Citrus Sinensis ID: 016350

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHcccHEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEc
Coil and Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdveeTTALVQNgteventnpswklsFPHVLVATLSSFLFGYhlgvvneplesisldlgfngntLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVvgtgmglgPTVAALYVTevsppfvrgtyGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCaesphwlykkgrTAEAEAEFEKLLGGSHVKSSLAelskldrgddgdivKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAsssyipgsasLYLSVGGMLM
Flexible Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdvEETTALvqngteventnpsWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKllggshvksslaelskldrgddgDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAasssyipgsASLYLSVGGMLM
Low Complexity Region (SEG)
MWGRQREASMMYKrtssrdrsstFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM
Disordered region (IsUnstruct)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLL*****************GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV*****
Disordered Region (DISOPRED)
************************************************SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSS********************LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM
Disordered Region (DISEMBL)
**************************EETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM
Disordered Region (DISPRO)
*****************************************TNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
Q9FYG3	493	Probable plastidic glucos	yes	no	1.0	0.793	0.716	1e-164
Q2V4B9	495	Probable plastidic glucos	no	no	0.987	0.779	0.667	1e-147
Q0WVE9	524	Probable plastidic glucos	no	no	0.884	0.660	0.436	4e-77
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.887	0.635	0.4	2e-68
Q9FRL3	487	Sugar transporter ERD6-li	no	no	0.795	0.638	0.315	6e-35
P87110	557	Myo-inositol transporter	yes	no	0.838	0.588	0.306	8e-35
Q93YP9	488	Sugar transporter ERD6-li	no	no	0.780	0.625	0.322	1e-34
P46333	461	Probable metabolite trans	yes	no	0.769	0.652	0.323	3e-34
Q9ZQP6	580	Probable inositol transpo	no	no	0.810	0.546	0.307	2e-33
C0SPB2	457	Putative metabolite trans	no	no	0.764	0.654	0.312	2e-33

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  579 bits (1493), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/395 (71%), Positives = 332/395 (84%), Gaps = 4/395 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           SF  MA +MA+QV A+SSY+P  ++L LSVGG L+
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLV 395

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  520 bits (1339), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/391 (66%), Positives = 307/391 (78%), Gaps = 5/391 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M GR  +     KR  S++  S  D  ET   +  GT  +  NPSWK S PHVLVA+L+S
Sbjct: 11  MRGRHID-----KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTS 65

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
            LFGYHLGVVNE LESIS+DLGF+GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRA
Sbjct: 66  LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GAS+SA+T +L+GMLLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+
Sbjct: 126 FQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
             QIATC+GL+GSL  GIP K+  GWWRICFW+S VPAA+L + M  C ESP WL+K+GR
Sbjct: 186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
            AEAEA FEKLLGGS+VK+++AEL K DRGDD D  K  ELL+GR FRVVFIGSTLFALQ
Sbjct: 246 AAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFK AG+ S  AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  
Sbjct: 306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           MAVS+ +Q  A +S      +L+LSVGGML+
Sbjct: 366 MAVSLGLQAIAYTSLPSPFGTLFLSVGGMLL 396

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  288 bits (738), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/348 (43%), Positives = 225/348 (64%), Gaps = 2/348 (0%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
           W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct: 76  WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct: 136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
           ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct: 196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
            F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct: 256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query: 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
            H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct: 316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query: 344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           L+DK GRK LL  S+  MAVSM + V A    +    S  LS+ G LM
Sbjct: 376 LIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLM 423

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  259 bits (663), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 211/355 (59%), Gaps = 8/355 (2%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S +  R+     SS  D EE   L   G              P V VA L + LFGYHLG
Sbjct: 72  SSVKARSVRAQASSDGDEEEAIPLRSEGKSSGTV-------LPFVGVACLGAILFGYHLG 124

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G +AD  GR R FQL A+P+
Sbjct: 125 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPL 184

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
            IGA + AT +++  M++GR + G G+G+   +  LY++E+SP  +RG  G+  Q+  C+
Sbjct: 185 AIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICI 244

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           G++ +L+ G+P+     WWR  F V+++P+ +L + M F  ESP WL ++G+ +EAE   
Sbjct: 245 GILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAI 304

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           + L G   V   + +LS   +G       + +L   R+++VV +G+ LF  QQL+GINA+
Sbjct: 305 KTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAV 364

Query: 309 FYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362
            Y+S+SVF+SAG+ S + A+  VG +N+ G+ VA  LMDK+GRK+LL  SF  MA
Sbjct: 365 VYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMA 419

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1

 Score =  148 bits (374), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 174/323 (53%), Gaps = 12/323 (3%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
           VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct: 52  VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108

Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
           A+ +GR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct: 109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168

Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
             +RG  G+  Q++  +G+M + L+G+ V      WRI   + I+P  +L   + F  ES
Sbjct: 169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223

Query: 232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
           P WL K G T E E   + L G  + +   + E+ + +      + V+F +L   R++  
Sbjct: 224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283

Query: 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
           + +G  L  LQQL GIN + ++SS++F+SAG++S  A  F VG   ++ + ++  L+DK 
Sbjct: 284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343

Query: 349 GRKALLQWSFFSMAVSMAIQVAA 371
           GR+ LL  S   M +S+ I  AA
Sbjct: 344 GRRLLLTISSVGMTISLVIVAAA 366

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itr2 PE=2 SV=1

 Score =  148 bits (373), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 181/365 (49%), Gaps = 37/365 (10%)

Query: 18  RDRSSTFDVEETTALVQNGTEVENTNPS-----------WKLSFPHVLVATLSSFLFGYH 66
           R+  S  + EE  A      EV + N             W LS     VA +S  LFGY 
Sbjct: 43  REIPSLPNEEEANATDPQANEVADENGEGFEAEKISSWIWVLS----AVAGISGLLFGYD 98

Query: 67  LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126
            GV++  L  +  DLG   ++  + L+ S     A I +T SGW+AD VGR+R   LCA 
Sbjct: 99  TGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLL-LCAD 157

Query: 127 PM-IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA 185
            + +IG+ I A +RN+  M++GRF+VG G+GL   +  +Y+TE++P  +RG       + 
Sbjct: 158 AIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVF 217

Query: 186 TCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE 245
              G + +  +    + +   WRI F +   PA    +++ +  ESP +L +     +  
Sbjct: 218 ITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFWTPESPRYLLRHNHVEKV- 276

Query: 246 AEFEKLLGGSHVKSSLAELS-KLDRGDDGDIVKFEELLYGRHF--------------RVV 290
               K+L   H ++  AE++ K+    +G  V F E    +HF              R +
Sbjct: 277 ---YKILSRIHPEAKPAEIAYKVSLIQEGVKVDFPEGNKFQHFFHSLKVLFTVPSNRRSL 333

Query: 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
           FIG  L   QQ SG NAI YFS+ +F+S G  + ++ ++ VG  N + ++VA + +D++G
Sbjct: 334 FIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKNSISVSIVVGATNFVFTIVAFMFIDRIG 393

Query: 350 RKALL 354
           R+ +L
Sbjct: 394 RRRIL 398

Transporter for myo-inositol.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 175/329 (53%), Gaps = 24/329 (7%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
           VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct: 53  VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109

Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
           A+ VGR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct: 110 AEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 169

Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
             +RG  G+  Q++  +G+M + L+G+ V      WRI   + ++P  +L   + F  ES
Sbjct: 170 QTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPES 224

Query: 232 PHWLYKKGRTAEAEAEFEKLLG--------GSHVKSSLAELSKLDRGDDGDIVKFEELLY 283
           P WL K G T + E   + L G         + +K S+A  SK         V+F +L  
Sbjct: 225 PRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSA------VRFVDLKR 278

Query: 284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAM 342
            R++  + +G  L ALQQL GIN + ++SS++F+SAG+ SS +A   VG+  ++ + +A 
Sbjct: 279 RRYYFPLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIAT 338

Query: 343 VLMDKLGRKALLQWSFFSMAVSMAIQVAA 371
            L+DK GR+ LL  S   M +S+ I   A
Sbjct: 339 WLVDKAGRRLLLMISSIGMTISLVIVAVA 367

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 170/315 (53%), Gaps = 14/315 (4%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  L  I+ D+     TL EGLVVSM L GA  GS LSG  +D  GR
Sbjct: 16  LGGLLYGYDTGVISGALLFINNDIPLT--TLTEGLVVSMLLLGAIFGSALSGTCSDRWGR 73

Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRG 176
           R+   + ++  IIGA   A ++  IGML+  R ++G  +G    +  +Y++E++P  +RG
Sbjct: 74  RKVVFVLSIIFIIGALACAFSQT-IGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132

Query: 177 TYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLY 236
           T G    +    G++ + ++          WR    ++ VPA +L + + F  ESP WL 
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESPRWLV 191

Query: 237 KKGRTAEAEAEFEKLLGGSHVKSSLA-ELSKLDRGDDGDIVKFEELLYGRHFR-VVFIGS 294
           K+G    +E E  +++  +H    +  EL+++ +G+         +L  +  R ++ IG 
Sbjct: 192 KRG----SEEEARRIMNITHDPKDIEMELAEMKQGEAEKKETTLGVLKAKWIRPMLLIGV 247

Query: 295 TLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRK 351
            L   QQ  GIN + Y++ ++F  AGL   +S L  + +GI N++  + AM+L+D++GRK
Sbjct: 248 GLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVGRK 307

Query: 352 ALLQWSFFSMAVSMA 366
            LL W    + +S+A
Sbjct: 308 KLLIWGSVGITLSLA 322

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 170/341 (49%), Gaps = 24/341 (7%)

Query: 51  PHVLVATLSS----FLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGS 105
           P+++   LS+     LFGY+ GV+   L  I  + G  +  T  + ++VSM + GA +G+
Sbjct: 24  PYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGA 83

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            + GW  D  GRR +  +  +  ++GA +         ++LGR +VG G+G+    + LY
Sbjct: 84  AIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLY 143

Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
           ++E+SP  +RG   +   +    G   S LI +      G WR    VS +PA I    M
Sbjct: 144 ISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLM 203

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD--DGDIV--KFEEL 281
           +   ESP WLY+  R AE+    E++     V++ +A L +  R +  D DI+   F + 
Sbjct: 204 LTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDK 263

Query: 282 LYG-------RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-----LANVF 329
           L G       RH      G T+   QQ  GIN + Y+S ++ + AG +S      LA + 
Sbjct: 264 LRGALSNPVVRHGLAA--GITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALIT 321

Query: 330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370
            G+ N +GSVV+M+ +D+ GR+ L+  S F +   + I  A
Sbjct: 322 SGL-NAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAA 361

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 163/310 (52%), Gaps = 11/310 (3%)

Query: 62  LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF 121
           L+GY  GV++  +  +  +LG N  T  EGLVVS  L GA +GS  +G + D  GR++A 
Sbjct: 19  LYGYDTGVISGAILFMKKELGLNAFT--EGLVVSSLLVGAILGSGAAGKLTDRFGRKKAI 76

Query: 122 QLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF 181
              AL   IG    A   N   M+L R ++G  +G   T+  LY++E++P   RG   + 
Sbjct: 77  MAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSL 136

Query: 182 IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRT 241
            Q+   +G++ S ++     + A  WR    ++ VP+ +L + ++F  ESP WL+  G  
Sbjct: 137 NQLMITVGILLSYIVNYIFAD-AEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEE 195

Query: 242 AEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI-GSTLFALQ 300
           ++A+   EKL G   +   + ++ + ++ D+G + +    L+    R   I G  L  LQ
Sbjct: 196 SKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE----LFDPWVRPALIAGLGLAFLQ 251

Query: 301 QLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 357
           Q  G N I Y++   F + G    +S L  V +G  N+L ++VA+ ++DK+GRK LL + 
Sbjct: 252 QFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFG 311

Query: 358 FFSMAVSMAI 367
              M +S+ +
Sbjct: 312 NAGMVISLIV 321

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
27261731	489	sugar transporter [Citrus unshiu]	1.0	0.799	1.0	0.0
255546433	508	sugar transporter, putative [Ricinus com	0.997	0.767	0.779	1e-179
225445194	488	PREDICTED: probable plastidic glucose tr	0.997	0.799	0.777	1e-178
224142161	489	predicted protein [Populus trichocarpa]	1.0	0.799	0.774	1e-173
357500677	490	Sugar transporter [Medicago truncatula]	1.0	0.797	0.734	1e-169
449449521	490	PREDICTED: probable plastidic glucose tr	1.0	0.797	0.754	1e-165
15220399	493	putative plastidic glucose transporter 2	1.0	0.793	0.716	1e-163
356531285	486	PREDICTED: probable plastidic glucose tr	0.979	0.788	0.738	1e-163
356520521	486	PREDICTED: probable plastidic glucose tr	0.979	0.788	0.738	1e-162
42570243	494	putative plastidic glucose transporter 2	1.0	0.791	0.714	1e-161

>gi|27261731|gb|AAN86062.1| sugar transporter [Citrus unshiu]

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/391 (100%), Positives = 391/391 (100%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS
Sbjct: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA
Sbjct: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR
Sbjct: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS
Sbjct: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           MAVSMAIQVAASSSYIPGSASLYLSVGGMLM
Sbjct: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546433|ref|XP_002514276.1| sugar transporter, putative [Ricinus communis] gi|223546732|gb|EEF48230.1| sugar transporter, putative [Ricinus communis]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/390 (77%), Positives = 342/390 (87%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQRE+  MYKR  SRD +   D+E+ +AL+QN  + E TNPSW LSFPHV+ AT+SS
Sbjct: 14  MWGRQRESKSMYKRMPSRDYTKNSDIEDDSALIQNNMDAEVTNPSWSLSFPHVVAATISS 73

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS CLGGAFIGS  SGWIADGVGRRRA
Sbjct: 74  FLFGYHLGVVNEPLESISIDLGFNGNTLAEGLVVSTCLGGAFIGSLFSGWIADGVGRRRA 133

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT  L GML+GRF+VGTGMGLGP VAALYVTEVSP FVRGTYG+
Sbjct: 134 FQLCALPMIIGASVSATTTTLAGMLVGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGS 193

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMG+L IGIPV+EI GWWRICFWVS +PA +L LAMVFC ESPHWLYK+GR
Sbjct: 194 FIQIATCLGLMGALFIGIPVREINGWWRICFWVSAIPAGLLALAMVFCVESPHWLYKQGR 253

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           +AEAE EFE+LLGG+HV+ ++ ELSK+DRGD+ D +   ELLYGRHFRVVFIGSTLFALQ
Sbjct: 254 SAEAEIEFERLLGGAHVRYAIQELSKVDRGDNIDNITLSELLYGRHFRVVFIGSTLFALQ 313

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AMVLMD+LGRK LL WSFF 
Sbjct: 314 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLTGSLAAMVLMDRLGRKVLLLWSFFG 373

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGML 390
           MAVSM +QVA +SSY+ GS +L+LSVGGML
Sbjct: 374 MAVSMGLQVAGASSYMAGSGALFLSVGGML 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445194|ref|XP_002284229.1| PREDICTED: probable plastidic glucose transporter 2 [Vitis vinifera] gi|297738801|emb|CBI28046.3| unnamed protein product [Vitis vinifera] gi|310877904|gb|ADP37183.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/391 (77%), Positives = 347/391 (88%), Gaps = 1/391 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQ EAS+ YKR SSRD +   D+EE++AL QNG   E TNPSWKLS PH++VAT+SS
Sbjct: 1   MWGRQGEASVTYKRVSSRDNTKV-DMEESSALFQNGMGQEITNPSWKLSLPHIIVATISS 59

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE+I+LDLGF+GNTLAEGLVVS CLGGAFIGS  SGWIADG+GRRRA
Sbjct: 60  FLFGYHLGVVNEPLETIALDLGFSGNTLAEGLVVSTCLGGAFIGSLFSGWIADGIGRRRA 119

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT++L GML+GRF+VGTGMG+GP VA+LYVTEVSP FVRGTYG+
Sbjct: 120 FQLCALPMIIGASVSATTKSLEGMLIGRFLVGTGMGVGPPVASLYVTEVSPAFVRGTYGS 179

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQ+ATCLGLMG+L IGIPVK I GWWRICFW++ VPA IL  AM+FCAESPHWLYKKGR
Sbjct: 180 FIQLATCLGLMGALFIGIPVKAIIGWWRICFWIATVPAGILAFAMMFCAESPHWLYKKGR 239

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
            AEAEAEFEKLLGGSHVK ++A+L K DRGD+ D VK  ELLYGRHFRVVFIGSTLFALQ
Sbjct: 240 IAEAEAEFEKLLGGSHVKFAMADLHKSDRGDETDAVKLSELLYGRHFRVVFIGSTLFALQ 299

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AM+LMDKLGRKALL WSFF 
Sbjct: 300 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLSGSITAMILMDKLGRKALLVWSFFG 359

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           MAV+M++QVA +SS+I GS +++LSV GML+
Sbjct: 360 MAVAMSVQVAGASSFISGSGAVFLSVSGMLL 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142161|ref|XP_002324427.1| predicted protein [Populus trichocarpa] gi|222865861|gb|EEF02992.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/391 (77%), Positives = 338/391 (86%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M G +     MYKR SSRD +   DVE+ + + Q+  + E TNPSW+LSFPHVL AT+S+
Sbjct: 1   MRGHRTGEYSMYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATISA 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS CLGGA IGS  SGWIADG+GRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGGALIGSLFSGWIADGIGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMI+GASISATT+ L GMLLGR +VGTGMGLGP V++LYVTEVSP FVRGTYG+
Sbjct: 121 FQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +L IGIPV+EIAGWWRICFWVS VPA IL L+M+FCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALFIGIPVREIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           TAEAEAEFE+LLGG+HVK ++ ELSKLDRGDD D V F ELLYGR FRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFERLLGGAHVKFAMQELSKLDRGDDSDDVHFSELLYGRCFRVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSS+VFK+AG+ S LANVFVGIANL GSV+AMVLMDK+GRK LL WSF  
Sbjct: 301 QLSGINAIFYFSSTVFKNAGVPSDLANVFVGIANLSGSVIAMVLMDKMGRKVLLLWSFSG 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           MAVSM +QV A+SS + GS +LYLSVGGMLM
Sbjct: 361 MAVSMGLQVVAASSNMLGSGTLYLSVGGMLM 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500677|ref|XP_003620627.1| Sugar transporter [Medicago truncatula] gi|355495642|gb|AES76845.1| Sugar transporter [Medicago truncatula]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 288/392 (73%), Positives = 333/392 (84%), Gaps = 1/392 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSS-TFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLS 59
           MWG  RE+S++YKRT S+D S+   DVEE   L+ N  + E TNPSWKLS PHVLVAT++
Sbjct: 1   MWGHHRESSIVYKRTPSKDNSNMEEDVEENLDLLDNFIDKETTNPSWKLSLPHVLVATIT 60

