~~~~~~-G----------------------~~~~s~~D~G~tW~~~~~~~~~~  248 (327)
T 2xbg_A          193 QTAWEPHNRTTSRR-LHNMGFTPDGRLWMIVNG-G----------------------KIAFSDPDNSENWGELLSPLRRN  248 (327)
T ss_dssp             CSSCEEEECCSSSC-EEEEEECTTSCEEEEETT-T----------------------EEEEEETTEEEEECCCBCTTSSC
T ss_pred             CCceeECCCCCCCc-cceeEECCCCCEEEEeCC-c----------------------eEEEecCCCCCeeEeccCCcccC
Confidence            57888774322222 223332 35678877642 1                      14554 2 367898875321122


Q ss_pred             CCceeeEEEE-CCEEEEEcc
Q 016328          330 SHIEFAWVLV-NNSIVIVGG  348 (391)
Q Consensus       330 ~~~~~~~~~~-~~~l~i~GG  348 (391)
                      ...-.+++.. ++.+|++|+
T Consensus       249 ~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          249 SVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             CSCEEEEEESSSSCEEEEES
T ss_pred             CcceEEEEecCCCEEEEEeC
Confidence            1111222222 578888876

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.91  E-value=0.58  Score=42.01  Aligned_cols=23  Identities=26%  Similarity=0.210  Sum_probs=15.8

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      ++.+++.|+.++     .+..||..+.+
T Consensus        43 ~~~~l~~~~~dg-----~i~vwd~~~~~   65 (369)
T 3zwl_B           43 EGDLLFSCSKDS-----SASVWYSLNGE   65 (369)
T ss_dssp             TSCEEEEEESSS-----CEEEEETTTCC
T ss_pred             CCCEEEEEeCCC-----EEEEEeCCCch
Confidence            455666676555     56788887776

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=93.91  E-value=3.5  Score=37.12  Aligned_cols=56  Identities=13%  Similarity=0.051  Sum_probs=28.4

Q ss_pred             EEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCcccc
Q 016328          310 VYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVS  375 (391)
Q Consensus       310 v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~  375 (391)
                      +|.++ .+.+++.+..++... .....+...+++.+++++.....         ..+|.+|+++...
T Consensus       286 v~~~~~~~g~~~~~~~~~~g~-~~~~~~~spdg~~l~~~~~~~~~---------v~v~~~d~~~g~~  342 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLTGI-HPRNFIITPNGKYLLVACRDTNV---------IQIFERDQATGLL  342 (361)
T ss_dssp             EEEECTTTCCEEEEEEEECSS-CCCEEEECTTSCEEEEEETTTTE---------EEEEEECTTTCCE
T ss_pred             EEEEcCCCCcEEEeeEecCCC-CCceEEECCCCCEEEEEECCCCC---------EEEEEEECCCCcE
Confidence            56665 567777665544311 11122233466655555433221         2577788766653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=93.87  E-value=5.2  Score=39.85  Aligned_cols=64  Identities=16%  Similarity=0.018  Sum_probs=35.1

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCCC-ceEEC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETK-KWQDL  205 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~-~W~~~  205 (391)
                      ..++++|+.+.+-..+...... ...-..++. -+++.++++..+...   ....++.+|+.+. ..+.+
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPK-EKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCT-TCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEEECCCCceEeeccCCCC-ceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECCCCceeeEE
Confidence            5699999988876555322111 122222333 255444444333222   2468999999987 66554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.75  E-value=1.7  Score=38.40  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=34.2

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCC-CCeeeCC--CCCCCCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeEEEe
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTD-NTWGGRF--DMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLD  196 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~--~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (391)
                      +.+|+.+..+      ..+.+||+.+ .+.....  ....+.......++..  +..+|+.+..        ...+..||
T Consensus       141 ~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~--------~~~i~~~~  206 (343)
T 1ri6_A          141 RTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--------NSSVDVWE  206 (343)
T ss_dssp             SEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT--------TTEEEEEE
T ss_pred             CEEEEecCCC------CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC--------CCEEEEEE
Confidence            4677765322      3588999887 6665322  1111101111223332  3457777532        35677888


Q ss_pred             CC--CCceE
Q 016328          197 TE--TKKWQ  203 (391)
Q Consensus       197 ~~--~~~W~  203 (391)
                      ..  +.+++
T Consensus       207 ~~~~~g~~~  215 (343)
T 1ri6_A          207 LKDPHGNIE  215 (343)
T ss_dssp             SSCTTSCCE
T ss_pred             ecCCCCcEE
Confidence            74  34443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.73  E-value=1.6  Score=39.82  Aligned_cols=52  Identities=12%  Similarity=-0.084  Sum_probs=26.7

Q ss_pred             ccccccccccCc------eEEccCCCCC---ccCceEEEE-----CCEE-EEEeccCCCCCCcceeEEEECCC
Q 016328           90 ATFQDLPAPELK------WEKMKAAPVP---RLDGAAIQI-----KNLL-YVFAGYGSIDYVHSHVDIYNFTD  147 (391)
Q Consensus        90 ~~~~~~d~~~~~------W~~~~~~p~~---r~~~~~~~~-----~~~v-yv~GG~~~~~~~~~~~~~yd~~~  147 (391)
                      ..+..||..+.+      +..+...+..   ..-.++...     ++.. ++.|+.+      ..+.+||..+
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~  157 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK------GTTYIWKFHP  157 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT------SCEEEEEEES
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC------CcEEEEeCCc
Confidence            356677776665      5555443311   112223333     3455 7777654      2377777765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=93.61  E-value=3.7  Score=37.98  Aligned_cols=95  Identities=9%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             cccccccccccCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEE
Q 016328           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (391)
Q Consensus        89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~  166 (391)
                      ...+..+|..+.+...+-.+..+...-.++.+  ++..++.|+.+      ..+.+||..+.+-...  +..  ......
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D------g~v~iWd~~~~~~~~~--~~~--h~~~v~  193 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRN--MTS--HSARVG  193 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEE--ECC--CSSCEE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC------CeEEEEEcCCCcEEEE--EeC--CCCceE
Confidence            44677778877766554444333222222333  56777777764      3488899887654332  222  111223


Q ss_pred             EEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328          167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (391)
                      ....++.+++.|+.+        ..+..+|.....
T Consensus       194 ~~s~~~~~l~sgs~d--------~~i~~~d~~~~~  220 (420)
T 4gga_A          194 SLSWNSYILSSGSRS--------GHIHHHDVRVAE  220 (420)
T ss_dssp             EEEEETTEEEEEETT--------SEEEEEETTSSS
T ss_pred             EEeeCCCEEEEEeCC--------CceeEeeecccc
Confidence            344566677777653        345667765543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.61  E-value=1  Score=40.38  Aligned_cols=63  Identities=6%  Similarity=-0.088  Sum_probs=37.6

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE---eCCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT---DGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      ++..++.|+.+      ..+.+||..+.+-........    .-.+++.   .++.+++.|+.+        ..+..||.
T Consensus        97 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~  158 (368)
T 3mmy_A           97 DGSKVFTASCD------KTAKMWDLSSNQAIQIAQHDA----PVKTIHWIKAPNYSCVMTGSWD--------KTLKFWDT  158 (368)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEECSS----CEEEEEEEECSSCEEEEEEETT--------SEEEEECS
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCCceeeccccC----ceEEEEEEeCCCCCEEEEccCC--------CcEEEEEC
Confidence            45566666654      358899998887655322221    1223333   366777777753        45778888


Q ss_pred             CCCc
Q 016328          198 ETKK  201 (391)
Q Consensus       198 ~~~~  201 (391)
                      .+.+
T Consensus       159 ~~~~  162 (368)
T 3mmy_A          159 RSSN  162 (368)
T ss_dssp             SCSS
T ss_pred             CCCc
Confidence            7654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.59  E-value=0.79  Score=41.10  Aligned_cols=66  Identities=9%  Similarity=-0.007  Sum_probs=36.4

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++++++.|+.+      ..+.+||..+.+-...  +... ...-.+++.. +++.++.|+.+        ..+..||..+
T Consensus        43 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~h-~~~v~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~  105 (369)
T 3zwl_B           43 EGDLLFSCSKD------SSASVWYSLNGERLGT--LDGH-TGTIWSIDVDCFTKYCVTGSAD--------YSIKLWDVSN  105 (369)
T ss_dssp             TSCEEEEEESS------SCEEEEETTTCCEEEE--ECCC-SSCEEEEEECTTSSEEEEEETT--------TEEEEEETTT
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCchhhhh--hhhc-CCcEEEEEEcCCCCEEEEEeCC--------CeEEEEECCC
Confidence            45666677654      2488899877654332  2211 1112233333 45666676643        4577889887


Q ss_pred             CceE
Q 016328          200 KKWQ  203 (391)
Q Consensus       200 ~~W~  203 (391)
                      .+-.
T Consensus       106 ~~~~  109 (369)
T 3zwl_B          106 GQCV  109 (369)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            6543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=93.53  E-value=2  Score=39.07  Aligned_cols=23  Identities=9%  Similarity=-0.005  Sum_probs=15.9

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      ++.+++.|+.++     .+..||..+..
T Consensus        55 ~~~~l~~~~~dg-----~i~iw~~~~~~   77 (408)
T 4a11_B           55 EGRYMLSGGSDG-----VIVLYDLENSS   77 (408)
T ss_dssp             TCCEEEEEETTS-----CEEEEECCCCS
T ss_pred             CCCEEEEEcCCC-----eEEEEECCCCc
Confidence            566777777665     56778887765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=93.52  E-value=3.7  Score=36.24  Aligned_cols=124  Identities=4%  Similarity=-0.087  Sum_probs=58.6

Q ss_pred             cccccccc-ccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC-------eeeCCCCCCCCC
Q 016328           90 ATFQDLPA-PELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT-------WGGRFDMPREMA  161 (391)
Q Consensus        90 ~~~~~~d~-~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~~~  161 (391)
                      ..+..+|. .+.+-..+...+....-.++....+..++.|+.+      ..+.+||+.+..       .+.+..+..  .
T Consensus        79 g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~  150 (342)
T 1yfq_A           79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGDGVIAVKNLNSNNTKV--K  150 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTTBCEEEEESCSSSSSS--C
T ss_pred             CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccccccccccccCCeeeEEee--C
Confidence            36777777 6665554443111111122222225556666654      347788876400       222333332  2


Q ss_pred             cceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCC-Cc--eEECCCCCCCCCCceEEEE--CCEEEEEccCC
Q 016328          162 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET-KK--WQDLPPLPVPRYAPATQLW--RGRLHVMGGSG  231 (391)
Q Consensus       162 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~-~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  231 (391)
                      ..-.+++...+. ++.|+.        ...+..||..+ ..  ...... +....-.+++..  ++++++.|+.+
T Consensus       151 ~~v~~~~~~~~~-l~~~~~--------d~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          151 NKIFTMDTNSSR-LIVGMN--------NSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             CCEEEEEECSSE-EEEEES--------TTEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             CceEEEEecCCc-EEEEeC--------CCeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecC
Confidence            233455556666 555543        34678899877 32  221111 111112223333  46777777654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=93.52  E-value=3.4  Score=40.21  Aligned_cols=198  Identities=11%  Similarity=0.108  Sum_probs=89.9

Q ss_pred             cCEEEEecCCCCcccceeEeeecC--CCCe--eecCCCCCCCCceeeEee----cC-cccccccccccccccccccCceE
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSP--YHNS--IILPNNGPQKGENIGVKT----KK-DVVPKRILPATFQDLPAPELKWE  103 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~--~~~~--~~lp~~~~r~~~g~~~~~----~~-~~~~~~~~~~~~~~~d~~~~~W~  103 (391)
                      +.+||+.+. +     +.+..||+  .+.+  ..++.  .....+++..-    .+ ........+..+..+|..+.+-.
T Consensus       190 g~~l~v~~~-d-----~~V~v~D~~~~t~~~~~~i~~--g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~  261 (543)
T 1nir_A          190 GRYLLVIGR-D-----ARIDMIDLWAKEPTKVAEIKI--GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  261 (543)
T ss_dssp             SCEEEEEET-T-----SEEEEEETTSSSCEEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             CCEEEEECC-C-----CeEEEEECcCCCCcEEEEEec--CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc
Confidence            345666653 2     47888998  6766  44443  11112333221    12 22233334456667776665432


Q ss_pred             E-ccC--C--------CCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-e
Q 016328          104 K-MKA--A--------PVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-D  170 (391)
Q Consensus       104 ~-~~~--~--------p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~  170 (391)
                      + ++.  +        |.+|....+..- +..+|+....      ...+.++|..+.+-..+..++.  .+.-+.++. -
T Consensus       262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~i~~--~~~~~~~~~sp  333 (543)
T 1nir_A          262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIGA--APFLHDGGWDS  333 (543)
T ss_dssp             EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEEEEC--CSSCCCEEECT
T ss_pred             eeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEEecc--CcCccCceECC
Confidence            2 111  1        112222222222 3455555422      2458889887653211111111  122222333 2


Q ss_pred             C-CEEEEEeCccCCCCCCCcceeEEEeCCCCceEEC---CCCCCCCCCceEEEE-CCEEEEEccCCCCccCCCccceEee
Q 016328          171 G-RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLA  245 (391)
Q Consensus       171 ~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~  245 (391)
                      + .++|+.+..        .+.+..+|.++.+-...   ...|.+-.......- ++.+|+.+...+    ..+..|+. 
T Consensus       334 dg~~l~va~~~--------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d----~~V~v~d~-  400 (543)
T 1nir_A          334 SHRYFMTAANN--------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD----GSISLIGT-  400 (543)
T ss_dssp             TSCEEEEEEGG--------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS----SEEEEEEC-
T ss_pred             CCCEEEEEecC--------CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC----ceEEEEEe-
Confidence            3 456665432        46778899998764332   233333222222221 367888764321    23445543 


Q ss_pred             eecCCcc---cCCceeecCCC
Q 016328          246 VKDGKPL---EKEWRTEIPIP  263 (391)
Q Consensus       246 ~~~~d~~---~~~W~~~~~~p  263 (391)
                          ++.   ...|+.+..++
T Consensus       401 ----~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          401 ----DPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             ----CTTTCTTTBTSEEEEEE
T ss_pred             ----CCCCCchhcCeEEEEEE
Confidence                231   12387765554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.43  E-value=1.1  Score=40.90  Aligned_cols=141  Identities=6%  Similarity=-0.109  Sum_probs=64.7

Q ss_pred             EEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCC-ceeeEee-c-CcccccccccccccccccccCceEEccCCC
Q 016328           35 FFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKG-ENIGVKT-K-KDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (391)
Q Consensus        35 ~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~-~g~~~~~-~-~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p  109 (391)
                      .+++.|+.++     .+..||..+.+  ..+........ ..+.... . .....+ .....+..+|........+....
T Consensus        87 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~  160 (383)
T 3ei3_B           87 TTVAVGSKGG-----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS-SIRGATTLRDFSGSVIQVFAKTD  160 (383)
T ss_dssp             TEEEEEEBTS-----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE-ETTTEEEEEETTSCEEEEEECCC
T ss_pred             CEEEEEcCCC-----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE-eCCCEEEEEECCCCceEEEeccC
Confidence            4666676555     57788888766  22221111111 1222211 1 111111 12235566666655444443222


Q ss_pred             CCccC-ceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCE-EEEEeCccCCCC
Q 016328          110 VPRLD-GAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRY-IYVVTGQYGPQC  185 (391)
Q Consensus       110 ~~r~~-~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~  185 (391)
                      ..... .+++.. ++..++.|+.+      ..+.+||+....-..+....    ..-.+++.. ++. +++.|+.+    
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~d----  226 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHK----AKVTHAEFNPRCDWLMATSSVD----  226 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSS----SCEEEEEECSSCTTEEEEEETT----
T ss_pred             CCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCC----CcEEEEEECCCCCCEEEEEeCC----
Confidence            11111 222222 45666777654      35888998544333322111    112233333 333 77777653    


Q ss_pred             CCCcceeEEEeCCC
Q 016328          186 RGPTAHTFVLDTET  199 (391)
Q Consensus       186 ~~~~~~~~~yd~~~  199 (391)
                          ..+..||..+
T Consensus       227 ----~~i~iwd~~~  236 (383)
T 3ei3_B          227 ----ATVKLWDLRN  236 (383)
T ss_dssp             ----SEEEEEEGGG
T ss_pred             ----CEEEEEeCCC
Confidence                4567788776

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.38  E-value=3.1  Score=37.77  Aligned_cols=107  Identities=7%  Similarity=-0.052  Sum_probs=54.2

Q ss_pred             EECCEEEEEeccCCCCCCcceeEEEECCCCC----eeeCCCCCCCCCcceEEEEE-eC----C---EEEEEeCccCCCCC
Q 016328          119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT----WGGRFDMPREMAHSHLGMVT-DG----R---YIYVVTGQYGPQCR  186 (391)
Q Consensus       119 ~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~~~r~~~~~~~-~~----~---~iyv~GG~~~~~~~  186 (391)
                      .+...+++.|+.+      ..+.+||..+.+    +..+..+... ...-.+++. -+    +   .+++.|+.+     
T Consensus        23 ~~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~l~s~~~d-----   90 (397)
T 1sq9_A           23 SACNSFTVSCSGD------GYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELCLVATTSFS-----   90 (397)
T ss_dssp             EECSSEEEEEETT------SEEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEEEEEEEETT-----
T ss_pred             EecCCeEEEEcCC------CEEEEEECCCcccccCCCcceEEecC-CCcEEEEEEecccccCCccccEEEEEcCC-----
Confidence            3344667777654      358888888776    3222222111 111123333 23    5   777777754     


Q ss_pred             CCcceeEEEeCCCCc------eEECCCCCCC---CCCceEEEE-----CCEE-EEEccCCCCccCCCccceEee
Q 016328          187 GPTAHTFVLDTETKK------WQDLPPLPVP---RYAPATQLW-----RGRL-HVMGGSGENRYTPEVDHWSLA  245 (391)
Q Consensus       187 ~~~~~~~~yd~~~~~------W~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~~~~~~~~  245 (391)
                         ..+..||..+..      +..+...+..   ..-.+++..     ++.. ++.|+.++     .+..|++.
T Consensus        91 ---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~  156 (397)
T 1sq9_A           91 ---GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-----TTYIWKFH  156 (397)
T ss_dssp             ---SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS-----CEEEEEEE
T ss_pred             ---CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC-----cEEEEeCC
Confidence               346677777665      6665543211   222233333     4556 77776543     35667653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.32  E-value=1.3  Score=39.04  Aligned_cols=23  Identities=4%  Similarity=-0.029  Sum_probs=16.5

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      ++.+.+.|+.++     .+..||.++..
T Consensus        24 ~~~~l~s~~~dg-----~v~lWd~~~~~   46 (304)
T 2ynn_A           24 TEPWVLTTLYSG-----RVELWNYETQV   46 (304)
T ss_dssp             SSSEEEEEETTS-----EEEEEETTTTE
T ss_pred             CCCEEEEEcCCC-----cEEEEECCCCc
Confidence            455666777665     67889988876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=93.28  E-value=1.3  Score=47.75  Aligned_cols=93  Identities=9%  Similarity=-0.063  Sum_probs=46.5

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++..+++|+.+      ..+.+||..+.+......-..  .........-+++.++.|+.+        ..+..||..+.
T Consensus       972 ~g~~l~~g~~~------g~i~i~d~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~d--------g~i~vwd~~~~ 1035 (1249)
T 3sfz_A          972 HLEYVAFGDED------GAIKIIELPNNRVFSSGVGHK--KAVRHIQFTADGKTLISSSED--------SVIQVWNWQTG 1035 (1249)
T ss_dssp             TSSEEEEEETT------SCCEEEETTTTSCEEECCCCS--SCCCCEEECSSSSCEEEECSS--------SBEEEEETTTT
T ss_pred             CCCEEEEEcCC------CCEEEEEcCCCceeeecccCC--CceEEEEECCCCCEEEEEcCC--------CEEEEEECCCC
Confidence            45566666543      247888988765433211111  111112222356667777653        45778999887


Q ss_pred             ceEECCCCCCCCCCceEEEECCEEEEEccCC
Q 016328          201 KWQDLPPLPVPRYAPATQLWRGRLHVMGGSG  231 (391)
Q Consensus       201 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~  231 (391)
                      +...+..  ......+++...+..++.|+.+
T Consensus      1036 ~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d 1064 (1249)
T 3sfz_A         1036 DYVFLQA--HQETVKDFRLLQDSRLLSWSFD 1064 (1249)
T ss_dssp             EEECCBC--CSSCEEEEEECSSSEEEEEESS
T ss_pred             ceEEEec--CCCcEEEEEEcCCCcEEEEECC
Confidence            7654332  1222223333334445555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.27  E-value=4.6  Score=40.86  Aligned_cols=174  Identities=6%  Similarity=-0.072  Sum_probs=76.7

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAAP  109 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p  109 (391)
                      ++.+.++|+.++     .+..||..+++  ..+... ...-..+.....+ ....+. ....+..+|..+.+....  +.
T Consensus        24 ~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~--~~   94 (814)
T 3mkq_A           24 TEPWVLTTLYSG-----RVEIWNYETQVEVRSIQVT-ETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNTGEKVVD--FE   94 (814)
T ss_dssp             SSSEEEEEETTS-----EEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTTCCEEEE--EE
T ss_pred             CCCEEEEEeCCC-----EEEEEECCCCceEEEEecC-CCcEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEE--Ee
Confidence            455556666444     67889988876  333321 1011111111111 111111 133566777666554321  11


Q ss_pred             CCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCC
Q 016328          110 VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQC  185 (391)
Q Consensus       110 ~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~  185 (391)
                      .....-....+  ++..++.|+.+      ..+.+||..++ |.....+... ...-.+++..  ++.+++.|+.+    
T Consensus        95 ~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~-~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d----  162 (814)
T 3mkq_A           95 AHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENN-WALEQTFEGH-EHFVMCVAFNPKDPSTFASGCLD----  162 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGT-SEEEEEEECC-SSCEEEEEEETTEEEEEEEEETT----
T ss_pred             cCCCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCC-ceEEEEEcCC-CCcEEEEEEEcCCCCEEEEEeCC----
Confidence            11111122222  44555666543      34888898765 2221111110 1112333443  46677777653    


Q ss_pred             CCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE---CCEEEEEccCC
Q 016328          186 RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW---RGRLHVMGGSG  231 (391)
Q Consensus       186 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~  231 (391)
                          ..+..||..+.+-...-..........++..   ++.+++.|+.+
T Consensus       163 ----g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          163 ----RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (814)
T ss_dssp             ----SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred             ----CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence                4577888765432111111111222223322   56677777654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=93.12  E-value=1.4  Score=39.23  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=37.4

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-C--CEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-G--RYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      +.+++.|+.+      ..+.++|+.+.+|+....+... ...-.+++.. +  +.+++.|+.++        .+..||..
T Consensus        71 ~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~D~--------~i~lwd~~  135 (316)
T 3bg1_A           71 GNILASCSYD------RKVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSSDG--------AISLLTYT  135 (316)
T ss_dssp             SSCEEEEETT------SCEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECSSS--------CEEEEEEC
T ss_pred             CCEEEEEECC------CEEEEEECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcCCC--------CEEEEecC
Confidence            4566677654      2478889888777654333221 1111233332 2  56777777643        35566766


Q ss_pred             CC-ceEEC
Q 016328          199 TK-KWQDL  205 (391)
Q Consensus       199 ~~-~W~~~  205 (391)
                      +. .|...
T Consensus       136 ~~~~~~~~  143 (316)
T 3bg1_A          136 GEGQWEVK  143 (316)
T ss_dssp             SSSCEEEC
T ss_pred             CCCCccee
Confidence            54 46543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=92.98  E-value=5.3  Score=36.40  Aligned_cols=106  Identities=10%  Similarity=0.118  Sum_probs=51.9

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCC------eee-CCCCCCCCCcceEEEEEe-C-CEEEEEeCccCCCCCCCccee
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNT------WGG-RFDMPREMAHSHLGMVTD-G-RYIYVVTGQYGPQCRGPTAHT  192 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~------W~~-~~~~p~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~  192 (391)
                      +.+++.|+.+      ..+.+||..+.+      -.. +...... ...-.+++.. + +.+++.|+.+        ..+
T Consensus       126 ~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d--------g~v  190 (416)
T 2pm9_A          126 DNVLASGGNN------GEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVISLAWNQSLAHVFASAGSS--------NFA  190 (416)
T ss_dssp             TTBEEEECSS------SCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCCEEEECSSCTTEEEEESSS--------SCE
T ss_pred             CCEEEEEcCC------CeEEEEECCCCccccccccccccccccCC-CCCeeEEEeCCCCCcEEEEEcCC--------CCE
Confidence            5677777754      347888888765      111 1111111 1112233333 2 5677777753        347


Q ss_pred             EEEeCCCCceEECCCCCC-----CCCCceEEEE-C-CEEEEEccCCCCccCCCccceEe
Q 016328          193 FVLDTETKKWQDLPPLPV-----PRYAPATQLW-R-GRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       193 ~~yd~~~~~W~~~~~~~~-----~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ..||..+.+-...-..+.     .....+++.. + ..+++.|+.++.  ...+..|++
T Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~  247 (416)
T 2pm9_A          191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDL  247 (416)
T ss_dssp             EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEET
T ss_pred             EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeC
Confidence            789988765433222221     1112222322 2 357777765431  124666663

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=92.87  E-value=3.4  Score=36.20  Aligned_cols=71  Identities=7%  Similarity=0.035  Sum_probs=40.3

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe---CCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD---GRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      +++.++.|+.+      ..+.+||..+++.+.+..+... ...-.+++..   ++.+++.|+.+        ..+..||.
T Consensus        20 ~g~~las~s~D------~~v~iw~~~~~~~~~~~~l~gH-~~~V~~v~~s~~~~g~~l~s~s~D--------~~v~iWd~   84 (297)
T 2pm7_B           20 YGKRMATCSSD------KTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD--------GKVMIWKE   84 (297)
T ss_dssp             TSSEEEEEETT------SCEEEEEBCSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------TEEEEEEB
T ss_pred             CCCEEEEEeCC------CEEEEEecCCCCcEEEEEEccc-cCCeEEEEecCCCcCCEEEEEcCC--------CEEEEEEc
Confidence            45667777764      2477888876554443333321 1112233332   25677777754        45678888


Q ss_pred             CCCceEECC
Q 016328          198 ETKKWQDLP  206 (391)
Q Consensus       198 ~~~~W~~~~  206 (391)
                      .+.+|..+.