Query: 60  SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119
           SFLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS+CLGGA  G  LSGWIAD VGRRR
Sbjct: 61  SFLFGYHLGVVNEPLESISVDLGFNGNTLAEGLVVSICLGGALFGCLLSGWIADAVGRRR 120

Query: 120 AFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG 179
           AFQLCALPMIIGA++SA T NL GML+GR  VGTG+GLGP VAALYVTEVSP FVRGTYG
Sbjct: 121 AFQLCALPMIIGAAMSAATNNLFGMLVGRLFVGTGLGLGPPVAALYVTEVSPAFVRGTYG 180

Query: 180 AFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKG 239
           A IQIATC G++GSL IGIPVKEI+GWWR+CFWVS +PAAIL LAMVFCAESPHWLYK+G
Sbjct: 181 ALIQIATCFGILGSLFIGIPVKEISGWWRVCFWVSTIPAAILALAMVFCAESPHWLYKQG 240

Query: 240 RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL 299
           RTAEAEAEFE+LLG S  K ++++LSK+DRG+D D VKF ELL+G H +VVFIGSTLFAL
Sbjct: 241 RTAEAEAEFERLLGVSEAKFAMSQLSKVDRGEDTDTVKFSELLHGHHSKVVFIGSTLFAL 300

Query: 300 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359
           QQLSGINA+FYFSS+VFKSAG+ S  ANV +G+ANL GS+++  LMDKLGRK LL WSFF
Sbjct: 301 QQLSGINAVFYFSSTVFKSAGVPSDFANVCIGVANLTGSIISTGLMDKLGRKVLLFWSFF 360

Query: 360 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
            MA+SM IQ   +S+ +P + +LYLSVGGML+
Sbjct: 361 GMAISMIIQATGASTLLPTAGALYLSVGGMLL 392

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449521|ref|XP_004142513.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus] gi|449522117|ref|XP_004168074.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/391 (75%), Positives = 332/391 (84%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MW R+REA   YKR S +D S + D+E+ +A +QNG + E +NPSW LS PHVLVATL+S
Sbjct: 1   MWDRKREAFSTYKRLSLKDNSDSIDMEDNSAHLQNGKDFEASNPSWSLSLPHVLVATLTS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE IS DLGFNGNT+AEGLVVS CLGGA IGS LSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLEIISADLGFNGNTMAEGLVVSTCLGGALIGSLLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GA +SA T+ L GMLLGR  VGTGMGLGP VA+LYVTE+SP FVRGTYG+
Sbjct: 121 FQLSALPMILGAGMSAMTKTLAGMLLGRLFVGTGMGLGPPVASLYVTEISPAFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +LLIGIPVK+IA WWR CFWVS +PAA+L LAMVFCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALLIGIPVKDIADWWRTCFWVSTIPAALLALAMVFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           T EAE EFEKLLGGSHVKS+LAELSK DRGD+ D VK  ELL+GRHF+VVFIGSTLFALQ
Sbjct: 241 TEEAETEFEKLLGGSHVKSALAELSKFDRGDEPDDVKLSELLFGRHFQVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSS+VFKS G+ S LANV VG++NL GS+VAM+LMD+LGRK LL WSF  
Sbjct: 301 QLSGINAIFYFSSTVFKSVGVPSNLANVCVGLSNLAGSIVAMLLMDRLGRKLLLLWSFSG 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           MAV+MA+QV A S +   S +LYLSVGG LM
Sbjct: 361 MAVAMAVQVVAGSYHYSDSGALYLSVGGTLM 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220399|ref|NP_176898.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|75334518|sp|Q9FYG3.1|PLST2_ARATH RecName: Full=Probable plastidic glucose transporter 2 gi|9828628|gb|AAG00251.1|AC002130_16 F1N21.12 [Arabidopsis thaliana] gi|110742090|dbj|BAE98976.1| transport protein like protein [Arabidopsis thaliana] gi|332196504|gb|AEE34625.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/395 (71%), Positives = 332/395 (84%), Gaps = 4/395 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           SF  MA +MA+QV A+SSY+P  ++L LSVGG L+
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLV 395

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531285|ref|XP_003534208.1| PREDICTED: probable plastidic glucose transporter 2-like isoform 1 [Glycine max]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/383 (73%), Positives = 324/383 (84%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  D+EE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDMEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILAAAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           E+LLG S  K +++ELSK+DRGDD D VK  ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKVDRGDDTDTVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305

Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368
           FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF MA++M +Q
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGMAIAMILQ 365

Query: 369 VAASSSYIPGSASLYLSVGGMLM 391
              ++S +    + Y SVGGML+
Sbjct: 366 ATGATSLVSNVGAQYFSVGGMLL 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520521|ref|XP_003528910.1| PREDICTED: probable plastidic glucose transporter 2-like [Glycine max]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 283/383 (73%), Positives = 322/383 (84%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  DVEE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDVEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILATAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           E+LLG S  K +++ELSK DRGDD D VK  ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKADRGDDSDSVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305

Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368
           FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF MA++M +Q
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGMAIAMILQ 365

Query: 369 VAASSSYIPGSASLYLSVGGMLM 391
              ++S +    + Y SVGGM +
Sbjct: 366 ATGATSLVSNMGAQYFSVGGMFL 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570243|ref|NP_849855.2| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|332196503|gb|AEE34624.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/396 (71%), Positives = 331/396 (83%), Gaps = 5/396 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSMAVS-MAIQVAASSSYIPGSASLYLSVGGMLM 391
           SF  M  S MA+QV A+SSY+P  ++L LSVGG L+
Sbjct: 361 SFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLV 396

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	1.0	0.791	0.696	9.3e-146
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.938	0.741	0.692	3e-133
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.884	0.660	0.436	1.7e-75
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.810	0.580	0.424	1.9e-67
DICTYBASE|DDB_G0278261	630	DDB_G0278261 "solute carrier f	0.856	0.531	0.313	8.3e-40
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.831	0.701	0.307	7.8e-39
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.823	0.659	0.313	7.8e-39
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.795	0.638	0.315	3.4e-38
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.851	0.574	0.303	7e-38
TIGR_CMR|CPS_0245	478	CPS_0245 "sugar transporter fa	0.800	0.654	0.293	7.3e-38

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
 Identities = 276/396 (69%), Positives = 324/396 (81%)

Query:     1 MWGRQREASMMYKXXXXXXXXXXFDVEETTALVQNGT--EVENTNPSWKLSFPHVLVATL 58
             M G QRE S MYK           DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct:     1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query:    59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
             SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct:    61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query:   119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
             RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct:   121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query:   179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
             G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct:   181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query:   239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIGSTL 296
             G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH RVVFIGSTL
Sbjct:   241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query:   297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
             FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct:   301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query:   357 SFFSMAVS-MAIQVAASSSYIPGSASLYLSVGGMLM 391
             SF  M  S MA+QV A+SSY+P  ++L LSVGG L+
Sbjct:   361 SFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLV 396

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
 Identities = 254/367 (69%), Positives = 297/367 (80%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN 84
             D  ET   +  GT  +  NPSWK S PHVLVA+L+S LFGYHLGVVNE LESIS+DLGF+
Sbjct:    30 DKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFS 89

Query:    85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144
             GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRAFQL ALPMI+GAS+SA+T +L+GM
Sbjct:    90 GNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGM 149

Query:   145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204
             LLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+  QIATC+GL+GSL  GIP K+  
Sbjct:   150 LLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNL 209

Query:   205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             GWWRICFW+S VPAA+L + M  C ESP WL+K+GR AEAEA FEKLLGGS+VK+++AEL
Sbjct:   210 GWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAEL 269

Query:   265 SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG 324
              K DRGDD D  K  ELL+GR FRVVFIGSTLFALQQLSGINA+FYFSS+VFK AG+ S 
Sbjct:   270 VKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSA 329

Query:   325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL 384
              AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  MAVS+ +Q  A +S      +L+L
Sbjct:   330 SANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYTSLPSPFGTLFL 389

Query:   385 SVGGMLM 391
             SVGGML+
Sbjct:   390 SVGGMLL 396

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 152/348 (43%), Positives = 225/348 (64%)

Query:    46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
             W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct:    76 WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query:   106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
              ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct:   136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query:   166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
             ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct:   196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query:   226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
              F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct:   256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query:   285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
              H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct:   316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query:   344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
             L+DK GRK LL  S+  MAVSM + V A    +    S  LS+ G LM
Sbjct:   376 LIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLM 423

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 135/318 (42%), Positives = 204/318 (64%)

Query:    51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
             P V VA L + LFGYHLGVVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G 
Sbjct:   107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166

Query:   111 IADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             +AD  GR R FQL A+P+ IGA + AT +++  M++GR + G G+G+   +  LY++E+S
Sbjct:   167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q+  C+G++ +L+ G+P+     WWR  F V+++P+ +L + M F  E
Sbjct:   227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286

Query:   231 SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290
             SP WL ++G+ +EAE   + L G   V   + +LS   +G       + +L   R+++VV
Sbjct:   287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVV 346

Query:   291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
              +G+ LF  QQL+GINA+ Y+S+SVF+SAG+ S +A +  VG +N+ G+ VA  LMDK+G
Sbjct:   347 SVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMG 406

Query:   350 RKALLQWSFFSMAVSMAI 367
             RK+LL  SF  MA+SM +
Sbjct:   407 RKSLLLTSFGGMALSMLL 424

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 426 (155.0 bits), Expect = 8.3e-40, P = 8.3e-40
 Identities = 112/357 (31%), Positives = 181/357 (50%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFP---HVLVATLSSFLFGYHLGVVNEPLESISLDL 81
             ++  TT   +N  E  N N + KLSF    +V  + LS+  FGY+ GV++  +  I    
Sbjct:   152 NISTTTITTRNNNENLNNNNNSKLSFFLIFNVSFSVLSTLQFGYNTGVISPTILDIQTIF 211

Query:    82 GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL 141
             G N N   + ++VS  L GA +GS LSG+  D  GR++      L  ++G  + +  +N 
Sbjct:   212 GLNVNE--KSMLVSSVLFGAMLGSFLSGFFVDIFGRKKTLLGNNLFYLLGPLLCSVGKNY 269

Query:   142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201
               +L+GR + G G+G+  +V  LY+TE+SPP  RG+ G   Q    LG+M S L    + 
Sbjct:   270 ATLLIGRLITGVGVGIASSVVPLYITEISPPSFRGSLGLLRQSTVTLGIMLSSLFAYGLL 329

Query:   202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261
               +  WR  F ++ +P+    +   +  ESP WL  K R  EA+   +K+    HV   L
Sbjct:   330 VYSNGWRYTFAIASIPSLFQFILGYWFVESPRWLVSKNREDEAKQIMKKI--EPHVSEDL 387

Query:   262 AEL-------SKLD-RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS 313
              +L       S L+ +G+D  +  F+   Y ++ ++  IG  L  LQQ  GIN + Y+S 
Sbjct:   388 IDLQITRIRSSVLEQKGNDNWLQLFQ---Y-QYLKIYIIGFGLNMLQQFVGINCVIYYSG 443

Query:   314 SVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
              + + AG +   A      VGI  L+  ++++ L+D+ GRK LL      M + +A+
Sbjct:   444 IILEDAGFAKNAAVLIGALVGIPQLVMLLISVWLIDRFGRKPLLLVGCIGMIIGLAV 500

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 105/341 (30%), Positives = 179/341 (52%)

Query:    35 NGTEVENTNPSWKLSFPHVL--VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGL 92
             N T+ +   P+ K  F  V+  +A  +  LFGY  GV++  +  IS +  F+ +    G 
Sbjct:     2 NSTD-QYVLPAKKSHFYWVIAFIAAFAGILFGYDTGVISGAILFISQE--FHLSPQMNGF 58

Query:    93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152
             VVS  L GAF+G+  SG +AD +GR+R   + AL  I+G +IS+ T ++  +++GR +VG
Sbjct:    59 VVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVG 118

Query:   153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212
               +G+    A LY++E+SPP  RG   +  Q+A  +G+  S ++         W R  F 
Sbjct:   119 IAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFA 177

Query:   213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSKLDRGD 271
               ++PAA+L L M+    SP W++ +G   +A     KL G G H +  L  +    +  
Sbjct:   178 AGVIPAALLLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRASLQQQ 237

Query:   272 DGDIVKFEELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG----LA 326
              GD       L+ +  R  +FI   L   QQ++GIN + Y++ ++ K  G  +     LA
Sbjct:   238 KGDW----RTLFSKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQASQTAILA 293

Query:   327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
              + +G   ++ +++++ L+D LGR+ LL     +M VS+ +
Sbjct:   294 TMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAMTVSLLV 334

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 106/338 (31%), Positives = 182/338 (53%)

Query:    53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
             VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct:    53 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109

Query:   112 ADGVGRRRAFQLCALPMIIG-ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             A+ VGR+ +  + A+P IIG  SIS   ++   + +GR + G G+G+      +Y+ E++
Sbjct:   110 AEYVGRKGSLMIAAIPNIIGWLSISFA-KDTSFLYMGRLLEGFGVGIISYTVPVYIAEIA 168

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q++  +G+M + L+G+ V      WRI   + ++P  +L   + F  E
Sbjct:   169 PQTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPE 223

Query:   231 SPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFR 288
             SP WL K G T + E   + L G  + +   + E+ + +        V+F +L   R++ 
Sbjct:   224 SPRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYF 283

Query:   289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDK 347
              + +G  L ALQQL GIN + ++SS++F+SAG+ SS +A   VG+  ++ + +A  L+DK
Sbjct:   284 PLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDK 343

Query:   348 LGRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSASLY 383
              GR+ LL  S   M +S+ I   A     ++   +++Y
Sbjct:   344 AGRRLLLMISSIGMTISLVIVAVAFYLKEFVSPDSNMY 381

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 102/323 (31%), Positives = 174/323 (53%)

Query:    53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
             VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct:    52 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108

Query:   112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
             A+ +GR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct:   109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168

Query:   172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
               +RG  G+  Q++  +G+M + L+G+ V      WRI   + I+P  +L   + F  ES
Sbjct:   169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223

Query:   232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
             P WL K G T E E   + L G  + +   + E+ + +      + V+F +L   R++  
Sbjct:   224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283

Query:   290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
             + +G  L  LQQL GIN + ++SS++F+SAG++S  A  F VG   ++ + ++  L+DK 
Sbjct:   284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343

Query:   349 GRKALLQWSFFSMAVSMAIQVAA 371
             GR+ LL  S   M +S+ I  AA
Sbjct:   344 GRRLLLTISSVGMTISLVIVAAA 366

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 109/359 (30%), Positives = 178/359 (49%)

Query:    45 SWKLSFPHVL----VATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLG 99
             +WK   P+VL     A +   LFGY  GV++  L  I  D    + NT  + ++VSM + 
Sbjct:    22 TWKN--PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVA 79

Query:   100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
             GA +G+ + GW  D +GRR A  +     ++GA I A   N   +++GR  VG G+G+  
Sbjct:    80 GAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMAS 139

Query:   160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
               A LY++E SP  +RG   +        G   S LI +   ++ G WR    ++ +PA 
Sbjct:   140 MTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPAL 199

Query:   220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSK------LDRGDDG 273
             +  + M    ESP WLY+KGR  EA+A   ++     V+  +  L        L+ G   
Sbjct:   200 LQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSE 259

Query:   274 DI--VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-----LA 326
              I  +K  +    R   +  +G  +F  QQ  GIN + Y+S ++ + AG +S      L+
Sbjct:   260 KINMIKLCKAKTVRRGLIAGVGLQVF--QQFVGINTVMYYSPTIVQLAGFASNRTALLLS 317

Query:   327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA---SSSYIPGSASL 382
              V  G+ N  GS++++  +D++GRK LL  S F + +S+ I       ++++ P  +SL
Sbjct:   318 LVTAGL-NAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVFYEAATHAPAISSL 375

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

TIGR_CMR|CPS_0245 CPS_0245 "sugar transporter family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 385 (140.6 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 99/337 (29%), Positives = 169/337 (50%)

Query:    49 SFPHVL----VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIG 104
             SF +VL    VA +  FLFG+  GV+N  + +  L   FN + +A G  V+  L G  +G
Sbjct:    22 SFLYVLFISSVAAIGGFLFGFDSGVINGTVTA--LGNAFNASDVASGFNVASVLLGCAVG 79

Query:   105 STLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164
             + ++G I+D  GR+    + A+   I A  S  + +    +  R + G G+G    +A  
Sbjct:    80 ALMAGPISDRFGRKPIMIITAIIFAISAFGSGISSSSAEFIFYRLIGGLGIGAASVLAPA 139

Query:   165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-----------WRICFWV 213
             Y+ EV+P  +RG      Q+A  LGL  + L    +  ++G            WR  FWV
Sbjct:   140 YIAEVAPAALRGRLATLQQLAIVLGLFAAFLSNFLIASVSGGAEAMLMLDIAAWRWMFWV 199

Query:   214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG 273
              ++PA +  + ++F  ESP +L  +G+  EA   F+++  G      + E+ K   GD  
Sbjct:   200 ELLPAVLFLVGVIFIPESPRYLVAQGKIEEARTIFKRIATGVE-NEQIEEVKKSLHGDKK 258

Query:   274 DIVKFEELLYGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL--SSGL-ANV 328
               ++ +  + G+     +++IG  L   QQ  GIN +FY+ + ++++AG   S  L  N+
Sbjct:   259 PSIR-DLFIDGKKKIHPIIWIGIGLSVFQQFVGINVVFYYGAELWQAAGFDESQSLFINL 317

Query:   329 FVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 365
               G  N++ + +A+ L+DK+GRK LL      M +S+
Sbjct:   318 IAGTTNIISTFIAIALVDKIGRKPLLLVGSVGMFISL 354

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYG3	PLST2_ARATH	No assigned EC number	0.7164	1.0	0.7931	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016716001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (488 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-56
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-46
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-41
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-15
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-15
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-11
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-08
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	2e-08
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-05
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	7e-05
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	5e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	7e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.001
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.002
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.002