T Consensus        85 ~~~~~~~~~   93 (297)
T 2pm7_B           85 ENGRWSQIA   93 (297)
T ss_dssp             SSSCBCCCE
T ss_pred             CCCceEEEE
Confidence            887776543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.85  E-value=5.7  Score=39.21  Aligned_cols=76  Identities=8%  Similarity=-0.001  Sum_probs=41.9

Q ss_pred             ECCE----EEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeE
Q 016328          120 IKNL----LYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF  193 (391)
Q Consensus       120 ~~~~----vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  193 (391)
                      .+++    ||+...       ...+..+|..+.+  |+.-..-+........+-++.++.||+-.+.....   ....+.
T Consensus       116 ~~g~~~~rV~v~t~-------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g---~~g~v~  185 (599)
T 1w6s_A          116 GDGKTPALILKTQL-------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELG---VRGYLT  185 (599)
T ss_dssp             CCSSSCCEEEEECT-------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGT---CCCEEE
T ss_pred             cCCcceeEEEEEcC-------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccC---CCCeEE
Confidence            4666    887542       2358899988775  88632111000011223345788888743211111   135789


Q ss_pred             EEeCCCCc--eEEC
Q 016328          194 VLDTETKK--WQDL  205 (391)
Q Consensus       194 ~yd~~~~~--W~~~  205 (391)
                      .||.++.+  |+.-
T Consensus       186 A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          186 AYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEETTTCCEEEEEE
T ss_pred             EEECCCCcEEEEEc
Confidence            99998765  8754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=92.85  E-value=4.5  Score=35.33  Aligned_cols=53  Identities=13%  Similarity=0.251  Sum_probs=27.3

Q ss_pred             ccccccccccCceEEccCCCCCccCceEEEE--C--CEEEEEeccCCCCCCcceeEEEECCCC
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--K--NLLYVFAGYGSIDYVHSHVDIYNFTDN  148 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--~~vyv~GG~~~~~~~~~~~~~yd~~~~  148 (391)
                      ..+..+|..+.+|..+..+.........+.+  +  +.+++.|+.+      ..+.+||+.+.
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~  133 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKEN  133 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSS
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCC
Confidence            3566677766666544332222222222333  1  4566677654      34777887765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.83  E-value=5.8  Score=38.86  Aligned_cols=80  Identities=8%  Similarity=0.041  Sum_probs=45.7

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeE
Q 016328          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF  193 (391)
Q Consensus       116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  193 (391)
                      +.++.+++||+...       ...+..+|..+.  .|+.-..-+........+-++.++.||+-.+.....   ....++
T Consensus       110 ~~~~~~~~v~v~~~-------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~---~~g~v~  179 (571)
T 2ad6_A          110 GLAYGAGQIVKKQA-------NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELG---VRGAVN  179 (571)
T ss_dssp             CCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGT---CCCEEE
T ss_pred             ccEEECCEEEEEeC-------CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccC---CCCEEE
Confidence            34567889998743       235899999877  487632111000011223345689888754321111   135789


Q ss_pred             EEeCCCCc--eEEC
Q 016328          194 VLDTETKK--WQDL  205 (391)
Q Consensus       194 ~yd~~~~~--W~~~  205 (391)
                      .||+++.+  |+.-
T Consensus       180 a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          180 AFDLKTGELKWRAF  193 (571)
T ss_dssp             EEETTTCCEEEEEE
T ss_pred             EEECCCCcEEEEEc
Confidence            99998754  8653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.81  E-value=1.2  Score=45.18  Aligned_cols=93  Identities=5%  Similarity=0.048  Sum_probs=46.0

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++..+++|+.+      ..+.+||..+.+....-....   ..-.+++. -++..++.|+.+        ..+..||..+
T Consensus        66 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~d--------g~i~vw~~~~  128 (814)
T 3mkq_A           66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDD--------LTVKLWNWEN  128 (814)
T ss_dssp             GGTEEEEEETT------SEEEEEETTTCCEEEEEECCS---SCEEEEEECSSSSEEEEEETT--------SEEEEEEGGG
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEecCC---CCEEEEEEeCCCCEEEEEcCC--------CEEEEEECCC
Confidence            45666677653      358899998876544211111   11223333 245555666542        4577888876


Q ss_pred             CceEECCCCC-CCCCCceEEEE--CCEEEEEccCC
Q 016328          200 KKWQDLPPLP-VPRYAPATQLW--RGRLHVMGGSG  231 (391)
Q Consensus       200 ~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~  231 (391)
                      + |.....+. ....-.+++..  ++.+++.|+.+
T Consensus       129 ~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A          129 N-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             T-SEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             C-ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            5 22222111 11111222333  45677777654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=92.78  E-value=5  Score=35.63  Aligned_cols=65  Identities=9%  Similarity=-0.051  Sum_probs=35.6

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeC-CCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR-FDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      ++.+++.|+.+      ..+.+||..+.+-... ..+... ...-.+++. -++..++.|+.+        ..+..||..
T Consensus       127 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~  191 (366)
T 3k26_A          127 DPNLLLSVSKD------HALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMD--------HSLKLWRIN  191 (366)
T ss_dssp             CTTEEEEEETT------SCEEEEETTTTEEEEEECSTTSC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEESC
T ss_pred             CCCEEEEEeCC------CeEEEEEeecCeEEEEecccccc-cCceeEEEECCCCCEEEEecCC--------CCEEEEECC
Confidence            45677777764      3488899987754432 111211 112223333 245566677653        346778877


Q ss_pred             CC
Q 016328          199 TK  200 (391)
Q Consensus       199 ~~  200 (391)
                      +.
T Consensus       192 ~~  193 (366)
T 3k26_A          192 SK  193 (366)
T ss_dssp             SH
T ss_pred             CC
Confidence            54

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=92.77  E-value=3.8  Score=37.11  Aligned_cols=28  Identities=11%  Similarity=-0.001  Sum_probs=17.0

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDN  148 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~  148 (391)
                      ++++++.|+.+........++.|+..+.
T Consensus        53 DG~~las~s~d~~~~wd~~v~~~~~~~~   80 (357)
T 4g56_B           53 DGALLLAASSLSSRTWGGSIWVFKDPEG   80 (357)
T ss_dssp             SSCEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred             CCCEEEEEcCCCCccccCeEEEEECCCC
Confidence            6788888776543222345778876554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=92.74  E-value=1.8  Score=38.13  Aligned_cols=99  Identities=14%  Similarity=0.135  Sum_probs=47.4

Q ss_pred             ccccccccccCceEEccCCCCC----ccCceEEEE--CCEEEEEecc---CCCCC--CcceeEEEECCCCCeeeCCCCCC
Q 016328           90 ATFQDLPAPELKWEKMKAAPVP----RLDGAAIQI--KNLLYVFAGY---GSIDY--VHSHVDIYNFTDNTWGGRFDMPR  158 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~----r~~~~~~~~--~~~vyv~GG~---~~~~~--~~~~~~~yd~~~~~W~~~~~~p~  158 (391)
                      ..+..+|..+.+-...-..+.+    ..-..++..  ++.+|+....   .....  ....+.+||+.+.+....-..+.
T Consensus        56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  135 (337)
T 1pby_B           56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR  135 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS
T ss_pred             CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC
Confidence            3577788776654321111110    012233332  3477776421   10110  12569999998876543222222


Q ss_pred             CCCcceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceE
Q 016328          159 EMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ  203 (391)
Q Consensus       159 ~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~  203 (391)
                        .  ...++.  .+..||+..           ..+..||+.+.+-.
T Consensus       136 --~--~~~~~~s~dg~~l~~~~-----------~~i~~~d~~~~~~~  167 (337)
T 1pby_B          136 --Q--ITMLAWARDGSKLYGLG-----------RDLHVMDPEAGTLV  167 (337)
T ss_dssp             --S--CCCEEECTTSSCEEEES-----------SSEEEEETTTTEEE
T ss_pred             --C--cceeEECCCCCEEEEeC-----------CeEEEEECCCCcEe
Confidence              1  112223  234576661           34788998877543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=92.60  E-value=1.7  Score=42.39  Aligned_cols=145  Identities=6%  Similarity=-0.075  Sum_probs=68.9

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-ccccccccccccccccc--ccCceEEccC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPA--PELKWEKMKA  107 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~--~~~~W~~~~~  107 (391)
                      ++.+|+.+..++     .+..||..+++  ..++....  .+++...-.+ +...... ...+..||.  .+.+  .+..
T Consensus       148 ~~~~~vs~~~d~-----~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~-d~~V~v~D~~~~t~~--~~~~  217 (543)
T 1nir_A          148 PNLFSVTLRDAG-----QIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGR-DARIDMIDLWAKEPT--KVAE  217 (543)
T ss_dssp             GGEEEEEEGGGT-----EEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEET-TSEEEEEETTSSSCE--EEEE
T ss_pred             CCEEEEEEcCCC-----eEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECC-CCeEEEEECcCCCCc--EEEE
Confidence            678888876443     67889999887  44442111  2333232222 1111111 146778887  4433  2333


Q ss_pred             CCCCccCceEEEE-----CC-EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC---------CCCCcceEEEEEe-C
Q 016328          108 APVPRLDGAAIQI-----KN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP---------REMAHSHLGMVTD-G  171 (391)
Q Consensus       108 ~p~~r~~~~~~~~-----~~-~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---------~~~~r~~~~~~~~-~  171 (391)
                      ++....-..++.-     ++ .+|+..-.      ...+.++|..+.+-...-+.+         .+.+|....+... +
T Consensus       218 i~~g~~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~  291 (543)
T 1nir_A          218 IKIGIEARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  291 (543)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             EecCCCcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence            3322222233332     34 56665422      245778888776533211110         0112322222222 4


Q ss_pred             CEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328          172 RYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       172 ~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (391)
                      ..+|+....        ...++.+|..+.+
T Consensus       292 ~~~~vs~~~--------~g~i~vvd~~~~~  313 (543)
T 1nir_A          292 PEFIVNVKE--------TGKVLLVNYKDID  313 (543)
T ss_dssp             SEEEEEETT--------TTEEEEEECTTSS
T ss_pred             CEEEEEECC--------CCeEEEEEecCCC
Confidence            566655421        4678888887643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.56  E-value=1.3  Score=39.32  Aligned_cols=104  Identities=9%  Similarity=0.015  Sum_probs=52.7

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe---CCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD---GRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      +++.++.|+.+      ..+.+||+.+++...+..+... ...-.+++..   ++.+++.|+.+        ..+..||+
T Consensus        24 ~g~~lasgs~D------~~v~lwd~~~~~~~~~~~l~gH-~~~V~~v~~~~~~~~~~l~s~s~D--------~~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSD------RSVKIFDVRNGGQILIADLRGH-EGPVWQVAWAHPMYGNILASCSYD--------RKVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETT------TEEEEEEEETTEEEEEEEEECC-SSCEEEEEECCGGGSSCEEEEETT--------SCEEEECC
T ss_pred             CCCEEEEEeCC------CeEEEEEecCCCcEEEEEEcCC-CccEEEEEeCCCCCCCEEEEEECC--------CEEEEEEC
Confidence            45667777754      3477888876654333222221 1112233332   25677777754        34677888


Q ss_pred             CCCceEECCCCCC-CCCCceEEEE-C--CEEEEEccCCCCccCCCccceEe
Q 016328          198 ETKKWQDLPPLPV-PRYAPATQLW-R--GRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       198 ~~~~W~~~~~~~~-~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      .+.+|+.+..+.. ...-.+++.. +  +.+++.|+.++     .+..|++
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~  134 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTY  134 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEE
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEec
Confidence            8877654432221 1111222222 2  45677776543     3555553

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.55  E-value=2.1  Score=39.73  Aligned_cols=64  Identities=9%  Similarity=0.018  Sum_probs=34.9

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++.+++.|+.+.      .+.+||+.+.+-.  ..+... ...-.+++.. ++..++.|+.+        ..+..||..+
T Consensus       161 ~~~~l~sgs~D~------~i~iwd~~~~~~~--~~~~~h-~~~V~~v~~~p~~~~l~s~s~D--------~~i~~wd~~~  223 (410)
T 1vyh_C          161 SGKLLASCSADM------TIKLWDFQGFECI--RTMHGH-DHNVSSVSIMPNGDHIVSASRD--------KTIKMWEVQT  223 (410)
T ss_dssp             TSSEEEEEETTS------CCCEEETTSSCEE--ECCCCC-SSCEEEEEECSSSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEeCCC------eEEEEeCCCCcee--EEEcCC-CCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCC
Confidence            456777777653      3667887654432  223221 1112233332 55666777653        4577888877


Q ss_pred             Cc
Q 016328          200 KK  201 (391)
Q Consensus       200 ~~  201 (391)
                      ..
T Consensus       224 ~~  225 (410)
T 1vyh_C          224 GY  225 (410)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.43  E-value=3.3  Score=36.93  Aligned_cols=104  Identities=11%  Similarity=0.133  Sum_probs=47.7

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCC-----CeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEE
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDN-----TWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFV  194 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~-----~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  194 (391)
                      ++.+++.|+.+.      .+.+||....     .++.+..+... ...-.+++. .++++++.|+.++        .+..
T Consensus        69 ~~~~las~s~D~------~v~iw~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~g~~las~s~D~--------~v~i  133 (330)
T 2hes_X           69 HTSLLAAGSFDS------TVSIWAKEESADRTFEMDLLAIIEGH-ENEVKGVAWSNDGYYLATCSRDK--------SVWI  133 (330)
T ss_dssp             TSSEEEEEETTS------CEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTS--------CEEE
T ss_pred             CCCEEEEEeCCC------cEEEEEcccCcCccccceeEEEEcCC-CCcEEEEEECCCCCEEEEEeCCC--------EEEE
Confidence            456777777642      3677776432     23322222210 111122333 2567777777543        4567


Q ss_pred             EeCCC--CceEECCCCCCCCCCceEEE--ECCEEEEEccCCCCccCCCccceEe
Q 016328          195 LDTET--KKWQDLPPLPVPRYAPATQL--WRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       195 yd~~~--~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ||...  ..++.+..+......-..+.  -++.+++.|+.++     .+..|+.
T Consensus       134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-----~i~iW~~  182 (330)
T 2hes_X          134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD-----TVRIWKD  182 (330)
T ss_dssp             EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEE
T ss_pred             EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEC
Confidence            77732  34444332221111111222  2566777777643     4666763

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=92.40  E-value=6.7  Score=36.21  Aligned_cols=210  Identities=18%  Similarity=0.173  Sum_probs=112.9

Q ss_pred             CceEE--ccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCC-----CCCC--CCCcceEEEEEe
Q 016328          100 LKWEK--MKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF-----DMPR--EMAHSHLGMVTD  170 (391)
Q Consensus       100 ~~W~~--~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-----~~p~--~~~r~~~~~~~~  170 (391)
                      +.|++  |+..|..-.-|+.+.+++.=|++|=.++.-....--..|-+  +.|..-.     ..|.  ...-...++-.+
T Consensus       270 spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs--~~~~sp~~~vrr~i~sey~~~AsEPCvkyY  347 (670)
T 3ju4_A          270 SPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFP--DAFNSPSNYVRRQIPSEYEPDASEPCIKYY  347 (670)
T ss_dssp             SCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEET--TTTTCTTCCEEEECCGGGCTTEEEEEEEEE
T ss_pred             CCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEec--ccccCCcceeeeechhhhccccccchhhhh
Confidence            45654  45566555679999999888888754433222111122222  2232211     0111  112344677789


Q ss_pred             CCEEEEEe-CccCCCCCCCcceeEEEeCCCCceEECC-CCCCCCCCceEEEECCEEEEEccCCC----------CccC--
Q 016328          171 GRYIYVVT-GQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRGRLHVMGGSGE----------NRYT--  236 (391)
Q Consensus       171 ~~~iyv~G-G~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~----------~~~~--  236 (391)
                      ++.||+.- |..+..   .-+.+.+-+.....|+.+. +-..-....-.+.+++.||+||-...          ++|.  
T Consensus       348 dgvLyLtTRgt~~~~---~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY~a~  424 (670)
T 3ju4_A          348 DGVLYLITRGTRGDR---LGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKAS  424 (670)
T ss_dssp             TTEEEEEEEESCTTS---CCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCB
T ss_pred             CCEEEEEecCcCCCC---CcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEeccccccccccCCCccccccc
Confidence            99999974 333322   2577888888899999875 22233334456789999999985421          1221  


Q ss_pred             -CCccceEeeeecCCcccCCceeecC------CCCCCcceeE-EEECCEE-EEEeCCCCCCCcCCCCCccccCcCCceec
Q 016328          237 -PEVDHWSLAVKDGKPLEKEWRTEIP------IPRGGPHRAC-VVVDDRL-LVIGGQEGDFMAKPGSPIFKCSRRNEVVY  307 (391)
Q Consensus       237 -~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~~~~~~~-~~~~~~i-~v~GG~~~~~~~~~~~~~~~~~~~~~~~~  307 (391)
                       |.+-.-...+.++..+.-+|..+..      ......+.+. |+.++-| |+|||++.-..-.-.+...+.....+..-
T Consensus       425 yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~~~~~~Ghp  504 (670)
T 3ju4_A          425 YPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHP  504 (670)
T ss_dssp             CCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCCTTSTTCCC
T ss_pred             CCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccCccccCCCC
Confidence             1111112223444455667876532      2223333444 4556765 56899864433222233333344444556


Q ss_pred             CcEEEEc
Q 016328          308 DDVYMLD  314 (391)
Q Consensus       308 ~~v~~~d  314 (391)
                      .|+|+|.
T Consensus       505 ~dlY~~r  511 (670)
T 3ju4_A          505 SDLYCYK  511 (670)
T ss_dssp             CEEEEEE
T ss_pred             cceEEEE
Confidence            7888884

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=92.38  E-value=6.1  Score=35.68  Aligned_cols=65  Identities=2%  Similarity=-0.067  Sum_probs=35.7

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      ..++++|+.+.+-+.+..-+.   ...+....- +++.+++.......  .....++.+|+.+...+.+..
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~---~~~~~~~sp~dg~~l~~~~~~~~~--~~~~~l~~~d~~~~~~~~l~~  233 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQ---WLGHPIYRPYDDSTVAFCHEGPHD--LVDARMWLINEDGTNMRKVKT  233 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESS---CEEEEEEETTEEEEEEEEECSCTT--TSSCSEEEEETTSCCCEESCC
T ss_pred             ceEEEEECCCCceEEeecCCc---cccccEECCCCCCEEEEEEecCCC--CCcceEEEEeCCCCceEEeee
Confidence            569999999887665532221   222222223 45444443322111  114689999998877776654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=92.24  E-value=5.5  Score=34.82  Aligned_cols=65  Identities=11%  Similarity=0.125  Sum_probs=33.9

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCC-------CeeeCCCCCCCCCcceEEEEEe-C--CEEEEEeCccCCCCCCCcce
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDN-------TWGGRFDMPREMAHSHLGMVTD-G--RYIYVVTGQYGPQCRGPTAH  191 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~-------~W~~~~~~p~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~  191 (391)
                      +.+++.|+.++      .+.+||..+.       .|+.+..+... ...-.+++.. +  +.+++.|+.+        ..
T Consensus        71 ~~~l~s~~~dg------~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d--------g~  135 (351)
T 3f3f_A           71 GRIIASASYDK------TVKLWEEDPDQEECSGRRWNKLCTLNDS-KGSLYSVKFAPAHLGLKLACLGND--------GI  135 (351)
T ss_dssp             CSEEEEEETTS------CEEEEEECTTSCTTSSCSEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------CE
T ss_pred             CCEEEEEcCCC------eEEEEecCCCcccccccCcceeeeeccc-CCceeEEEEcCCCCCcEEEEecCC--------Cc
Confidence            56777777642      3777777654       33443333221 1112233333 2  5566666643        45


Q ss_pred             eEEEeCCCCc
Q 016328          192 TFVLDTETKK  201 (391)
Q Consensus       192 ~~~yd~~~~~  201 (391)
                      +..||..+.+
T Consensus       136 v~iwd~~~~~  145 (351)
T 3f3f_A          136 LRLYDALEPS  145 (351)
T ss_dssp             EEEEECSSTT
T ss_pred             EEEecCCChH
Confidence            7788876543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=92.03  E-value=3.9  Score=35.74  Aligned_cols=88  Identities=14%  Similarity=0.083  Sum_probs=48.1

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      .++++++|..+      ..+.++|.++.+  |+.-..-.   ...+.....-+++|++.+          ...+..||+.
T Consensus         4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilvs~----------~~~V~~~d~~   64 (276)
T 3no2_A            4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILFSY----------SKGAKMITRD   64 (276)
T ss_dssp             CCEEEEECTTC------SEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEEEC----------BSEEEEECTT
T ss_pred             CCcEEEeeCCC------CEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEEeC----------CCCEEEECCC
Confidence            35777776543      458889987764  77643211   123344455688888842          2458889983


Q ss_pred             CC-ceEECCCCCCCCCCceEE-EECCEEEEEcc
Q 016328          199 TK-KWQDLPPLPVPRYAPATQ-LWRGRLHVMGG  229 (391)
Q Consensus       199 ~~-~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG  229 (391)
                      .+ .|+.-.+  .....+++. ..++++++...
T Consensus        65 G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~   95 (276)
T 3no2_A           65 GRELWNIAAP--AGCEMQTARILPDGNALVAWC   95 (276)
T ss_dssp             SCEEEEEECC--TTCEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEcCC--CCccccccEECCCCCEEEEec
Confidence            22 3765432  111122333 34666666643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.02  E-value=1.1  Score=40.23  Aligned_cols=61  Identities=8%  Similarity=-0.008  Sum_probs=35.6

Q ss_pred             eeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      .++.+|..+.+++.+...... .. ...++. -+++||+.+....      ...+..||+.+.+++.+..
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~-~~-p~~~a~spdg~l~~~~~~~~------~~~v~~~~~~~g~~~~~~~   80 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAAT-QN-PTYLALSAKDCLYSVDKEDD------EGGIAAWQIDGQTAHKLNT   80 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC-SC-CCCEEECTTCEEEEEEEETT------EEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeecc-CC-cceEEEccCCeEEEEEecCC------CceEEEEEecCCcEEEeee
Confidence            477788888887764322210 11 112333 3677887753211      3678899998888776654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=91.98  E-value=11  Score=37.72  Aligned_cols=98  Identities=18%  Similarity=0.284  Sum_probs=59.0

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCC------CcceEEEEEeCCEEEEEeCccCCCCCC
Q 016328          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREM------AHSHLGMVTDGRYIYVVTGQYGPQCRG  187 (391)
Q Consensus       116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~------~r~~~~~~~~~~~iyv~GG~~~~~~~~  187 (391)
                      +-++.++.||+....       ..++.+|..+.+  |+.-...+...      .....+.++.+++||+...        
T Consensus        72 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--------  136 (677)
T 1kb0_A           72 TPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------  136 (677)
T ss_dssp             CCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--------
T ss_pred             CCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC--------
Confidence            346679999998652       458999988764  88754332100      0112345668999998632        


Q ss_pred             CcceeEEEeCCCCc--eEECCC-C-CC-CCCCceEEEECCEEEEEcc
Q 016328          188 PTAHTFVLDTETKK--WQDLPP-L-PV-PRYAPATQLWRGRLHVMGG  229 (391)
Q Consensus       188 ~~~~~~~yd~~~~~--W~~~~~-~-~~-~r~~~~~~~~~~~iyv~GG  229 (391)
                       ...++.+|.++.+  |+.-.. - +. .....+-++.++++|+..+
T Consensus       137 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~  182 (677)
T 1kb0_A          137 -DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNG  182 (677)
T ss_dssp             -TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCB
T ss_pred             -CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEec
Confidence             3568899998765  876432 1 11 1122234467888877543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=91.97  E-value=2  Score=39.55  Aligned_cols=96  Identities=9%  Similarity=-0.056  Sum_probs=48.4

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeee-----CCCCCCCCCcceEEEEEe-CC-EEEEEeCccCCCCCCCcceeE
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-----RFDMPREMAHSHLGMVTD-GR-YIYVVTGQYGPQCRGPTAHTF  193 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~-----~~~~p~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~  193 (391)
                      ++.+++.|+.+      ..+.+||..++....     +..+... ...-.+++.. ++ .+++.|+.+        ..+.
T Consensus        93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~d--------g~i~  157 (402)
T 2aq5_A           93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCD--------NVIL  157 (402)
T ss_dssp             CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECC-SSCEEEEEECSSBTTEEEEEETT--------SCEE
T ss_pred             CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCC-CCeEEEEEECcCCCCEEEEEcCC--------CEEE
Confidence            56777777754      348889988875422     1111111 1112233333 32 577777654        3477


Q ss_pred             EEeCCCCceEECCC-CCCCCCCceEEEE-CCEEEEEccCC
Q 016328          194 VLDTETKKWQDLPP-LPVPRYAPATQLW-RGRLHVMGGSG  231 (391)
Q Consensus       194 ~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~  231 (391)
                      .||..+.+....-. ......-.+++.. ++++++.|+.+
T Consensus       158 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  197 (402)
T 2aq5_A          158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD  197 (402)
T ss_dssp             EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred             EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence            89988775432211 1111112222222 56677777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=91.92  E-value=3.2  Score=42.24  Aligned_cols=160  Identities=7%  Similarity=0.029  Sum_probs=80.9

Q ss_pred             cccccccccCceEEccCCCCCccC-ceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC-CC-CcceEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLD-GAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EM-AHSHLG  166 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~~-~r~~~~  166 (391)
                      -+..||+.+.+++.......+... .++... ++.|+|...        .-+.+||+.+++|+.....+. +. ...-.+
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred             CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeEE
Confidence            466778877777766432111111 222222 467777532        238899999998877543221 00 111122


Q ss_pred             EEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC---CCCCCCCceEEE-ECCEEEEEccCCCCccCCCccc
Q 016328          167 MVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDH  241 (391)
Q Consensus       167 ~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~  241 (391)
                      ++. -++.||+..-         ..-+++||+.+++++....   ++... -.+++. .++.|++... .+      .  
T Consensus       500 i~~d~~g~lWigt~---------~~Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~-~G------l--  560 (781)
T 3v9f_A          500 IAQDSEGRFWIGTF---------GGGVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG-EG------L--  560 (781)
T ss_dssp             EEECTTCCEEEEES---------SSCEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET-TE------E--
T ss_pred             EEEcCCCCEEEEEc---------CCCEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC-CC------c--
Confidence            322 3577887531         1347889999998887653   22111 112222 2566776532 11      0  


Q ss_pred             eEeeeecCCcccCCceeec---CCCCCCcceeEEE-ECCEEEEEe
Q 016328          242 WSLAVKDGKPLEKEWRTEI---PIPRGGPHRACVV-VDDRLLVIG  282 (391)
Q Consensus       242 ~~~~~~~~d~~~~~W~~~~---~~p~~~~~~~~~~-~~~~i~v~G  282 (391)
                          ++.||+++++++...   .+|..... +++. -++.|++.+
T Consensus       561 ----v~~~d~~~~~~~~~~~~~gl~~~~i~-~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          561 ----VCFPSARNFDYQVFQRKEGLPNTHIR-AISEDKNGNIWAST  600 (781)
T ss_dssp             ----EEESCTTTCCCEEECGGGTCSCCCCC-EEEECSSSCEEEEC
T ss_pred             ----eEEECCCCCcEEEccccCCCCCceEE-EEEECCCCCEEEEc
Confidence                133456666665542   24433322 2222 256777764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=91.89  E-value=7.3  Score=35.54  Aligned_cols=23  Identities=4%  Similarity=-0.260  Sum_probs=16.5

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      ++.+++.|+.++     .+..||..+.+
T Consensus       108 ~~~~l~~~~~dg-----~i~iwd~~~~~  130 (420)
T 3vl1_A          108 QMRRFILGTTEG-----DIKVLDSNFNL  130 (420)
T ss_dssp             SSCEEEEEETTS-----CEEEECTTSCE
T ss_pred             CCCEEEEEECCC-----CEEEEeCCCcc
Confidence            566677776555     57888888777

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.80  E-value=0.81  Score=41.01  Aligned_cols=93  Identities=10%  Similarity=0.002  Sum_probs=47.3

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      +.+++.|+.+      ..+.+||+.+.+-...  +... ...-.+++..  ++.+++.|+.+        ..+..||..+
T Consensus        85 ~~~l~~~~~d------g~i~v~d~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSR------GIIRIINPITMQCIKH--YVGH-GNAINELKFHPRDPNLLLSVSKD--------HALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETT------CEEEEECTTTCCEEEE--EESC-CSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTT
T ss_pred             CCEEEEecCC------CEEEEEEchhceEeee--ecCC-CCcEEEEEECCCCCCEEEEEeCC--------CeEEEEEeec
Confidence            4677777764      3588899876643221  1110 1112233333  56777777753        3577889887


Q ss_pred             CceEEC-CCCCCCCC-CceEEE-ECCEEEEEccCC
Q 016328          200 KKWQDL-PPLPVPRY-APATQL-WRGRLHVMGGSG  231 (391)
Q Consensus       200 ~~W~~~-~~~~~~r~-~~~~~~-~~~~iyv~GG~~  231 (391)
                      .+-... ..+..... -.+++. -+++.++.|+.+
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  182 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD  182 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence            653322 11121111 122222 245566777654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=91.77  E-value=2.8  Score=45.02  Aligned_cols=129  Identities=10%  Similarity=0.061  Sum_probs=60.5

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~  170 (391)
                      .+..+|..+.+...+....  ..-.++....+..++.|+.+      ..+.+||..+.+-...-..+.  ..........
T Consensus      1026 ~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~--~~v~~~~~s~ 1095 (1249)
T 3sfz_A         1026 VIQVWNWQTGDYVFLQAHQ--ETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGRIERDFTCHQ--GTVLSCAISS 1095 (1249)
T ss_dssp             BEEEEETTTTEEECCBCCS--SCEEEEEECSSSEEEEEESS------SEEEEEETTTTCCCEEEECCS--SCCCCEEECS
T ss_pred             EEEEEECCCCceEEEecCC--CcEEEEEEcCCCcEEEEECC------CcEEEEECCCCceeEEEcccC--CcEEEEEECC
Confidence            5666776666544322111  11122233333345555543      358889988765332111111  1111222234


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE--EECCEEEEEccCCCCccCCCccceEe
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ--LWRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ++++++.|+.++        .+..||..+.+  .+..+......-.++  .-++++++.|+.++     .+..|++
T Consensus      1096 d~~~l~s~s~d~--------~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg-----~i~vwd~ 1156 (1249)
T 3sfz_A         1096 DATKFSSTSADK--------TAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNG-----EIRIWNV 1156 (1249)
T ss_dssp             SSSSCEEECCSS--------CCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETTS-----CCCEEES
T ss_pred             CCCEEEEEcCCC--------cEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEEC
Confidence            566777777544        34567776543  222222111111222  23677788877543     3666764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=91.67  E-value=4.1  Score=40.28  Aligned_cols=238  Identities=10%  Similarity=-0.052  Sum_probs=108.0

Q ss_pred             ccccccccc--c-CceEEccCCCCC--c-cCceEE-EECCEEEEEeccCC----CCCCcceeEEEECCC------CCeee
Q 016328           90 ATFQDLPAP--E-LKWEKMKAAPVP--R-LDGAAI-QIKNLLYVFAGYGS----IDYVHSHVDIYNFTD------NTWGG  152 (391)
Q Consensus        90 ~~~~~~d~~--~-~~W~~~~~~p~~--r-~~~~~~-~~~~~vyv~GG~~~----~~~~~~~~~~yd~~~------~~W~~  152 (391)
                      ..++.++..  . ..-.++...+..  . .....+ .-+++.+++...+.    .......++++|..+      .+-+.
T Consensus       102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  181 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE  181 (662)
T ss_dssp             CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred             CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence            356677765  3 455555544311  1 111222 22554444443321    112235699999988      66665


Q ss_pred             CC-CCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCC-CCceEECCCCCCC--CCCceEE-EECCEEEEE
Q 016328          153 RF-DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE-TKKWQDLPPLPVP--RYAPATQ-LWRGRLHVM  227 (391)
Q Consensus       153 ~~-~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~--r~~~~~~-~~~~~iyv~  227 (391)
                      +. .-+.   ........-+++..++...+.........+++.+|.. +.++.....+...  ......+ .-++++|+.
T Consensus       182 l~~~~~~---~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~  258 (662)
T 3azo_A          182 LSDDAHR---FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA  258 (662)
T ss_dssp             SSCSCSS---EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE
T ss_pred             EEecCCC---cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE
Confidence            54 2111   1111112235544444433322111114689999998 5633222222111  1111222 236777766


Q ss_pred             ccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCC------c-ceeEEEE-CCEEEEEeCCCCCCCcCCCCCcccc
Q 016328          228 GGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG------P-HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKC  299 (391)
Q Consensus       228 GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~------~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~  299 (391)
                      +..++     ....     +.+|+.+.+++.+.+.....      . ....+.. ++++++.+.. +.            
T Consensus       259 ~~~~~-----~~~l-----~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~------------  315 (662)
T 3azo_A          259 TDRTG-----WWNL-----HRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA------------  315 (662)
T ss_dssp             ECTTS-----SCEE-----EEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS------------
T ss_pred             ECCCC-----CeEE-----EEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc------------
Confidence            54432     1122     23345566776654322111      0 0123333 6777776654 22            


Q ss_pred             CcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeE-EEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          300 SRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAW-VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       300 ~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~-~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                              ..+|.+| .+.+.+.+.. +  ... ...+ ..-++.+++..+....         ..++|.+|+++.+
T Consensus       316 --------~~l~~~d~~~~~~~~l~~-~--~~~-~~~~~s~~~~~~~~~~~~~~~---------~~~i~~~d~~~g~  371 (662)
T 3azo_A          316 --------AVLGILDPESGELVDAAG-P--WTE-WAATLTVSGTRAVGVAASPRT---------AYEVVELDTVTGR  371 (662)
T ss_dssp             --------CEEEEEETTTTEEEECCS-S--CCE-EEEEEEEETTEEEEEEEETTE---------EEEEEEEETTTCC
T ss_pred             --------cEEEEEECCCCcEEEecC-C--CCe-EEEEEecCCCEEEEEEcCCCC---------CCEEEEEECCCCc
Confidence                    2488888 6666666632 1  111 1222 3345666666554321         1368888865443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=91.27  E-value=9.4  Score=35.56  Aligned_cols=65  Identities=14%  Similarity=0.199  Sum_probs=36.3

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (391)
                      +++++.|+.+      ..+.+||+.+.+....-....  ...-.+++..++.+++.|+.+        ..+..||..+.+
T Consensus       210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~sd~~~l~s~~~d--------~~v~vwd~~~~~  273 (450)
T 2vdu_B          210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFGH--KHFVSSICCGKDYLLLSAGGD--------DKIFAWDWKTGK  273 (450)
T ss_dssp             CEEEEEEETT------SCEEEEEESCTTCEEEECCCC--SSCEEEEEECSTTEEEEEESS--------SEEEEEETTTCC
T ss_pred             CcEEEEEcCC------CcEEEEECCCCceeeeeecCC--CCceEEEEECCCCEEEEEeCC--------CeEEEEECCCCc
Confidence            7778888764      348888887765432101011  111122222267677777643        467788888765


Q ss_pred             e
Q 016328          202 W  202 (391)
Q Consensus       202 W  202 (391)
                      .
T Consensus       274 ~  274 (450)
T 2vdu_B          274 N  274 (450)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=91.25  E-value=5.1  Score=37.00  Aligned_cols=91  Identities=9%  Similarity=0.063  Sum_probs=43.5

Q ss_pred             eEeeecCCCCe-eecCC-CCCCCC-ceeeEeecC-cccccccccccccccccccCceEEccCCCCCccCceEEEECCEEE
Q 016328           50 IASNWSPYHNS-IILPN-NGPQKG-ENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLY  125 (391)
Q Consensus        50 ~~~~~d~~~~~-~~lp~-~~~r~~-~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vy  125 (391)
                      .+..||..+++ ..+-. ..+... ..++....+ +...+. ....+..+|..+.+-  +..+........+...++.++
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs-~Dg~v~iWd~~~~~~--~~~~~~h~~~v~~~s~~~~~l  202 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-SSAEVQLWDVQQQKR--LRNMTSHSARVGSLSWNSYIL  202 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEE--EEEECCCSSCEEEEEEETTEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE-CCCeEEEEEcCCCcE--EEEEeCCCCceEEEeeCCCEE
Confidence            68889999887 33222 111111 122222112 222221 233566777665542  222222222333445567777


Q ss_pred             EEeccCCCCCCcceeEEEECCCCC
Q 016328          126 VFAGYGSIDYVHSHVDIYNFTDNT  149 (391)
Q Consensus       126 v~GG~~~~~~~~~~~~~yd~~~~~  149 (391)
                      +.|+.+      ..+..+|.....
T Consensus       203 ~sgs~d------~~i~~~d~~~~~  220 (420)
T 4gga_A          203 SSGSRS------GHIHHHDVRVAE  220 (420)
T ss_dssp             EEEETT------SEEEEEETTSSS
T ss_pred             EEEeCC------CceeEeeecccc
Confidence            777754      346777766543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=91.18  E-value=3.3  Score=37.44  Aligned_cols=68  Identities=10%  Similarity=-0.042  Sum_probs=35.1

Q ss_pred             ECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC-CCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328          120 IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       120 ~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      ..+..++.|+.+      ..+.+||+.+++-........ .....-.+++. -+++.++.|+.++        .+..||+
T Consensus        91 s~d~~l~~~s~d------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~--------~i~iwd~  156 (344)
T 4gqb_B           91 VGERGILVASDS------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI--------CIKVWDL  156 (344)
T ss_dssp             ETTTEEEEEETT------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS--------CEEEEET
T ss_pred             eCCCeEEEEECC------CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC--------eEEEEEC
Confidence            344445566543      348888988765322111100 00111123333 3667777777543        4678898


Q ss_pred             CCCc
Q 016328          198 ETKK  201 (391)
Q Consensus       198 ~~~~  201 (391)
                      .+.+
T Consensus       157 ~~~~  160 (344)
T 4gqb_B          157 AQQV  160 (344)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=91.13  E-value=3  Score=37.39  Aligned_cols=98  Identities=7%  Similarity=0.062  Sum_probs=48.7

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++. ++.|+.+      ..+.+||+.+.+-...  +... ...-.+++. .++.+++.|+.++        .+..||..+
T Consensus       154 ~~~-l~s~s~d------~~i~~wd~~~~~~~~~--~~~h-~~~v~~~~~~~~~~~l~sg~~d~--------~v~~wd~~~  215 (340)
T 1got_B          154 DNQ-IVTSSGD------TTCALWDIETGQQTTT--FTGH-TGDVMSLSLAPDTRLFVSGACDA--------SAKLWDVRE  215 (340)
T ss_dssp             TTE-EEEEETT------SCEEEEETTTTEEEEE--ECCC-SSCEEEEEECTTSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCc-EEEEECC------CcEEEEECCCCcEEEE--EcCC-CCceEEEEECCCCCEEEEEeCCC--------cEEEEECCC
Confidence            455 4555543      3488899887654332  2111 111223333 3567778887643        466788876


Q ss_pred             CceEECCCCCC-CCCCceEEE-ECCEEEEEccCCCCccCCCccceE
Q 016328          200 KKWQDLPPLPV-PRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       200 ~~W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      ..-...  +.. ...-.+++. -++++++.|+.++     .+..|+
T Consensus       216 ~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d~-----~v~iwd  254 (340)
T 1got_B          216 GMCRQT--FTGHESDINAICFFPNGNAFATGSDDA-----TCRLFD  254 (340)
T ss_dssp             CSEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             CeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcCCC-----cEEEEE
Confidence            542211  111 111112222 2567777777543     355665

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=90.98  E-value=2.8  Score=36.90  Aligned_cols=101  Identities=12%  Similarity=0.154  Sum_probs=49.8

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++..++.|+.+      ..+.+||..+.+-...-....  ..........++++++.|+.+        ..+..||..+.
T Consensus        24 ~~~~l~s~~~d------g~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~s~d--------~~i~vwd~~~~   87 (304)
T 2ynn_A           24 TEPWVLTTLYS------GRVELWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDD--------FRIRVFNYNTG   87 (304)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETT--------SEEEEEETTTC
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCceeEEeeccC--CcEEEEEEeCCCCEEEEECCC--------CEEEEEECCCC
Confidence            45666777654      348888987765332111111  111122223355666777653        45678888776


Q ss_pred             ceEECCCCC-CCCCCceEEE-ECCEEEEEccCCCCccCCCccceEe
Q 016328          201 KWQDLPPLP-VPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       201 ~W~~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      +-..  .+. ....-.+++. -++++++.|+.+.     .+..|++
T Consensus        88 ~~~~--~~~~h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~  126 (304)
T 2ynn_A           88 EKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNW  126 (304)
T ss_dssp             CEEE--EEECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEG
T ss_pred             cEEE--EEeCCCCcEEEEEEcCCCCEEEEECCCC-----eEEEEEC
Confidence            4221  111 1111122222 2456677776543     4666764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=90.95  E-value=9  Score=34.79  Aligned_cols=101  Identities=7%  Similarity=0.051  Sum_probs=48.7

Q ss_pred             EEEEEeccCCCCCCcceeEEEECCCCCeeeCC--CCCCCCCcceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF--DMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       123 ~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      ..++.|+.+      ..+.+||+.+.+-...-  ..+......-.+++.  .++.+++.|+.++        .+..||+.
T Consensus       171 ~~l~s~s~D------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--------~v~~wd~~  236 (380)
T 3iz6_a          171 TRLITGSGD------QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--------TVRLWDLR  236 (380)
T ss_dssp             SCEEEECTT------SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--------CEEEEETT
T ss_pred             CEEEEECCC------CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC--------eEEEEECC
Confidence            445566543      34788998887644321  122111111223333  2667888888654        45678875


Q ss_pred             CCc--eEECCCCCCCCCCceEEE-ECCEEEEEccCCCCccCCCccceEe
Q 016328          199 TKK--WQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       199 ~~~--W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ...  -..+..  ....-.+++. -+++.++.|+.++     .+..|++
T Consensus       237 ~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~  278 (380)
T 3iz6_a          237 ITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDDG-----TCRLFDM  278 (380)
T ss_dssp             TTCCCCEEECC--CSSCCCEEEECTTSSEEEEECSSS-----CEEEEET
T ss_pred             CCCcceEEECC--cCCCeEEEEEecCCCeEEEEcCCC-----eEEEEEC
Confidence            321  111111  1111122222 2566777777643     3566653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=90.82  E-value=1.1  Score=41.83  Aligned_cols=103  Identities=12%  Similarity=0.018  Sum_probs=55.6

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      ++.+++.|+.++      .+.+||..+.+-...-.+... ...-.+++.  .++.+++.|+.++        .+..||.+
T Consensus       131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~p~~~~~l~s~s~D~--------~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIKGIGA-GGSITGLKFNPLNTNQFYASSMEG--------TTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS------CEEEECSSCCSCCEEECCCSS-SCCCCEEEECSSCTTEEEEECSSS--------CEEEEETT
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCCceeEEEccCC-CCCEEEEEEeCCCCCEEEEEeCCC--------EEEEeecc
Confidence            456788887653      488889887764443222211 111223444  3566777777654        46678988


Q ss_pred             CCceEECCCCCC-CCCCceEE-EECCEEEEEccCCCCccCCCccceE
Q 016328          199 TKKWQDLPPLPV-PRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       199 ~~~W~~~~~~~~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      ++....+..... .....++. .-++++++.|+.++     .+..|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd  237 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG-----NVILLN  237 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEE
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC-----cEeeec
Confidence            776554432221 11122233 34667788887543     345555

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.79  E-value=3.5  Score=36.35  Aligned_cols=64  Identities=8%  Similarity=-0.007  Sum_probs=41.2

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      .+.+|+....+      ..+.+||+.+++....-..+.  . .. .++.  .+..+|+.+..        ...++.+|+.
T Consensus         9 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~--~-~~-~~~~s~dg~~l~~~~~~--------~~~i~~~d~~   70 (331)
T 3u4y_A            9 SNFGIVVEQHL------RRISFFSTDTLEILNQITLGY--D-FV-DTAITSDCSNVVVTSDF--------CQTLVQIETQ   70 (331)
T ss_dssp             CCEEEEEEGGG------TEEEEEETTTCCEEEEEECCC--C-EE-EEEECSSSCEEEEEEST--------TCEEEEEECS
T ss_pred             CCEEEEEecCC------CeEEEEeCcccceeeeEEccC--C-cc-eEEEcCCCCEEEEEeCC--------CCeEEEEECC
Confidence            46788887643      469999999988866433332  1 12 3333  23468877642        3578999998


Q ss_pred             CCce
Q 016328          199 TKKW  202 (391)
Q Consensus       199 ~~~W  202 (391)
                      +.+-
T Consensus        71 ~~~~   74 (331)
T 3u4y_A           71 LEPP   74 (331)
T ss_dssp             SSSC
T ss_pred             CCce
Confidence            8774

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=90.69  E-value=6.4  Score=40.02  Aligned_cols=68  Identities=21%  Similarity=0.170  Sum_probs=41.3

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++.|++ |..      ..-+.+||+.+++++.......+ ...-.+++.. ++.||+..          ..-+.+||+.+
T Consensus       417 ~g~lWi-gt~------~~Gl~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~~g~lwigt----------~~Gl~~~~~~~  478 (781)
T 3v9f_A          417 EGNLWF-GTY------LGNISYYNTRLKKFQIIELEKNE-LLDVRVFYEDKNKKIWIGT----------HAGVFVIDLAS  478 (781)
T ss_dssp             TSCEEE-EET------TEEEEEECSSSCEEEECCSTTTC-CCCEEEEEECTTSEEEEEE----------TTEEEEEESSS
T ss_pred             CCCEEE-Eec------cCCEEEEcCCCCcEEEeccCCCC-CCeEEEEEECCCCCEEEEE----------CCceEEEeCCC
Confidence            457777 321      13488999999998876532111 1122233333 57888752          24578999999


Q ss_pred             CceEECC
Q 016328          200 KKWQDLP  206 (391)
Q Consensus       200 ~~W~~~~  206 (391)
                      .+|+...
T Consensus       479 ~~~~~~~  485 (781)
T 3v9f_A          479 KKVIHHY  485 (781)
T ss_dssp             SSCCEEE
T ss_pred             CeEEecc
Confidence            8887654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=90.61  E-value=7  Score=35.76  Aligned_cols=82  Identities=9%  Similarity=0.029  Sum_probs=44.9

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCce
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA  216 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~  216 (391)
                      ..+.+||..+.+.........  ...-.+++.. ++.++++|+.+        ..+..||..+.+-...  +......-.
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~~~~~~~v~  180 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDE--STYVASVKWSHDGSFLSVGLGN--------GLVDIYDVESQTKLRT--MAGHQARVG  180 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCT--TCCEEEEEECTTSSEEEEEETT--------SCEEEEETTTCCEEEE--ECCCSSCEE
T ss_pred             CeEEEeeCCCCcEeEeeecCC--CCCEEEEEECCCCCEEEEECCC--------CeEEEEECcCCeEEEE--ecCCCCceE
Confidence            358899999887766544332  1222333333 56677777653        3567889887653322  111122223


Q ss_pred             EEEECCEEEEEccCC
Q 016328          217 TQLWRGRLHVMGGSG  231 (391)
Q Consensus       217 ~~~~~~~iyv~GG~~  231 (391)
                      +...++.+++.|+.+
T Consensus       181 ~~~~~~~~l~~~~~d  195 (401)
T 4aez_A          181 CLSWNRHVLSSGSRS  195 (401)
T ss_dssp             EEEEETTEEEEEETT
T ss_pred             EEEECCCEEEEEcCC
Confidence            334466677777654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=90.60  E-value=6.7  Score=35.42  Aligned_cols=94  Identities=10%  Similarity=0.008  Sum_probs=52.1

Q ss_pred             EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       123 ~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      .+++.|+.+      ..+.+||..+.+....-..... ...-.+++..  ++.+++.|+.+        ..+..||..+.
T Consensus        87 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKG------GDIILWDYDVQNKTSFIQGMGP-GDAITGMKFNQFNTNQLFVSSIR--------GATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBT------SCEEEEETTSTTCEEEECCCST-TCBEEEEEEETTEEEEEEEEETT--------TEEEEEETTSC
T ss_pred             CEEEEEcCC------CeEEEEeCCCcccceeeecCCc-CCceeEEEeCCCCCCEEEEEeCC--------CEEEEEECCCC
Confidence            577777764      3488999998877664333211 1222344444  44677777653        45778999876


Q ss_pred             ceEECCCCCCC-CCCceEE-EECCEEEEEccCC
Q 016328          201 KWQDLPPLPVP-RYAPATQ-LWRGRLHVMGGSG  231 (391)
Q Consensus       201 ~W~~~~~~~~~-r~~~~~~-~~~~~iyv~GG~~  231 (391)
                      ....+...... ....+++ .-++++++.|+.+
T Consensus       152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  184 (383)
T 3ei3_B          152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST  184 (383)
T ss_dssp             EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC
Confidence            66555432211 1112222 2356677777654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.28  E-value=13  Score=35.71  Aligned_cols=58  Identities=9%  Similarity=-0.103  Sum_probs=30.8

Q ss_pred             CEEEEEeCc-cCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE--CCEEEEEccCCCCccCCCccceE
Q 016328          172 RYIYVVTGQ-YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       172 ~~iyv~GG~-~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      +.+++.|+. +        ..+..||..+.+... ..+......-....+  ++++++.|+.++     .+..|+
T Consensus       456 ~~~l~~~~~~d--------~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~i~iw~  516 (615)
T 1pgu_A          456 QNYVAVGLEEG--------NTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMG-----KILLYD  516 (615)
T ss_dssp             SSEEEEEETTT--------SCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             CCEEEEeecCC--------CeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCC-----eEEEee
Confidence            555666653 3        347789988776543 222222222222222  677788877543     355565

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=90.27  E-value=1.9  Score=39.22  Aligned_cols=70  Identities=13%  Similarity=0.097  Sum_probs=37.7

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCC----------CCCCCCcceEEEEEe--CCEEEEEeCccCCCCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFD----------MPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGP  188 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~----------~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~  188 (391)
                      ++.+++.|+.+      ..+.+||..+.+......          .+......-.+++..  ++.+++.|+.+       
T Consensus        55 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------  121 (408)
T 4a11_B           55 EGRYMLSGGSD------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD-------  121 (408)
T ss_dssp             TCCEEEEEETT------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT-------
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC-------
Confidence            56777777764      248888888765433211          000011122233333  45567777643       


Q ss_pred             cceeEEEeCCCCceEE
Q 016328          189 TAHTFVLDTETKKWQD  204 (391)
Q Consensus       189 ~~~~~~yd~~~~~W~~  204 (391)
                       ..+..||..+.+-..
T Consensus       122 -~~i~iwd~~~~~~~~  136 (408)
T 4a11_B          122 -KTLKVWDTNTLQTAD  136 (408)
T ss_dssp             -SEEEEEETTTTEEEE
T ss_pred             -CeEEEeeCCCCccce
Confidence             457788888765433

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=89.95  E-value=14  Score=36.72  Aligned_cols=104  Identities=14%  Similarity=0.028  Sum_probs=47.1

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CC--EEEEEeCccCCCCCCCcceeEEEeC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GR--YIYVVTGQYGPQCRGPTAHTFVLDT  197 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~--~iyv~GG~~~~~~~~~~~~~~~yd~  197 (391)
                      ++..++.|+.+      ..+.++|.....=..+..........-.+++.. ++  .+++.|+.+        ..+..||.
T Consensus       483 ~~~~l~s~s~D------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--------~~v~vwd~  548 (694)
T 3dm0_A          483 DNRQIVSASRD------RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD--------KTVKVWNL  548 (694)
T ss_dssp             TSSCEEEEETT------SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT--------SCEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC--------CeEEEEEC
Confidence            45666677654      236777765442222211111101111233332 22  456666653        34677888


Q ss_pred             CCCceEECCCCCCCCCCceEEE-ECCEEEEEccCCCCccCCCccceEe
Q 016328          198 ETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       198 ~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      .+.+-...-.-... .-.+++. -++++++.|+.++     .+..|++
T Consensus       549 ~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg-----~i~iwd~  590 (694)
T 3dm0_A          549 SNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDG-----VVLLWDL  590 (694)
T ss_dssp             TTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTS-----BCEEEET
T ss_pred             CCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCC-----eEEEEEC
Confidence            76553321111111 1112222 3567788877643     3566663

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=89.94  E-value=8.6  Score=32.96  Aligned_cols=170  Identities=10%  Similarity=0.038  Sum_probs=80.1

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      ++.+|+.....+     .+.+||+....  ..+|. ......++.....+...-.......+..+|+ +.+.........