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  190 bits (485), Expect = 3e-56
 Identities = 108/331 (32%), Positives = 174/331 (52%), Gaps = 16/331 (4%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE---------GLVVSMCLGGAFI 103
            LVA L  FLFGY  GV+   L  I     F   T            GL+VS+   G  I
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 104 GSTLSGWIADGVGRRRAFQLCALPMIIGA--SISATTRNLIGMLLGRFVVGTGMGLGPTV 161
           GS  +G + D  GR+++  +  +  +IGA     A  ++   +++GR +VG G+G    +
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--WRICFWVSIVPAA 219
             +Y++E++P  +RG  G+  Q+    G++ + +IG+ + + +    WRI   +  VPA 
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE-LSKLDRGDDGDIVKF 278
           +L + ++F  ESP WL  KG+  EA A   KL G S V   + E    L+R  + +   +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 279 EELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLL 336
            EL  G+  R  + +G  L   QQL+GINAIFY+S ++F++ GLS S L  + VG+ N +
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301

Query: 337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
            + +A+ L+D+ GR+ LL      MA+   +
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLV 332

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  165 bits (420), Expect = 1e-46
 Identities = 102/336 (30%), Positives = 167/336 (49%), Gaps = 23/336 (6%)

Query: 54  LVATLSSFLFGYHLGVVNEPLESISLDLGFNGN------TLAEGLVVSMCLGGAFIGSTL 107
           L+A +   +FGY  GV+   L   + +  F         +   GLVVS+ L G FIG+  
Sbjct: 31  LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90

Query: 108 SGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAAL 164
           +GW++D  GR+++  + AL  +IGA +       +    +++GR ++G G+G+   +  +
Sbjct: 91  AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---WRICFWVSIVPAAIL 221
           Y++E++P  +RG   +  Q+A   G++ +   G            WRI   + ++PA +L
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV-SLNNTLGWRIPLGLQLIPAGLL 209

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV-KSSLAELS----KLDRGDDGDIV 276
            L + F  ESP WL  KGR  EA     +L G S   K  L EL     K          
Sbjct: 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269

Query: 277 KFEELLY--GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG 331
            +  L     R  R +F+G  L   QQ +GINAI Y+S ++F++AG+S+    L ++ VG
Sbjct: 270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329

Query: 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
             N   + VA+ L+D+ GR+ LL      MA+ + +
Sbjct: 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  150 bits (382), Expect = 3e-41
 Identities = 103/363 (28%), Positives = 166/363 (45%), Gaps = 42/363 (11%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESI------SLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
            LVATL   LFGY   V++  +ES+        +L  +      G  V+  L G  IG  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 107 LSGWIADGVGRRRAFQLCALPMIIGA-----------SISATTRNLIGML-LGRFVVGTG 154
           L G+ ++  GRR + ++ A+   I A           SI       +    + R + G G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-----GIPVKEIAGW--- 206
           +GL   ++ +Y+ E++P  +RG   +F Q A    + G L++      I     A W   
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI---IFGQLVVYFVNYFIARSGDASWLNT 190

Query: 207 --WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             WR  F    +PA +  + + F  E+P +L  +G+  +AE    K++G +    +L E+
Sbjct: 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI 250

Query: 265 -SKLDRGDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
              LD G         +LL +G    V+ IG  L   QQ  GIN + Y++  +FK+ G S
Sbjct: 251 KHSLDHG----RKTGGKLLMFG--VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304

Query: 323 SGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGS 379
           + +A    + VG+ NL  +V+A++ +DK GRK L       MA+ M     A  +  PG 
Sbjct: 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 364

Query: 380 ASL 382
            +L
Sbjct: 365 VAL 367

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           +L+  L  FL G   G+++  L  ++ DLG + +    GL+VS    G  +GS L+G+++
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   L  L   +G+ + A   +L  +L+GRF++G G G     AA  + E  PP
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
             RG           LG +   L+G  + E  G WR  F +  +   +L L ++F 
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFL 173

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 75.5 bits (186), Expect = 6e-15
 Identities = 76/362 (20%), Positives = 137/362 (37%), Gaps = 21/362 (5%)

Query: 37  TEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM 96
                  P  +  +  ++++ L   + GY L  +     +IS + G +   L  G + S 
Sbjct: 3   QNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSA 60

Query: 97  CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156
            L G   G+   G +AD +GRRR      L   +   + A   N+  +L+ RF+ G G+G
Sbjct: 61  GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120

Query: 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV-SI 215
                    V+E +P   RGT    +     +G      +   +  + G WR  F+V  I
Sbjct: 121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGI 179

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
            P  +L L M F  ES  +L  K    E        +       + + L +         
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKR--PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKR 237

Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS----VFKSAGLSSGLANVFVG 331
             F+ L  G+  R+  +   L+ +  +       YF ++    +    G S  LA     
Sbjct: 238 SVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTNWLPKLMVELGFSLSLAATGGA 292

Query: 332 IAN---LLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
           + N   ++GS++   L D+LG +         +  ++   +  S+ + P    L  ++ G
Sbjct: 293 LFNFGGVIGSIIFGWLADRLGPRVTA---LLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349

Query: 389 ML 390
             
Sbjct: 350 FF 351

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 13/269 (4%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  +GS + G+++D  GR++   L  L   +   ++A + N    L+ R +VG G+G   
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
             A +  TE  P   R   G  IQ+   LGL+   L+   + +    WR       +P  
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTF 254

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKL--LGGSHVKSSLAELSKL-DRGDDGDIV 276
           +  L   F  ESP WL  +GR  EA    +++  + G  + + +  LS   D        
Sbjct: 255 LFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQY 314

Query: 277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANL 335
            F +L    + R   +      L  L    A  Y+   +     G +  L     G+  L
Sbjct: 315 SFLDLFRTPNLRKTTL-----CLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVEL 369

Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMAVS 364
              ++ ++L+D+LGR+  +  S     V+
Sbjct: 370 PAKLITLLLIDRLGRRYTMAASLLLAGVA 398

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 67/342 (19%), Positives = 126/342 (36%), Gaps = 38/342 (11%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           + +A   + L    LG        ++ DLG +   +  GL+++    G  +   L+G ++
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   +  L   +G  +     +L  +L+ R + G G G     AA  + +  PP
Sbjct: 57  DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP 232
             RG     +     LG     L+G  +  + G WR  F +  + A +  +         
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAAL----- 170

Query: 233 HWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292
             L +    ++     E+                        +V   +LL       + +
Sbjct: 171 -LLPRPPPESKRPKPAEEAPAP--------------------LVPAWKLLLRDPVLWLLL 209

Query: 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV---LMDKLG 349
              LF         A+  +     +  GLS+ LA + +G+A LLG++  ++   L D+LG
Sbjct: 210 ALLLFGF----AFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG 265

Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391
           R+  L  +   + ++       S +       + L + G   
Sbjct: 266 RRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGA 307

Length = 346

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 61/283 (21%), Positives = 108/283 (38%), Gaps = 57/283 (20%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGM------LLGRFVVGTG 154
           +G+ + G   D +GR++   +  L M IG  +     +   IG+      LL R + G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------W-W 207
           +G     AALY+ E +PP  RG YG+F Q+   +GL+ + L  + +  + G      W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL 267
           RI F VS V   I         E+P +   + +  +      + L               
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLT-------------- 215

Query: 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN 327
                            +H +   +G  L      +      Y  + + ++ GLS   AN
Sbjct: 216 -----------------KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS---AN 255

Query: 328 VFVGIANLLGSVVAMV-------LMDKLGRKALLQWSFFSMAV 363
             + +  +L  ++  +       L D++GR+ +L       A+
Sbjct: 256 SALLV-LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAAL 297

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 1/156 (0%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
            G+ + G   D  GRR       +    G          I M + R V+G GMG     +
Sbjct: 62  FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAIL 221
           A YV E  P  +R      +     +G + +  +   V  + G  WR  F++SI+P    
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV 257
                   E+  W  K    A      + L GG H 
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR 217

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 67/283 (23%), Positives = 113/283 (39%), Gaps = 46/283 (16%)

Query: 98  LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL 157
           L GA +G    G +AD +GR+R   +      + +  +A   +   +L+ R +  TG+GL
Sbjct: 64  LPGALLG----GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL--TGVGL 117

Query: 158 G---PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214
           G   P + AL  +E   P +RGT  + +      G   + +IG+     A W R  F+V 
Sbjct: 118 GGALPNLIAL-TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW-RHIFYVG 175

Query: 215 -IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG 273
            + P  ++ L M +  ES  +    G   +       L G     ++L            
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLL----------- 224

Query: 274 DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFV 330
                          + +   TL  L  L  +N +     S+    GLS   +GL  +  
Sbjct: 225 -------------LWISYFF-TLIVLYFL--LNWL----PSLLVGQGLSRSQAGLVQIAF 264

Query: 331 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373
            I   LGS++   LMD+L  + ++   +  +  S+A   AA S
Sbjct: 265 NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS 307

Length = 406

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  I S LSG + D  GR+    +     ++  ++ A + N+  +++ RF+ G G     
Sbjct: 10  GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
              A  + ++ PP  RG     +     LG +    +G  + +  G WR  F    +  A
Sbjct: 70  VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAI-LA 127

Query: 220 ILCLAMVFC 228
           +    ++  
Sbjct: 128 LAAFILLAF 136

Length = 141

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 77  ISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133
           I  DLG     G  LA    +    GGA  G      +AD  GR+       +   +G  
Sbjct: 44  IKADLGLTDMEGAFLATAAFIGRPFGGALFGL-----LADKFGRKPLMMWSIVAYSVGTG 98

Query: 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS 193
           +S     +I + L RF+VG GM      A+ Y  E  P  ++    AF+     +G + +
Sbjct: 99  LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158

Query: 194 LLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
                   E  G WR  F+V ++P  ++        ES  W   K
Sbjct: 159 AYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARAPESKEWEEAK 202

Length = 426

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 2/179 (1%)

Query: 50  FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG 109
              +L+  L+ FL  +    +   L     ++       A GL++S+   G  +G+ L G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA-GLLLSLFGLGGILGALLGG 232

Query: 110 WIADGVGRRRAFQLCALP-MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168
            ++D +GRRR   L  L    +G  + A   +L  +L+   ++G G+G          +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292

Query: 169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
           ++PP  RGT          LG     L+   + +  G+  +   ++ +      L ++ 
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150
           G +++    G  +G+ L   +   + RRR         I+   +SA   +   +LL R +
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210
            G   G+  ++AA     + PP  RG   A +     L  +  + +G  + ++ G WR  
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRAT 169

Query: 211 FWVSIVPAAILCLAMVF 227
           F   I   A+L L +++
Sbjct: 170 FLA-IAVLALLALLLLW 185

Length = 394

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 21/164 (12%)

Query: 85  GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLI 142
           GN     +++ +    A +G+ L  W+A   G++R F L  L   IG  +       +L 
Sbjct: 254 GNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW 313

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEV-----------SPPFVRGTYGAFIQIATCLGLM 191
             L+   + G G+GL   +    + +V                   Y    ++   LG  
Sbjct: 314 LFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGA 373

Query: 192 GSLLI--------GIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
              L+            +  A    I    +++PA +  LA++ 
Sbjct: 374 IVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLI 417

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 20/212 (9%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-NGNTLAEGLVVSMCLGGAFIG 104
           W L F    V  L+    G  + VV   L S   DL   +      GL+V +   G  +G
Sbjct: 166 WALFF----VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL---GMMVG 218

Query: 105 STLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164
           +   G +AD +GR++   +C       A  S+  +     L  R + G G+G    +   
Sbjct: 219 AFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS 278

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW------------WRICFW 212
           Y  E      RG + +++ +   +G + +  +   +    GW            WR+   
Sbjct: 279 YFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338

Query: 213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEA 244
           V   P      A+ F  ESP +  + G+  EA
Sbjct: 339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
           I   L+GW+A   G RR F +      +G+ +     NL  M++ R + G G G    ++
Sbjct: 52  ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLS 111

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222
              +  + PP  RG   A   +   +       +G  + E    WR  F +++    I+ 
Sbjct: 112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVV 170

Query: 223 LAMVF 227
           +   F
Sbjct: 171 VVAFF 175

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
             VL   L+  LFG+    +   L      LG +   L  GL++ +      IG  L G 
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS--ALLAGLLLGLAGLLGAIGRLLLGR 259

Query: 111 IADGVGRRRAFQLCALPMIIGA---SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT 167
           ++D +GRRR   L  L +I+ A   ++ + T + + +L+   ++G G GL        V+
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319

Query: 168 EVSPPFVRGTYGAFIQIATCLG 189
           +++P   RGT       A  LG
Sbjct: 320 DLAPKEERGTASGLYNTAGSLG 341

Length = 346

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 17/157 (10%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTL-SGWIADGVGRRRAFQLCALPMIIGASISATTR-- 139
           F    L++ L+V++ +G      T  + ++ D  GRR    L A  M I   +       
Sbjct: 280 FETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLG 339

Query: 140 --------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM 191
                    +  + +  F+    +G GP V  + V+E+ P  VR      + IAT    +
Sbjct: 340 VAKSKGAGIVAIVFILLFIAFFALGWGP-VPWVIVSELFPLGVRP---KAMAIATAANWL 395

Query: 192 GSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
            + LIG     I G   I  +V +V A +L L ++F 
Sbjct: 396 ANFLIGFLFPIITG--AIGGYVFLVFAGLLVLFILFV 430

Length = 449

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTR 139
           F+       L+     GG FI S  +G +   +G +    L  L   +GA++   +A+++
Sbjct: 43  FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102

Query: 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           +    L+  F++ +G+GL  T A  YVT +  P
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKP 135

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	99.98
PRK10091	382	MFS transport protein AraJ; Provisional	99.98
PRK09952	438	shikimate transporter; Provisional	99.98
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
PRK03699	394	putative transporter; Provisional	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
PRK10504	471	putative transporter; Provisional	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
TIGR00895	398	2A0115 benzoate transport.	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
PRK11043	401	putative transporter; Provisional	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
KOG2532	466	consensus Permease of the major facilitator superf	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
PRK12382	392	putative transporter; Provisional	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
PRK10489	417	enterobactin exporter EntS; Provisional	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.94
PRK10054	395	putative transporter; Provisional	99.94
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.94
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.94
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.93
PRK15011	393	sugar efflux transporter B; Provisional	99.93
TIGR00901	356	2A0125 AmpG-related permease.	99.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.93
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.92
PRK11902	402	ampG muropeptide transporter; Reviewed	99.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.92
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
PRK09528	420	lacY galactoside permease; Reviewed	99.91
KOG2615	451	consensus Permease of the major facilitator superf	99.9
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.9
PTZ00207	591	hypothetical protein; Provisional	99.89
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.89
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.85
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.84
KOG2563	480	consensus Permease of the major facilitator superf	99.82
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.8
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.79
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.78
PF13347	428	MFS_2: MFS/sugar transport protein	99.78
PRK10642	490	proline/glycine betaine transporter; Provisional	99.78
PRK09669	444	putative symporter YagG; Provisional	99.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.75
PRK10429	473	melibiose:sodium symporter; Provisional	99.73
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.71
PRK09848	448	glucuronide transporter; Provisional	99.7
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.69
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.67
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.67
PRK11462	460	putative transporter; Provisional	99.66
COG2211	467	MelB Na+/melibiose symporter and related transport	99.65
PRK15011	393	sugar efflux transporter B; Provisional	99.64
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.63
PRK05122	399	major facilitator superfamily transporter; Provisi	99.63
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.63
KOG0569	485	consensus Permease of the major facilitator superf	99.63
KOG3626	735	consensus Organic anion transporter [Secondary met	99.63
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.62
PRK09528	420	lacY galactoside permease; Reviewed	99.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.6
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.59
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.59
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.58
PRK12382	392	putative transporter; Provisional	99.58
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.57
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.56
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.55
PRK09874	408	drug efflux system protein MdtG; Provisional	99.55
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.55
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.55
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.55
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.54
PRK09705	393	cynX putative cyanate transporter; Provisional	99.52
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.52
PRK03699	394	putative transporter; Provisional	99.52
PRK03633	381	putative MFS family transporter protein; Provision	99.51
TIGR00893	399	2A0114 d-galactonate transporter.	99.51
PRK09952	438	shikimate transporter; Provisional	99.51
TIGR00891	405	2A0112 putative sialic acid transporter.	99.5
TIGR00895	398	2A0115 benzoate transport.	99.49
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.47
PRK10489	417	enterobactin exporter EntS; Provisional	99.47
PRK03893	496	putative sialic acid transporter; Provisional	99.47
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.46
PRK03545	390	putative arabinose transporter; Provisional	99.46
TIGR00898	505	2A0119 cation transport protein.	99.45
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.39
PRK11663	434	regulatory protein UhpC; Provisional	99.38
PRK10504	471	putative transporter; Provisional	99.38
TIGR00900	365	2A0121 H+ Antiporter protein.	99.38
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.37
PRK15075	434	citrate-proton symporter; Provisional	99.36
PRK11010	491	ampG muropeptide transporter; Validated	99.35
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.35
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.34
PRK12307	426	putative sialic acid transporter; Provisional	99.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.33
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.32
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.32
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.29
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.28
PRK10054	395	putative transporter; Provisional	99.28
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.27
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.27
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.27
PLN00028	476	nitrate transmembrane transporter; Provisional	99.26
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.25
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.25
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.25
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.24
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.23
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.23
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.22
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.21
PRK10091	382	MFS transport protein AraJ; Provisional	99.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.2
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.17
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.16
TIGR00901	356	2A0125 AmpG-related permease.	99.14
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.14
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.13
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.13
PRK11902	402	ampG muropeptide transporter; Reviewed	99.12
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.11
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.11
PRK09848	448	glucuronide transporter; Provisional	99.11
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.11
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.1
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.08
KOG0254	513	consensus Predicted transporter (major facilitator	99.07
COG0477	338	ProP Permeases of the major facilitator superfamil	99.07
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.06
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.06
PF13347	428	MFS_2: MFS/sugar transport protein	99.05
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.05
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.04
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.03
PRK10429	473	melibiose:sodium symporter; Provisional	99.03
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.01
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.0
PRK10133	438	L-fucose transporter; Provisional	98.99
PRK09669	444	putative symporter YagG; Provisional	98.99
PRK11043	401	putative transporter; Provisional	98.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.97
KOG0637	498	consensus Sucrose transporter and related proteins	98.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.88
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.88
KOG2532	466	consensus Permease of the major facilitator superf	98.85
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.85
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.84
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.79
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.78
COG2211	467	MelB Na+/melibiose symporter and related transport	98.77
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.75
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.74
KOG3762	618	consensus Predicted transporter [General function	98.74
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.73
PRK11462	460	putative transporter; Provisional	98.69
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.64
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.63
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.62
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.6
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.56
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.56
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.55
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.37
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.35
PF12832	77	MFS_1_like: MFS_1 like family	98.35
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.31
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.29
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.24
PTZ00207	591	hypothetical protein; Provisional	98.21
COG3202	509	ATP/ADP translocase [Energy production and convers	98.19
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.17
KOG2533	495	consensus Permease of the major facilitator superf	98.11
KOG3810	433	consensus Micronutrient transporters (folate trans	98.1
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.96
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.93
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.89
KOG2615	451	consensus Permease of the major facilitator superf	97.81
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.68
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.68
PF12832	77	MFS_1_like: MFS_1 like family	97.45
PRK03612	521	spermidine synthase; Provisional	97.41
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.36
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.24
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.11
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.11
KOG3097	390	consensus Predicted membrane protein [Function unk	97.04
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.02
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.84
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.8
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.62
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.58
KOG3762	618	consensus Predicted transporter [General function	96.29
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.23
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.21
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.07
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.04
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.02
KOG2563	480	consensus Permease of the major facilitator superf	95.92
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.5
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.35
TIGR00805	633	oat sodium-independent organic anion transporter.	95.26
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.14
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.81
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.76
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.61
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.58
KOG0637	498	consensus Sucrose transporter and related proteins	91.74
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	91.21
KOG3880	409	consensus Predicted small molecule transporter inv	88.32
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	88.26
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.16
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	87.09
KOG2881	294	consensus Predicted membrane protein [Function unk	82.02
COG0477	338	ProP Permeases of the major facilitator superfamil	80.76
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	80.7