T Consensus        67 ~g~l~v~~~~~~-----~i~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  139 (299)
T 2z2n_A           67 DGEVWFTENAAN-----KIGRITKKGIIKEYTLPN-PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK  139 (299)
T ss_dssp             TSCEEEEETTTT-----EEEEECTTSCEEEEECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             CCCEEEeCCCCC-----eEEEECCCCcEEEEeCCC-cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence            567777754222     57788886332  33332 1111223322211211111111235677887 555443321111


Q ss_pred             CccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCC
Q 016328          111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGP  188 (391)
Q Consensus       111 ~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~  188 (391)
                      ...-..++.. ++++|+..-.      ...+.+||+ +.+..... ++... ....+++.. ++.||+....        
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~-~~~~~i~~~~~g~l~v~~~~--------  202 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFK-IPTPA-SGPVGITKGNDDALWFVEII--------  202 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSSTT-CCEEEEEECTTSSEEEEETT--------
T ss_pred             CCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEee-CCCCC-CcceeEEECCCCCEEEEccC--------
Confidence            1112233333 4688886521      245889999 77766531 22211 122344443 5678887431        


Q ss_pred             cceeEEEeCCCCceEECCCCCCCCCC-ceEEE-ECCEEEEEc
Q 016328          189 TAHTFVLDTETKKWQDLPPLPVPRYA-PATQL-WRGRLHVMG  228 (391)
Q Consensus       189 ~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~G  228 (391)
                      ...+.+||+ +.+..... ++..... .+++. -+++||+..
T Consensus       203 ~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          203 GNKIGRITT-SGEITEFK-IPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CceEEEECC-CCcEEEEE-CCCCCCCceeEEECCCCCEEEec
Confidence            357889999 77766542 1211112 23333 256788874

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=89.71  E-value=14  Score=37.47  Aligned_cols=59  Identities=7%  Similarity=0.115  Sum_probs=36.1

Q ss_pred             eeEEEECCCCCeeeCCCCCCCCC-cceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          139 HVDIYNFTDNTWGGRFDMPREMA-HSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~p~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      -+.+||+.+++++.........+ ..-.++... ++.||+-..          ..+.+||+++.+|+....
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~~~~~~~  488 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL----------SALVRFNPEQRSFTTIEK  488 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES----------SCEEEEETTTTEEEECCB
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec----------CceeEEeCCCCeEEEccc
Confidence            38899999988877543111011 112233332 567887532          347899999999988753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.65  E-value=11  Score=33.59  Aligned_cols=65  Identities=6%  Similarity=0.026  Sum_probs=38.1

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++..++.|+.+      ..+.+||+.+.+-........  ...-.+++. -++.+++.|+.+        ..+..||..+
T Consensus       138 ~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~--~~~i~~~~~~pdg~~lasg~~d--------g~i~iwd~~~  201 (343)
T 3lrv_A          138 NTEYFIWADNR------GTIGFQSYEDDSQYIVHSAKS--DVEYSSGVLHKDSLLLALYSPD--------GILDVYNLSS  201 (343)
T ss_dssp             -CCEEEEEETT------CCEEEEESSSSCEEEEECCCS--SCCCCEEEECTTSCEEEEECTT--------SCEEEEESSC
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCcEEEEEecCC--CCceEEEEECCCCCEEEEEcCC--------CEEEEEECCC
Confidence            45667777754      348889998776544322222  111223333 367788888754        3577899887


Q ss_pred             Cc
Q 016328          200 KK  201 (391)
Q Consensus       200 ~~  201 (391)
                      .+
T Consensus       202 ~~  203 (343)
T 3lrv_A          202 PD  203 (343)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=89.48  E-value=9.9  Score=33.00  Aligned_cols=98  Identities=9%  Similarity=0.092  Sum_probs=52.0

Q ss_pred             CCEEEEEeccCC-CCCCcceeEEEECCCCCeeeCCCCCC--CCCcceEEEEE-eC-CEEEEEeCccCCCCCCCcceeEEE
Q 016328          121 KNLLYVFAGYGS-IDYVHSHVDIYNFTDNTWGGRFDMPR--EMAHSHLGMVT-DG-RYIYVVTGQYGPQCRGPTAHTFVL  195 (391)
Q Consensus       121 ~~~vyv~GG~~~-~~~~~~~~~~yd~~~~~W~~~~~~p~--~~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~y  195 (391)
                      ++.+|+...... .......+.+||+.++++..+.. +.  +......+++. -+ ++||+...         ...+.+|
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~---------~~~l~~~   97 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADM---------RLGLLVV   97 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEET---------TTEEEEE
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEEC---------CCCEEEE
Confidence            567888721100 00012358999998888876532 10  00112234444 35 78998753         1368899


Q ss_pred             eCCCCceEEC-CCCCC--C-CCCceEEE-ECCEEEEEcc
Q 016328          196 DTETKKWQDL-PPLPV--P-RYAPATQL-WRGRLHVMGG  229 (391)
Q Consensus       196 d~~~~~W~~~-~~~~~--~-r~~~~~~~-~~~~iyv~GG  229 (391)
                      |++ .+...+ .....  + ..-..++. -+++||+...
T Consensus        98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  135 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP  135 (314)
T ss_dssp             ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC
T ss_pred             eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec
Confidence            998 777665 32211  1 11223333 3677887753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=89.40  E-value=9.5  Score=32.70  Aligned_cols=118  Identities=11%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             ccccccccccCceEEccCCCCCccC-ceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEE
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLD-GAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~  167 (391)
                      ..+..||+. .+..... ++..... ++++.- ++.+|+....      ...+.+||+. +++.... ++.. .....++
T Consensus        41 ~~v~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~~-~~~~-~~~~~~i  109 (300)
T 2qc5_A           41 NKISSLDQS-GRIKEFE-VPTPDAKVMCLIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEYP-LPQP-DSGPYGI  109 (300)
T ss_dssp             TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEE-CSST-TCCEEEE
T ss_pred             CeEEEECCC-CceEEEE-CCCCCCcceeEEECCCCCEEEEecC------CCeEEEECCC-CCeEEec-CCCC-CCCCccc
Confidence            356777877 5555432 2221122 223322 4678887532      2358899988 6665432 2211 1223444


Q ss_pred             EEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCC-CCCceEEE-ECCEEEEEc
Q 016328          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVP-RYAPATQL-WRGRLHVMG  228 (391)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~-~~~~iyv~G  228 (391)
                      +.. ++.+|+....        ...+.+||+. .+..... ++.. ..-..++. -+++||+..
T Consensus       110 ~~~~~g~l~v~~~~--------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~  163 (300)
T 2qc5_A          110 TEGLNGDIWFTQLN--------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTE  163 (300)
T ss_dssp             EECSTTCEEEEETT--------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             eECCCCCEEEEccC--------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEe
Confidence            443 6789987532        3568889987 5554332 2211 11223333 356788764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=89.40  E-value=4.3  Score=35.82  Aligned_cols=93  Identities=11%  Similarity=0.058  Sum_probs=47.9

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCC----eeeCCCCCCCCCcceEEEEE-eCCE-EEEEeCccCCCCCCCcceeEE
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNT----WGGRFDMPREMAHSHLGMVT-DGRY-IYVVTGQYGPQCRGPTAHTFV  194 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~  194 (391)
                      ++..+++|+.+      ..+.+||..+.+    -......    ...-.+++. -++. +++.|+.+        ..+..
T Consensus        22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d--------g~i~~   83 (342)
T 1yfq_A           22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLRY----KHPLLCCNFIDNTDLQIYVGTVQ--------GEILK   83 (342)
T ss_dssp             GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEEC----SSCEEEEEEEESSSEEEEEEETT--------SCEEE
T ss_pred             CCCEEEEEcCC------CeEEEEEeCCCCccccceeeeec----CCceEEEEECCCCCcEEEEEcCC--------CeEEE
Confidence            44556666543      347788877665    3322211    111223333 3566 66777653        45788


Q ss_pred             EeC-CCCceEECCCCCCCCCCceEEEECCEEEEEccCC
Q 016328          195 LDT-ETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSG  231 (391)
Q Consensus       195 yd~-~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~  231 (391)
                      ||. .+.+-..+...+....-.+++...+.+++.|+.+
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d  121 (342)
T 1yfq_A           84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD  121 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT
T ss_pred             EEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC
Confidence            998 8877665544212222223333335566666654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=89.21  E-value=9.2  Score=33.09  Aligned_cols=11  Identities=18%  Similarity=0.271  Sum_probs=9.4

Q ss_pred             eEeeecCCCCe
Q 016328           50 IASNWSPYHNS   60 (391)
Q Consensus        50 ~~~~~d~~~~~   60 (391)
                      ++..||.++++
T Consensus        46 tV~iWd~~tg~   56 (318)
T 4ggc_A           46 SVYLWSASSGD   56 (318)
T ss_dssp             EEEEEETTTCC
T ss_pred             EEEEEECCCCC
Confidence            68889999887

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=89.03  E-value=7.5  Score=34.23  Aligned_cols=153  Identities=8%  Similarity=-0.032  Sum_probs=69.5

Q ss_pred             ecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccCC
Q 016328           32 VADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAA  108 (391)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~  108 (391)
                      .++.+|+.++.++     .+..||+.+++  ..++........+......+ ...........+..+|+.+.+-...-..
T Consensus         9 ~~~~~~v~~~~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            9 AGHEYMIVTNYPN-----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             TTCEEEEEEETTT-----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             CCCEEEEEeCCCC-----eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            3678888887544     78899999887  33332110011222222111 1111111234677888776654322222


Q ss_pred             CC-----CccCceEEEE-CC-EEEEEecc---CCCCC--CcceeEEEECCCCCeee-CCCCCCCCCcceEEEEE-eCCEE
Q 016328          109 PV-----PRLDGAAIQI-KN-LLYVFAGY---GSIDY--VHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVT-DGRYI  174 (391)
Q Consensus       109 p~-----~r~~~~~~~~-~~-~vyv~GG~---~~~~~--~~~~~~~yd~~~~~W~~-~~~~p~~~~r~~~~~~~-~~~~i  174 (391)
                      +.     ...-..++.. ++ .+|+.+..   .....  ....+.+||+.+++-.. +...+.+  +...+++. -++++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGSL  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSCE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCCcE
Confidence            21     1111233332 33 66665421   00000  02468999988743221 1111111  11222333 35567


Q ss_pred             EEEeCccCCCCCCCcceeEEEeCCCCce
Q 016328          175 YVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (391)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (391)
                      |+.+           .++.++|+.+.+-
T Consensus       162 ~~~~-----------~~i~~~d~~~~~~  178 (349)
T 1jmx_B          162 YVAG-----------PDIYKMDVKTGKY  178 (349)
T ss_dssp             EEES-----------SSEEEECTTTCCE
T ss_pred             EEcc-----------CcEEEEeCCCCce
Confidence            7742           2277888877653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.87  E-value=3.5  Score=37.35  Aligned_cols=128  Identities=13%  Similarity=0.045  Sum_probs=61.5

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE--CCE-EEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNL-LYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~  167 (391)
                      .++.+|..+.+...+..  ...........  ++. |+.... .........++.+|..+.+++.+.. ..+ .......
T Consensus       169 ~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~-~~~~~~~  243 (396)
T 3c5m_A          169 RLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAE-GESCTHE  243 (396)
T ss_dssp             EEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCT-TEEEEEE
T ss_pred             eEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCC-Cccccce
Confidence            46667776666555432  11111222222  243 444432 2221122469999998888877654 211 1111222


Q ss_pred             EE-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEEcc
Q 016328          168 VT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG  229 (391)
Q Consensus       168 ~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG  229 (391)
                      +. -+++.+++.......   ....++++|+.+.+.+.+...+.  .. .+..- +++++++.+
T Consensus       244 ~~spdg~~l~~~~~~~~~---~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQ---TDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             EECTTSSCEEEEEEETTT---CCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEE
T ss_pred             EECCCCCEEEEEecCCCC---ccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEec
Confidence            33 244433333322211   12459999999888776654432  11 22233 677666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=88.76  E-value=11  Score=32.42  Aligned_cols=175  Identities=7%  Similarity=0.030  Sum_probs=82.6

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVP  111 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~  111 (391)
                      ++.+|+.+...    -..+..||+.... ..+.........++++...+...-.......+..||+.......+......
T Consensus        88 ~g~l~v~~~~~----~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~  163 (286)
T 1q7f_A           88 SGDIIVTERSP----THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHL  163 (286)
T ss_dssp             TTEEEEEECGG----GCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTC
T ss_pred             CCeEEEEcCCC----CCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCcc
Confidence            67888886321    2357888865444 333321111122333322221111111223577788655433333211110


Q ss_pred             ccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCc
Q 016328          112 RLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPT  189 (391)
Q Consensus       112 r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  189 (391)
                      ..-.+++.- ++++||....      ...+.+||+..+....+..-..  .....++++ -+++|||....        .
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g~--~~~p~~i~~d~~G~l~v~~~~--------~  227 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGI--TNYPIGVGINSNGEILIADNH--------N  227 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTT--SCSEEEEEECTTCCEEEEECS--------S
T ss_pred             CCcEEEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCCc--cCCCcEEEECCCCCEEEEeCC--------C
Confidence            111222222 4689987643      2458999987654444322110  112234444 36789988642        2


Q ss_pred             c-eeEEEeCCCCceEECC-CCCCCCCCceEEE-ECCEEEEEc
Q 016328          190 A-HTFVLDTETKKWQDLP-PLPVPRYAPATQL-WRGRLHVMG  228 (391)
Q Consensus       190 ~-~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~-~~~~iyv~G  228 (391)
                      + .+.+||+....-..+. ...... -.+++. -+++|||..
T Consensus       228 ~~~i~~~~~~g~~~~~~~~~~~~~~-~~~i~~~~~g~l~vs~  268 (286)
T 1q7f_A          228 NFNLTIFTQDGQLISALESKVKHAQ-CFDVALMDDGSVVLAS  268 (286)
T ss_dssp             SCEEEEECTTSCEEEEEEESSCCSC-EEEEEEETTTEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEcccCCCCc-ceeEEECCCCcEEEEC
Confidence            3 7889998765433332 111111 123333 367888884

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=88.74  E-value=11  Score=32.67  Aligned_cols=171  Identities=9%  Similarity=-0.084  Sum_probs=83.2

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccC-ceEEccCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPEL-KWEKMKAA  108 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~-~W~~~~~~  108 (391)
                      .+.+++.|..++     .+..||+++++  ..++.......+.+.....+ ...+   ....+..+|+... .|+.-.+ 
T Consensus         4 ~~~~lv~~~~~~-----~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs---~~~~V~~~d~~G~~~W~~~~~-   74 (276)
T 3no2_A            4 PQHLLVGGSGWN-----KIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS---YSKGAKMITRDGRELWNIAAP-   74 (276)
T ss_dssp             CCEEEEECTTCS-----EEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE---CBSEEEEECTTSCEEEEEECC-
T ss_pred             CCcEEEeeCCCC-----EEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe---CCCCEEEECCCCCEEEEEcCC-
Confidence            356677776443     67889998888  55554221122333333333 1111   1346788888322 5764331 


Q ss_pred             CCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCC-eeeC--CCCCCCCCcceEEEEEeCCEEEEEeCccCCC
Q 016328          109 PVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGR--FDMPREMAHSHLGMVTDGRYIYVVTGQYGPQ  184 (391)
Q Consensus       109 p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~--~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~  184 (391)
                       .....+++..+ ++++++....+     ...+..+|++.+. |+.-  ...+.+...........++.+++....    
T Consensus        75 -~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~----  144 (276)
T 3no2_A           75 -AGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA----  144 (276)
T ss_dssp             -TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----
T ss_pred             -CCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----
Confidence             11112333333 56666654321     1347788875542 4431  111111111122233446666665431    


Q ss_pred             CCCCcceeEEEeCCCC-ceEECCCCCCCCCCceEE-EECCEEEEEccC
Q 016328          185 CRGPTAHTFVLDTETK-KWQDLPPLPVPRYAPATQ-LWRGRLHVMGGS  230 (391)
Q Consensus       185 ~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~  230 (391)
                          ...+.+||++-+ .|+.-.+.    ..+++. ..++.++|.+..
T Consensus       145 ----~~~v~~~d~~G~~~w~~~~~~----~~~~~~~~~~g~~~v~~~~  184 (276)
T 3no2_A          145 ----TSEVREIAPNGQLLNSVKLSG----TPFSSAFLDNGDCLVACGD  184 (276)
T ss_dssp             ----TTEEEEECTTSCEEEEEECSS----CCCEEEECTTSCEEEECBT
T ss_pred             ----CCEEEEECCCCCEEEEEECCC----CccceeEcCCCCEEEEeCC
Confidence                356889998733 36654321    122333 346788877653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=88.73  E-value=7.8  Score=34.88  Aligned_cols=99  Identities=10%  Similarity=0.063  Sum_probs=48.4

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe---CCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD---GRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      +..++.|+.+      ..+.+||+.+.+-...-.-+.  .. -.++...   ++.+++.|+.++        .+..||+.
T Consensus       166 ~~~l~t~s~D------~~v~lwd~~~~~~~~~~~~h~--~~-v~~~~~~~~~~g~~l~sgs~Dg--------~v~~wd~~  228 (354)
T 2pbi_B          166 DMQILTASGD------GTCALWDVESGQLLQSFHGHG--AD-VLCLDLAPSETGNTFVSGGCDK--------KAMVWDMR  228 (354)
T ss_dssp             SSEEEEEETT------SEEEEEETTTCCEEEEEECCS--SC-EEEEEECCCSSCCEEEEEETTS--------CEEEEETT
T ss_pred             CCEEEEEeCC------CcEEEEeCCCCeEEEEEcCCC--CC-eEEEEEEeCCCCCEEEEEeCCC--------eEEEEECC
Confidence            4445555543      358889988776433111111  11 1122221   356777887643        46788988


Q ss_pred             CCceEECCCCCCCCCCceEEE-ECCEEEEEccCCCCccCCCccceE
Q 016328          199 TKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       199 ~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      +.+....-.... ..-.+++. -++.+++.|+.++     .+..|+
T Consensus       229 ~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd  268 (354)
T 2pbi_B          229 SGQCVQAFETHE-SDVNSVRYYPSGDAFASGSDDA-----TCRLYD  268 (354)
T ss_dssp             TCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             CCcEEEEecCCC-CCeEEEEEeCCCCEEEEEeCCC-----eEEEEE
Confidence            766432211111 11112222 2566777777543     355665

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=88.66  E-value=5.5  Score=35.25  Aligned_cols=62  Identities=13%  Similarity=0.089  Sum_probs=32.5

Q ss_pred             CEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEE-------eCCEEEEEeCccCCCCCCCccee
Q 016328          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVT-------DGRYIYVVTGQYGPQCRGPTAHT  192 (391)
Q Consensus       122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~~  192 (391)
                      +.+++.|+.+      ..+.+||..+.+  -..+.....    .-.++..       .++.+++.|+.+        ..+
T Consensus        80 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~s~~~~~l~~~~~d--------~~i  141 (357)
T 3i2n_A           80 QRYLATGDFG------GNLHIWNLEAPEMPVYSVKGHKE----IINAIDGIGGLGIGEGAPEIVTGSRD--------GTV  141 (357)
T ss_dssp             TCCEEEEETT------SCEEEECTTSCSSCSEEECCCSS----CEEEEEEESGGGCC-CCCEEEEEETT--------SCE
T ss_pred             CceEEEecCC------CeEEEEeCCCCCccEEEEEeccc----ceEEEeeccccccCCCccEEEEEeCC--------CeE
Confidence            3667777654      347888887765  111211111    1112221       245566777653        346


Q ss_pred             EEEeCCCCc
Q 016328          193 FVLDTETKK  201 (391)
Q Consensus       193 ~~yd~~~~~  201 (391)
                      ..||+.+..
T Consensus       142 ~vwd~~~~~  150 (357)
T 3i2n_A          142 KVWDPRQKD  150 (357)
T ss_dssp             EEECTTSCS
T ss_pred             EEEeCCCCC
Confidence            788887754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=88.54  E-value=19  Score=35.08  Aligned_cols=100  Identities=17%  Similarity=0.255  Sum_probs=58.4

Q ss_pred             ceEEEECCEEEEEeccCCCCCCcceeEEEEC-CCC--CeeeCCCCCCCC---C---cceEEEEEeCCEEEEEeCccCCCC
Q 016328          115 GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNF-TDN--TWGGRFDMPREM---A---HSHLGMVTDGRYIYVVTGQYGPQC  185 (391)
Q Consensus       115 ~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~-~~~--~W~~~~~~p~~~---~---r~~~~~~~~~~~iyv~GG~~~~~~  185 (391)
                      .+-++.++.||+....      ...++++|. .+.  .|+.-...+...   .   ....+.++.+++||+...      
T Consensus        56 ~~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------  123 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------  123 (571)
T ss_dssp             SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------
T ss_pred             cccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------
Confidence            3446679999998652      134899998 766  498743322100   0   011245678999998732      


Q ss_pred             CCCcceeEEEeCCCCc--eEEC-CCCCCC-CCCceEEEECCEEEEEcc
Q 016328          186 RGPTAHTFVLDTETKK--WQDL-PPLPVP-RYAPATQLWRGRLHVMGG  229 (391)
Q Consensus       186 ~~~~~~~~~yd~~~~~--W~~~-~~~~~~-r~~~~~~~~~~~iyv~GG  229 (391)
                         ...++.+|.++.+  |+.- ...+.. ....+-++.++++|+-.+
T Consensus       124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~  168 (571)
T 2ad6_A          124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCS  168 (571)
T ss_dssp             ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECB
T ss_pred             ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEec
Confidence               3568899998764  8753 221111 112233456888887643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=88.52  E-value=10  Score=32.65  Aligned_cols=63  Identities=8%  Similarity=0.032  Sum_probs=31.5

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++..++.|+.+      ..+.+||..... ........  ..........++. ++.|+.+        ..+..||..+.
T Consensus       154 ~~~~l~~~~~d------~~i~i~d~~~~~-~~~~~~~~--~~i~~~~~~~~~~-~~~~~~d--------g~i~i~d~~~~  215 (313)
T 3odt_A          154 SENKFLTASAD------KTIKLWQNDKVI-KTFSGIHN--DVVRHLAVVDDGH-FISCSND--------GLIKLVDMHTG  215 (313)
T ss_dssp             TTTEEEEEETT------SCEEEEETTEEE-EEECSSCS--SCEEEEEEEETTE-EEEEETT--------SEEEEEETTTC
T ss_pred             CCCEEEEEECC------CCEEEEecCceE-EEEeccCc--ccEEEEEEcCCCe-EEEccCC--------CeEEEEECCch
Confidence            56666676654      247778833221 11211111  1122223334666 6666543        45788898765


Q ss_pred             c
Q 016328          201 K  201 (391)
Q Consensus       201 ~  201 (391)
                      +
T Consensus       216 ~  216 (313)
T 3odt_A          216 D  216 (313)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.50  E-value=3.8  Score=36.30  Aligned_cols=150  Identities=7%  Similarity=-0.112  Sum_probs=70.7

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-eecCCCCCCCCceeeEeecC--ccccccc--ccccccccccccCceEEc-c
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKK--DVVPKRI--LPATFQDLPAPELKWEKM-K  106 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~--~~~~~~~--~~~~~~~~d~~~~~W~~~-~  106 (391)
                      ++.||+.+..++     .+..||+.+++ ..+.........+++....+  +......  ....+..+|+.+.....+ .
T Consensus        55 ~g~l~~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~  129 (333)
T 2dg1_A           55 QGQLFLLDVFEG-----NIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  129 (333)
T ss_dssp             TSCEEEEETTTC-----EEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             CCCEEEEECCCC-----EEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence            566787765332     67889998877 33321111111222221111  1111000  012577888877665422 2


Q ss_pred             CCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CC-EEEEEeCccCC
Q 016328          107 AAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GR-YIYVVTGQYGP  183 (391)
Q Consensus       107 ~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~-~iyv~GG~~~~  183 (391)
                      .......-..++.. ++++|+.............++++|+.+.+...+..-    .....+++.. ++ .||+....   
T Consensus       130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~dg~~l~v~~~~---  202 (333)
T 2dg1_A          130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----ISVANGIALSTDEKVLWVTETT---  202 (333)
T ss_dssp             SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----ESSEEEEEECTTSSEEEEEEGG---
T ss_pred             cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC----CCcccceEECCCCCEEEEEeCC---
Confidence            22111111222222 567887653221111234689999887776654211    0112233332 33 58876422   


Q ss_pred             CCCCCcceeEEEeCCC
Q 016328          184 QCRGPTAHTFVLDTET  199 (391)
Q Consensus       184 ~~~~~~~~~~~yd~~~  199 (391)
                           ...+++||+.+
T Consensus       203 -----~~~i~~~d~~~  213 (333)
T 2dg1_A          203 -----ANRLHRIALED  213 (333)
T ss_dssp             -----GTEEEEEEECT
T ss_pred             -----CCeEEEEEecC
Confidence                 35678888754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=87.92  E-value=22  Score=35.45  Aligned_cols=28  Identities=0%  Similarity=-0.378  Sum_probs=17.4

Q ss_pred             cCEEEEecCC-CCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSK-FTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~-~~~~~~~~~~~~d~~~~~   60 (391)
                      ++...++++. ++......+..||..+++
T Consensus        47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~   75 (741)
T 2ecf_A           47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQ   75 (741)
T ss_dssp             TSSEEEEEECCSSCTTEEEEEEEETTTCC
T ss_pred             CCCEEEEEeccCCCCcccEEEEEECCCCc
Confidence            4444444443 554445578999998877

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=87.65  E-value=16  Score=33.02  Aligned_cols=64  Identities=6%  Similarity=-0.122  Sum_probs=33.6

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++.++++|+.+      ..+.+||.....-..+....    ..-.+++.. ++..++.++.+        ..+..||..+
T Consensus       119 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~  180 (425)
T 1r5m_A          119 DGNSIVTGVEN------GELRLWNKTGALLNVLNFHR----APIVSVKWNKDGTHIISMDVE--------NVTILWNVIS  180 (425)
T ss_dssp             TSSEEEEEETT------SCEEEEETTSCEEEEECCCC----SCEEEEEECTTSSEEEEEETT--------CCEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeeeeccCCC----ccEEEEEECCCCCEEEEEecC--------CeEEEEECCC
Confidence            45667777654      24778884444333332211    112233332 45556666543        3467788876


Q ss_pred             Cce
Q 016328          200 KKW  202 (391)
Q Consensus       200 ~~W  202 (391)
                      .+-
T Consensus       181 ~~~  183 (425)
T 1r5m_A          181 GTV  183 (425)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.51  E-value=16  Score=32.85  Aligned_cols=63  Identities=2%  Similarity=-0.128  Sum_probs=35.2

Q ss_pred             ceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-e-CCE-EEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-D-GRY-IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~-~~~-iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      ..++++|+.+.+...+...+    ........ - ++. |+.... ....  .....++.+|+.+.+++.+..
T Consensus       168 ~~l~~~d~~~g~~~~~~~~~----~~~~~~~~sp~dg~~l~~~~~-~~~~--~~~~~l~~~d~~~~~~~~l~~  233 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQDT----AWLGHPIYRPFDDSTVGFCHE-GPHD--LVDARMWLVNEDGSNVRKIKE  233 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEES----SCEEEEEEETTEEEEEEEEEC-SCSS--SCSCCCEEEETTSCCCEESSC
T ss_pred             ceEEEEECCCCcEEeeccCC----cccccceECCCCCCEEEEEec-CCCC--CCCceEEEEECCCCceeEeec
Confidence            46899999988876654221    11122222 2 344 444432 1111  112578999998888777754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=87.19  E-value=13  Score=32.28  Aligned_cols=215  Identities=8%  Similarity=0.047  Sum_probs=100.6

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccCCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      ++.||++....     ..+.+||+.++. ..+...  ....+++....+ ...+   ....+..||+.+.+++.+...+.
T Consensus        24 ~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~dG~l~v~---~~~~l~~~d~~~g~~~~~~~~~~   93 (297)
T 3g4e_A           24 SNSLLFVDIPA-----KKVCRWDSFTKQVQRVTMD--APVSSVALRQSGGYVAT---IGTKFCALNWKEQSAVVLATVDN   93 (297)
T ss_dssp             TTEEEEEETTT-----TEEEEEETTTCCEEEEECS--SCEEEEEEBTTSSEEEE---ETTEEEEEETTTTEEEEEEECCT
T ss_pred             CCEEEEEECCC-----CEEEEEECCCCcEEEEeCC--CceEEEEECCCCCEEEE---ECCeEEEEECCCCcEEEEEecCC
Confidence            46777776533     368899998876 333221  111122222111 1111   12367888988888777654432


Q ss_pred             --CccCceEEEE--CCEEEEEeccCCC-----CCCcceeEEEECCCCCeeeC-CCCCCCCCcceEEEEEe--CCEEEEEe
Q 016328          111 --PRLDGAAIQI--KNLLYVFAGYGSI-----DYVHSHVDIYNFTDNTWGGR-FDMPREMAHSHLGMVTD--GRYIYVVT  178 (391)
Q Consensus       111 --~r~~~~~~~~--~~~vyv~GG~~~~-----~~~~~~~~~yd~~~~~W~~~-~~~p~~~~r~~~~~~~~--~~~iyv~G  178 (391)
                        +........+  ++++|+..-....     ......++++|+.. +...+ ..+..     ..+++..  +..||+..
T Consensus        94 ~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~-----pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           94 DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDI-----SNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESB-----EEEEEECTTSCEEEEEE
T ss_pred             CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccc-----ccceEEcCCCCEEEEec
Confidence              1111222223  5677774321111     11234688888753 33322 11111     2234443  44688875


Q ss_pred             CccCCCCCCCcceeEEEeC--CCCceEE---CCCCCCC-CCCceEEE-ECCEEEEEccCCCCccCCCccceEeeeecCCc
Q 016328          179 GQYGPQCRGPTAHTFVLDT--ETKKWQD---LPPLPVP-RYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKP  251 (391)
Q Consensus       179 G~~~~~~~~~~~~~~~yd~--~~~~W~~---~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~  251 (391)
                      ..        ...+++||.  ++.+...   +..++.. ..-..+++ -++.||+.....+     .       +..+|+
T Consensus       168 ~~--------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~-----~-------v~~~d~  227 (297)
T 3g4e_A          168 SL--------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG-----R-------VIRLDP  227 (297)
T ss_dssp             GG--------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT-----E-------EEEECT
T ss_pred             CC--------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC-----E-------EEEEcC
Confidence            32        356778875  4544321   1112111 11122333 3567887742211     1       222346


Q ss_pred             ccCCceeecCCCCCCcceeEEEEC----CEEEEEeCCC
Q 016328          252 LEKEWRTEIPIPRGGPHRACVVVD----DRLLVIGGQE  285 (391)
Q Consensus       252 ~~~~W~~~~~~p~~~~~~~~~~~~----~~i~v~GG~~  285 (391)
                      ++.+....-++|...  ..++.++    +.|||.....
T Consensus       228 ~tG~~~~~i~~p~~~--~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          228 VTGKRLQTVKLPVDK--TTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             TTCCEEEEEECSSSB--EEEEEEESGGGCEEEEEEBCT
T ss_pred             CCceEEEEEECCCCC--ceEEEEeCCCCCEEEEEcCCc
Confidence            655554444455332  3445553    4788876543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=86.45  E-value=12  Score=32.49  Aligned_cols=93  Identities=10%  Similarity=0.025  Sum_probs=46.9

Q ss_pred             cccccccccCceEEc-cCCCC--Ccc-CceEEEE-CCEEEEEeccCC---------CCCCcceeEEEECCCCCeeeCC-C
Q 016328           91 TFQDLPAPELKWEKM-KAAPV--PRL-DGAAIQI-KNLLYVFAGYGS---------IDYVHSHVDIYNFTDNTWGGRF-D  155 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~-~~~p~--~r~-~~~~~~~-~~~vyv~GG~~~---------~~~~~~~~~~yd~~~~~W~~~~-~  155 (391)
                      .+..||+. .+...+ .....  +.. -..++.. ++++|+....+.         .......+++||+. .+...+. .
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~  170 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA  170 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence            57778877 666555 32221  111 1223322 568888764321         11112468899987 5554431 1


Q ss_pred             CCCCCCcceEEEEEe-----CC-EEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          156 MPREMAHSHLGMVTD-----GR-YIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       156 ~p~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      +..     ...++..     ++ .||+....        ...+++||+.
T Consensus       171 ~~~-----~~~i~~~~~~d~dg~~l~v~~~~--------~~~i~~~~~~  206 (314)
T 1pjx_A          171 FQF-----PNGIAVRHMNDGRPYQLIVAETP--------TKKLWSYDIK  206 (314)
T ss_dssp             ESS-----EEEEEEEECTTSCEEEEEEEETT--------TTEEEEEEEE
T ss_pred             CCC-----cceEEEecccCCCCCEEEEEECC--------CCeEEEEECC
Confidence            111     1233333     33 57777432        3568888875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=86.41  E-value=26  Score=34.38  Aligned_cols=99  Identities=13%  Similarity=0.196  Sum_probs=55.9

Q ss_pred             ceEEEECCEEEEEeccCCCCCCcceeEEEEC-CCCC--eeeCCCCCCCC---C---cceEEEEE--eCCE----EEEEeC
Q 016328          115 GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNF-TDNT--WGGRFDMPREM---A---HSHLGMVT--DGRY----IYVVTG  179 (391)
Q Consensus       115 ~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~-~~~~--W~~~~~~p~~~---~---r~~~~~~~--~~~~----iyv~GG  179 (391)
                      .+-++.++.||+.+..      ...++++|. .+.+  |+.-...+...   .   ....+.++  .+++    ||+...
T Consensus        56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~  129 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL  129 (599)
T ss_dssp             SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred             eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence            3446679999998752      134899998 6664  88754332100   0   01123455  5777    887532


Q ss_pred             ccCCCCCCCcceeEEEeCCCCc--eEECCCCCCC--CCCceEEEECCEEEEEc
Q 016328          180 QYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVP--RYAPATQLWRGRLHVMG  228 (391)
Q Consensus       180 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~G  228 (391)
                               ...++.+|.++.+  |+.-..-+..  ....+-++.+++||+-.
T Consensus       130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~  173 (599)
T 1w6s_A          130 ---------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGS  173 (599)
T ss_dssp             ---------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECC
T ss_pred             ---------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEe
Confidence                     3568899988765  8753211111  11223345788887643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=86.34  E-value=4.1  Score=37.37  Aligned_cols=99  Identities=8%  Similarity=0.036  Sum_probs=51.2

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      +++.++.|+.+      ..+.+||..+.+-...  +... ...-.+++.. ++..++.|+.+        ..+..||..+
T Consensus       134 dg~~l~s~~~d------~~i~iwd~~~~~~~~~--~~~h-~~~v~~~~~~p~~~~l~s~s~d--------~~v~iwd~~~  196 (393)
T 1erj_A          134 DGKFLATGAED------RLIRIWDIENRKIVMI--LQGH-EQDIYSLDYFPSGDKLVSGSGD--------RTVRIWDLRT  196 (393)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEEE--ECCC-SSCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCcEEEE--EccC-CCCEEEEEEcCCCCEEEEecCC--------CcEEEEECCC
Confidence            56677777754      2488899887654332  1111 1112233332 45556666643        4577889887


Q ss_pred             CceEECCCCCCCCCCceEEEE--CCEEEEEccCCCCccCCCccceE
Q 016328          200 KKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      .+....-...  ....+++..  ++++++.|+.++     .+..|+
T Consensus       197 ~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd  235 (393)
T 1erj_A          197 GQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDR-----AVRVWD  235 (393)
T ss_dssp             TEEEEEEECS--SCEEEEEECSTTCCEEEEEETTS-----CEEEEE
T ss_pred             CeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCCC-----cEEEEE
Confidence            6543221111  111222222  567788877643     355565

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=86.27  E-value=4.5  Score=36.28  Aligned_cols=96  Identities=11%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCC--CCCceEEE-ECCEEEEEccCCCCccCCCccceEeeee
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVP--RYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~  247 (391)
                      ++++++.||.++        .+..||.++.+|.....+...  ..-.+++. -++++++.|+.+.     .+..|+.   
T Consensus        27 ~g~~las~~~D~--------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~---   90 (345)
T 3fm0_A           27 AGTLLASCGGDR--------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKK---   90 (345)
T ss_dssp             TSSCEEEEETTS--------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEE---
T ss_pred             CCCEEEEEcCCC--------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEc---
Confidence            667777777543        456778877777543222111  11122222 2567777777643     3556663   


Q ss_pred             cCCcccCCceeecCCCCCCcceeEEEE--CCEEEEEeCCCC
Q 016328          248 DGKPLEKEWRTEIPIPRGGPHRACVVV--DDRLLVIGGQEG  286 (391)
Q Consensus       248 ~~d~~~~~W~~~~~~p~~~~~~~~~~~--~~~i~v~GG~~~  286 (391)
                          .+..+..+..+..-.....++.+  ++++++.|+.++
T Consensus        91 ----~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~  127 (345)
T 3fm0_A           91 ----NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK  127 (345)
T ss_dssp             ----CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ----cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC
Confidence                23333333222211111123333  567777777653

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=85.84  E-value=14  Score=30.74  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=31.8

Q ss_pred             EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEE--C----CCCCCCCCCceEEEE--CCEEEEEccC
Q 016328          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD--L----PPLPVPRYAPATQLW--RGRLHVMGGS  230 (391)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~  230 (391)
                      +++..++++|+|=|          ..+|+++.....+..  +    +.+|.  .--++...  ++++|+|=|.
T Consensus        28 Ai~~~~g~~y~Fkg----------~~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG~   88 (207)
T 1pex_A           28 AITSLRGETMIFKD----------RFFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRGR   88 (207)
T ss_dssp             EEEEETTEEEEEET----------TEEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCcEEEEEC----------CEEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEccC
Confidence            45568999999954          457777765544322  1    23442  22233433  6899999764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=85.26  E-value=17  Score=32.62  Aligned_cols=65  Identities=9%  Similarity=0.076  Sum_probs=30.6

Q ss_pred             EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC--C-CCCCCCceEEE-ECCEEEEEccCCCCccCCCccc
Q 016328          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP--L-PVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDH  241 (391)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~-~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~  241 (391)
                      +++...+..++.|+.+        ..+..||..+.+-.....  + .....-.+++. -++++++.|+.++     .+..
T Consensus        87 ~~~~s~d~~l~~~s~d--------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~-----~i~i  153 (344)
T 4gqb_B           87 DLTWVGERGILVASDS--------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI-----CIKV  153 (344)
T ss_dssp             EEEEETTTEEEEEETT--------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEE
T ss_pred             EEEEeCCCeEEEEECC--------CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC-----eEEE
Confidence            3444444445566543        356778887654211110  0 01111112222 2667777777643     3666


Q ss_pred             eE
Q 016328          242 WS  243 (391)
Q Consensus       242 ~~  243 (391)
                      |+
T Consensus       154 wd  155 (344)
T 4gqb_B          154 WD  155 (344)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=85.21  E-value=32  Score=34.27  Aligned_cols=80  Identities=13%  Similarity=0.020  Sum_probs=46.7

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCC-CCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCccee
Q 016328          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFD-MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHT  192 (391)
Q Consensus       116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~-~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  192 (391)
                      +.++.+++||+...       ...+..+|..+.+  |+.-.. -+........+.++.++.||+..+.....   ....+
T Consensus       123 ~~a~~~~~v~v~~~-------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~---~~g~v  192 (677)
T 1kb0_A          123 GVALWKGKVYVGAW-------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYG---VRGYI  192 (677)
T ss_dssp             CCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTC---CBCEE
T ss_pred             CceEECCEEEEEcC-------CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccC---CCCEE
Confidence            34567889988642       2458999998775  887422 11100111223446788888754321111   14678


Q ss_pred             EEEeCCCCc--eEEC
Q 016328          193 FVLDTETKK--WQDL  205 (391)
Q Consensus       193 ~~yd~~~~~--W~~~  205 (391)
                      +.||.++.+  |+.-
T Consensus       193 ~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          193 TAYDAETGERKWRWF  207 (677)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEEEEec
Confidence            999998765  8754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=85.16  E-value=7.4  Score=39.64  Aligned_cols=94  Identities=9%  Similarity=-0.009  Sum_probs=51.7

Q ss_pred             cccccccccCceEEccCCCCCcc--C-ceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCC--CCCCC-cc
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRL--D-GAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM--PREMA-HS  163 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~--~-~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~~~-r~  163 (391)
                      -+..||+.+.+++..........  . .++... ++.|++...        .-+.+||+.+++|+.....  +.+.. ..
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQ  499 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCC
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCce
Confidence            46678888777766543111111  1 122221 457777542        1388999999999886432  11111 11


Q ss_pred             eEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCce
Q 016328          164 HLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (391)
Q Consensus       164 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (391)
                      -.++.. -++.||+...          .-+.+||+.++++
T Consensus       500 i~~i~~d~~g~lWigt~----------~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          500 ITTLFRDSHKRLWIGGE----------EGLSVFKQEGLDI  529 (795)
T ss_dssp             EEEEEECTTCCEEEEES----------SCEEEEEEETTEE
T ss_pred             EEEEEECCCCCEEEEeC----------CceEEEeCCCCeE
Confidence            122222 3577887532          2378899988887

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=84.86  E-value=9.3  Score=34.19  Aligned_cols=98  Identities=14%  Similarity=0.084  Sum_probs=46.7

Q ss_pred             EEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-e-CCEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328          124 LYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-D-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       124 vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (391)
                      .+.+|.+.....-.-.++.+|..+.+++.+.....  .... .++. - +..||+.+......   ..-.++.+|..+.+
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~--~~p~-~l~~spdg~~l~~~~~~~~~~---~~v~~~~~~~~~g~   88 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV--ANPS-YLIPSADGKFVYSVNEFSKDQ---AAVSAFAFDKEKGT   88 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC--SCCC-SEEECTTSSEEEEEECCSSTT---CEEEEEEEETTTTE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC--CCCc-eEEECCCCCEEEEEEccCCCC---CcEEEEEEeCCCCc
Confidence            34456665433222346667888888877544322  1111 2222 2 44577765432111   02344666766677


Q ss_pred             eEECCCCCCCCCC-ceEEEECCE-EEEEc
Q 016328          202 WQDLPPLPVPRYA-PATQLWRGR-LHVMG  228 (391)
Q Consensus       202 W~~~~~~~~~r~~-~~~~~~~~~-iyv~G  228 (391)
                      .+.+...+..... ..++. +++ ||+..
T Consensus        89 ~~~~~~~~~~~~~p~~~~~-dg~~l~~~~  116 (361)
T 3scy_A           89 LHLLNTQKTMGADPCYLTT-NGKNIVTAN  116 (361)
T ss_dssp             EEEEEEEECSSSCEEEEEE-CSSEEEEEE
T ss_pred             EEEeeEeccCCCCcEEEEE-CCCEEEEEE
Confidence            7766544322222 22233 554 66554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=84.83  E-value=16  Score=31.70  Aligned_cols=99  Identities=5%  Similarity=-0.095  Sum_probs=50.2

Q ss_pred             ccccccccccCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC--CCCcceEE
Q 016328           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR--EMAHSHLG  166 (391)
Q Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~~~r~~~~  166 (391)
                      ..+++||+.+.+-.... .+.  .-.+++.. ++++|+..        .+.+.+||+++++++.+...+.  +..+....
T Consensus        35 ~~i~~~d~~~~~~~~~~-~~~--~~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di  103 (297)
T 3g4e_A           35 KKVCRWDSFTKQVQRVT-MDA--PVSSVALRQSGGYVATI--------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDG  103 (297)
T ss_dssp             TEEEEEETTTCCEEEEE-CSS--CEEEEEEBTTSSEEEEE--------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEE
T ss_pred             CEEEEEECCCCcEEEEe-CCC--ceEEEEECCCCCEEEEE--------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCE
Confidence            36777887766543322 111  11122222 55666653        1358999999998877644322  11222222


Q ss_pred             EEEeCCEEEEEeCccCCC---CCCCcceeEEEeCCC
Q 016328          167 MVTDGRYIYVVTGQYGPQ---CRGPTAHTFVLDTET  199 (391)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~---~~~~~~~~~~yd~~~  199 (391)
                      .+.-+++||+..-.....   .......++++|+..
T Consensus       104 ~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g  139 (297)
T 3g4e_A          104 KVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH  139 (297)
T ss_dssp             EECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred             EECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence            333467888742111100   001246789999864

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=84.66  E-value=24  Score=35.19  Aligned_cols=174  Identities=11%  Similarity=0.050  Sum_probs=80.0

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECC-EEEEEeccCCC-------CCCcceeEEEECCCCCee--eCCCCCC-C
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSI-------DYVHSHVDIYNFTDNTWG--GRFDMPR-E  159 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~vyv~GG~~~~-------~~~~~~~~~yd~~~~~W~--~~~~~p~-~  159 (391)
                      .++.+|..+.+.... .++..+....+-. ++ .||.. -.+..       ......++++++.+.+=+  .+-..+. .
T Consensus       156 ~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~  232 (693)
T 3iuj_A          156 EIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYS-SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ  232 (693)
T ss_dssp             EEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEE-ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred             EEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEE-EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence            567778777775443 1121112222223 55 44443 33321       012345888888776432  1111111 0


Q ss_pred             CCcceEEEE-EeCCE-EEEEeCccCCCCCCCcceeEEEeCCCC--ceEECCCCCCCCCCceEEEECCEEEEEccCCCCcc
Q 016328          160 MAHSHLGMV-TDGRY-IYVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRY  235 (391)
Q Consensus       160 ~~r~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~  235 (391)
                       +.....+. .-+++ |++.... +..    .++++.+|..+.  .|+.+.+-..... ......+++||+....+.   
T Consensus       233 -~~~~~~~~~SpDg~~l~~~~~~-~~~----~~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~---  302 (693)
T 3iuj_A          233 -HHRYVGATVTEDDRFLLISAAN-STS----GNRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDA---  302 (693)
T ss_dssp             -CCSEEEEEECTTSCEEEEEEES-SSS----CCEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC---
T ss_pred             -CeEEEEEEEcCCCCEEEEEEcc-CCC----CcEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEEEEEECCCC---
Confidence             11122222 23454 4443222 111    368999998765  6776643222211 123456888998865432   


Q ss_pred             CCCccceEeeeecCC-cccCCceeecCCCCCCcceeEEEECCEEEEEeC
Q 016328          236 TPEVDHWSLAVKDGK-PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGG  283 (391)
Q Consensus       236 ~~~~~~~~~~~~~~d-~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG  283 (391)
                          ..+.+...+.+ +....|+.+.+-.....  .....++.|++..-
T Consensus       303 ----~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          303 ----PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             ----TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             ----CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence                11222222222 23346887654333322  44555677666543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=84.29  E-value=24  Score=32.15  Aligned_cols=100  Identities=11%  Similarity=0.101  Sum_probs=55.8

Q ss_pred             cccccccccCceEEccCC---CCC--c----c-C--ceEEEE----CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCC
Q 016328           91 TFQDLPAPELKWEKMKAA---PVP--R----L-D--GAAIQI----KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF  154 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~---p~~--r----~-~--~~~~~~----~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~  154 (391)
                      .+++.+....+|+++...   +..  +    . .  .+++..    .+.||+.+-       ..-+++.+-...+|+.+.
T Consensus        82 gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~  154 (394)
T 3b7f_A           82 TVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVA  154 (394)
T ss_dssp             EEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECH
T ss_pred             cEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECc
Confidence            355666666789988642   211  1    1 1  122322    467777542       124788887888999874


Q ss_pred             CC---CC------------CCCcceEEEEEe---CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC
Q 016328          155 DM---PR------------EMAHSHLGMVTD---GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP  206 (391)
Q Consensus       155 ~~---p~------------~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~  206 (391)
                      .+   |.            +.....+++++.   .+.||+...         ...+++.+....+|+.+.
T Consensus       155 ~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~---------~ggl~~s~DgG~tW~~~~  215 (394)
T 3b7f_A          155 GFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS---------SGGVFESTDAGTDWKPLN  215 (394)
T ss_dssp             HHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE---------TBEEEEESSTTSSCEECC
T ss_pred             CccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC---------CCCEEEECCCCCCceECC
Confidence            32   21            001122344443   357887643         134778888889999885

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=84.18  E-value=21  Score=31.23  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=40.3

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-C-CEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-G-RYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      ++++|+.++.+      ..+.++|+.+.+....-.++.  ......++.. + +.+|+.+..        ...+..||+.
T Consensus        10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~--------~~~i~~~d~~   73 (349)
T 1jmx_B           10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNH--------YGDIYGIDLD   73 (349)
T ss_dssp             TCEEEEEEETT------TEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETT--------TTEEEEEETT
T ss_pred             CCEEEEEeCCC------CeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCC--------CCcEEEEeCC
Confidence            56788887653      458999998886554222222  0011233332 3 468887632        3578999998


Q ss_pred             CCceE
Q 016328          199 TKKWQ  203 (391)
Q Consensus       199 ~~~W~  203 (391)
                      +.+-.
T Consensus        74 t~~~~   78 (349)
T 1jmx_B           74 TCKNT   78 (349)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            87644

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=83.85  E-value=22  Score=31.21  Aligned_cols=98  Identities=7%  Similarity=0.046  Sum_probs=45.6

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-------CCEEEEEeCccCCCCCCCcceeE
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-------GRYIYVVTGQYGPQCRGPTAHTF  193 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~  193 (391)
                      ++.+++.|+.+.      .+.+||.....-..+..-.    ..-..+...       ++.+++.|+.+        ..+.
T Consensus       118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~l~s~~~d--------~~i~  179 (319)
T 3frx_A          118 KASMIISGSRDK------TIKVWTIKGQCLATLLGHN----DWVSQVRVVPNEKADDDSVTIISAGND--------KMVK  179 (319)
T ss_dssp             TSCEEEEEETTS------CEEEEETTSCEEEEECCCS----SCEEEEEECCC------CCEEEEEETT--------SCEE
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCeEEEEeccC----CcEEEEEEccCCCCCCCccEEEEEeCC--------CEEE
Confidence            456777777653      3777887654333221111    111122222       23356666643        3466


Q ss_pred             EEeCCCCceEECCCCCCCCC-CceEEE-ECCEEEEEccCCCCccCCCccceE
Q 016328          194 VLDTETKKWQDLPPLPVPRY-APATQL-WRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       194 ~yd~~~~~W~~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      .||..+.+-..  .+..... -.+++. -++++++.|+.++     .+..|+
T Consensus       180 ~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~~~dg-----~i~iwd  224 (319)
T 3frx_A          180 AWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIASAGKDG-----EIMLWN  224 (319)
T ss_dssp             EEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEEEETTC-----EEEEEE
T ss_pred             EEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEE
Confidence            78876654221  1111111 112222 2567777777543     355665

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=83.27  E-value=35  Score=33.19  Aligned_cols=98  Identities=11%  Similarity=-0.030  Sum_probs=47.2

Q ss_pred             cccccccccCceEEccCCCCC-ccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVP-RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~  169 (391)
                      .+..+|..+.+....-..... ......+..++..++.++.+      ..+..+|+.+.+-...  +... ...-.+++.
T Consensus       262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d------~~i~~~~~~~~~~~~~--~~gh-~~~v~~l~~  332 (611)
T 1nr0_A          262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN------GFINFVNPELGSIDQV--RYGH-NKAITALSS  332 (611)
T ss_dssp             EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT------CCEEEEETTTTEEEEE--ECCC-SSCEEEEEE
T ss_pred             eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC------CcEEEEeCCCCCcceE--EcCC-CCCEEEEEE
Confidence            566677666554332111111 11122233455666666554      2367788776542221  1110 111123333


Q ss_pred             -eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEEC
Q 016328          170 -DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL  205 (391)
Q Consensus       170 -~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~  205 (391)
                       -+++.++.|+.+        ..+..+|..+.+-...