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-35  Score=256.81  Aligned_cols=291  Identities=22%  Similarity=0.257  Sum_probs=255.5

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +..+..+..+.++.|..+....+...++|++++|+|++..+.  |+..|+|.++.+++.++...+.||+.||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            334556778888999999999999999999999999998888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      ++.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|.++|.++.+..| 
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hHHHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccccc
Q 016350          207 WRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (391)
Q Consensus       207 w~~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      ||+.|++.+..+++..+.. ..+|  |+    +.+                            ++...+..+..+++++|
T Consensus       166 WR~~F~~ia~l~ll~~~~~~~~lP--~~----~~~----------------------------~~~~~~~~~~~~~l~~p  211 (394)
T COG2814         166 WRATFLAIAVLALLALLLLWKLLP--PS----EIS----------------------------GSLPGPLRTLLRLLRRP  211 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC--Cc----cCC----------------------------CCCCcchhHHHHHhcCc
Confidence            9999999888888776654 5567  11    000                            00111122244577889


Q ss_pred             chhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 016350          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  365 (391)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  365 (391)
                      ..+..++..++.+...+..++++..++++..+.+....++.+..+++++++|++++|++.|| +.|+.+.....+.++..
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~  290 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL  290 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888888899999999999999999999999 88888888888888887


Q ss_pred             HHHHHHhccC
Q 016350          366 AIQVAASSSY  375 (391)
Q Consensus       366 ~~~~~~~~~~  375 (391)
                      +.+.+.....
T Consensus       291 l~l~~~~~~~  300 (394)
T COG2814         291 LALTFTGASP  300 (394)
T ss_pred             HHHHHhcchH
Confidence            7777666554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=4.6e-35  Score=277.80  Aligned_cols=206  Identities=20%  Similarity=0.269  Sum_probs=185.2

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +..|..++++.++.+..+++...++..+|.+.++++++..+.  +++.+++.++.+++++++|+++||+|||++++++++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            556667777888888889999999999999999999987766  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc---
Q 016350          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI---  203 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---  203 (391)
                      +.++++++++++++++.++++|+++|++.|+..+....++.|++|+++|++.+++...++.+|.++++.++..+...   
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998776544322   


Q ss_pred             ----------cchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCC
Q 016350          204 ----------AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS  255 (391)
Q Consensus       204 ----------~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  255 (391)
                                .+ ||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+
T Consensus       321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n  381 (742)
T TIGR01299       321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN  381 (742)
T ss_pred             hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence                      24 9999999888888888788889999999999999999999888877654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=5.6e-34  Score=265.57  Aligned_cols=320  Identities=13%  Similarity=0.034  Sum_probs=247.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      +|..+..++++.++...+.++++..+|.+.+|+|.+.++.  +|+.+.|.++++++.+++|+++||+|||++++.+.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4667888899999999999999999999999999988777  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcC-CccccchHHHHHHHHHHHHHHHHHHhccccccccchh
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (391)
                      +++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++++++......+|..+||.+++.+.++.+ |
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-w  160 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-W  160 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-h
Confidence            999999999999999999999999999999888888787776 67899999999999999999999999999999988 9


Q ss_pred             HHHHHHHHHHHHHHHHH-hhccccchhHHHHcCCHHHHHH----------HHHHHhCCCCch-hH----------HHHhh
Q 016350          208 RICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEA----------EFEKLLGGSHVK-SS----------LAELS  265 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-~~----------~~~~~  265 (391)
                      |+.|++.....++.++. .+++||+++...++.+......          ............ ..          .....
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            99999987766665444 4556776431100011000000          000000000000 00          00000


Q ss_pred             hcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016350          266 KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLM  345 (391)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  345 (391)
                      ..+.+ ...+....+++++|.+....+..++..........+.+.|++..++.+..+++....+..++..++.++.|++.
T Consensus       241 ~~e~~-~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~  319 (495)
T PRK14995        241 RTQLA-ASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV  319 (495)
T ss_pred             HHHhc-CCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111 12233335688888888777777776666666666788888888888888899999999999999999999999


Q ss_pred             hhhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          346 DKLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      ||+|+|+.+..+..+.+++..++....
T Consensus       320 ~r~g~~~~~~~g~~~~~~~~~~l~~~~  346 (495)
T PRK14995        320 SRLGLRLVATGGMALSALSFYGLAMTD  346 (495)
T ss_pred             HHcCchHHHHHHHHHHHHHHHHHHHhc
Confidence            999999988888888887777665543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.6e-35  Score=250.74  Aligned_cols=328  Identities=15%  Similarity=0.100  Sum_probs=261.5

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  125 (391)
                      .+.+++.++.+.+++...++.+...+...|.+.+|.++|.+|.  |++.+.+.++|.++-++.|.++||.++|..+..++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL  101 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence            3455677888899999999999999999999999999988877  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhc--cccccc
Q 016350          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--IPVKEI  203 (391)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~  203 (391)
                      ++.++.+++.+++++...+.+..+++|...|..+|.+...++.|+|+++||+..++++++.++|..+.|++.  +.+..+
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999998888888  888877


Q ss_pred             cchhHHHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccC-CCCccccchhc
Q 016350          204 AGWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG-DDGDIVKFEEL  281 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  281 (391)
                      .+ ||..|++.++++++..+.. +..+++|+..-... .+|.+.       +..   +.. .++.+++ ....+.-.+-+
T Consensus       182 ~~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-ie~~~~-------d~~---e~~-~~~~~~~~ls~~~i~~~YV  248 (448)
T COG2271         182 GG-WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-IEEYRG-------DPL---EIY-EEEKENEGLTAWQIFVKYV  248 (448)
T ss_pred             cc-hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-HHHhhc-------Cch---hhh-hhhccCCCccHHHHHHHHH
Confidence            77 9999999988888876655 55677764221110 111000       000   000 0000111 11122345567


Q ss_pred             ccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh--CchHHHHH-HH
Q 016350          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQW-SF  358 (391)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~-~~  358 (391)
                      ++||..|.+.+..++....-+....|.|.|+.+..+.+..+++...+.+-.++++|.+++|+++||+  |||....+ ..
T Consensus       249 L~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         249 LKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            8999999999999999999999999999999999999888899999999999999999999999996  56666554 44


Q ss_pred             HHHHHHHHHHHHHhccCCCCchHhHHhhhhc
Q 016350          359 FSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (391)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  389 (391)
                      +...++...+...++. +......++.+.|+
T Consensus       329 ~~i~~~~~~~w~~~~~-~~~l~~~~l~~iGf  358 (448)
T COG2271         329 LLITASLVLYWLAPNG-SYLLDAILLFIIGF  358 (448)
T ss_pred             HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHH
Confidence            4444555545444443 34444555555554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.8e-32  Score=240.34  Aligned_cols=322  Identities=34%  Similarity=0.582  Sum_probs=261.4

Q ss_pred             hHHHHHHHHHHHHhhhhhhcccchHHHhHh--------hhcc--Ccch--hHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 016350           50 FPHVLVATLSSFLFGYHLGVVNEPLESISL--------DLGF--NGNT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGR  117 (391)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~--~~~~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr  117 (391)
                      ......+.++.+..+++...+++..+.+.+        .+|.  ++++  ..++.+++++.+|.++|+++.++++||+||
T Consensus        10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR   89 (485)
T KOG0569|consen   10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR   89 (485)
T ss_pred             HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            344455566668888888888887654443        3442  3222  246889999999999999999999999999


Q ss_pred             hHHHHHhhHHHHHHHHHHHhh---hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHH
Q 016350          118 RRAFQLCALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (391)
Q Consensus       118 r~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  194 (391)
                      |..++++.++..++.++..++   +++.+++++|++.|+..|......+.++.|..|++.||....+.+.+..+|.+++.
T Consensus        90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~  169 (485)
T KOG0569|consen   90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ  169 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence            999999988888887776554   78899999999999999999999999999999999999999999999999999997


Q ss_pred             Hhcc-ccccccchhHHHHHHHHHHHHHHHHHhhccccchhHHHH-cCCHHHHHHHHHHHhCCCCchhHHHHhhh---ccc
Q 016350          195 LIGI-PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK-KGRTAEAEAEFEKLLGGSHVKSSLAELSK---LDR  269 (391)
Q Consensus       195 ~~~~-~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  269 (391)
                      .++. .+......|++.+.+..+++++..+...++||+|+|+.. +++.+++++.++..++.++...+.++..+   .++
T Consensus       170 ~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~  249 (485)
T KOG0569|consen  170 VLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEE  249 (485)
T ss_pred             HHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhc
Confidence            7763 333333339999999999999999999999999999988 79999999999999988765544433222   222


Q ss_pred             CCCCccccchhcccccchhH-HHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCCh---hHHHHHHHHHHHHHHHHHHHHH
Q 016350          270 GDDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLM  345 (391)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~  345 (391)
                      ..+++..++.++++++..+. ..+...+.....+.+.+.+..|..+++...+.+.   .+.....++...+.++++.++.
T Consensus       250 ~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~li  329 (485)
T KOG0569|consen  250 LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLI  329 (485)
T ss_pred             cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33346778999999887664 4556667777788888899999999998877664   4577888999999999999999


Q ss_pred             hhhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          346 DKLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      ||.|||++++++..++.+..+++...
T Consensus       330 d~~gRRpLll~~~~~~~~~~~~~~~~  355 (485)
T KOG0569|consen  330 DRLGRRPLLLISLSLMAVALLLMSIA  355 (485)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888887776643

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=3.6e-33  Score=254.31  Aligned_cols=311  Identities=14%  Similarity=0.096  Sum_probs=225.7

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      |.+|+.+.+++++++.++++...++...|.+.+|+|++.++.  |++.+++.+++++++++.|+++||+|||+++..+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence            345777888888999999999999999999999999998877  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc----
Q 016350          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE----  202 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----  202 (391)
                      +++++++++++++|++++++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++.+.+    
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887753    


Q ss_pred             --ccchhHHHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccch
Q 016350          203 --IAGWWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE  279 (391)
Q Consensus       203 --~~~~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (391)
                        ..+ ||+.|++.+++.++..+ .++++||+|+.... ..+++.+...+.........++..  ...++.+......++
T Consensus       162 ~~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  237 (412)
T TIGR02332       162 MALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQPE--GAFAHAAMPQRSMLR  237 (412)
T ss_pred             CCccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccccccccc--cccccccccHHHHHH
Confidence              246 99999998877766544 44667888742100 001111111111100000000000  000000000111233


Q ss_pred             hcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHH-HhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHH-HHHH
Q 016350          280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL-LQWS  357 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~  357 (391)
                      +++ ++.++...+..++.....+....+.|.|+.+. .+.+....+.......++..++.++.|+++||+++|+. ....
T Consensus       238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~  316 (412)
T TIGR02332       238 EIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALP  316 (412)
T ss_pred             Hhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHH
Confidence            344 46666666655555555555566677776552 12333456677888899999999999999999997764 3334


Q ss_pred             HHHHHHH
Q 016350          358 FFSMAVS  364 (391)
Q Consensus       358 ~~~~~~~  364 (391)
                      .....++
T Consensus       317 ~~~~~~~  323 (412)
T TIGR02332       317 YLFAAAG  323 (412)
T ss_pred             HHHHHHH
Confidence            4344433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.4e-32  Score=256.06  Aligned_cols=291  Identities=18%  Similarity=0.202  Sum_probs=207.8

Q ss_pred             hHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhH--HHH--HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 016350           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLA--EGL--VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (391)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~--~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  125 (391)
                      ++.+....++.+++.++...++...|.+.++++.+.++..  .+.  +.++..+++.+++++.|+++||+|||+++..+.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3456677889999999999999999999999976554321  111  247778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHH--------HHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhc
Q 016350          126 LPMIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (391)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  197 (391)
                      ++++++++++++++|+.+        ++++|+++|++.|..++....+++|++|+++||++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        788999999999999999999999999999999999999988888888777654


Q ss_pred             cccc--------cccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhccc
Q 016350          198 IPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDR  269 (391)
Q Consensus       198 ~~l~--------~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (391)
                      ..+.        ...| ||+.|++.+++.++..+....+||+|++...+++.++..+                     +.
T Consensus       175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~  232 (490)
T PRK10642        175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EG  232 (490)
T ss_pred             HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------cc
Confidence            3322        2456 9999999877666655555678999876533221111000                     00


Q ss_pred             CCCCccccchhcccccchhHHHH---HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 016350          270 GDDGDIVKFEELLYGRHFRVVFI---GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD  346 (391)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  346 (391)
                      ..+.+..++++++++ +.+....   ..++.....+....+.|.|+.+.++.+....+.......++..++.++.|+++|
T Consensus       233 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d  311 (490)
T PRK10642        233 LQDGPKVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD  311 (490)
T ss_pred             ccccccCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000112234455543 1122111   112222333344455666665544444333455666677888899999999999


Q ss_pred             hhCchHHHHHHHHHHHH
Q 016350          347 KLGRKALLQWSFFSMAV  363 (391)
Q Consensus       347 ~~~~~~~~~~~~~~~~~  363 (391)
                      |+|||+.+..+.+...+
T Consensus       312 r~grr~~~~~~~~~~~~  328 (490)
T PRK10642        312 RFGRRPFVILGSVALFV  328 (490)
T ss_pred             HhccHHHHHHHHHHHHH
Confidence            99999988777654443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=5.2e-32  Score=252.73  Aligned_cols=319  Identities=29%  Similarity=0.504  Sum_probs=232.1

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhh--------ccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL--------GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR  118 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr  118 (391)
                      +...+..++..++.+.++++...+++..|.+.+++        +.+..+.  +++.+++.++..++++++|+++||+|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr   85 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRR   85 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            44566677778889999999999999999999988        6555555  8999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHhh------------hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHH
Q 016350          119 RAFQLCALPMIIGASISATT------------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIAT  186 (391)
Q Consensus       119 ~~l~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  186 (391)
                      ++++.+.++++++.+.++++            +++..++++|+++|++.|...+...++++|++|+++|++++++.+.+.
T Consensus        86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~  165 (479)
T PRK10077         86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI  165 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence            99999999999998888763            235678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccc--------cccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCch
Q 016350          187 CLGLMGSLLIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVK  258 (391)
Q Consensus       187 ~~g~~~~~~~~~~l~--------~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (391)
                      .+|..+++.+++.+.        +..+ ||+.|++.+++.++..+..+++||+|+++..+++.++.++..++..+.....
T Consensus       166 ~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  244 (479)
T PRK10077        166 IFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT  244 (479)
T ss_pred             HHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH
Confidence            999998887765432        3446 9999999888887777777889999998877777776665555544333222


Q ss_pred             hHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCC---ChhHHHHHHHHHHH
Q 016350          259 SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANL  335 (391)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  335 (391)
                      ...++..+..+.+..   .....+. ..............+......+...+|.+...+..+.   .........++..+
T Consensus       245 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~  320 (479)
T PRK10077        245 QALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINL  320 (479)
T ss_pred             HHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence            222221111000000   0011111 0111111111222222233333444555655544443   34456667788899


Q ss_pred             HHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          336 LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       336 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      ++.+++++++||+|||+++..+..+++++.+.+....
T Consensus       321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~  357 (479)
T PRK10077        321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF  357 (479)
T ss_pred             HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888887776543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.7e-32  Score=256.36  Aligned_cols=323  Identities=17%  Similarity=0.217  Sum_probs=225.5

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhcc---CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF---NGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ  122 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~  122 (391)
                      .+.++..+.++.++.+.++++...++...|.+.+++..   ..+..+.+++.+.+.++..++++++|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            45566777788889999999999999999988775311   112223489999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHhhhh------HHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHh
Q 016350          123 LCALPMIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (391)
Q Consensus       123 ~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  196 (391)
                      .+.++..++.++++++++      +..++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++++.+
T Consensus        91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~  170 (502)
T TIGR00887        91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV  170 (502)
T ss_pred             HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988865      78999999999999999999999999999999999999999999999999888887


Q ss_pred             cccccc-----------------------ccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHH-HHHHHHHHHh
Q 016350          197 GIPVKE-----------------------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTA-EAEAEFEKLL  252 (391)
Q Consensus       197 ~~~l~~-----------------------~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~  252 (391)
                      +..+..                       ..+ ||+.|.+.+++.++..+..+++||+|+|+..+++++ ++.+.+.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~  249 (502)
T TIGR00887       171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL  249 (502)
T ss_pred             HHHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence            654321                       124 999999988888887777888999999998877764 3555555443


Q ss_pred             CCCCchhHHHHhhhcccCCCCccccchhccccc---chhHHHHH-HHHH---HHHhhhchhhHHHhHHHHHhhcCCChhH
Q 016350          253 GGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR---HFRVVFIG-STLF---ALQQLSGINAIFYFSSSVFKSAGLSSGL  325 (391)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (391)
                      +.+...+ .++.++.+++++....+++++++++   +.+...+. ....   .+..+....+.|.++.. .+.+....+.
T Consensus       250 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~  327 (502)
T TIGR00887       250 QVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATN  327 (502)
T ss_pred             ccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccch
Confidence            3211110 1111111111111123566776532   22122221 1111   11222222233333332 2322211110