T Consensus       333 spdg~~l~s~s~D--------~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          333 SADGKTLFSADAE--------GHINSWDISTGISNRV  361 (611)
T ss_dssp             CTTSSEEEEEETT--------SCEEEEETTTCCEEEC
T ss_pred             eCCCCEEEEEeCC--------CcEEEEECCCCceeee
Confidence             256666777654        3467888887765443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=82.96  E-value=27  Score=31.55  Aligned_cols=60  Identities=13%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             CEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC--CCCCCCCCc--eEEE--ECCEEEEEccCCCCccCCCccceEe
Q 016328          172 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP--PLPVPRYAP--ATQL--WRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       172 ~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~--~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      +..++.|+.+        ..+..||..+.+-...-  ..+......  ++..  .++.+++.|+.++     .+..|++
T Consensus       170 ~~~l~s~s~D--------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~  235 (380)
T 3iz6_a          170 ETRLITGSGD--------QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDL  235 (380)
T ss_dssp             SSCEEEECTT--------SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEET
T ss_pred             CCEEEEECCC--------CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEEC
Confidence            3445566543        34667888876643221  222222221  1111  2567888887653     4666763

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=82.79  E-value=40  Score=33.51  Aligned_cols=181  Identities=12%  Similarity=0.034  Sum_probs=81.0

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCC----------CCcceeEEEECCCCCee--eCCCCC
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSID----------YVHSHVDIYNFTDNTWG--GRFDMP  157 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~----------~~~~~~~~yd~~~~~W~--~~~~~p  157 (391)
                      .++.+|..+.+..... ++... ..+++.. +++-++++..+...          .....++++++.+.+.+  .+...+
T Consensus       152 ~i~v~d~~tg~~~~~~-~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~  229 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDV-LERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP  229 (710)
T ss_dssp             EEEEEETTTTEEEEEE-EEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred             EEEEEECCCCCCCccc-ccCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence            5677777777655431 11111 1223332 44444444333220          12345889999887643  221211


Q ss_pred             CCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC------C--ceEECCCCCCCCCCceEEEECCEEEEEc
Q 016328          158 REMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET------K--KWQDLPPLPVPRYAPATQLWRGRLHVMG  228 (391)
Q Consensus       158 ~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~------~--~W~~~~~~~~~r~~~~~~~~~~~iyv~G  228 (391)
                      .. ......... -+++..++....+..   ..++++.+|..+      .  .++.+..-.... .......++.||+.+
T Consensus       230 ~~-~~~~~~~~~SpDg~~l~~~~~~~~~---~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s  304 (710)
T 2xdw_A          230 DE-PKWMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKT  304 (710)
T ss_dssp             TC-TTCEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEE
T ss_pred             CC-CeEEEEEEEcCCCCEEEEEEEccCC---CccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEE
Confidence            10 122223333 344433333322211   147899999876      3  577665322222 122334567888886


Q ss_pred             cCCCCccCCCccceEeeeecCCc-ccCCceeecCCCCCCcceeEEEE-CCEEEEEeCCC
Q 016328          229 GSGENRYTPEVDHWSLAVKDGKP-LEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQE  285 (391)
Q Consensus       229 G~~~~~~~~~~~~~~~~~~~~d~-~~~~W~~~~~~p~~~~~~~~~~~-~~~i~v~GG~~  285 (391)
                      ....       ..+.+.+.+.+. ....|+.+.+-.....-..+... ++.+++....+
T Consensus       305 ~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          305 NRHS-------PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             CTTC-------TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             CCCC-------CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            5321       112222222211 11258776443221111233445 67777766543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=82.66  E-value=25  Score=35.02  Aligned_cols=179  Identities=9%  Similarity=0.074  Sum_probs=82.2

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCC-------CCcceeEEEECCCCCee--eCCCCCCCC
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSID-------YVHSHVDIYNFTDNTWG--GRFDMPREM  160 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~-------~~~~~~~~yd~~~~~W~--~~~~~p~~~  160 (391)
                      .++.+|..+.+......++.... .+++.. +++.++++..+...       .....++++++.+.+-+  .+...+.. 
T Consensus       148 ~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-  225 (695)
T 2bkl_A          148 VLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD-  225 (695)
T ss_dssp             EEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-
T ss_pred             EEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC-
Confidence            56777777766531111121111 222222 55656665554321       12345899999887632  22222221 


Q ss_pred             CcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCc
Q 016328          161 AHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEV  239 (391)
Q Consensus       161 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  239 (391)
                      ......... -+++..++...++.    ..++++.+|..+..|+.+..-....  ...+..++.+|+....+.       
T Consensus       226 ~~~~~~~~~SpDG~~l~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~~~-------  292 (695)
T 2bkl_A          226 PTTFLQSDLSRDGKYLFVYILRGW----SENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDEGA-------  292 (695)
T ss_dssp             TTCEEEEEECTTSCCEEEEEEETT----TEEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECTTC-------
T ss_pred             CEEEEEEEECCCCCEEEEEEeCCC----CceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECCCC-------
Confidence            122223333 34554444433321    1568888888777787775322221  222235666665543211       


Q ss_pred             cceEeeeecCC-cccCCceeecCCC-CCCcceeEEEECCEEEEEeCCC
Q 016328          240 DHWSLAVKDGK-PLEKEWRTEIPIP-RGGPHRACVVVDDRLLVIGGQE  285 (391)
Q Consensus       240 ~~~~~~~~~~d-~~~~~W~~~~~~p-~~~~~~~~~~~~~~i~v~GG~~  285 (391)
                      ..+.+.+.+.+ .+...|+.+.+.. .... ......++++++....+
T Consensus       293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l-~~~~~~~~~lv~~~~~d  339 (695)
T 2bkl_A          293 PRQRVFEVDPAKPARASWKEIVPEDSSASL-LSVSIVGGHLSLEYLKD  339 (695)
T ss_dssp             TTCEEEEEBTTBCSGGGCEEEECCCSSCEE-EEEEEETTEEEEEEEET
T ss_pred             CCCEEEEEeCCCCCccCCeEEecCCCCCeE-EEEEEECCEEEEEEEEC
Confidence            11222222221 1122387764432 2211 23344588888876554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=82.63  E-value=25  Score=31.07  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=13.5

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYH   58 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~   58 (391)
                      ++.+.+.|+.++     .+..||..+
T Consensus        38 d~~~l~sgs~D~-----~v~iWd~~~   58 (343)
T 2xzm_R           38 DSPVLISGSRDK-----TVMIWKLYE   58 (343)
T ss_dssp             CCCEEEEEETTS-----CEEEEEECS
T ss_pred             CCCEEEEEcCCC-----EEEEEECCc
Confidence            566777787666     455666544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=82.56  E-value=22  Score=30.33  Aligned_cols=93  Identities=10%  Similarity=0.049  Sum_probs=48.8

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++++||.....     ...+.+||...+.-..+.....   .....+++ -+++||+....        ...+.+||+..
T Consensus        88 ~g~l~v~~~~~-----~~~i~~~d~~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~--------~~~i~~~~~~g  151 (286)
T 1q7f_A           88 SGDIIVTERSP-----THQIQIYNQYGQFVRKFGATIL---QHPRGVTVDNKGRIIVVECK--------VMRVIIFDQNG  151 (286)
T ss_dssp             TTEEEEEECGG-----GCEEEEECTTSCEEEEECTTTC---SCEEEEEECTTSCEEEEETT--------TTEEEEECTTS
T ss_pred             CCeEEEEcCCC-----CCEEEEECCCCcEEEEecCccC---CCceEEEEeCCCCEEEEECC--------CCEEEEEcCCC
Confidence            57899986321     2358889965544333322111   12234444 36789987532        35688999876


Q ss_pred             CceEECCCCCCCCCCceEEE-ECCEEEEEcc
Q 016328          200 KKWQDLPPLPVPRYAPATQL-WRGRLHVMGG  229 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG  229 (391)
                      .....+........-..++. -+++||+...
T Consensus       152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             CEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            55444321111111122333 3578888754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=82.56  E-value=14  Score=36.79  Aligned_cols=58  Identities=7%  Similarity=0.056  Sum_probs=33.4

Q ss_pred             ceeEEEECCCC---CeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328          138 SHVDIYNFTDN---TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (391)
Q Consensus       138 ~~~~~yd~~~~---~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (391)
                      ..++++|..++   +-..+.....   ........-+++.++++.         ...++.+|..+.+...+..
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~~~~~---~~~~~~~SPDG~~la~~~---------~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLTHGEG---FATDAKLSPKGGFVSFIR---------GRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCCCSSS---CEEEEEECTTSSEEEEEE---------TTEEEEEETTTTEEEECCC
T ss_pred             CcEEEEECCCCCcceEEEcccCCc---ccccccCCCCCCEEEEEe---------CCcEEEEecCCCCEEEecc
Confidence            56999999887   5544433221   111122223555445542         2378999999887776643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=82.44  E-value=27  Score=34.20  Aligned_cols=100  Identities=13%  Similarity=0.023  Sum_probs=52.4

Q ss_pred             CCEEEEEeccCCCCC--CcceeEEEECC-CC---CeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeE
Q 016328          121 KNLLYVFAGYGSIDY--VHSHVDIYNFT-DN---TWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTF  193 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~--~~~~~~~yd~~-~~---~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~  193 (391)
                      +++.+++...+....  ....++++|.. +.   +.+.+..-.   .......+. -++++|+.+..++      ...++
T Consensus       198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~---~~~~~~~~~spdg~l~~~~~~~~------~~~l~  268 (662)
T 3azo_A          198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP---EEAIAQAEWAPDGSLIVATDRTG------WWNLH  268 (662)
T ss_dssp             TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET---TBCEEEEEECTTSCEEEEECTTS------SCEEE
T ss_pred             CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC---CceEcceEECCCCeEEEEECCCC------CeEEE
Confidence            554444444332211  13569999998 56   333332111   112223333 3677777765432      35799


Q ss_pred             EEeCCCCceEECCCCCCCC----C---CceEEEE-CCEEEEEcc
Q 016328          194 VLDTETKKWQDLPPLPVPR----Y---APATQLW-RGRLHVMGG  229 (391)
Q Consensus       194 ~yd~~~~~W~~~~~~~~~r----~---~~~~~~~-~~~iyv~GG  229 (391)
                      ++|+.+.+++.+.+.....    .   ....+.. ++++++.+.
T Consensus       269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred             EEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence            9999899998875432211    1   1123333 677776654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=81.49  E-value=20  Score=32.58  Aligned_cols=24  Identities=13%  Similarity=0.069  Sum_probs=16.3

Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCce
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (391)
                      ++++++.|+.+        ..+..||..+.+-
T Consensus       134 dg~~l~s~~~d--------~~i~iwd~~~~~~  157 (393)
T 1erj_A          134 DGKFLATGAED--------RLIRIWDIENRKI  157 (393)
T ss_dssp             TSSEEEEEETT--------SCEEEEETTTTEE
T ss_pred             CCCEEEEEcCC--------CeEEEEECCCCcE
Confidence            56777777754        3567889887653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=81.06  E-value=21  Score=30.82  Aligned_cols=61  Identities=15%  Similarity=0.134  Sum_probs=30.2

Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCC--CCceEECCCCCCCCCC-ceEEEE---CCEEEEEccCCCCccCCCccceEe
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTE--TKKWQDLPPLPVPRYA-PATQLW---RGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ++.+++.|+.++        .+..||..  ...++.+..+...... .+++..   ++.+++.|+.++     .+..|++
T Consensus        22 ~~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg-----~v~vwd~   88 (351)
T 3f3f_A           22 YGRHVATCSSDQ--------HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK-----TVKLWEE   88 (351)
T ss_dssp             SSSEEEEEETTS--------EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEE
T ss_pred             CCCEEEEeeCCC--------eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC-----eEEEEec
Confidence            556666776433        45556655  4445544333222222 222222   367777777643     3556664

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=80.98  E-value=23  Score=32.15  Aligned_cols=24  Identities=4%  Similarity=0.025  Sum_probs=16.3

Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCce
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (391)
                      ++.+++.|+.+        ..+..||..+...
T Consensus        93 ~~~~l~s~s~d--------g~v~vw~~~~~~~  116 (402)
T 2aq5_A           93 NDNVIASGSED--------CTVMVWEIPDGGL  116 (402)
T ss_dssp             CTTEEEEEETT--------SEEEEEECCTTCC
T ss_pred             CCCEEEEEeCC--------CeEEEEEccCCCC
Confidence            56777887753        3577888877643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=80.80  E-value=26  Score=30.04  Aligned_cols=57  Identities=5%  Similarity=-0.023  Sum_probs=32.3

Q ss_pred             cccccccccccCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCee
Q 016328           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWG  151 (391)
Q Consensus        89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~  151 (391)
                      ...+..+|..+.+..++-.+..+...-.++.+  +++.++.|+.+      ..+.++|..+++-.
T Consensus        44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~  102 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRL  102 (318)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeE
Confidence            34677778877765544333322222222222  55777777764      34888998877543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=80.60  E-value=36  Score=31.46  Aligned_cols=95  Identities=6%  Similarity=-0.116  Sum_probs=45.5

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeee--CCCCCCCCCcceEEEEE-eC---CEEEEEeCccCCCCCCCcceeEE
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG--RFDMPREMAHSHLGMVT-DG---RYIYVVTGQYGPQCRGPTAHTFV  194 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~~~r~~~~~~~-~~---~~iyv~GG~~~~~~~~~~~~~~~  194 (391)
                      ++..+++|+.+      ..++.++..+.....  ...+... ...-.+++. -+   +++++.|+.+        ..+..
T Consensus       160 ~~~~l~~~~~~------g~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~d--------~~i~v  224 (450)
T 2vdu_B          160 DDTTVIIADKF------GDVYSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGHQFIITSDRD--------EHIKI  224 (450)
T ss_dssp             TSSEEEEEETT------SEEEEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSCEEEEEEETT--------SCEEE
T ss_pred             CCCEEEEEeCC------CcEEEEecCCcccccccceeeecc-cCceEEEEEcCCCCCCcEEEEEcCC--------CcEEE
Confidence            45566666542      347888877654432  1112111 111122333 35   7788888754        34677


Q ss_pred             EeCCCCceEEC-CCCCCCCCCceEEEECCEEEEEccCC
Q 016328          195 LDTETKKWQDL-PPLPVPRYAPATQLWRGRLHVMGGSG  231 (391)
Q Consensus       195 yd~~~~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~  231 (391)
                      ||+.+.+.... ..-........+.. ++++++.|+.+
T Consensus       225 wd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d  261 (450)
T 2vdu_B          225 SHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD  261 (450)
T ss_dssp             EEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred             EECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence            88776543221 10011111112223 67777777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	5e-08
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-06
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-05
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	3e-07
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	5e-07
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	1e-05

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 52.1 bits (123), Expect = 5e-08
 Identities = 39/359 (10%), Positives = 91/359 (25%), Gaps = 31/359 (8%)

Query: 11  TTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHN--SIILPNNGP 68
           T   P     +      G  L+   +   +   +   + + S+W P     S        
Sbjct: 14  TIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 73

Query: 69  QKGENIGVKTKKD----VVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLL 124
                 G+    +    V        T     + +                +A      +
Sbjct: 74  HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV 133

Query: 125 YVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHS--HLGMVTDGRYIYVVTGQYG 182
           +   G  S      + ++Y+ +  TW    +       +    G+     + ++   + G
Sbjct: 134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG 193

Query: 183 P--QCRGPTAHTFVLDTETKKWQDLPPLPVPRY---------APATQLWRGRLHVMGGSG 231
              Q    TA  +   + +   +        R          A      +G++   GGS 
Sbjct: 194 SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 253

Query: 232 ENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV--VDDRLLVIGGQEGDFM 289
           + + +    +  +                            V   D    + GGQ     
Sbjct: 254 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 313

Query: 290 AKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
            +  +P+F        +Y       ++  +           +   + +L +  +   GG
Sbjct: 314 FEDSTPVFTP-----EIYVP-----EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 362

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 31/242 (12%), Positives = 54/242 (22%), Gaps = 24/242 (9%)

Query: 96  PAPEL-KWEKMKAAPVPRLDGAAIQIKNLLYVFAGY-----GSIDYVHSHVDIYNFTDNT 149
           P P L +W      P+     A       + +++ Y     G      +    ++ +   
Sbjct: 4   PQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI 63

Query: 150 WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 209
              R     +      G+  DG       GQ           T + D+ +  W   P + 
Sbjct: 64  VSDRTVTVTKHDMFCPGISMDG------NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ 117

Query: 210 VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHR 269
           V            +       G            +  K+G+      +T   +P    + 
Sbjct: 118 VA--------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP 169

Query: 270 ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPD 329
                   L         F  K GS            Y            K         
Sbjct: 170 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS----GSGDVKSAGKRQSNR 225

Query: 330 SH 331
             
Sbjct: 226 GV 227

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 6/136 (4%)

Query: 107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG 166
           A     + G  +             + +     +     + NT      +          
Sbjct: 236 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSV 295

Query: 167 MVTDGRYIYVVTGQYGPQC---RGPTAHTFVLDTETKKWQDLPPLPVPRY--APATQLWR 221
           ++ DG   ++  GQ          P     +   E   +    P  + R   + +  L  
Sbjct: 296 VLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD 354

Query: 222 GRLHVMGGSGENRYTP 237
           GR+   GG      T 
Sbjct: 355 GRVFNGGGGLCGDCTT 370

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 33/277 (11%), Positives = 57/277 (20%), Gaps = 70/277 (25%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
            W ++    VPR   A   +  LLY   G  +    ++     +  +             
Sbjct: 30  TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 89

Query: 161 AHSHLGMVTDGRYIYVVTGQY--------------------------------------- 181
              +   V          G                                         
Sbjct: 90  VPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNR 149

Query: 182 ------GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRY 235
                 G               E  +W+ +  +   R      +    ++  GG      
Sbjct: 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 209

Query: 236 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSP 295
              V+ +           + W    P+          V   R+ V+GG +G         
Sbjct: 210 LNSVERY-------DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH-------- 254

Query: 296 IFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 331
                       D V   D D   W  +  M    S 
Sbjct: 255 ---------TFLDSVECYDPDTDTWSEVTRMTSGRSG 282

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 230
           GR IY   G +    R   ++    +     W  L  L VPR   A  +  G L+ +GG 
Sbjct: 4   GRLIYTAGGYF----RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 59

Query: 231 GENRYTPEVDHW 242
             +         
Sbjct: 60  NNSPDGNTDSSA 71

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 13/145 (8%)

Query: 130 YGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT 189
            G  D  +       +       R         S  G+      IY   G      +   
Sbjct: 154 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD---GQDQL 210

Query: 190 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDG 249
                 D ET+ W  + P+   R A    + +GR++V+GG   + +   V+ +       
Sbjct: 211 NSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYD------ 264

Query: 250 KPLEKEWR--TEIPIPRGGPHRACV 272
            P    W   T +   R G     V
Sbjct: 265 -PDTDTWSEVTRMTSGRSG-VGVAV 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.87
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.24
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.03
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.8
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.44
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.49
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.45
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	94.43
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.17
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	93.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	93.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	93.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.8
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	92.74
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.53
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	92.28
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	90.57
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	90.42
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	90.38
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	89.64
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	89.11
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	88.5
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	88.49
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	87.53
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	86.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	86.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	86.17
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	85.34
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	85.16
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	85.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	84.01
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.44
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	82.21
d1tbga_	340	beta1-subunit of the signal-transducing G protein	81.72
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	81.41
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	81.07
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	80.04

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-42  Score=312.82  Aligned_cols=261  Identities=18%  Similarity=0.248  Sum_probs=221.2

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCC---CCCcceeEEEECCCCCeeeCCCCCCCCCcceEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSI---DYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~---~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~  167 (391)
                      .++.||+.+++|+++++||.||.+|+++.++++|||+||....   ....+++++||+.+++|+.+++||.  +|..|++
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~--~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV--PRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS--CCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccc--eecceec
Confidence            5666777888999999999999999999999999999997432   2345789999999999999999988  7899999


Q ss_pred             EEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeee
Q 016328          168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (391)
Q Consensus       168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  247 (391)
                      ++.+++||++||..+...   .++.+.||+.+++|...+.++.+|..|+++++++++|++||..........+       
T Consensus        98 ~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~-------  167 (288)
T d1zgka1          98 GVIDGHIYAVGGSHGCIH---HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE-------  167 (288)
T ss_dssp             EEETTEEEEECCEETTEE---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEE-------
T ss_pred             cccceeeEEecceecccc---cceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEE-------
Confidence            999999999999876553   7889999999999999999999999999999999999999986544333333       


Q ss_pred             cCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC
Q 016328          248 DGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP  326 (391)
Q Consensus       248 ~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~  326 (391)
                      .||+.+++|...+.++..+..++++..+++|+++||.....                 ..++.+.|| .+++|+.++++|
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~p  230 (288)
T d1zgka1         168 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-----------------QLNSVERYDVETETWTFVAPMK  230 (288)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECCCCS
T ss_pred             EeeccccccccccccccccccccccceeeeEEEecCccccc-----------------cccceeeeeecceeeecccCcc
Confidence            34588999999998888888889999999999999986543                 356789999 999999999888


Q ss_pred             CCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc---cccCCCcccccceee
Q 016328          327 KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV---SAFYPFNILCHPHVK  389 (391)
Q Consensus       327 ~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~lp~~~~~~~~~~  389 (391)
                      .+|..  ++++.++++|||+||.+....       .+++|+||+.+++   ...||.+|..|+++.
T Consensus       231 ~~r~~--~~~~~~~~~l~v~GG~~~~~~-------~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~~  287 (288)
T d1zgka1         231 HRRSA--LGITVHQGRIYVLGGYDGHTF-------LDSVECYDPDTDTWSEVTRMTSGRSGVGVAV  287 (288)
T ss_dssp             SCCBS--CEEEEETTEEEEECCBCSSCB-------CCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred             Ccccc--eEEEEECCEEEEEecCCCCee-------cceEEEEECCCCEEEECCCCCCCcEeEEEEE
Confidence            87765  466889999999999865432       3589999997555   557899999998653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-36  Score=272.22  Aligned_cols=272  Identities=18%  Similarity=0.263  Sum_probs=232.9

Q ss_pred             ecCEEEEecCCCCcccceeEeeecCCCCe-eecCC-CCCCCCceeeEeecC-cccccc-------cccccccccccccCc
Q 016328           32 VADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTKK-DVVPKR-------ILPATFQDLPAPELK  101 (391)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~-~~~r~~~g~~~~~~~-~~~~~~-------~~~~~~~~~d~~~~~  101 (391)
                      ++++||++||.+. ..++++++|||++++ ..+++ +.+|..+.++...+. +..++.       ...++++.||+.+++
T Consensus         3 ~g~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~   81 (288)
T d1zgka1           3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ   81 (288)
T ss_dssp             CCCCEEEECCBSS-SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             cCCEEEEECCcCC-CCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccc
Confidence            5789999999764 578999999999999 77877 778988887776555 555552       234578999999999


Q ss_pred             eEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCcc
Q 016328          102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY  181 (391)
Q Consensus       102 W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~  181 (391)
                      |++++++|.+|..|+++.+++++|++||...... ++..+.||+.+++|...+.++.  .|..++++..++++|++||.+
T Consensus        82 w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~GG~~  158 (288)
T d1zgka1          82 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVAPMLT--RRIGVGVAVLNRLLYAVGGFD  158 (288)
T ss_dssp             EEECCCCSSCCBTCEEEEETTEEEEECCEETTEE-CCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBC
T ss_pred             ccccccccceecceeccccceeeEEecceecccc-cceeeeeccccCcccccccccc--ccccceeeeeeecceEecCcc
Confidence            9999999999999999999999999999875554 5779999999999999988887  788999999999999999987


Q ss_pred             CCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecC
Q 016328          182 GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP  261 (391)
Q Consensus       182 ~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~  261 (391)
                      ....   ..+++.||+.+++|...+.++.++..+++++.+++||++||............       ||..+++|+.+++
T Consensus       159 ~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~-------~~~~~~~~~~~~~  228 (288)
T d1zgka1         159 GTNR---LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVER-------YDVETETWTFVAP  228 (288)
T ss_dssp             SSCB---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEE-------EETTTTEEEECCC
T ss_pred             cccc---cceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceee-------eeecceeeecccC
Confidence            6543   67899999999999999999999999999999999999999876544433333       3588999999999


Q ss_pred             CCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCcee
Q 016328          262 IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (391)
Q Consensus       262 ~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~  334 (391)
                      +|..|..+++++++++|||+||.+...                 ..+++++|| .+++|+++++||.+|..+++
T Consensus       229 ~p~~r~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~  285 (288)
T d1zgka1         229 MKHRRSALGITVHQGRIYVLGGYDGHT-----------------FLDSVECYDPDTDTWSEVTRMTSGRSGVGV  285 (288)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSC-----------------BCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             ccCcccceEEEEECCEEEEEecCCCCe-----------------ecceEEEEECCCCEEEECCCCCCCcEeEEE
Confidence            999999999999999999999986543                 467899999 99999999999999876543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=100.00  E-value=6.3e-35  Score=275.69  Aligned_cols=320  Identities=11%  Similarity=0.046  Sum_probs=224.6

Q ss_pred             HhheecCEEEEecCCCCc------ccceeEeeecCCCCe-eecCC-CCCC--CCceeeEeecC-cccccccccccccccc
Q 016328           28 GFALVADFFWASSSKFTS------SYLNIASNWSPYHNS-IILPN-NGPQ--KGENIGVKTKK-DVVPKRILPATFQDLP   96 (391)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~------~~~~~~~~~d~~~~~-~~lp~-~~~r--~~~g~~~~~~~-~~~~~~~~~~~~~~~d   96 (391)
                      +++..+++||++||....      ..+..++.|||.+++ ..++. ..+|  ...+.+....+ ....+..-.+.+..||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            445558999999996432      334568899999999 55544 3344  34455555544 2233322345789999


Q ss_pred             cccCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCc------------c
Q 016328           97 APELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAH------------S  163 (391)
Q Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r------------~  163 (391)
                      +.+++|+++++||.+|..|+++.+ +++||++||.......++++++||+.+++|+.++.++.+..+            .
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  184 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH  184 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccce
Confidence            999999999999999999999887 679999999987777788899999999999998776553211            1


Q ss_pred             eEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCC-------CCCCCceEEE--ECCEEEEEccCCCCc
Q 016328          164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-------VPRYAPATQL--WRGRLHVMGGSGENR  234 (391)
Q Consensus       164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-------~~r~~~~~~~--~~~~iyv~GG~~~~~  234 (391)
                      .......++++|++||.        ....+.||+.+..|...+.++       .++..+++..  .++++|++||.....