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          326 ------------ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       326 ------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                                  ......++.+++.+++++++||+|||+++.++..++++++.++.+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence                        2333445667788999999999999999988887777776666543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=2.5e-32  Score=247.78  Aligned_cols=280  Identities=17%  Similarity=0.180  Sum_probs=217.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      +|..+..+.++.+..........+.+|.+.+|+|.+.++.  |++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            3444555555555555555556677899999999988877  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      +++++.+++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+.+..+ ||
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~  163 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WR  163 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888 99


Q ss_pred             HHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccch
Q 016350          209 ICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (391)
Q Consensus       209 ~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (391)
                      +.|++.++..++..+.. .+.||+|+    + ++++                               ..+.+++++++.+
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~~~~-------------------------------~~~~~~~~~~~~~  207 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPS----E-HSGS-------------------------------LKSLPLLFRRPAL  207 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC----C-Ccch-------------------------------HHHHHHHHhCcHH
Confidence            99999887776655443 44555432    0 0000                               0123456677777


Q ss_pred             hHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 016350          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  367 (391)
                      +......++.....+....+.+.|..+..+.+....+.......++.++++++.+++.||++||.. ..+..+..++...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~  286 (390)
T PRK03545        208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLL  286 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHH
Confidence            766555555554444445556666665556566667778888899999999999999999998764 4444444444433


Q ss_pred             H
Q 016350          368 Q  368 (391)
Q Consensus       368 ~  368 (391)
                      +
T Consensus       287 l  287 (390)
T PRK03545        287 L  287 (390)
T ss_pred             H
Confidence            3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=3e-31  Score=247.75  Aligned_cols=322  Identities=31%  Similarity=0.576  Sum_probs=231.7

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccC------cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA  120 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~  120 (391)
                      ++.+...+++.++.+...++...+.+..|.+..+++.+      .++.+.+++.+++.++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            33444555666677888889999999999999999887      334445999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHhh---hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhc
Q 016350          121 FQLCALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (391)
Q Consensus       121 l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  197 (391)
                      ++.+.++++++.+++.+.   .+++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999998654   34568999999999999999999999999999999999999999999999999999999


Q ss_pred             ---cccccccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHH-h---h-hccc
Q 016350          198 ---IPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE-L---S-KLDR  269 (391)
Q Consensus       198 ---~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~  269 (391)
                         ....+..+ ||+.|++.++..++..+..+++||+|++...+++.++..+..++....+.......+ .   . ..+.
T Consensus       184 ~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (481)
T TIGR00879       184 SGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI  262 (481)
T ss_pred             HHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence               66666667 999999977777777667788999988776666655544444433322211111100 0   0 0000


Q ss_pred             CCCCccccchhccccc--chhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCC---ChhHHHHHHHHHHHHHHHHHHHH
Q 016350          270 GDDGDIVKFEELLYGR--HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVL  344 (391)
Q Consensus       270 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l  344 (391)
                      +.......+.++++..  ..+..+....+..+...........+.+...+..+.   ..+.......++.+++.++.+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l  342 (481)
T TIGR00879       263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFL  342 (481)
T ss_pred             HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000111133333221  123333333333333333333444455544444343   34667778888999999999999


Q ss_pred             HhhhCchHHHHHHHHHHHHHHHHHH
Q 016350          345 MDKLGRKALLQWSFFSMAVSMAIQV  369 (391)
Q Consensus       345 ~d~~~~~~~~~~~~~~~~~~~~~~~  369 (391)
                      .||++||+.+.++..+.+++++++.
T Consensus       343 ~d~~~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       343 VDRFGRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888777777666

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.8e-31  Score=249.55  Aligned_cols=327  Identities=33%  Similarity=0.576  Sum_probs=262.7

Q ss_pred             chhhHHHHHHHHHHHHhhhh--hhcccchHHHhHhhhccCcc---h--hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYH--LGVVNEPLESISLDLGFNGN---T--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~---~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~  119 (391)
                      +...........+.+..+++  ....++....+.++...+..   +  .+.+|+.+++.++..++++++|+++|++|||+
T Consensus        41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~  120 (513)
T KOG0254|consen   41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK  120 (513)
T ss_pred             eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            34444555566667777775  55667777777775432211   1  23489999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccc
Q 016350          120 AFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (391)
Q Consensus       120 ~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  199 (391)
                      .++.+.+.+.++.+++++++|+.+++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++..
T Consensus       121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~  200 (513)
T KOG0254|consen  121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG  200 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999777666


Q ss_pred             cccc-cchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhC--CCCchhHHHHhhhcc---cCCCC
Q 016350          200 VKEI-AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG--GSHVKSSLAELSKLD---RGDDG  273 (391)
Q Consensus       200 l~~~-~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~  273 (391)
                      ..+. .+ ||..+.+..+++++..+..++.||+|+|+.++++.+++++.++.+.+  ..+...+..+.....   .....
T Consensus       201 ~~~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  279 (513)
T KOG0254|consen  201 TSKVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE  279 (513)
T ss_pred             hccCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence            5543 35 99999999999999888888899999999999999999999999988  333333333333111   11111


Q ss_pred             ccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCCh--hHHHHHHHHHHHHHHHHHHHHHhhhCch
Q 016350          274 DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS--GLANVFVGIANLLGSVVAMVLMDKLGRK  351 (391)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~  351 (391)
                      ....+.++++.+..+...+...+..+.++.+.+...+|.+.+++..+...  .......++..+++.+++.++.||+|||
T Consensus       280 ~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr  359 (513)
T KOG0254|consen  280 GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRR  359 (513)
T ss_pred             ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            11235556665566677778888888888888999999999998887764  4566777888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 016350          352 ALLQWSFFSMAVSMAIQVAASSS  374 (391)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~  374 (391)
                      +.++.+...+.++++++......
T Consensus       360 ~lll~s~~~m~~~~~~~~~~~~~  382 (513)
T KOG0254|consen  360 KLLLFGAAGMSICLVILAVVGVF  382 (513)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999888765433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=8.6e-32  Score=247.18  Aligned_cols=282  Identities=18%  Similarity=0.110  Sum_probs=203.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCc-chhHHHHHHH---HHHHHHHHHHHHHHHhhhcchhhHHHHHh
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG-NTLAEGLVVS---MCLGGAFIGSTLSGWIADGVGRRRAFQLC  124 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~s---~~~~~~~i~~~~~g~l~dr~Grr~~l~~~  124 (391)
                      ++..+...+++.+++.++...++...|.+.++++.+. +..+.+...+   ...++..++++++|+++||+|||+++..+
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3445566678889999999999999999999986321 1222233334   44455559999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHh
Q 016350          125 ALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (391)
Q Consensus       125 ~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  196 (391)
                      .++++++++++++++++.        .++++|+++|++.|..++...++++|++|+++|+++.++.+.+...|..+++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998874        588999999999999999999999999999999999999988888888888776


Q ss_pred             ccccc--------cccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcc
Q 016350          197 GIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD  268 (391)
Q Consensus       197 ~~~l~--------~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (391)
                      +..+.        +..+ ||+.|++.+++.++........||+|++..      +  +                     +
T Consensus       180 ~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~--~---------------------~  229 (432)
T PRK10406        180 VVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET------R--A---------------------L  229 (432)
T ss_pred             HHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h--h---------------------h
Confidence            54433        2456 999999988877766555555677653210      0  0                     0


Q ss_pred             cCCCCccccchhcccccchhHHHHHHHHH-HHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 016350          269 RGDDGDIVKFEELLYGRHFRVVFIGSTLF-ALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK  347 (391)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  347 (391)
                      +    +..++++++++++.+...+...+. ....+....+.|.|+.+.++.+..+.+.......++..++.++.|+++||
T Consensus       230 ~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr  305 (432)
T PRK10406        230 K----EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK  305 (432)
T ss_pred             c----ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0    011355667777666544433332 33334444556666655444443344556666677778888899999999


Q ss_pred             hCchHHHHHHHHHHHHH
Q 016350          348 LGRKALLQWSFFSMAVS  364 (391)
Q Consensus       348 ~~~~~~~~~~~~~~~~~  364 (391)
                      ++||+.+.++..+.++.
T Consensus       306 ~grr~~~~~~~~~~~~~  322 (432)
T PRK10406        306 IGRRTSMLCFGSLAALF  322 (432)
T ss_pred             cCchHHHHHHHHHHHHH
Confidence            99998877665544333

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.7e-31  Score=244.21  Aligned_cols=299  Identities=17%  Similarity=0.210  Sum_probs=222.8

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +.+++.+..+.++.+.++++.....+..|.+.+++|+++.+.  +++.+++.+++.+++++.|+++||+|||++++.+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~   91 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            444566778888888999999999999999999999998776  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      +.+++.++++++++++.++++|+++|++.+..++....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+ 
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-  170 (426)
T PRK12307         92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-  170 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888888778 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccc
Q 016350          207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH  286 (391)
Q Consensus       207 w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (391)
                      ||+.|++..+..++........||++++...+.+.            ..+         +.+.........++++++++.
T Consensus       171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~---------~~~~~~~~~~~~~~~~~~~~~  229 (426)
T PRK12307        171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGK---------HSQSAWSVFSLSMKGLFNRAQ  229 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccc---------ccccchhhhhHHHHHHHhhch
Confidence            99999886544433332223345553321110000            000         000000111224566777777


Q ss_pred             hhHHHHHHHHHHHH---hhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 016350          287 FRVVFIGSTLFALQ---QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (391)
Q Consensus       287 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (391)
                      ++............   .+....+.+.|..+ .+.+....+.......++.+++.++.+++.||++||+....+.++..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~  308 (426)
T PRK12307        230 FPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL  308 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            76544333222221   11223345555543 233333456677778889999999999999999999988888777666


Q ss_pred             HHHHHHH
Q 016350          364 SMAIQVA  370 (391)
Q Consensus       364 ~~~~~~~  370 (391)
                      ..+.+..
T Consensus       309 ~~~~~~~  315 (426)
T PRK12307        309 FIFPLFR  315 (426)
T ss_pred             HHHHHHH
Confidence            6554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=8.3e-32  Score=251.89  Aligned_cols=312  Identities=20%  Similarity=0.230  Sum_probs=244.0

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      .+..++++.+...++....++.+|.+.+++|.+.++.  +++.+.+.++..++.++.|+++||+|||++++.+.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            4567777888899999999999999999999987777  89999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Q 016350          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (391)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  211 (391)
                      .+++++++|++.++++|+++|++.+...+....++.|++|+++|+++.+++..+..+|..++|.+++.+.+..+ ||+.|
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f  159 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF  159 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHH--------HH--HHhCCCCc---h-hHHH----------Hhhh
Q 016350          212 WVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAE--------FE--KLLGGSHV---K-SSLA----------ELSK  266 (391)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~---~-~~~~----------~~~~  266 (391)
                      ++.+...++..+.. ++.||+++..  +++.+.....        ..  ...+....   . ....          ....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (485)
T TIGR00711       160 LINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV  237 (485)
T ss_pred             hhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            99877766655444 4456643211  1111110000        00  00010000   0 0000          0000


Q ss_pred             cccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 016350          267 LDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD  346 (391)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  346 (391)
                      .+.. ..++....+++++|+++...+..++..+..+....+.|.|+++.++.+..+.+....+..++..++.++.|++.|
T Consensus       238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~  316 (485)
T TIGR00711       238 WELT-DDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD  316 (485)
T ss_pred             HHHc-CCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0111 111222346788888888877777777777777778888888877777777888888899999999999999999


Q ss_pred             hhCchHHHHHHHHHHHHHHHHHH
Q 016350          347 KLGRKALLQWSFFSMAVSMAIQV  369 (391)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~  369 (391)
                      |++||+.+.++..+.+++..++.
T Consensus       317 r~~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       317 KIDPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999888888888877766

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=6.5e-31  Score=240.20  Aligned_cols=306  Identities=20%  Similarity=0.223  Sum_probs=222.8

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +++|+.+..++++.+.+.++....++..|.+.+++|++.++.  +++.+++.++..+++++.|+++||+|||++++.+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            456778888999999999999999999999999999988877  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc-
Q 016350          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-  205 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-  205 (391)
                      +.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888776543 


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccccc
Q 016350          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (391)
Q Consensus       206 ~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      .||+.|++.++..++..+.....||++++...++++++..+..++..+.....         +...++.....++..+.+
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  236 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI---------ANIVMTLAAAMVQSAGKR  236 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh---------hhhhhhhhHHhhhhhhhh
Confidence            39999998777666666666667887654322222111111111111100000         000000000011100001


Q ss_pred             c--hhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 016350          286 H--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (391)
Q Consensus       286 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (391)
                      .  +...................+.+.|..+.++.+..+.+.......++..++.++.+++.||++||+.+.++.....+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~  316 (405)
T TIGR00891       237 WPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL  316 (405)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence            0  11111222222222223334556666555555555567778888999999999999999999999988877665533

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.4e-32  Score=254.82  Aligned_cols=303  Identities=16%  Similarity=0.076  Sum_probs=225.7

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +..+..+.++.++++....++..+++..|.+.+|+|++.++.  |++.+++.+++++++++.|+++||+|||+++..+.+
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            335566777788888889999999999999999999988777  999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHh-----hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc
Q 016350          127 PMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (391)
Q Consensus       127 ~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (391)
                      +++++.+..++     ++|++.+++.|+++|++.+...+...++++||+|+++||+++|+...+..+|..+++++...+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            88887776655     5899999999999999999999999999999999999999999999999999999998876655


Q ss_pred             ccc--chhHHHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCcccc-
Q 016350          202 EIA--GWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-  277 (391)
Q Consensus       202 ~~~--~~w~~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  277 (391)
                      ...  ++||..|.+.+++.++..+.. ++.+++|+..... +.++   ..+   ..  ...   +....+.++...... 
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~~~---~~--~~~---~~~~~~~~~~~~~~~~  250 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---IFG---EP--ISE---EDKETESTDMTKWQIF  250 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---ccc---Cc--cch---hhhccccccCcHHHHH
Confidence            432  238999888777766654444 4456665321100 0110   000   00  000   000000000000011 


Q ss_pred             chhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHH
Q 016350          278 FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (391)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  357 (391)
                      .+..++++.+|...+..++..........+.|.|+.+.++.+..+++.......++..++.+++|+++||++||+.....
T Consensus       251 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~  330 (467)
T PRK09556        251 VEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVAC  330 (467)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            12367888888888777777766666667888888777776666677788888899999999999999999998876655


Q ss_pred             HHHHHH
Q 016350          358 FFSMAV  363 (391)
Q Consensus       358 ~~~~~~  363 (391)
                      .....+
T Consensus       331 ~~~~~~  336 (467)
T PRK09556        331 IALALI  336 (467)
T ss_pred             HHHHHH
Confidence            444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=9.3e-31  Score=239.09  Aligned_cols=292  Identities=20%  Similarity=0.250  Sum_probs=223.4

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  125 (391)
                      .+++|..+.+..+..+.++++....++..|.+.+++|.++++.  +++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV   87 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3466778888888899999999999999999999999987776  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      ++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         88 ALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             hhHHHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccc-
Q 016350          206 WWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY-  283 (391)
Q Consensus       206 ~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (391)
                       ||+.|++.++..++..+ ...++||+|++...++++++.++.                              .+..++ 
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~  216 (406)
T PRK11551        168 -WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV------------------------------LRALFGE  216 (406)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh------------------------------HHHHhhh
Confidence             99999987765555443 445678876543222111110000                              000111 


Q ss_pred             --ccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 016350          284 --GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (391)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  361 (391)
                        .+..+......++.....+....+.|.|..+ .+.+....+.......++..++.++.|++.||++||+.+..+....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  295 (406)
T PRK11551        217 GRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGI  295 (406)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence              1122222222333333333333445555543 3444455677888888999999999999999999999888776666


Q ss_pred             HHHHHHHHHH
Q 016350          362 AVSMAIQVAA  371 (391)
Q Consensus       362 ~~~~~~~~~~  371 (391)
                      .++++.+...
T Consensus       296 ~~~~~~~~~~  305 (406)
T PRK11551        296 LASLAALAAA  305 (406)
T ss_pred             HHHHHHHHhc
Confidence            6665555443

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=4.6e-31  Score=247.75  Aligned_cols=293  Identities=22%  Similarity=0.315  Sum_probs=228.8

Q ss_pred             chHHHhHhhhccC---cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q 016350           72 EPLESISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (391)
Q Consensus        72 ~~~~~i~~~~~~~---~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (391)
                      +..|.+.+|+|++   ..+.  +++.+++.++..+++++.|+++||+|||++++.+.++.+++++++++++|++.++++|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            5678999999997   4444  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhcc
Q 016350          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~  228 (391)
                      ++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.+    ||+.|++.+++.++..+..+++
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998876643    9999999888888877777889


Q ss_pred             ccchhHHHHcCCHHHHHHHHHHHhCCCCch--hHHHHhh-hcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhch
Q 016350          229 AESPHWLYKKGRTAEAEAEFEKLLGGSHVK--SSLAELS-KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI  305 (391)
Q Consensus       229 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (391)
                      ||+|+|+..+++.+++.+.+++..+.+...  .+..+.. +.+..++.+..+.++++++|.++...+...+..+.....+
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888877766654332211  1111110 0111111123467788888888776665554444333323


Q ss_pred             hhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhcc
Q 016350          306 NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  374 (391)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (391)
                      +..+.+.+.    .+.+........++..+++.++.+++.||+|||+.+.++.++.+++++++.+.+..
T Consensus       344 ~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~  408 (505)
T TIGR00898       344 YGLVLDLGN----LGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD  408 (505)
T ss_pred             HHHhccccc----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            333333322    22334455666778889999999999999999999999988888888777765543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.2e-30  Score=234.65  Aligned_cols=271  Identities=16%  Similarity=0.128  Sum_probs=207.7

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      .|+.+..+.++.+..........+.+|++.+++|.++++.  ++..+++.++..+++++.|+++||+|||++++.+.++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            4555555555555555555566678899999999998877  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      +++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|..++|.+++.+.+..+ ||
T Consensus        96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~  174 (394)
T PRK10213         96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WR  174 (394)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888 99


Q ss_pred             HHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccch
Q 016350          209 ICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (391)
Q Consensus       209 ~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (391)
                      +.|++.++..++..+.. ...||+|+    + ++ +                              ...+.++.+++|.+
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~~~~----~-~~-~------------------------------~~~~~~~~l~~~~~  218 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPSLPG----E-PS-H------------------------------QKQNTFRLLQRPGV  218 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCc----c-cc-c------------------------------chhHHHHHhcCHHH
Confidence            99998776666544433 33565431    0 00 0                              00112345667777


Q ss_pred             hHHHHHHHHHHHHhhhchhhH-HHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 016350          288 RVVFIGSTLFALQQLSGINAI-FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (391)
                      +...+..++.....+....+. |.|. +.++.+....+......+++..++.++.+++.||.+++ .+..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~  290 (394)
T PRK10213        219 MAGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLV  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHH
Confidence            766555444444444333444 3343 33455555567788888899999999999999995444 43333333

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=2.9e-31  Score=243.73  Aligned_cols=283  Identities=16%  Similarity=0.111  Sum_probs=215.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      ++.......++.+...++...++..+|.+.+++|++.++.  |++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            3455556667777778888888899999999999987776  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      +++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~  177 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WR  177 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999888888 99


Q ss_pred             HHHHHHHHHHHHHH-HHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCcccc-c-hhccccc
Q 016350          209 ICFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-F-EELLYGR  285 (391)
Q Consensus       209 ~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~  285 (391)
                      +.|++.+++.++.. +..++++|+|++...+...++..+.. +             ..+..+++..+..+ + ...++++
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~  243 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDAL-E-------------LAQQQEGAGLSRKEILTKYVLLNP  243 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccccc-c-------------cchhccccCCChhhhHHHHHhcCh
Confidence            99998877666543 34456777764321010000000000 0             00000000000111 1 1245667


Q ss_pred             chhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 016350          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL  348 (391)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  348 (391)
                      .++...+..++..........+.|.|+.+.++.+....+.......+++.+++++.|++.||+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            777766665555555555556677777655566666677788888999999999999999998

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.98  E-value=2e-30  Score=235.07  Aligned_cols=280  Identities=13%  Similarity=0.065  Sum_probs=216.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHH
Q 016350           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (391)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (391)
                      |.....++.+.+..... ...++.+|.+++|+|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+..+++
T Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~   85 (393)
T PRK09705          9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA   85 (393)
T ss_pred             HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence            43444444444443333 567899999999999998877  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (391)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  209 (391)
                      ++.+++++++|++.++++|+++|++.+...+....++.|++| ++|+++++.+..+...|..+++.+++.+.++..+||+
T Consensus        86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~  164 (393)
T PRK09705         86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ  164 (393)
T ss_pred             HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999999997 7899999999999999999999999888877523999


Q ss_pred             HHHHHHHHHHHHHHHhhcccc-chhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchh
Q 016350          210 CFWVSIVPAAILCLAMVFCAE-SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (391)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (391)
                      .+.+.++..++..+..+...+ .|+       .++                         ++    +.+.++.+++++.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------------------------~~----~~~~~~~l~~~~~~  208 (393)
T PRK09705        165 TLAWWALPAVVALFAWWWQSAREVA-------SSH-------------------------KT----TTTPVRVVFTPRAW  208 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc-------ccc-------------------------CC----CcCCcccccCHhHH
Confidence            887765554443333322211 110       000                         00    01123345566666


Q ss_pred             HHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 016350          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (391)
                      ...+...+..........+.+.|+.+ ++.+..+.+....+..++.++++++.+++.||++||+...++..+..++..++
T Consensus       209 ~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~  287 (393)
T PRK09705        209 TLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF  287 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            66655555555555666677777765 56666667888889999999999999999999999998888877777776655


Q ss_pred             HH
Q 016350          369 VA  370 (391)
Q Consensus       369 ~~  370 (391)
                      ..
T Consensus       288 ~~  289 (393)
T PRK09705        288 IW  289 (393)
T ss_pred             HH
Confidence            43

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.98  E-value=9.2e-31  Score=236.70  Aligned_cols=281  Identities=13%  Similarity=0.154  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      .+..+.+..+..........+.+|.+.+|+|.+.++.  |++.+.+.+++.++++++|+++||+|||+++..+..+.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG   81 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            3456666778888888888999999999999988777  89999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Q 016350          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (391)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  211 (391)
                      .+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ ||+.|
T Consensus        82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f  160 (382)
T PRK10091         82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTF  160 (382)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHH
Confidence            99999999999999999999999999888888899999999999999999999999999999999999888778 99999


Q ss_pred             HHHHHHHHHHHHH-hhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHH
Q 016350          212 WVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (391)
Q Consensus       212 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (391)
                      ++.++..++..+. .+++||.++    +.+. +.++                               ..+.++++..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~lp~~~~----~~~~-~~~~-------------------------------~~~~~~~~~~~~~  204 (382)
T PRK10091        161 LLIAVFNIAVLASIYFWVPDIRD----EAKG-GLRE-------------------------------QFHFLRSPAPWLI  204 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCc----cccc-CHHH-------------------------------HHHHhcChHHHHH
Confidence            9987776655443 345676531    1000 0000                               0112344555544


Q ss_pred             HHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 016350          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (391)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  370 (391)
                      .....+.....+....+++.|..+.++.+....+.......++..+++++.+++.||+++|+.+..+..+..++.+++..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~  284 (382)
T PRK10091        205 FAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF  284 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH
Confidence            43333332222222334444554444555555677888889999999999999999999999988888877777765544


Q ss_pred             H
Q 016350          371 A  371 (391)
Q Consensus       371 ~  371 (391)
                      .
T Consensus       285 ~  285 (382)
T PRK10091        285 F  285 (382)
T ss_pred             H
Confidence            3

>PRK09952 shikimate transporter; Provisional

Probab=99.98  E-value=8e-30  Score=234.21  Aligned_cols=292  Identities=18%  Similarity=0.101  Sum_probs=203.1

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHH-hHhhh--ccCcchhHHHHHH-----HHHHHHHHHHHHHHHHhhhcchh
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLES-ISLDL--GFNGNTLAEGLVV-----SMCLGGAFIGSTLSGWIADGVGR  117 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~~~~-----s~~~~~~~i~~~~~g~l~dr~Gr  117 (391)
                      ..++++.+....++.+.+.++...++...|. +.+++  +.++..   +++.     ++..++..+++++.|+++||+||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Gr   93 (438)
T PRK09952         17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGR   93 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence            3444566777788899999999998888774 55555  555442   4543     34456678999999999999999


Q ss_pred             hHHHHHhhHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHH
Q 016350          118 RRAFQLCALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG  189 (391)
Q Consensus       118 r~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  189 (391)
                      |++++.+.++++++++++++++|+.        .++++|+++|++.|..++....++.|++|+++|++..+....+..+|
T Consensus        94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999987        58889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccc--------ccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHH
Q 016350          190 LMGSLLIGIPVKE--------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL  261 (391)
Q Consensus       190 ~~~~~~~~~~l~~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (391)
                      .+++..+...+..        ..+ ||+.|++.+++.++........||+|++...+++.++.                 
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~-----------------  235 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA-----------------  235 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-----------------
Confidence            9888776654432        346 99999998877655544445577876543221110000                 


Q ss_pred             HHhhhcccCCCCccccchhcccccchhHHHH-HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 016350          262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFI-GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVV  340 (391)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (391)
                                +.+....+.++++++.+.... ..++.....+....+.+.|..+.++.+...........++...++.++
T Consensus       236 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~  305 (438)
T PRK09952        236 ----------KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPC  305 (438)
T ss_pred             ----------cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                      000001122444555444332 223333333444455666665544433222223444556777888899


Q ss_pred             HHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 016350          341 AMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       341 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (391)
                      .|+++||++||+.+..+.++..++.+.+
T Consensus       306 ~g~l~Dr~grr~~~~~~~~~~~~~~~~~  333 (438)
T PRK09952        306 FAWLADRFGRRRVYITGALIGTLSAFPF  333 (438)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            9999999999998887766655544333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=4.7e-30  Score=232.95  Aligned_cols=286  Identities=17%  Similarity=0.165  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      .+..+....+....+.....+.+|.+.+++|.++++.  +++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            3344444456667778888899999999999988777  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Q 016350          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (391)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  211 (391)
                      .+.++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+ ||+.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  162 (385)
T TIGR00710        84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIF  162 (385)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888778 99999


Q ss_pred             HHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHH
Q 016350          212 WVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (391)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (391)
                      ++.++..++..+.. ++.||+++.    +++++..+                           .....++++++|+++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~  211 (385)
T TIGR00710       163 AFLSLAGILLSALIFFILPETLPY----EARIQIST---------------------------YFETFLLLLKSKMFWGY  211 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCC----cccCCHHH---------------------------HHHHHHHHHcCchhHHH
Confidence            98777666654444 446665321    10000000                           01123455667777766


Q ss_pred             HHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 016350          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (391)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  370 (391)
                      .+...+............+.+..+.++.++...+.......++.+++.++.+++.||+++|+.+..+..+..++..++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       212 ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI  291 (385)
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            55554444444444445566666556666666777888888999999999999999999999888887777776666554


Q ss_pred             H
Q 016350          371 A  371 (391)
Q Consensus       371 ~  371 (391)
                      .
T Consensus       292 ~  292 (385)
T TIGR00710       292 T  292 (385)
T ss_pred             H
Confidence            4

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=6.9e-30  Score=229.49  Aligned_cols=278  Identities=12%  Similarity=0.045  Sum_probs=214.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  127 (391)
                      .++.+.+..++.++......+.+++.+.+.+ ++|++.+|.  +++.+++.++++++.++.|++.||+|.|+++.++.++
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll  109 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI  109 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            4567777778888888889999999998877 899998877  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-----hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc-
Q 016350          128 MIIGASISATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-  201 (391)
Q Consensus       128 ~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-  201 (391)
                      +++.++..+++     ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++.+.+. 
T Consensus       110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~  188 (462)
T PRK15034        110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF  188 (462)
T ss_pred             HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999987     8999999999999997 7788899999999999999999999997666666665555443322 


Q ss_pred             ----c-------------ccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHh
Q 016350          202 ----E-------------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL  264 (391)
Q Consensus       202 ----~-------------~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (391)
                          .             ..+ ||..+++..++.++..+..++..++++    +.                         
T Consensus       189 ~~l~~~~G~~~~~~~~g~~~~-~~~~~~~~~~~~iv~~i~~~~~~~~~~----~~-------------------------  238 (462)
T PRK15034        189 VPVFAFLGVNGVPQADGSVMS-LANAAWIWVPLLAIATIAAWSGMNDIA----SS-------------------------  238 (462)
T ss_pred             HHHHHHhccccccccccchHH-HHHHHHHHHHHHHHHHHHHHHhCCCcc----cc-------------------------
Confidence                1             222 888888877777666555544433311    00                         


Q ss_pred             hhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 016350          265 SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVL  344 (391)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  344 (391)
                             +....+..+.+|+|+.|...+.+++.+..+.+..+++|+|..+.+.  ............+...+.++++|++
T Consensus       239 -------~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~L  309 (462)
T PRK15034        239 -------RASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAI  309 (462)
T ss_pred             -------ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                   0011224457788999998888888777776666678888766442  1222223444567788899999999


Q ss_pred             HhhhCchHHHHHHHHHHHHHHHHH
Q 016350          345 MDKLGRKALLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       345 ~d~~~~~~~~~~~~~~~~~~~~~~  368 (391)
                      +||+|+++++.++++.+.++....
T Consensus       310 ADRiG~~~vl~~~~i~~~i~~~~~  333 (462)
T PRK15034        310 SDKFGGVRVTLINFIFMAIFSALL  333 (462)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHH
Confidence            999999999998888777766443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=3.8e-30  Score=229.72  Aligned_cols=249  Identities=13%  Similarity=0.012  Sum_probs=186.0

Q ss_pred             hhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHH
Q 016350           63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI  142 (391)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~  142 (391)
                      +......+++.+|.+.+|+|++.++.  |++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++|+.
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYE   80 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHH
Confidence            34455667899999999999988777  8999999999999999999999999999987766555545443333347999


Q ss_pred             HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH
Q 016350          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (391)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~  222 (391)
                      +++++|+++|++.+.. ......++|++|+++|++++++.+.+..+|..+++++++.+.+..+ ||+.|++.+++.++..
T Consensus        81 ~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        81 WLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHH
Confidence            9999999999999864 5556667999999999999999999999999999999999988888 9999999777666654


Q ss_pred             H-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHh
Q 016350          223 L-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ  301 (391)
Q Consensus       223 ~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (391)
                      + ..+++||+|++..   +..+..+                           ...++++++++|.+|...+..++.....
T Consensus       159 ~~~~~~lp~~p~~~~---~~~~~~~---------------------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~  208 (368)
T TIGR00903       159 ILVLAALPALPFQAA---EGFGFKD---------------------------AVKEFGALAGRKDLWIIGAILGFGVALF  208 (368)
T ss_pred             HHHHHHcCCCCCCCC---CCcchHH---------------------------HHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence            4 4567888875321   0000000                           0012567888899999888888888888


Q ss_pred             hhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCc
Q 016350          302 LSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR  350 (391)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  350 (391)
                      +...+|+|.|+.+ .+.+ ...+.......+.+.   +..++++||..|
T Consensus       209 ~~~~~wlp~~L~~-~g~s-~~~~~~~~l~~~~g~---~g~~~~~d~~~r  252 (368)
T TIGR00903       209 DNLAIWLEAALRP-AGLE-DIAGDAVALAILAGL---IGVAVIPDRVAR  252 (368)
T ss_pred             HHHHHHHHHHHHH-CCCC-hHHHHHHHHHHHHHH---HHHHHhhHHhhh
Confidence            7777788888854 3322 223444444444444   445778887654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=8.9e-30  Score=232.45  Aligned_cols=293  Identities=17%  Similarity=0.144  Sum_probs=227.8

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      ++.+.....+.+..+...+....+.+.+|.+.+++|.+.++.  ++..+.+.+++.+++++.|+++||+|||+++..+..
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   86 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            444555666677777778888888899999999999987776  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      ..+++.+.+.++++++.+++.|+++|++.+...+....++.|++|+++|.++.++......+|..++|.+++.+.+..+ 
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-  165 (406)
T PRK15402         87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-  165 (406)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence            9999999999999999999999999999999888889999999999999999999988888999999999998888777 


Q ss_pred             hHHHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccccc
Q 016350          207 WRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (391)
Q Consensus       207 w~~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      ||+.|++.++..++..+.. +..||+++..   +++.+ .+                          +...++++++++|
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~--------------------------~~~~~~~~~~~~~  215 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLS-LK--------------------------ELGRDYKLVLKNR  215 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc-HH--------------------------HHHHHHHHHHcCc
Confidence            9999998777766655543 4466653210   00000 00                          0011234567778


Q ss_pred             chhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 016350          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  365 (391)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  365 (391)
                      .++...+...+............+.|..+.++.+..+.+.......++..++.++.+++.||+++|+.+.++.....++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            87776665554444433333445666655555555555666666777888999999999999999999888888777777


Q ss_pred             HHHHHHh
Q 016350          366 AIQVAAS  372 (391)
Q Consensus       366 ~~~~~~~  372 (391)
                      +++....
T Consensus       296 ~~~~~~~  302 (406)
T PRK15402        296 LLAALAT  302 (406)
T ss_pred             HHHHHHH
Confidence            7766543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=2.1e-29  Score=231.57  Aligned_cols=280  Identities=20%  Similarity=0.249  Sum_probs=193.3

Q ss_pred             hHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHH-----HHHHHHHHHHHHHhhhcchhhHHHHHh
Q 016350           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC-----LGGAFIGSTLSGWIADGVGRRRAFQLC  124 (391)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~-----~~~~~i~~~~~g~l~dr~Grr~~l~~~  124 (391)
                      ++....++++.+++.++...++...|.+.+|++.++.+.. ++..+..     .++..+++++.|+++||+|||++++.+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            4467788889999999999999999999999998876642 2333322     222347899999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHh
Q 016350          125 ALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (391)
Q Consensus       125 ~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  196 (391)
                      .+++++++++++++++++        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987        468899999999999999889999999999999999999998888887777777


Q ss_pred             ccccc--------cccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcc
Q 016350          197 GIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD  268 (391)
Q Consensus       197 ~~~l~--------~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (391)
                      ++.+.        +..+ ||+.|++..+...+........||++++...+.                             
T Consensus       173 g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----------------------------  222 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-----------------------------  222 (434)
T ss_pred             HHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-----------------------------
Confidence            66542        3456 999998755433222222222333221100000                             


Q ss_pred             cCCCCccccchhcccccchhHH-HHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 016350          269 RGDDGDIVKFEELLYGRHFRVV-FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK  347 (391)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  347 (391)
                      +  .+....+++..+++..+.. ....++.....+....+.|.|+.+.++.+..+.+.......++++++.++.|+++||
T Consensus       223 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr  300 (434)
T PRK15075        223 R--PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR  300 (434)
T ss_pred             c--cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  0000011122222222222 111222222233334456666665555554456667777888899999999999999


Q ss_pred             hCchHHHHHHHHHHH
Q 016350          348 LGRKALLQWSFFSMA  362 (391)
Q Consensus       348 ~~~~~~~~~~~~~~~  362 (391)
                      ++||+....+.....
T Consensus       301 ~g~r~~~~~~~~~~~  315 (434)
T PRK15075        301 IGRRPVLIAFTVLAI  315 (434)
T ss_pred             hcchHHHHHHHHHHH
Confidence            999998777654443

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=1.4e-29  Score=229.85  Aligned_cols=285  Identities=16%  Similarity=0.138  Sum_probs=220.6

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      +++....++++.+..+......++.+|++.+++|++.++.  +++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3456667777888888888889999999999999988777  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc-ccchh
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAGWW  207 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~w  207 (391)
                      +++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+ |
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w  161 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-W  161 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence            99999999999999999999999999999888888999999999999999999988889998899988877654 456 9


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccch
Q 016350          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (391)
                      |+.|.+.+++.++..+..++ .+.|+.   ++++++                        ++. +.    .++. .++.+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~---~~~~~~------------------------~~~-~~----~~~~-~~~~~  207 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLF-SEFPAL---GKHAPK------------------------ADK-PV----AKEK-WGIGV  207 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCccc---cccCcc------------------------ccC-cc----cccc-CChHH
Confidence            99999877766655444332 222210   000000                        000 00    0011 12445


Q ss_pred             hHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 016350          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  367 (391)
                      +...+..++.....+....+.|.|+.+.++.+..+.+.......++..+++++.++++||+++|+.+.....+..+.+.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~  287 (394)
T PRK03699        208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL  287 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            55555555555555555677888887766766667788888888999999999999999999999888777666665555