T Consensus       185 ~~~~~~~~G~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~  256 (387)
T d1k3ia3         185 AWLFGWKKGSVFQAGPS--------TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ  256 (387)
T ss_dssp             CCEEECGGGCEEECCSS--------SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred             eEEEEeCCCCEEEecCc--------CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCC
Confidence            12223335566666653        567899999999998875333       3344444433  479999999976432


Q ss_pred             cC-CCccceEeeeecCCcccCCceeecCCCCCCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEE
Q 016328          235 YT-PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM  312 (391)
Q Consensus       235 ~~-~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (391)
                      .. .........++.+++..+.|+...+||.+|..++++++ +++||++||.......           .......+++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~-----------~~~~~~~~ve~  325 (387)
T d1k3ia3         257 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF-----------EDSTPVFTPEI  325 (387)
T ss_dssp             SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT-----------CCCSBCCCCEE
T ss_pred             CCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccC-----------CCCcEeceEEE
Confidence            22 22233334455666778889999999999988888887 7799999998643211           11123456788


Q ss_pred             Ec-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEec
Q 016328          313 LD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNL  370 (391)
Q Consensus       313 ~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~  370 (391)
                      || .+++|+.+++|+.+|.+|+.+++..|++|||+||.........    ..++++|||
T Consensus       326 Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~----~~~~e~y~P  380 (387)
T d1k3ia3         326 YVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN----HFDAQIFTP  380 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCC----CCEEEEEEC
T ss_pred             EECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCcCCCCcc----cceEEEEcc
Confidence            99 8999999999999998876554455899999999643322211    247888887

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=7.3e-29  Score=233.74  Aligned_cols=276  Identities=13%  Similarity=0.059  Sum_probs=178.6

Q ss_pred             cccCceEEccCCCCCccCceEEEECCEEEEEeccCCCC-----CCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-e
Q 016328           97 APELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-D  170 (391)
Q Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~  170 (391)
                      |...+|++..++|..|.+++++..+++||||||.....     ..+..+++||+.+++|+..+.++.+..+.+++.++ .
T Consensus         6 p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~   85 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG   85 (387)
T ss_dssp             TTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT
T ss_pred             CCCCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec
Confidence            56679999999998888777777799999999985432     23446899999999999988877755555555444 5


Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEEccCCCC-ccCCCccceE-----
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGEN-RYTPEVDHWS-----  243 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~~~-----  243 (391)
                      +++||++||.+       .+++++||+.+++|+.+++|+.+|..|+++++ +++||++||.... ....+.+.|+     
T Consensus        86 ~g~i~v~Gg~~-------~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          86 NGQIVVTGGND-------AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TSCEEEECSSS-------TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CCcEEEeecCC-------CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            78999999864       35688999999999999999999999999976 6799999997432 1222222222     


Q ss_pred             --------------------------------------------eeeecCCcccCCceeecCCC-------CCCcceeEE
Q 016328          244 --------------------------------------------LAVKDGKPLEKEWRTEIPIP-------RGGPHRACV  272 (391)
Q Consensus       244 --------------------------------------------~~~~~~d~~~~~W~~~~~~p-------~~~~~~~~~  272 (391)
                                                                  ..++.+|+.+..|...+.++       ..+.++++.
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence                                                        01122344444444332221       111122222


Q ss_pred             E--ECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccc
Q 016328          273 V--VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGT  349 (391)
Q Consensus       273 ~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~  349 (391)
                      .  .++++|++||.......         .........+++.++ ....|+.+++||.+|..+. ++++.|++|||+||.
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~~~~dg~i~v~GG~  308 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDS---------DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT-SVVLPDGSTFITGGQ  308 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSS---------BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE-EEECTTSCEEEECCB
T ss_pred             eeccCCceEEEEeccCCCCC---------cccceeecccccccccCCCceeeccccccccccce-eeeccCCeEEEECCc
Confidence            1  37889999997543210         001111112223333 4567889999998887653 334457899999998


Q ss_pred             cCCCCcccceeEecceEEEecCccc---cccCCCcccccceeec
Q 016328          350 TEKHPTTKKMVLVGEIFQFNLNTLV---SAFYPFNILCHPHVKC  390 (391)
Q Consensus       350 ~~~~~~~~~~~~~~~v~~~d~~~~~---~~~lp~~~~~~~~~~~  390 (391)
                      ........ .....++++||+++++   ...||.+|..|..+.+
T Consensus       309 ~~~~~~~~-~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l  351 (387)
T d1k3ia3         309 RRGIPFED-STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL  351 (387)
T ss_dssp             SBCCTTCC-CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEE
T ss_pred             ccCccCCC-CcEeceEEEEECCCCeEEECCCCCCcccceEEEEE
Confidence            64332111 0122467778876555   4577889999976543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.87  E-value=0.0041  Score=52.69  Aligned_cols=144  Identities=17%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             CEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccCCCC
Q 016328           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (391)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  110 (391)
                      .|+||.+..++     .+..||+++++  ..++-.  ....+++..-.+ +..-.......+..+|..+.+-  +..++.
T Consensus         2 ~~~yV~~~~~~-----~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~--~~~~~~   72 (301)
T d1l0qa2           2 TFAYIANSESD-----NISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPA   72 (301)
T ss_dssp             EEEEEEETTTT-----EEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEEC
T ss_pred             eEEEEEECCCC-----EEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce--eeeeec
Confidence            47899877555     57889999998  444431  112344433222 2211122234677888776643  222222


Q ss_pred             CccCceEEEE-C-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE--eCCEEEEEeCccCCCCC
Q 016328          111 PRLDGAAIQI-K-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCR  186 (391)
Q Consensus       111 ~r~~~~~~~~-~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~  186 (391)
                      ...-+.++.. + ..+++.+..+      ..+..+|..+++-...-....    ....++.  .+..+++.+..      
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dg~~~~~~~~~------  136 (301)
T d1l0qa2          73 GSSPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNG------  136 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETT------
T ss_pred             ccccccccccccccccccccccc------ceeeecccccceeeeeccccc----cceEEEeecCCCeeeeeecc------
Confidence            2222333333 3 3555554321      347778887776544322221    1222333  23455555432      


Q ss_pred             CCcceeEEEeCCCCceEE
Q 016328          187 GPTAHTFVLDTETKKWQD  204 (391)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~  204 (391)
                        ...+..++..+.....
T Consensus       137 --~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2         137 --DKTVSVINTVTKAVIN  152 (301)
T ss_dssp             --TTEEEEEETTTTEEEE
T ss_pred             --ccceeeeeccccceee
Confidence              2456677877765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.24  E-value=0.15  Score=44.42  Aligned_cols=128  Identities=11%  Similarity=0.084  Sum_probs=65.1

Q ss_pred             cccccccccCceEEccCCCCCccC-ceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLD-GAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV  168 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~  168 (391)
                      .+..||..+++++....+...... .+++.. +++.++.||.+      ..+.++|+.+++|+....+... .+.-.++.
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~-~~~v~~i~  102 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRTWKPTLVILRI-NRAARCVR  102 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTEEEEEEECCCC-SSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC------CeEEEEeecccccccccccccc-cccccccc
Confidence            455666666666655444322211 222222 45556666654      2488899999999875444331 12223333


Q ss_pred             E-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE--CCEEEEEccCC
Q 016328          169 T-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSG  231 (391)
Q Consensus       169 ~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  231 (391)
                      . -+++.++.|+.++      .-.++.++...+.+........-+..-.++..  ++++++.|+.+
T Consensus       103 ~~p~~~~l~~~s~d~------~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_         103 WAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             ECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccceeecccC------cceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            3 2556666665443      34566677666666544322222222122222  56677777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.03  E-value=0.19  Score=41.82  Aligned_cols=53  Identities=13%  Similarity=0.160  Sum_probs=28.1

Q ss_pred             CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEE-ECCEEEEEccCC
Q 016328          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSG  231 (391)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~  231 (391)
                      ++++++.|+.+        ..+..||..+.+...+........-.+++. -+++.++.|+.+
T Consensus       147 ~~~~l~~g~~d--------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  200 (299)
T d1nr0a2         147 DKQFVAVGGQD--------SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS  200 (299)
T ss_dssp             TSCEEEEEETT--------SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccc
Confidence            56677777653        457788887776554432222222222332 245566666543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.80  E-value=0.039  Score=47.13  Aligned_cols=152  Identities=9%  Similarity=-0.006  Sum_probs=70.0

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe-e---ecCCCCCCCCceeeEeecC-cccccccccccccccccccCceEEccC
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-I---ILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKA  107 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~---~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~  107 (391)
                      ++..+++++.++     .+..||+.+.+ .   .+|.  .....+++..-.+ +..-.......+..+|..+.+=.....
T Consensus         7 ~~~~l~~~~~~~-----~v~v~D~~t~~~~~t~~~~~--~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           7 GHEYMIVTNYPN-----NLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             TCEEEEEEETTT-----EEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEEcCCC-----EEEEEECCCCCEEEEEEcCC--CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            566677777555     78999999998 2   2443  1112233333222 111111223467778877653222111


Q ss_pred             CCCC-----ccCceEEEE--CCEEEEEeccCCCC-----CCcceeEEEECCCCCeee-CCCCCCCCCcceEEEEEeCCEE
Q 016328          108 APVP-----RLDGAAIQI--KNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVTDGRYI  174 (391)
Q Consensus       108 ~p~~-----r~~~~~~~~--~~~vyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~-~~~~p~~~~r~~~~~~~~~~~i  174 (391)
                      ....     +.-..++.-  +.++|+.+......     .....+.++|..+.+-.. +.....| ..........++++
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGSL  158 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSCE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc-CceEEEEecCCCEE
Confidence            1111     111223222  34788776432111     112346777776654322 1111111 11222333456778


Q ss_pred             EEEeCccCCCCCCCcceeEEEeCCCCceE
Q 016328          175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQ  203 (391)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~  203 (391)
                      |+.++           ++..+|..+.+..
T Consensus       159 ~~~~~-----------~~~~~~~~~~~~~  176 (346)
T d1jmxb_         159 YVAGP-----------DIYKMDVKTGKYT  176 (346)
T ss_dssp             EEESS-----------SEEEECTTTCCEE
T ss_pred             EEeCC-----------cceEEEccCCCEE
Confidence            87743           3455666665544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.44  E-value=0.1  Score=45.62  Aligned_cols=96  Identities=14%  Similarity=0.223  Sum_probs=55.3

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      +++++++|+.+      ..+.+||..+++++.+..+... ...-.+++.. ++++++.||.+        ..+..||+.+
T Consensus        18 dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH-~~~V~~l~fsp~~~~l~s~s~D--------~~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD--------RNAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCC-CCCEEEEEECCCCCEEEEEECC--------CeEEEEeecc
Confidence            45666777643      3588999998988876555321 1112233333 55666667653        3467788888


Q ss_pred             CceEECCCCCCCCCCceEEEE--CCEEEEEccCC
Q 016328          200 KKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSG  231 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  231 (391)
                      .+|+..............+..  +++.++.|+.+
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d  116 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS  116 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeeccc
Confidence            888876544332222222222  56666666543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.49  E-value=0.55  Score=38.46  Aligned_cols=23  Identities=13%  Similarity=0.014  Sum_probs=16.1

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      ++.+.+.|+.++     .+-.||..+++
T Consensus        28 ~~~~l~s~s~Dg-----~i~iWd~~~~~   50 (317)
T d1vyhc1          28 VFSVMVSASEDA-----TIKVWDYETGD   50 (317)
T ss_dssp             SSSEEEEEESSS-----CEEEEETTTCC
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCC
Confidence            455667777666     56778888776

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.45  E-value=1.1  Score=37.23  Aligned_cols=23  Identities=4%  Similarity=0.120  Sum_probs=17.3

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      ++.+.+.|+.++     .+..||..+.+
T Consensus        22 ~~~~l~tgs~Dg-----~i~vWd~~~~~   44 (355)
T d1nexb2          22 EDNYVITGADDK-----MIRVYDSINKK   44 (355)
T ss_dssp             ETTEEEEEETTT-----EEEEEETTTTE
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCc
Confidence            556667787666     67889998887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=94.43  E-value=0.26  Score=40.72  Aligned_cols=22  Identities=9%  Similarity=-0.011  Sum_probs=16.5

Q ss_pred             CEEEEecCCCCcccceeEeeecCCCCe
Q 016328           34 DFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      .+||+.++.++     .+..||..+++
T Consensus        44 ~~l~v~~~~~~-----~i~v~d~~t~~   65 (301)
T d1l0qa2          44 TKVYVANAHSN-----DVSIIDTATNN   65 (301)
T ss_dssp             SEEEEEEGGGT-----EEEEEETTTTE
T ss_pred             CEEEEEECCCC-----EEEEEECCCCc
Confidence            46787775443     68899999988

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.17  E-value=0.93  Score=37.66  Aligned_cols=24  Identities=4%  Similarity=-0.020  Sum_probs=15.7

Q ss_pred             ECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          339 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       339 ~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                      .++.+++.|+.++            .|..||..++.
T Consensus       280 ~~~~~l~~g~~dg------------~i~iwd~~~~~  303 (340)
T d1tbga_         280 KSGRLLLAGYDDF------------NCNVWDALKAD  303 (340)
T ss_dssp             SSSCEEEEEETTS------------CEEEEETTTCC
T ss_pred             CCCCEEEEEECCC------------EEEEEECCCCc
Confidence            3567777777653            46777776655

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.91  E-value=1.5  Score=36.74  Aligned_cols=95  Identities=11%  Similarity=0.136  Sum_probs=42.5

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (391)
                      +++.++.+|.+...    .+.++|.++.+-..  .+... ...-.+++..  +..+++.|+.+        ..+..||..
T Consensus       113 d~~~l~~~~~~~~~----~~~v~~~~~~~~~~--~l~~h-~~~v~~v~~~~~~~~~l~sgs~d--------~~i~i~d~~  177 (311)
T d1nr0a1         113 ESKRIAAVGEGRER----FGHVFLFDTGTSNG--NLTGQ-ARAMNSVDFKPSRPFRIISGSDD--------NTVAIFEGP  177 (311)
T ss_dssp             TSCEEEEEECCSSC----SEEEEETTTCCBCB--CCCCC-SSCEEEEEECSSSSCEEEEEETT--------SCEEEEETT
T ss_pred             cccccccccccccc----cccccccccccccc--ccccc-ccccccccccccceeeecccccc--------ccccccccc
Confidence            45666666643222    25567776554322  22221 1111233332  33456777653        346678887


Q ss_pred             CCceEECCCCCCCCCCceEEE-ECCEEEEEccCC
Q 016328          199 TKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSG  231 (391)
Q Consensus       199 ~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~  231 (391)
                      +.+-...-... ...-.++.. -++++++.|+.+
T Consensus       178 ~~~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d  210 (311)
T d1nr0a1         178 PFKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGD  210 (311)
T ss_dssp             TBEEEEEECCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccc-cccccccccCcccccccccccc
Confidence            65432221111 111122222 255667777654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.86  E-value=0.88  Score=38.31  Aligned_cols=68  Identities=12%  Similarity=0.017  Sum_probs=35.3

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++++++.|+.+      ..+.+||..+.+......++.. ...-.+++. .++++++.+|.+.      ...+..+|.++
T Consensus        69 ~g~~latg~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~d~~~l~~~~~~~------~~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVH------GNVRIWDTTQTTHILKTTIPVF-SGPVKDISWDSESKRIAAVGEGR------ERFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETT------SEEEEEESSSTTCCEEEEEECS-SSCEEEEEECTTSCEEEEEECCS------SCSEEEEETTT
T ss_pred             CCCeEeccccC------ceEeeeeeeccccccccccccc-cCccccccccccccccccccccc------ccccccccccc
Confidence            56777778765      3488899888765432222221 111123333 2556666665332      22345666665


Q ss_pred             Cc
Q 016328          200 KK  201 (391)
Q Consensus       200 ~~  201 (391)
                      .+
T Consensus       136 ~~  137 (311)
T d1nr0a1         136 GT  137 (311)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.32  E-value=1.1  Score=37.26  Aligned_cols=101  Identities=6%  Similarity=-0.095  Sum_probs=47.6

Q ss_pred             eeEeeecCCCCe--eecCCC-CCCCCceeeEeecC-cc-cccccccccccccccccCceEEccCCCCC----ccCceEEE
Q 016328           49 NIASNWSPYHNS--IILPNN-GPQKGENIGVKTKK-DV-VPKRILPATFQDLPAPELKWEKMKAAPVP----RLDGAAIQ  119 (391)
Q Consensus        49 ~~~~~~d~~~~~--~~lp~~-~~r~~~g~~~~~~~-~~-~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~~~~~~  119 (391)
                      +.+..||.++.+  ..++.. ......+++..-.+ +. ..+ .....+..||..+.+....-..+.+    ...+.++.
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~-~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~   89 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV-NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE-TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE-CCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEE
Confidence            378899999988  444431 11222233332222 21 111 1234678888887765433222221    11223333


Q ss_pred             E--CCEEEEEeccCCC-----CCCcceeEEEECCCCCe
Q 016328          120 I--KNLLYVFAGYGSI-----DYVHSHVDIYNFTDNTW  150 (391)
Q Consensus       120 ~--~~~vyv~GG~~~~-----~~~~~~~~~yd~~~~~W  150 (391)
                      .  ++.+|+.+.....     ......+..+|..+.+=
T Consensus        90 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (337)
T d1pbyb_          90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR  127 (337)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred             cCCCcEEEEeecCCcceeeeccccccceeeccccCCeE
Confidence            2  3466665432110     11124577788877653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.80  E-value=1.3  Score=37.06  Aligned_cols=79  Identities=9%  Similarity=0.058  Sum_probs=46.2

Q ss_pred             cccccccccccCceEEccCCCCCccCceEE-EECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCC--CCcceE
Q 016328           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAI-QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE--MAHSHL  165 (391)
Q Consensus        89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--~~r~~~  165 (391)
                      ...++++|+.+++-+.. .+|.  .-.+++ .-++.+++...        +.+..||+.+++++.+...+..  ..|..-
T Consensus        39 ~~~I~r~d~~~g~~~~~-~~~~--~~~~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd  107 (295)
T d2ghsa1          39 ERELHELHLASGRKTVH-ALPF--MGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELESDLPGNRSND  107 (295)
T ss_dssp             GTEEEEEETTTTEEEEE-ECSS--CEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSSTTCTTEEEEE
T ss_pred             CCEEEEEECCCCeEEEE-ECCC--CcEEEEEecCCCEEEEEe--------CccEEeecccceeeEEeeeecCCCccccee
Confidence            34678888887653322 2222  112233 34677777542        2489999999999887654432  124444


Q ss_pred             EEEEeCCEEEEEe
Q 016328          166 GMVTDGRYIYVVT  178 (391)
Q Consensus       166 ~~~~~~~~iyv~G  178 (391)
                      ..+--++.||+.-
T Consensus       108 ~~vd~~G~iw~~~  120 (295)
T d2ghsa1         108 GRMHPSGALWIGT  120 (295)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             eEECCCCCEEEEe
Confidence            4444577888754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.74  E-value=2.2  Score=35.14  Aligned_cols=180  Identities=12%  Similarity=0.063  Sum_probs=87.9

Q ss_pred             Hhhe-ecCEEEEecCCCCcccceeEeeecCCCCe-eecCCCCC-----CCCceeeEeecC--cccccccccccccccccc
Q 016328           28 GFAL-VADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGP-----QKGENIGVKTKK--DVVPKRILPATFQDLPAP   98 (391)
Q Consensus        28 ~~~~-~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~~-----r~~~g~~~~~~~--~~~~~~~~~~~~~~~d~~   98 (391)
                      ++|+ -++.|||.-..     -+.+..||+.-+- ...+....     ....+.......  ...........+..++..
T Consensus        27 gvavd~dg~i~VaD~~-----n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          27 GVAVNAQNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             EEEECTTCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             EEEEcCCCCEEEEECC-----CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            3344 46789988431     2467888887554 44443111     111222222111  111112222345556655


Q ss_pred             cCceEEccCCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEE
Q 016328           99 ELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYV  176 (391)
Q Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv  176 (391)
                      ...+........ ...+.+++- ++.+|+....      ...+.+|++..+.-........  ......+++ -++.||+
T Consensus       102 g~~~~~~~~~~~-~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~~--~~~~~~i~~d~~g~i~v  172 (279)
T d1q7fa_         102 GQFVRKFGATIL-QHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKH--LEFPNGVVVNDKQEIFI  172 (279)
T ss_dssp             SCEEEEECTTTC-SCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTT--CSSEEEEEECSSSEEEE
T ss_pred             ccceeecCCCcc-cccceeccccCCcEEEEeec------cceeeEeccCCceeeccccccc--ccccceeeeccceeEEe
Confidence            544444322111 111223322 4678887543      2357888887664443322211  122334444 4578999


Q ss_pred             EeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEE-ECCEEEEEcc
Q 016328          177 VTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGG  229 (391)
Q Consensus       177 ~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG  229 (391)
                      ....        ...++.||+..+....+........-..+++ -++.|||.-.
T Consensus       173 ~d~~--------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         173 SDNR--------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             EEGG--------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             eecc--------ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEEC
Confidence            8653        4678899998876666642111111123333 3667998743

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=1.2  Score=37.67  Aligned_cols=94  Identities=7%  Similarity=-0.021  Sum_probs=44.1

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEE
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV  168 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~  168 (391)
                      .+..||....+.+....+...........+  ++.+++.++.+      ..+..+|..+++-........   ..-.+++
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~~~~~~~~~~~~---~~v~~l~  190 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHT---DGASCID  190 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCS---SCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccc---ccccccc
Confidence            566667665544333333222222222222  44555665543      247888887765333222111   1112333


Q ss_pred             E-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328          169 T-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (391)
Q Consensus       169 ~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (391)
                      . .++..++.|+.+        ..+..||..+.+
T Consensus       191 ~s~~~~~~~~~~~d--------~~v~i~d~~~~~  216 (337)
T d1gxra_         191 ISNDGTKLWTGGLD--------NTVRSWDLREGR  216 (337)
T ss_dssp             ECTTSSEEEEEETT--------SEEEEEETTTTE
T ss_pred             cccccccccccccc--------ccccccccccce
Confidence            3 345566666543        456778887654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.28  E-value=2.5  Score=34.81  Aligned_cols=100  Identities=8%  Similarity=0.027  Sum_probs=49.1

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++.+++.|..+      ..+..+|..+.+.........  ..........++..++.|+.+        ..+..||..+.
T Consensus       170 ~~~~~~~~~~d------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d--------~~i~i~d~~~~  233 (355)
T d1nexb2         170 HGNIVVSGSYD------NTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMD--------TTIRIWDLENG  233 (355)
T ss_dssp             ETTEEEEEETT------SCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETT--------SCEEEEETTTC
T ss_pred             ccceeeeeccc------ceeeeeecccccceeeeeccc--cccccccccccceeeeccccc--------ceEEeeecccc
Confidence            34455555443      247788887765444322222  122222233345555666543        34667888776


Q ss_pred             ceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceE
Q 016328          201 KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS  243 (391)
Q Consensus       201 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  243 (391)
                      .-...  +......-.++..+++.++.|+.++     .+..|+
T Consensus       234 ~~~~~--~~~h~~~v~~~~~~~~~l~~~~~dg-----~i~iwd  269 (355)
T d1nexb2         234 ELMYT--LQGHTALVGLLRLSDKFLVSAAADG-----SIRGWD  269 (355)
T ss_dssp             CEEEE--ECCCSSCCCEEEECSSEEEEECTTS-----EEEEEE
T ss_pred             ccccc--cccccccccccccccceeeeeeccc-----cccccc
Confidence            53322  1111111234455677777777543     355565

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=1.7  Score=36.63  Aligned_cols=66  Identities=9%  Similarity=0.126  Sum_probs=35.4

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++..++.|+.+      ..+.+||....+.+....+..... .-...+.. ++.+++.++.+        ..+..+|..+
T Consensus       108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d--------~~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSD--------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEeecc------cccccccccccccccccccccccc-cccccccccccccccccccc--------cccccccccc
Confidence            55666777654      358889988776655433332111 11223332 45566665532        3567788877


Q ss_pred             Cc
Q 016328          200 KK  201 (391)
Q Consensus       200 ~~  201 (391)
                      .+
T Consensus       173 ~~  174 (337)
T d1gxra_         173 QT  174 (337)
T ss_dssp             TE
T ss_pred             cc
Confidence            65

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=3.8  Score=33.37  Aligned_cols=98  Identities=12%  Similarity=0.111  Sum_probs=47.2

Q ss_pred             EEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeee
Q 016328          167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAV  246 (391)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  246 (391)
                      ....++..++.|+.++        .+..||..+.+-.....  .....-.+...++.+++.|+.++     .+..|+.  
T Consensus       182 ~~~~~~~~l~s~~~dg--------~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~s~d~-----~i~iwd~--  244 (342)
T d2ovrb2         182 SLQFDGIHVVSGSLDT--------SIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNADS-----TVKIWDI--  244 (342)
T ss_dssp             EEEECSSEEEEEETTS--------CEEEEETTTCCEEEEEC--CCCSCEEEEEEETTEEEEEETTS-----CEEEEET--
T ss_pred             cccCCCCEEEEEeCCC--------eEEEeecccceeeeEec--ccccceeEEecCCCEEEEEcCCC-----EEEEEec--
Confidence            3445666677776543        46778887665322211  11111223334555666776543     3555552  


Q ss_pred             ecCCcccCCce-eecCCCCCCcceeEEEECCEEEEEeCCCC
Q 016328          247 KDGKPLEKEWR-TEIPIPRGGPHRACVVVDDRLLVIGGQEG  286 (391)
Q Consensus       247 ~~~d~~~~~W~-~~~~~p~~~~~~~~~~~~~~i~v~GG~~~  286 (391)
                           ...+-. .+...........+...++.+++.|+.++
T Consensus       245 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg  280 (342)
T d2ovrb2         245 -----KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG  280 (342)
T ss_dssp             -----TTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS
T ss_pred             -----ccccccccccccceeeeceeecccCCCeeEEEcCCC
Confidence                 222211 22221222222344566777888887653

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=2  Score=33.64  Aligned_cols=53  Identities=13%  Similarity=0.149  Sum_probs=29.8

Q ss_pred             EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEE--C----CCCCCCCCCceEEEE--CCEEEEEccC
Q 016328          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD--L----PPLPVPRYAPATQLW--RGRLHVMGGS  230 (391)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~  230 (391)
                      +++..++.+|+|-|.          .+|+++........  +    +.+|.+.  -++...  ++++|+|-|.