Q ss_pred             HHH
Q 016350          368 QVA  370 (391)
Q Consensus       368 ~~~  370 (391)
                      +..
T Consensus       288 ~~~  290 (394)
T PRK03699        288 FVN  290 (394)
T ss_pred             HHH
Confidence            443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=5.1e-30  Score=238.02  Aligned_cols=288  Identities=14%  Similarity=0.096  Sum_probs=227.7

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHh----------------------hhccCcchhHHHHHHHHHHHHHHH
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISL----------------------DLGFNGNTLAEGLVVSMCLGGAFI  103 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~~~~~s~~~~~~~i  103 (391)
                      .+.++....++.++....+.++...+...+.+.+                      |++++..+.  |++.+.+.+++.+
T Consensus        14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~   91 (465)
T TIGR00894        14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQII   91 (465)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHHH
Confidence            4455667777788888888899888888887776                      777776665  9999999999999


Q ss_pred             HHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh--hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHH
Q 016350          104 GSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF  181 (391)
Q Consensus       104 ~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~  181 (391)
                      ++++.|+++||+|||+++..+.++++++++++.++  .++..+++.|+++|++.+...+....++.|++|+++|++++++
T Consensus        92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  171 (465)
T TIGR00894        92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM  171 (465)
T ss_pred             HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999999998887554  5688899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHHHHHHhhc-cccchhHHHHcCCHHHHHHHHHHHhCCCCchh
Q 016350          182 IQIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKS  259 (391)
Q Consensus       182 ~~~~~~~g~~~~~~~~~~l~~~~-~~w~~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (391)
                      ...+..+|..+++++++.+.+.. + ||+.|++.++..++..+.+++ .+|+|+...  ...++.++..++.        
T Consensus       172 ~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~i~~~--------  240 (465)
T TIGR00894       172 STSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHP--CISKFEKKYINSS--------  240 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHhh--------
Confidence            99999999999999999988874 7 999999988887777665544 555554211  1111111111110        


Q ss_pred             HHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 016350          260 SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSV  339 (391)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (391)
                           .+.++.+......++++++++.++...+..++.....+....++|.|+.+.++.+....+.......++..++.+
T Consensus       241 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~  315 (465)
T TIGR00894       241 -----LQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSI  315 (465)
T ss_pred             -----cccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHH
Confidence                 000111112234578889999999888888887777777677888888877777777788888888999999999


Q ss_pred             HHHHHHhhhCch
Q 016350          340 VAMVLMDKLGRK  351 (391)
Q Consensus       340 ~~g~l~d~~~~~  351 (391)
                      ++|+++||+++|
T Consensus       316 ~~g~l~d~~~~~  327 (465)
T TIGR00894       316 FAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHHc
Confidence            999999997543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=1.7e-29  Score=230.14  Aligned_cols=267  Identities=16%  Similarity=0.142  Sum_probs=210.1

Q ss_pred             HHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHH
Q 016350           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (391)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (391)
                      ..+.+..+...+......|.+|.+.+++|.+.++.  ++..+++.++++++++++|+++||+|||++++.+.++++++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~   96 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA   96 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence            33455566677888899999999999999988777  7999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                      ++++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+..+ ||+.|++
T Consensus        97 ~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~  175 (413)
T PRK15403         97 ATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAI  175 (413)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHH
Confidence            999999999999999999999887777778889999999999999999999999999999999999888777 9999999


Q ss_pred             HHHHHHHHHHH-hhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350          214 SIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (391)
Q Consensus       214 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      .++..++..+. .+++||+++.   ++++.+..                           ....++++++++|.++...+
T Consensus       176 ~~~~~~i~~~~~~~~lp~~~~~---~~~~~~~~---------------------------~~~~~~~~ll~~~~~~~~~l  225 (413)
T PRK15403        176 IAVMGLIAFVGLLLAMPETVKR---GAVPFSAK---------------------------SVLRDFRNVFRNRLFLTGAA  225 (413)
T ss_pred             HHHHHHHHHHHHHHhCCCCccc---cCCCCChH---------------------------HHHHHHHHHHcCHHHHHHHH
Confidence            88777766554 4557876421   10000000                           00123456778888887777


Q ss_pred             HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHH
Q 016350          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  353 (391)
                      ...+.....+......|.++.+.++.+..+.++.......+..++..+.+.+.++..+++.
T Consensus       226 ~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        226 TLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            6666665555555566777777666666667777777778888888888777655444333

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=9.5e-30  Score=236.80  Aligned_cols=314  Identities=18%  Similarity=0.200  Sum_probs=236.6

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      .+.+++++.+...++...+++.+|.+.+++|.+..+.  +++.+.+.++..++.+++|+++||+|||++++.+..+.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            4556677788888888888999999999999987776  89999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Q 016350          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (391)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  211 (391)
                      .++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++......+|..++|.+++.+.+..+ ||+.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888 99999


Q ss_pred             HHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHH--------H-HHhCCCC---chhHHH-----------Hhhhc
Q 016350          212 WVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEF--------E-KLLGGSH---VKSSLA-----------ELSKL  267 (391)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~--------~-~~~~~~~---~~~~~~-----------~~~~~  267 (391)
                      .+......+..+.. ...|+.+.   .+.+.+......        . ...+...   ......           .....
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH  244 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            98776666555444 33444321   111111110000        0 0001000   000000           00001


Q ss_pred             ccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 016350          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK  347 (391)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  347 (391)
                      ++...+ +....++++||.++......++............++|.+...+.++...++...+..++..++.++.+++.||
T Consensus       245 ~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r  323 (471)
T PRK10504        245 ARNNNR-ALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR  323 (471)
T ss_pred             HhcCCC-CccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111 2223357889999887777777666655555667778777667666677888888888888888999999999


Q ss_pred             hCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          348 LGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      +++|+++..+..+.+++..++.+..
T Consensus       324 ~g~~~~~~~~~~~~~~~~~~~~~~~  348 (471)
T PRK10504        324 FGYRRVLVATTLGLALVSLLFMLVA  348 (471)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999888887877766666543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=1.4e-29  Score=234.57  Aligned_cols=275  Identities=15%  Similarity=0.089  Sum_probs=200.3

Q ss_pred             hHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHH
Q 016350           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (391)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (391)
                      ++.+...+...+...+......+..|.+.+++|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            445555555666666666677888999999999988776  888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc----c---
Q 016350          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----E---  202 (391)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----~---  202 (391)
                      ++.++++++++++.++++|+++|++.+... ....+++|++|+++|++++++.+....+|..+++.+.+.+.    +   
T Consensus       113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999887654 45567899999999999999998777777666655544332    1   


Q ss_pred             --ccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchh
Q 016350          203 --IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE  280 (391)
Q Consensus       203 --~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (391)
                        ..+ ||+.|++.+++.++..+..++++++++    +++.++..+.                   .+.++......+++
T Consensus       192 ~~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~~~p----~~~~~~~~~~-------------------~~~~~~~~~~~~~~  247 (476)
T PLN00028        192 PSFTA-WRIAFFVPGLLHIIMGILVLTLGQDLP----DGNYRELKKS-------------------GTMPKDSFSKVLRY  247 (476)
T ss_pred             cchhh-hHHHHHHHHHHHHHHHHHHHHHcCcCC----CCchhhHHhc-------------------CccccccHHHHHHH
Confidence              235 999999988887776665555544321    1111110000                   00000001123455


Q ss_pred             cccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCch
Q 016350          281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK  351 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  351 (391)
                      .++++++|...+..++..........+.+.|+.+.++.+...++.......++..++++++|+++||++||
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        248 GVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            66777777766655554444444455667776655565555677788888999999999999999999865

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=5.7e-30  Score=233.23  Aligned_cols=279  Identities=17%  Similarity=0.138  Sum_probs=220.0

Q ss_pred             HHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh
Q 016350           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (391)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  139 (391)
                      ++...++...++...|.+.+++|.+.++.  +++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence            34556777788889999999999988777  8999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016350          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (391)
Q Consensus       140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~  219 (391)
                      |++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.++..+
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~  159 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGI  159 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998888888 9999998877766


Q ss_pred             HHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHH
Q 016350          220 ILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA  298 (391)
Q Consensus       220 ~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (391)
                      +..+.. ++.||+|+... ..++++..+..+....          ..+.++.++......++.+++|.++...+..++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (399)
T TIGR00893       160 IWGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGLLA----------EQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVN  228 (399)
T ss_pred             HHHHHhhheecCCCCccc-cCCHHHHhhcchhhcc----------ccccccccCCCccchHHHhcCHHHHHHHHHHHHHH
Confidence            655544 44566543110 0011111100000000          00011112223345667788888888777777777


Q ss_pred             HHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchH
Q 016350          299 LQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA  352 (391)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  352 (391)
                      ........+.+.|..+.++.+..+.+.......++..++.++.+++.||++||+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       229 IGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             hHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            776666677777877766666666778888889999999999999999999885

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=2.7e-29  Score=229.94  Aligned_cols=291  Identities=13%  Similarity=0.112  Sum_probs=217.3

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      ....+..+.+..+..++......+..|.+++++|+++++.  ++..+.+.+++.+++++.|++.||+|||+++..+..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4455666777778888888889999999999999988777  89999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc-c-
Q 016350          129 IIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-I-  203 (391)
Q Consensus       129 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~-  203 (391)
                      +++++++   +++++++.++++|+++|+|.|...+....++.|+.++++|++.+++.+..+.+|..+++.+++.+.. . 
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999875   5688999999999999999999999999999998877777778999999999999999988765430 0 


Q ss_pred             ----------------cc-------hhHHHHHHHH-HHHHHHHHH-hhccccchhHHHHcCCHHHHHHHHHHHhCCCCch
Q 016350          204 ----------------AG-------WWRICFWVSI-VPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVK  258 (391)
Q Consensus       204 ----------------~~-------~w~~~f~~~~-~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (391)
                                      .+       .||+.|+... +..++..+. ....||.+.    + ++++               
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~~~---------------  241 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NHSD---------------  241 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-cccc---------------
Confidence                            11       1666665433 333222222 222444211    0 0000               


Q ss_pred             hHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhH-HHHHhhcCCChhHHHHHHHHHHHHH
Q 016350          259 SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS-SSVFKSAGLSSGLANVFVGIANLLG  337 (391)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  337 (391)
                                ++..+...+.++++++|.++...+..++..........+.+.|+ ++.++.++...+.......++..+|
T Consensus       242 ----------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG  311 (438)
T PRK10133        242 ----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_pred             ----------ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence                      00001112345677888887766666666666555556666664 4455666666788899999999999


Q ss_pred             HHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          338 SVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       338 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      +++++++.||+++|+++..+..+..+++++..+.
T Consensus       312 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~  345 (438)
T PRK10133        312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA  345 (438)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999888877766665554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=6.6e-30  Score=231.21  Aligned_cols=285  Identities=19%  Similarity=0.129  Sum_probs=209.9

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +.......+..+. ....++..|.+.+++|++.++.  |++.+++.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~   82 (377)
T TIGR00890         6 LVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGF   82 (377)
T ss_pred             eHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHH
Confidence            3333333333333 4457889999999999988777  999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHH
Q 016350          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (391)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~  212 (391)
                      +++++++|++.++++|++.|++.+..++.....+.|++| ++|+++.++...+..+|..+++.+.+.+.+..+ ||+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~  160 (377)
T TIGR00890        83 TFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFI  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHH
Confidence            999999999999999999999999988888888999987 579999999999999998776666666666667 999999


Q ss_pred             HHHHHHHHHHHHhh-ccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHH
Q 016350          213 VSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (391)
Q Consensus       213 ~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (391)
                      +.++..++..+..+ +.+++|+.   +.++++                          +.+.+..+.++.++++.++...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~  211 (377)
T TIGR00890       161 YMGIIFLLVIVLGAFLIGYPPGQ---LIKTNI--------------------------EVSVKDYTVWEMLRTPQFWVLY  211 (377)
T ss_pred             HHHHHHHHHHHHHHHheecCchh---ccccCc--------------------------ccchhhhhHHHHHcCccHHHHH
Confidence            98887777655543 44443221   000000                          0000111234566777777665


Q ss_pred             HHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      ...++............+.|..+ ++.+....+.......++..+++++.|++.||++||+.+.++.....++.+++.+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  290 (377)
T TIGR00890       212 LSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI  290 (377)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc
Confidence            55444443333222333333322 23333335567778889999999999999999999999888888888877766654


Q ss_pred             h
Q 016350          372 S  372 (391)
Q Consensus       372 ~  372 (391)
                      +
T Consensus       291 ~  291 (377)
T TIGR00890       291 P  291 (377)
T ss_pred             c
Confidence            4

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=1.8e-30  Score=232.68  Aligned_cols=289  Identities=22%  Similarity=0.346  Sum_probs=221.8

Q ss_pred             HHHHHHhhhhhhcccchHH-HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH
Q 016350           57 TLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (391)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (391)
                      +++.++..++.....+.+| .+.+++|.+.++.  +++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            4566777788888889999 8999999998887  899999999999999999999999999999999999999997777


Q ss_pred             HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHH
Q 016350          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (391)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~  215 (391)
                      .+++|++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||+.|++.+
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~  158 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA  158 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred             hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence            7778888999999999999999999999999999999999999999999999999999999999998888 999999988


Q ss_pred             HHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccc-cchhcccccchhHHHHH
Q 016350          216 VPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV-KFEELLYGRHFRVVFIG  293 (391)
Q Consensus       216 ~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  293 (391)
                      +..++..++. .+++++++....+.+.++.                        ++.+.+.. .++.+.+++.+|.....
T Consensus       159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEPPPPRERESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA  214 (352)
T ss_dssp             HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred             chhhhhhhhHhhhhhhcccccccccccccc------------------------cccccccccccccccccchhhhhhhh
Confidence            8888876643 4455443211111111100                        00001111 25666777777645555


Q ss_pred             HHHHHHHhhhchhhHHHhHHHHHhhc-CCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          294 STLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      .++..+.......+.+.|+.+.++.+ ..+.+.......+.+.++.++.+++.||+++++..........+..+.+....
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (352)
T PF07690_consen  215 FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLP  294 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSH
T ss_pred             hhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555455555667777766677776 35566678888899999999999999999988777766666666555554433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4e-31  Score=228.15  Aligned_cols=281  Identities=19%  Similarity=0.190  Sum_probs=227.8

Q ss_pred             CCcchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 016350           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (391)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  123 (391)
                      .+.+..++.+.++++...++.+++..+....+.+++.+|++++..  |++.+.+.+.+.+++|++|+++|||.||+++.+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v  103 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV  103 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence            455666778889999999999999999999999999999998877  999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc
Q 016350          124 CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       124 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (391)
                      |.++++++.++++++..||+++++|.+.|+|.+...++.+.+++|.+|..+|++++++++.+..+|..+|.+.+..+.+.
T Consensus       104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhc-cccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcc
Q 016350          204 AGWWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (391)
                      .++|||.|+..+++.+++.++.++ .+|+++     +..++...+                 .+......+...+.+.+.
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~~-----------------~~~~~~~ts~~kDl~~l~  241 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDGE-----------------NKMVKPFTSVWKDLKVLA  241 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCccc-----ccccccccC-----------------CcCCCCccchHHHHHHHH
Confidence            888999999999999888776644 555422     211111100                 000111222233445556


Q ss_pred             cccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCC---hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 016350          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKL  348 (391)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~  348 (391)
                      +++.+....+......+.......+.|.+.+..+...+.+   ...+..+...++.+|.+++|.++||+
T Consensus       242 ~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  242 KIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             ccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence            6677776666666666666665567777777666655432   23466667788899999999999994

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=2.7e-29  Score=226.26  Aligned_cols=287  Identities=16%  Similarity=0.124  Sum_probs=225.3

Q ss_pred             HHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH
Q 016350           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (391)
                      +..+.++..+......+.+|.+.++++.+..+.  +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            345667777777778889999999998877666  999999999999999999999999999999999999999999988


Q ss_pred             Hhhh-----hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHH
Q 016350          136 ATTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (391)
Q Consensus       136 ~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  210 (391)
                      ++++     +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++.+.+..+ ||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~  160 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWA  160 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Confidence            8888     999999999999999999999999999999999999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHHHhhcc--ccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchh
Q 016350          211 FWVSIVPAAILCLAMVFC--AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (391)
Q Consensus       211 f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (391)
                      |++.++..++..+..+.+  ||+++    +++++..++..+                       +....+++++++|.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~  213 (365)
T TIGR00900       161 IWVDAVGFAISALLIVSVRIPELAA----SEIQALSNAVLR-----------------------DTREGIKFVLKNPLLR  213 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCC----ccccccchhHHH-----------------------HHHhHHHHHHcCcHHH
Confidence            988777666554444333  22211    000000000000                       0011244566778887


Q ss_pred             HHHHHHHHHHHHhhhch-hhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 016350          289 VVFIGSTLFALQQLSGI-NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (391)
Q Consensus       289 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  367 (391)
                      ......++......... ...+.|..+.++.+..+.+.......++..++.++.+++.||.+||+.+..+..+.+++++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  293 (365)
T TIGR00900       214 TLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV  293 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence            77666666555554444 56777777766766667788888889999999999999999999999888887777777766


Q ss_pred             HHHHh
Q 016350          368 QVAAS  372 (391)
Q Consensus       368 ~~~~~  372 (391)
                      +.+..
T Consensus       294 ~~~~~  298 (365)
T TIGR00900       294 VGLTP  298 (365)
T ss_pred             HHhhc
Confidence            66554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=8e-30  Score=229.81  Aligned_cols=294  Identities=17%  Similarity=0.163  Sum_probs=216.6

Q ss_pred             HHHHHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           54 LVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      ...+++.+..........+..|. +.+++|+++++.  +++.+++.+++.+++++.|+++||+|||++++.+.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            34666667777778888999995 999999988877  899999999999999999999999999999999999999999


Q ss_pred             HHHHhhh-hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc---------
Q 016350          133 SISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---------  202 (391)
Q Consensus       133 ~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------  202 (391)
                      +++++++ +++.+++.|+++|++.+. .+....+++|++|+++|+++.++......+|..+++.+++.+..         
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999 999999999999998654 45678899999999999999999997777777777777655443         