T Consensus        16 Av~~~~G~~y~Fkg~----------~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG~   76 (195)
T d1su3a2          16 AITTIRGEVMFFKDR----------FYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKGN   76 (195)
T ss_dssp             EEEEETTEEEEEETT----------EEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEETT
T ss_pred             EEEEcCCeEEEEeCC----------EEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECCc
Confidence            567789999999663          34444443333221  1    2334332  344433  5789888774

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=3.6  Score=31.93  Aligned_cols=94  Identities=12%  Similarity=0.103  Sum_probs=49.8

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeee------CCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCC
Q 016328          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG------RFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGP  188 (391)
Q Consensus       116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~------~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  188 (391)
                      +++.+++.+|+|-|.        .+|+++.....+..      -+.+|..   -..+... .++++|+|-|         
T Consensus        13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~~---IDAAf~~~~~~~~yffkg---------   72 (192)
T d1pexa_          13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNR---IDAAYEHPSHDLIFIFRG---------   72 (192)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSS---CCEEEEETTTTEEEEEET---------
T ss_pred             EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCCc---ccceEEEcCCCEEEEEcC---------
Confidence            566789999999773        35555544333321      1234331   1222222 3688998865         


Q ss_pred             cceeEEEeCCCCce---EECCC--CCCCCC-CceEEE--ECCEEEEEccC
Q 016328          189 TAHTFVLDTETKKW---QDLPP--LPVPRY-APATQL--WRGRLHVMGGS  230 (391)
Q Consensus       189 ~~~~~~yd~~~~~W---~~~~~--~~~~r~-~~~~~~--~~~~iyv~GG~  230 (391)
                       +.+++|+..+...   +.+..  +|.+-. --++..  .++++|+|-|.
T Consensus        73 -~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~  121 (192)
T d1pexa_          73 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN  121 (192)
T ss_dssp             -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT
T ss_pred             -CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC
Confidence             4678887654332   23332  222211 223333  36899999764

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=4  Score=31.68  Aligned_cols=53  Identities=11%  Similarity=0.126  Sum_probs=30.4

Q ss_pred             EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEEC------CCCCCCCCCceEEEE--CCEEEEEccC
Q 016328          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL------PPLPVPRYAPATQLW--RGRLHVMGGS  230 (391)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~------~~~~~~r~~~~~~~~--~~~iyv~GG~  230 (391)
                      +++..++++|+|=|          ..+|+++.....+...      +.+|...  -++.+.  ++++|+|=|.
T Consensus        13 Av~~~~g~~y~Fkg----------~~~wr~~~~~~~~~p~~i~~~w~~lp~~I--DAAf~~~~~~~~yffkg~   73 (192)
T d1pexa_          13 AITSLRGETMIFKD----------RFFWRLHPQQVDAELFLTKSFWPELPNRI--DAAYEHPSHDLIFIFRGR   73 (192)
T ss_dssp             EEEEETTEEEEEET----------TEEEEECSSSSCCEEEEHHHHCTTSCSSC--CEEEEETTTTEEEEEETT
T ss_pred             EEEEcCCeEEEEEC----------CEEEEEcCCCCCCcccchhhhCcCCCCcc--cceEEEcCCCEEEEEcCC
Confidence            57778999999955          4456666554443321      2344322  233333  6778877664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.50  E-value=1.3  Score=37.73  Aligned_cols=53  Identities=11%  Similarity=0.044  Sum_probs=28.6

Q ss_pred             eeEEEECCCCCeeeCCCCCCCCCcceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceE
Q 016328          139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ  203 (391)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~  203 (391)
                      .+..+|..+..-........    ....++.  .++.+++.|+.+        ..+..||..+....
T Consensus       186 ~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d--------~~i~i~~~~~~~~~  240 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLSIED----GVTTVAVSPGDGKYIAAGSLD--------RAVRVWDSETGFLV  240 (388)
T ss_dssp             EEEEEETTTTEEEEEEECSS----CEEEEEECSTTCCEEEEEETT--------SCEEEEETTTCCEE
T ss_pred             eeeeeecccccccccccccc----ccccccccCCCCCeEEEEcCC--------CeEEEeecccCccc
Confidence            47788887665443322221    1122222  256677777654        34667888776543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=5.3  Score=32.39  Aligned_cols=172  Identities=14%  Similarity=0.103  Sum_probs=81.5

Q ss_pred             eeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE
Q 016328          139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ  218 (391)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  218 (391)
                      .+..++..+.+.........    ............++.|+.+        ..+..+|+...+-.  ..+..........
T Consensus       118 ~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d--------~~i~~~d~~~~~~~--~~~~~~~~~~~~~  183 (342)
T d2ovrb2         118 TLRVWDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGAYD--------FMVKVWDPETETCL--HTLQGHTNRVYSL  183 (342)
T ss_dssp             EEEEEESSSCCEEEEEECCS----SCEEEEEECSSCEEEEETT--------SCEEEEEGGGTEEE--EEECCCSSCEEEE
T ss_pred             eEEEeecccccceeeeeccc----ccceeeccccceeeeecCC--------CeEEEeecccceee--EEEcCcccccccc
Confidence            47788887776555322221    1223334445555666543        33456676544321  1111112223344


Q ss_pred             EECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccc
Q 016328          219 LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK  298 (391)
Q Consensus       219 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~  298 (391)
                      ..++..++.|+.++     .+..|++       ...+-.........  ...++..++.+++.|+.++.           
T Consensus       184 ~~~~~~l~s~~~dg-----~i~~~d~-------~~~~~~~~~~~~~~--~v~~~~~~~~~l~s~s~d~~-----------  238 (342)
T d2ovrb2         184 QFDGIHVVSGSLDT-----SIRVWDV-------ETGNCIHTLTGHQS--LTSGMELKDNILVSGNADST-----------  238 (342)
T ss_dssp             EECSSEEEEEETTS-----CEEEEET-------TTCCEEEEECCCCS--CEEEEEEETTEEEEEETTSC-----------
T ss_pred             cCCCCEEEEEeCCC-----eEEEeec-------ccceeeeEeccccc--ceeEEecCCCEEEEEcCCCE-----------
Confidence            55777777777643     3445542       22221111111111  12344455566777776532           


Q ss_pred             cCcCCceecCcEEEEc-CcC-cEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328          299 CSRRNEVVYDDVYMLD-DEM-KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (391)
Q Consensus       299 ~~~~~~~~~~~v~~~d-~~~-~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~  374 (391)
                                 +..+| ... ....+..... ... ....+..++.+++.|+.++            .|..||..+.+
T Consensus       239 -----------i~iwd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~s~s~Dg------------~i~iwd~~tg~  291 (342)
T d2ovrb2         239 -----------VKIWDIKTGQCLQTLQGPNK-HQS-AVTCLQFNKNFVITSSDDG------------TVKLWDLKTGE  291 (342)
T ss_dssp             -----------EEEEETTTCCEEEEECSTTS-CSS-CEEEEEECSSEEEEEETTS------------EEEEEETTTCC
T ss_pred             -----------EEEEecccccccccccccce-eee-ceeecccCCCeeEEEcCCC------------EEEEEECCCCC
Confidence                       66666 333 3333322221 111 2334566778888888653            46666766554

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=5.1  Score=31.11  Aligned_cols=136  Identities=15%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceeEEEECCC---------CCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCC
Q 016328          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTD---------NTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQC  185 (391)
Q Consensus       116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~---------~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~  185 (391)
                      +++.+++.+|+|-|.        ..|+++...         +.|..   +|.+.   ..+... .++++|+|-|      
T Consensus        16 Av~~~~G~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~g---lp~~I---DAAf~~~~~~~~yfFkG------   75 (195)
T d1su3a2          16 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQ---LPNGL---EAAYEFADRDEVRFFKG------   75 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTT---SCSSC---CEEEEEGGGTEEEEEET------
T ss_pred             EEEEcCCeEEEEeCC--------EEEEeeCCCCccCccchHhhCcC---CCCcc---cceEEecCCcEEEEECC------
Confidence            566789999999874        133433333         33432   33321   222222 2589999965      


Q ss_pred             CCCcceeEEEeCCCCce---EECC---CCCCCCCCc-eEEEE--CCEEEEEccCCCCccCCCccceEeeeecCCcc--cC
Q 016328          186 RGPTAHTFVLDTETKKW---QDLP---PLPVPRYAP-ATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL--EK  254 (391)
Q Consensus       186 ~~~~~~~~~yd~~~~~W---~~~~---~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~--~~  254 (391)
                          +..++|+-.+...   ..+.   .+|.....- ++...  ++++|+|-|..--.++.....-+    ..=|+  .+
T Consensus        76 ----~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~~y~ry~~~~~~vd----~gyPk~I~~  147 (195)
T d1su3a2          76 ----NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMD----PGYPKMIAH  147 (195)
T ss_dssp             ----TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETTEEEEEETTTTEEC----SSCSEEHHH
T ss_pred             ----cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCCEEEEEeccCcccc----CCccccccc
Confidence                5678887432211   1111   123222222 33333  57999998753222211111100    00011  22


Q ss_pred             CceeecCCCCCCcceeEEEECCEEEEEeCC
Q 016328          255 EWRTEIPIPRGGPHRACVVVDDRLLVIGGQ  284 (391)
Q Consensus       255 ~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~  284 (391)
                      .|.-   +|..-.  ++...++++|+|-|.
T Consensus       148 ~w~G---vp~~iD--AAf~~~g~~YfFkg~  172 (195)
T d1su3a2         148 DFPG---IGHKVD--AVFMKDGFFYFFHGT  172 (195)
T ss_dssp             HSTT---SCSCCS--EEEEETTEEEEEETT
T ss_pred             ccCC---CCCCcc--EEEEECCeEEEEECC
Confidence            3433   333332  445679999999885

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=2.9  Score=32.63  Aligned_cols=53  Identities=13%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceE----EC----CCCCCCCCCceEEE--ECCEEEEEccC
Q 016328          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ----DL----PPLPVPRYAPATQL--WRGRLHVMGGS  230 (391)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~----~~----~~~~~~r~~~~~~~--~~~~iyv~GG~  230 (391)
                      +++..+|++|+|-|          ...|+|+.......    .+    +.+|..  -=++..  .++++|+|-|.
T Consensus        11 Av~~~~G~~y~Fkg----------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~--IDAAf~~~~~~k~yfFkg~   73 (195)
T d1itva_          11 AIAEIGNQLYLFKD----------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSGR   73 (195)
T ss_dssp             EEEEETTEEEEEET----------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEETT
T ss_pred             eEEEeCCEEEEEEC----------CEEEEEeCCCCCcCCCcEEeeeecCCCCCC--ccEEEEECCCCEEEEEecC
Confidence            46678999999965          45666765433221    11    234332  223333  25778888654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.83  E-value=2.7  Score=35.04  Aligned_cols=122  Identities=12%  Similarity=-0.044  Sum_probs=67.7

Q ss_pred             cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-
Q 016328           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-  169 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-  169 (391)
                      .++.+|..+....+++.  ..+....+-.-+++.++++|.+..    ..+.++|..+++-+.+..-+.    .-..++. 
T Consensus        25 ~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~~~~----~v~~~~~s   94 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEENLG----NVFAMGVD   94 (360)
T ss_dssp             EEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCCCCC----SEEEEEEC
T ss_pred             eEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeCCCc----eEEeeeec
Confidence            67778888777776532  222222112226776666654422    248899999988877644332    1223333 


Q ss_pred             eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccC
Q 016328          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS  230 (391)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~  230 (391)
                      -+++.+++++.        ...++.++..+.+...+...........+..-+++.+++.+.
T Consensus        95 pdg~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          95 RNGKFAVVAND--------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             TTSSEEEEEET--------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             ccccccceecc--------ccccccccccccceeeeeecccccccchhhccceeeeeeecc
Confidence            35556666553        356788898887765544333333333334446666666543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=86.17  E-value=8.3  Score=32.12  Aligned_cols=98  Identities=10%  Similarity=0.012  Sum_probs=54.3

Q ss_pred             CCEEEEEeccCCC-CCCcceeEEEECCCCCeeeCCCCCC-CCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeEEEe
Q 016328          121 KNLLYVFAGYGSI-DYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLD  196 (391)
Q Consensus       121 ~~~vyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (391)
                      ++.+|+....... ......+.+||+.++.++....... .......++++.  ++.+|+..+         ...+.++|
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---------~~~i~~~~   98 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---------RLGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---------TTEEEEEE
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---------CCeEEEEe
Confidence            5688987543211 1123469999999998876532211 001112345554  457888754         34578999


Q ss_pred             CCCCceEECCCCCCCCC--C-ceEE-EECCEEEEE
Q 016328          197 TETKKWQDLPPLPVPRY--A-PATQ-LWRGRLHVM  227 (391)
Q Consensus       197 ~~~~~W~~~~~~~~~r~--~-~~~~-~~~~~iyv~  227 (391)
                      ++....+.+......+.  . .-++ --++.||+.
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvt  133 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT  133 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEe
Confidence            98876555443322221  1 2223 346789986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=7.1  Score=30.65  Aligned_cols=87  Identities=9%  Similarity=0.087  Sum_probs=42.7

Q ss_pred             eeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE
Q 016328          139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ  218 (391)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  218 (391)
                      .+..+|..+.+-...  +..  ..........++..++.|+.++        .+..||+.+.+-......  ........
T Consensus       159 ~i~~~d~~~~~~~~~--~~~--~~~~v~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~--~~~~v~~~  224 (293)
T d1p22a2         159 TIKVWNTSTCEFVRT--LNG--HKRGIACLQYRDRLVVSGSSDN--------TIRLWDIECGACLRVLEG--HEELVRCI  224 (293)
T ss_dssp             EEEEEETTTCCEEEE--EEC--CSSCEEEEEEETTEEEEEETTS--------CEEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred             ceeeecCCCCcEEEE--Ecc--cccccccccCCCCeEEEecCCC--------EEEEEecccceeeeeecc--cceeeeec
Confidence            478888876653321  111  1111222233444566666543        466788877654433221  11122334


Q ss_pred             EECCEEEEEccCCCCccCCCccceEe
Q 016328          219 LWRGRLHVMGGSGENRYTPEVDHWSL  244 (391)
Q Consensus       219 ~~~~~iyv~GG~~~~~~~~~~~~~~~  244 (391)
                      ..++..++.|+.++     .+..|++
T Consensus       225 ~~~~~~l~sg~~dg-----~i~iwd~  245 (293)
T d1p22a2         225 RFDNKRIVSGAYDG-----KIKVWDL  245 (293)
T ss_dssp             ECCSSEEEEEETTS-----CEEEEEH
T ss_pred             cccceEEEEEcCCC-----EEEEEEC
Confidence            45666677776543     3555654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.16  E-value=5  Score=33.17  Aligned_cols=81  Identities=10%  Similarity=-0.055  Sum_probs=45.6

Q ss_pred             eeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE
Q 016328          139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ  218 (391)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  218 (391)
                      .+++||..+++..+++.  .  .+.....-.-+++..++.|.+.      -..++.||.++.+-..+..-...  ..+++
T Consensus        25 ~v~v~d~~~~~~~~~~~--~--~~v~~~~~spDg~~l~~~~~~~------g~~v~v~d~~~~~~~~~~~~~~~--v~~~~   92 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPE--P--LRIRYVRRGGDTKVAFIHGTRE------GDFLGIYDYRTGKAEKFEENLGN--VFAMG   92 (360)
T ss_dssp             EEEEECTTSSBEEECSC--C--SCEEEEEECSSSEEEEEEEETT------EEEEEEEETTTCCEEECCCCCCS--EEEEE
T ss_pred             eEEEEECCCCcEEEccC--C--CCEEEEEECCCCCEEEEEEcCC------CCEEEEEECCCCcEEEeeCCCce--EEeee
Confidence            58888888888777632  1  2332222233676666655332      24588999999887766432221  12222


Q ss_pred             -EECCEEEEEccCC
Q 016328          219 -LWRGRLHVMGGSG  231 (391)
Q Consensus       219 -~~~~~iyv~GG~~  231 (391)
                       .-+++.+++++..
T Consensus        93 ~spdg~~l~~~~~~  106 (360)
T d1k32a3          93 VDRNGKFAVVANDR  106 (360)
T ss_dssp             ECTTSSEEEEEETT
T ss_pred             ecccccccceeccc
Confidence             2356666666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=85.13  E-value=8.8  Score=31.51  Aligned_cols=91  Identities=8%  Similarity=-0.041  Sum_probs=48.2

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      +++||+....+      ..++++|+... .+....++.   + ..+++. -++.+||.+-..+      .-.....+...
T Consensus        38 dG~l~vt~~~~------~~I~~i~p~g~-~~~~~~~~~---~-~~gla~~~dG~l~v~~~~~~------~~~~~~~~~~~  100 (302)
T d2p4oa1          38 DGTIFVTNHEV------GEIVSITPDGN-QQIHATVEG---K-VSGLAFTSNGDLVATGWNAD------SIPVVSLVKSD  100 (302)
T ss_dssp             TSCEEEEETTT------TEEEEECTTCC-EEEEEECSS---E-EEEEEECTTSCEEEEEECTT------SCEEEEEECTT
T ss_pred             CCCEEEEeCCC------CEEEEEeCCCC-EEEEEcCCC---C-cceEEEcCCCCeEEEecCCc------eEEEEEecccc
Confidence            67899876432      45899998865 444444433   2 233443 4678998863211      12223344444


Q ss_pred             CceEECCCCCCCCCCceEEE-ECCEEEEEc
Q 016328          200 KKWQDLPPLPVPRYAPATQL-WRGRLHVMG  228 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~~-~~~~iyv~G  228 (391)
                      .+-+.+...+........+. -++++|+.-
T Consensus       101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~  130 (302)
T d2p4oa1         101 GTVETLLTLPDAIFLNGITPLSDTQYLTAD  130 (302)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEE
T ss_pred             cceeeccccCCccccceeEEccCCCEEeec
Confidence            44455444444443344443 467777763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.01  E-value=8.9  Score=30.67  Aligned_cols=89  Identities=15%  Similarity=0.030  Sum_probs=52.6

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++++|+....      ...+.+||++.+..........   ....++++ -++.|||.--.        ...+.+|++..
T Consensus       150 ~g~~~v~~~~------~~~i~~~d~~~~~~~~~~~~~~---~~p~gi~~d~~g~l~vsd~~--------~~~i~~~~~~~  212 (260)
T d1rwia_         150 SGNVYVTDTD------NNRVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHN--------TNQVVKLLAGS  212 (260)
T ss_dssp             TCCEEEEEGG------GTEEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETT--------TTEEEEECTTC
T ss_pred             CCCEeeeccc------cccccccccccceeeeeecccc---CCCccceeeeeeeeeeeecC--------CCEEEEEeCCC
Confidence            5578887532      2358899998876555432222   22345555 36789987421        46788999988


Q ss_pred             CceEECCCCCCCCCCceEEEE-CCEEEEE
Q 016328          200 KKWQDLPPLPVPRYAPATQLW-RGRLHVM  227 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~  227 (391)
                      ...+....-...+ -+.++.- ++.|||.
T Consensus       213 ~~~~~~~~~~~~~-P~~i~~d~~g~l~va  240 (260)
T d1rwia_         213 TTSTVLPFTGLNT-PLAVAVDSDRTVYVA  240 (260)
T ss_dssp             SCCEECCCCSCCC-EEEEEECTTCCEEEE
T ss_pred             CeEEEEccCCCCC-eEEEEEeCCCCEEEE
Confidence            7766664322111 1233333 5678887

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=82.44  E-value=7.4  Score=35.59  Aligned_cols=79  Identities=10%  Similarity=0.035  Sum_probs=45.8

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeE
Q 016328          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF  193 (391)
Q Consensus       116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  193 (391)
                      ..+..+++||+...       ...+..+|..+.+  |+....-+........+-.+.++.+++- +......  ..-.+.
T Consensus       112 ~~~~~~~~v~~~~~-------~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg-~~~~~~~--~~G~v~  181 (560)
T d1kv9a2         112 GVALWGDKVYVGTL-------DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIG-NGGAEYG--VRGFVS  181 (560)
T ss_dssp             CCEEEBTEEEEECT-------TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEEC-CBCTTTC--CBCEEE
T ss_pred             CcceeCCeEEEEeC-------CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCccccc-ccceecc--ccceEE
Confidence            44566788877643       2358889988874  7664322221122334556788877763 3222111  135688


Q ss_pred             EEeCCCCc--eEE
Q 016328          194 VLDTETKK--WQD  204 (391)
Q Consensus       194 ~yd~~~~~--W~~  204 (391)
                      .||.+|.+  |+.
T Consensus       182 a~D~~TG~~~W~~  194 (560)
T d1kv9a2         182 AYDADTGKLAWRF  194 (560)
T ss_dssp             EEETTTCCEEEEE
T ss_pred             EEECCCceEEeee
Confidence            99999875  764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.21  E-value=3.4  Score=34.91  Aligned_cols=92  Identities=7%  Similarity=-0.017  Sum_probs=45.0

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (391)
                      ++++++.|+.++      .+.++|..+.+......-..  .. -.++.. .++...+.|+.        ...+..+|..+
T Consensus       132 ~~~~l~s~~~dg------~v~i~~~~~~~~~~~~~~h~--~~-v~~~~~~~~~~~~~~~~~--------~~~i~~~d~~~  194 (388)
T d1erja_         132 DGKFLATGAEDR------LIRIWDIENRKIVMILQGHE--QD-IYSLDYFPSGDKLVSGSG--------DRTVRIWDLRT  194 (388)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEECCCS--SC-EEEEEECTTSSEEEEEET--------TSEEEEEETTT
T ss_pred             CCCcceeccccc------cccccccccccccccccccc--cc-cccccccccccccccccc--------ceeeeeeeccc
Confidence            456677777542      37888888776655322221  11 122222 23444555543        34567788776


Q ss_pred             CceEECCCCCCCCCCceEEE--ECCEEEEEccCC
Q 016328          200 KKWQDLPPLPVPRYAPATQL--WRGRLHVMGGSG  231 (391)
Q Consensus       200 ~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~  231 (391)
                      ..-.........  ...+..  .++.+++.|+.+
T Consensus       195 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d  226 (388)
T d1erja_         195 GQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLD  226 (388)
T ss_dssp             TEEEEEEECSSC--EEEEEECSTTCCEEEEEETT
T ss_pred             cccccccccccc--cccccccCCCCCeEEEEcCC
Confidence            553332221111  111222  255677777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.72  E-value=8.5  Score=31.16  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=16.9

Q ss_pred             cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (391)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (391)
                      ++.+.+.|+.++     .+-.||..+++
T Consensus        66 ~~~~l~sgs~Dg-----~v~iWd~~~~~   88 (340)
T d1tbga_          66 DSRLLVSASQDG-----KLIIWDSYTTN   88 (340)
T ss_dssp             TSSEEEEEETTT-----EEEEEETTTTE
T ss_pred             CCCEEEEEECCC-----ceeeeecccce
Confidence            566677777666     67788888877

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.41  E-value=3.9  Score=33.16  Aligned_cols=86  Identities=9%  Similarity=-0.062  Sum_probs=41.7

Q ss_pred             cccccccccCceEEc-cCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEE
Q 016328           91 TFQDLPAPELKWEKM-KAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (391)
Q Consensus        91 ~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~  167 (391)
                      .+..||..++..... ..+......-..+.+  ++..++.|+.+      ..+.+||+.+.+..............-.++
T Consensus       202 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  275 (299)
T d1nr0a2         202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHPIIIKGAHAMSSVNSV  275 (299)
T ss_dssp             CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCCEEETTSSTTSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccceEEEcCC------CEEEEEECCCCCcceEEEecCCCCCcEEEE
Confidence            566777766544322 222222222222222  56777777765      248889988765543221111101112233


Q ss_pred             EEeCCEEEEEeCccC
Q 016328          168 VTDGRYIYVVTGQYG  182 (391)
Q Consensus       168 ~~~~~~iyv~GG~~~  182 (391)
                      +..++..++.||.++
T Consensus       276 ~~~~~~~l~s~s~D~  290 (299)
T d1nr0a2         276 IWLNETTIVSAGQDS  290 (299)
T ss_dssp             EEEETTEEEEEETTS
T ss_pred             EECCCCEEEEEeCCC
Confidence            444555666777544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.07  E-value=11  Score=29.50  Aligned_cols=29  Identities=10%  Similarity=0.145  Sum_probs=19.0

Q ss_pred             EECCEEEEEeccCCCCCCcceeEEEECCCCCeeeC
Q 016328          119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR  153 (391)
Q Consensus       119 ~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~  153 (391)
                      ..++++++.|+.+.      .+.+++...+.....
T Consensus        62 ~~~~~~l~s~s~D~------~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          62 QYDERVIITGSSDS------TVRVWDVNTGEMLNT   90 (293)
T ss_dssp             ECCSSEEEEEETTS------CEEEEESSSCCEEEE
T ss_pred             ecccceeecccccc------ccccccccccccccc
Confidence            34566677777642      377888887776554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.04  E-value=9.7  Score=31.30  Aligned_cols=88  Identities=11%  Similarity=0.026  Sum_probs=52.0

Q ss_pred             CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (391)
Q Consensus       121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (391)
                      ++.||.+=-      ....++++|+++++-+.. .+|.   .....+..-++.+++..          .+.+.+||+++.
T Consensus        29 ~~~l~wvDi------~~~~I~r~d~~~g~~~~~-~~~~---~~~~i~~~~dg~l~va~----------~~gl~~~d~~tg   88 (295)
T d2ghsa1          29 SGTAWWFNI------LERELHELHLASGRKTVH-ALPF---MGSALAKISDSKQLIAS----------DDGLFLRDTATG   88 (295)
T ss_dssp             TTEEEEEEG------GGTEEEEEETTTTEEEEE-ECSS---CEEEEEEEETTEEEEEE----------TTEEEEEETTTC
T ss_pred             CCEEEEEEC------CCCEEEEEECCCCeEEEE-ECCC---CcEEEEEecCCCEEEEE----------eCccEEeecccc
Confidence            456776521      124599999998865543 2333   22233344677887753          245889999999


Q ss_pred             ceEECCCCCCC----CCCceEEEECCEEEEEc
Q 016328          201 KWQDLPPLPVP----RYAPATQLWRGRLHVMG  228 (391)
Q Consensus       201 ~W~~~~~~~~~----r~~~~~~~~~~~iyv~G  228 (391)
                      +++.+.+....    |.....+--++.||+--
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~  120 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGT  120 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEE
T ss_pred             eeeEEeeeecCCCcccceeeEECCCCCEEEEe
Confidence            99887644322    22223333467777653