Q ss_pred             -ccchhHHHHH-HHHHHHHH-HHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccch
Q 016350          203 -IAGWWRICFW-VSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE  279 (391)
Q Consensus       203 -~~~~w~~~f~-~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (391)
                       ..+ ||+.|+ ..++...+ ..+...+.+|+|+.    +++++ +...+   +..            ...++.......
T Consensus       161 ~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~---~~~------------~~~~~~~~~~~~  219 (366)
T TIGR00886       161 AHLA-WGWAFVIVPAGILLLPALLIFFVGADTPPG----KPATG-KLSFK---GAR------------WSVGTGALGDQL  219 (366)
T ss_pred             cccc-ccchhHHHHHHHHHHHHHHHHHhcccCCcc----cccch-hcccc---ccc------------ccccchhHHHHH
Confidence             225 999984 43444333 33344556665531    11100 00000   000            000000111345


Q ss_pred             hcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHH
Q 016350          280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (391)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  359 (391)
                      +.+++|.++...+..++..........+.+.|..+.++.+..+.+.......+.+.+++++.|++.||+++|+....+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~  299 (366)
T TIGR00886       220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFL  299 (366)
T ss_pred             HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHH
Confidence            67777888777766666655555656677888877777666677878888888999999999999999999888777766


Q ss_pred             HHHHHHHHHHHH
Q 016350          360 SMAVSMAIQVAA  371 (391)
Q Consensus       360 ~~~~~~~~~~~~  371 (391)
                      ....+..++.+.
T Consensus       300 ~~~~~~~~~~~~  311 (366)
T TIGR00886       300 GVAMGAFLVVLG  311 (366)
T ss_pred             HHHHHHHHHHhc
Confidence            666665555543

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=4.3e-29  Score=227.60  Aligned_cols=311  Identities=20%  Similarity=0.265  Sum_probs=214.4

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +.+++.+....+..+..+++.....+..|.+.+++|.+..+.  +++.+.+.++..++.++.|+++||+|||+++..+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~   90 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL   90 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence            344556666667777778888888889999999999987776  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      +.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-  169 (398)
T TIGR00895        91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-  169 (398)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988888 


Q ss_pred             hHHHHHHHHHHHHH-HHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccccc
Q 016350          207 WRICFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (391)
Q Consensus       207 w~~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                      ||+.|++.++..++ ..+...++||++++...+ ++++..+..++......... ..+..+.+.+.+......+.+++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
T TIGR00895       170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA-QSALPEQKATQGTKRSVFKALFQGK  247 (398)
T ss_pred             ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc-cccccccccccchhhHHHHHHhcch
Confidence            99999887644444 444556688887654433 22222222222111100000 0000000000001111122233333


Q ss_pred             chhH---HHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 016350          286 HFRV---VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA  362 (391)
Q Consensus       286 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (391)
                      ..+.   .....++..........+.+ +....++.+....+.......++.+++.++.+++.||+++|.... ......
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~  325 (398)
T TIGR00895       248 TARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGA  325 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHH
Confidence            2222   22222222222222223333 222233444445667788888999999999999999999984443 333333


Q ss_pred             HH
Q 016350          363 VS  364 (391)
Q Consensus       363 ~~  364 (391)
                      +.
T Consensus       326 ~~  327 (398)
T TIGR00895       326 VF  327 (398)
T ss_pred             HH
Confidence            33

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=1.2e-28  Score=231.17  Aligned_cols=319  Identities=18%  Similarity=0.233  Sum_probs=219.2

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +.+++.+..++++.+...++....++.+|.+.+++|++.++.  +++.+.+.+++.+++++.|+++||+|||++++.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            345667778888899999999999999999999999988777  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      +.+++.++.++++|++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+.+..+ 
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-  172 (496)
T PRK03893         94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-  172 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988888 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHH-H------h-hhcccCCCCcccc-
Q 016350          207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA-E------L-SKLDRGDDGDIVK-  277 (391)
Q Consensus       207 w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~~~~~~~~~~~~~-  277 (391)
                      ||+.|++..+..++..+.....||++++...+++.++..+..+.....+....... .      . ............. 
T Consensus       173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
T PRK03893        173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVA  252 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence            99999886555544444445567765443222111111111111100000000000 0      0 0000000000000 


Q ss_pred             ------------chhcccccchhH---HHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q 016350          278 ------------FEELLYGRHFRV---VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAM  342 (391)
Q Consensus       278 ------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  342 (391)
                                  ...-.+.++...   .....+......+....++|.|+.+.++.+..+.+.......++.+++.++.|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g  332 (496)
T PRK03893        253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG  332 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        000000000000   00111111111111223456666544555555677888889999999999999


Q ss_pred             HHHhhhCchHHHHHHHHHHHHHHHHH
Q 016350          343 VLMDKLGRKALLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       343 ~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (391)
                      ++.||++||+.+..+..+..+..+++
T Consensus       333 ~l~dr~g~~~~~~~~~~~~~~~~~~~  358 (496)
T PRK03893        333 FLGDWLGTRKAYVCSLLISQLLIIPV  358 (496)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            99999999998887766655554433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=8.8e-29  Score=224.90  Aligned_cols=286  Identities=17%  Similarity=0.132  Sum_probs=217.0

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +.+.....+..........+.+|.+.+++|.+.++.  ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence            344555566666666677789999999999987776  899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHH
Q 016350          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (391)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~  212 (391)
                      +++..+++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~  161 (392)
T PRK10473         83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFY  161 (392)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988877777 999999


Q ss_pred             HHHHHHHHHHHH-hhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHH
Q 016350          213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (391)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (391)
                      +.++..++..+. .+++||+++..  ++++.+                              .....++.++++.++...
T Consensus       162 ~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~~~  209 (392)
T PRK10473        162 TMAAMGILVLLLSLFILKETRPAR--APAASS------------------------------KPRENSESLLNRFFLSRL  209 (392)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcc--cCCccc------------------------------hHHHHHHHHhCHHHHHHH
Confidence            887766665444 45566653210  000000                              001122345556555444


Q ss_pred             HHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      +...+............+.+..+.++.+....+......+++.+++.++.+++.||++||+.+.++..+..++.+.+.+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        210 VITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333332222223334445544445444445667778888999999999999999999999988888877777766665


Q ss_pred             hc
Q 016350          372 SS  373 (391)
Q Consensus       372 ~~  373 (391)
                      ..
T Consensus       290 ~~  291 (392)
T PRK10473        290 PS  291 (392)
T ss_pred             HH
Confidence            43

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=6.6e-29  Score=229.33  Aligned_cols=287  Identities=13%  Similarity=0.100  Sum_probs=204.6

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      +|..+....+.......++...+...|.+.++ |++.++.  +++.+.+.+++++++++.|+++||+|||++++.+.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~  103 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  103 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence            34444555555566666666667788988888 9887776  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh----hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHH-HHHHHhccccccc
Q 016350          129 IIGASISATTR----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEI  203 (391)
Q Consensus       129 ~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~  203 (391)
                      +++.+.+++++    +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|. +.+++.+..+...
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            99999888763    788889999999999998888888889999999999999999999999885 4566554333333


Q ss_pred             cchhHHHHHHHHHHHHHH-HHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCcccc-chhc
Q 016350          204 AGWWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-FEEL  281 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  281 (391)
                      .+ ||+.|++.+++.++. ++..+++||+|+....+ +.++.++...   .         +..+.++++.+.... ...+
T Consensus       184 ~g-w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~  249 (452)
T PRK11273        184 ND-WHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKNDYP---D---------DYNEKHEQELTAKQIFMQYV  249 (452)
T ss_pred             cc-HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhhccc---c---------ccccccCCCccHHHHHHHHH
Confidence            45 999999877766664 44456678876532111 1111000000   0         000000000000111 1235


Q ss_pred             ccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh--CchH
Q 016350          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKA  352 (391)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~  352 (391)
                      ++++.+|...+..++.....+....++|.|+.+..+.+....+....+..++.+++.++.|+++||+  +||.
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        250 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            6788888877777676666666667788888776665555667777788889999999999999998  4454

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=4.1e-28  Score=219.45  Aligned_cols=277  Identities=18%  Similarity=0.145  Sum_probs=206.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHH
Q 016350           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (391)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (391)
                      .+.+..+.++.++.........+.+|.+.+++|.+.++.  |++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344667778888889999999999999999999987766  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (391)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  209 (391)
                      ++.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++.+..+..+|..+|+.+++.+.+... |..
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~  161 (381)
T PRK03633         83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVL  161 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chH
Confidence            9999999999999999999999999999988888888899999999999999999999999999999998876542 222


Q ss_pred             HHHHHHHHHHHHHHHhh-ccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchh
Q 016350          210 CFWVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (391)
Q Consensus       210 ~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (391)
                      .+. .+..........+ ..+|++      .+                            +   ++..+..+.+++|.++
T Consensus       162 ~~~-~~~~~~~~~~~~~~~~~~~~------~~----------------------------~---~~~~~~~~~~~~~~~~  203 (381)
T PRK03633        162 PWV-TGLVLAAILPLLFTRILNQQ------AE----------------------------N---HDSTSIWPMLKLRQAR  203 (381)
T ss_pred             HHH-HHHHHHHHHHHHHhcccCCC------CC----------------------------C---CCCCCHHHHHHhcchH
Confidence            222 2222211111111 111110      00                            0   0011234556667766


Q ss_pred             HHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 016350          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (391)
                      ......+.........+.++|.|.++ .+.+....+.......++.+++++..|++.||+++|+.+..+.....++.+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~  282 (381)
T PRK03633        204 LGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM  282 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            54433333333333334456666654 23333345667778888999999999999999999998888777777665544

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=6.4e-28  Score=219.90  Aligned_cols=273  Identities=19%  Similarity=0.189  Sum_probs=206.5

Q ss_pred             HHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH
Q 016350           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (391)
                      +........+....+.|.+|.+.+++|.++++.  ++..+++.+++.++++++|+++||+|||+++..+.++.+++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   88 (401)
T PRK11043         11 LAGLSMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM   88 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            333345555667788899999999999987776  999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHH
Q 016350          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (391)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~  215 (391)
                      +++++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..+ ||+.|++.+
T Consensus        89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~  167 (401)
T PRK11043         89 LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLF  167 (401)
T ss_pred             HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHH
Confidence            9999999999999999999988888888899999999999999999988899999999999999988888 999999887


Q ss_pred             HHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHH
Q 016350          216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (391)
Q Consensus       216 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (391)
                      +..++..+..++++|+++    ++++++                              ...+++++++++.++...+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~----~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~  213 (401)
T PRK11043        168 AITLLLILPTLRLKPSKK----ARKQSQ------------------------------DALTFKQLLKSKTYLGNVLIFA  213 (401)
T ss_pred             HHHHHHHHHHHHcCCCCC----ccccch------------------------------HHHHHHHHHcChhHHHHHHHHH
Confidence            777776665555655432    100000                              0112344566666655444333


Q ss_pred             HHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 016350          296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (391)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  366 (391)
                      +.....+....+.+.+..+ ++.+....+.......++..++.++.+++.||+++|+.........+++.+
T Consensus       214 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~  283 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVI  283 (401)
T ss_pred             HHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            3333333333445555543 344444456666667788889999999999999998876655555444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.8e-28  Score=210.28  Aligned_cols=290  Identities=15%  Similarity=0.102  Sum_probs=242.8

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +.+.+.+.+..+...+..+-+.+.+++.+.+.+|+|+|++|.  +++.++..+..++..++.|.+.||+|.|++...+.+
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            334556666677777777888888999999999999999988  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhH---HHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc
Q 016350          127 PMIIGASISATTRNL---IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~---~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (391)
                      +..+.++..+++.++   +++++++++.|++.+. +.....++++|||||++|.++|+.. ..++|..+..++++.+...
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~  165 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence            999999999998654   4999999999996554 4677889999999999999999999 8899999999999988887


Q ss_pred             cch--hHHHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchh
Q 016350          204 AGW--WRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE  280 (391)
Q Consensus       204 ~~~--w~~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (391)
                      .+.  ||..-.+..+..++..+.. +...+.|+.....+                                +..+...+.
T Consensus       166 ~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~--------------------------------~~~~~~~~~  213 (417)
T COG2223         166 FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK--------------------------------PQLPAQLKA  213 (417)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc--------------------------------ccchhHHHH
Confidence            773  8988888777777755554 44544443210000                                000033556


Q ss_pred             cccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 016350          281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (391)
                      ++++++.|...+.++..+........+++.|+.+.++.+..+++.......+.+.+.++++|+++||+|.++.+.+.+..
T Consensus       214 v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~  293 (417)
T COG2223         214 VFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG  293 (417)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHH
Confidence            77789999999999999999988889999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHh
Q 016350          361 MAVSMAIQVAAS  372 (391)
Q Consensus       361 ~~~~~~~~~~~~  372 (391)
                      ++++........
T Consensus       294 ~~~~~~~l~~~~  305 (417)
T COG2223         294 MALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHccc
Confidence            888888877665

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=3.2e-29  Score=226.89  Aligned_cols=276  Identities=16%  Similarity=0.111  Sum_probs=212.0

Q ss_pred             HHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh
Q 016350           59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (391)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  138 (391)
                      +++...++....++..|.+.+++|.+.++.  +++.+++.++..++.++.|+++||+|||++++.+.++.+++.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   80 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS   80 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence            455667788888889999999999988877  899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHH-HhccccccccchhHHHHHHHHHH
Q 016350          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL-LIGIPVKEIAGWWRICFWVSIVP  217 (391)
Q Consensus       139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~w~~~f~~~~~~  217 (391)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++ .+++.+.+..+ ||+.|++.+++
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  159 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGII  159 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 56666666667 99999987776


Q ss_pred             HHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHH
Q 016350          218 AAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (391)
Q Consensus       218 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (391)
                      .++..+ ..++.+|+|+....+.++++..+.      .+      .+..+.+++........++++++|.++...+..++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (379)
T TIGR00881       160 AIIVSLICFLLLRDSPQSCGLPPAEEMPNEE------PD------GDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF  227 (379)
T ss_pred             HHHHHHHHheeeCCCccccccCccccCcccc------cc------cccccccccccchHHHHHHHHhcchHHHHHHHHHH
Confidence            665544 445566665321100000000000      00      00000001111122334567788888877777776


Q ss_pred             HHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhC
Q 016350          297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG  349 (391)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  349 (391)
                      ..........+.+.|..+.++.+..+.+.......++..++.++.+++.||..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       228 VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            66666666667778877766666666788888889999999999999999864

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=1e-27  Score=218.01  Aligned_cols=267  Identities=14%  Similarity=0.167  Sum_probs=203.7

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      .++.+.+..+......+......|.+|.+.+++|.++++.  +++.+.+.+++.++++++|+++||+|||+++..+..+.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            3555666666666767777788899999999999988877  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      .++.+++.++++++.+++.|++.|++.+...+....+..|.+++++|+++.+..+.+..+|..++|.+++.+.+..+ ||
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~  162 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR  162 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence            99999999999999999999999999998888888899999999999999999999999999999999999888778 99


Q ss_pred             HHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccch
Q 016350          209 ICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (391)
Q Consensus       209 ~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (391)
                      +.|++.++..++..+ ..++.||+++.   ++++++.                              ...+++.+++|.+
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------------------~~~~~~~~~~~~~  209 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETRPA---DARRTRV------------------------------LASYRTLLSNRRF  209 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCcc---ccchhHH------------------------------HHHHHHHHcChHH
Confidence            999987766655443 34556776421   0010000                              1123345566666


Q ss_pred             hHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCch
Q 016350          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK  351 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  351 (391)
                      +...+..+.............+.+..+.++.+....+.......++.+++.++.+++.||.+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  273 (394)
T PRK11652        210 NCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  273 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6544443333333222233445555555555555556666677778888888889999988743

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.2e-28  Score=221.73  Aligned_cols=301  Identities=17%  Similarity=0.157  Sum_probs=232.4

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhccc-chHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVN-EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  125 (391)
                      |.....+..++..++....+...++ +.+-.+.+|.+...++.  +.+.+++.++++++.++++.+.||++..+.+....
T Consensus        41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~  118 (495)
T KOG2533|consen   41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG  118 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH
Confidence            3334444555555666666654432 33445668888877777  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc----
Q 016350          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----  201 (391)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----  201 (391)
                      +++++..++.+..+|++.+++.|++.|+..+..+|....+++.||.+++|++.++++.+...+|.++|.+++..+.    
T Consensus       119 ~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~  198 (495)
T KOG2533|consen  119 ILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG  198 (495)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence            9999999888889999999999999999999999999999999999999999999999999999999999998863    


Q ss_pred             --cccchhHHHHHHHHHHHHHHHHH-hhccccchhHH--HHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccc
Q 016350          202 --EIAGWWRICFWVSIVPAAILCLA-MVFCAESPHWL--YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV  276 (391)
Q Consensus       202 --~~~~~w~~~f~~~~~~~~~~~~~-~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (391)
                        ...| |||.|++.+++.++..+. ++++|+.|...  ..+++++-..+..++             .......++.+..
T Consensus       199 ~~~~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~-------------~~~~~~~~~~~~~  264 (495)
T KOG2533|consen  199 SGGLAG-WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRE-------------SPSGGIENKFKWK  264 (495)
T ss_pred             CCCcCC-ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHh-------------ccCCCcccccCHH
Confidence              3345 999999998888877654 57789988621  111111000011100             0001111114556


Q ss_pred             cchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh----hCchH
Q 016350          277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK----LGRKA  352 (391)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~  352 (391)
                      .+++.++++..|...++.++......+..++.|.|+.+..+.+..+++.+..+..++++++.+++|+++||    ..+|.
T Consensus       265 ~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~  344 (495)
T KOG2533|consen  265 GFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRL  344 (495)
T ss_pred             HHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHH
Confidence            78889999999999999999999988888888888887445667778889999999999999999999999    55565


Q ss_pred             HHHHHHHHHHH
Q 016350          353 LLQWSFFSMAV  363 (391)
Q Consensus       353 ~~~~~~~~~~~  363 (391)
                      .......+..+
T Consensus       345 ~~~~~~~~~~~  355 (495)
T KOG2533|consen  345 LFIVFLCLYAI  355 (495)
T ss_pred             HHHHHHHHHHH
Confidence            55554444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=6.2e-28  Score=218.36  Aligned_cols=268  Identities=15%  Similarity=0.198  Sum_probs=209.6

Q ss_pred             hhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 016350           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (391)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l  144 (391)
                      +...+..|.+|.+.+++|+++++.  +++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            445667799999999999988777  899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH
Q 016350          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~  224 (391)
                      ++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+ ||+.|++.++..++..+.
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  161 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988777 999999877776665444


Q ss_pred             -hhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhh
Q 016350          225 -MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLS  303 (391)
Q Consensus       225 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (391)
                       .++.||+++..  ++++.+.                           ++...++++.+++|..+...+...+.......
T Consensus       162 ~~~~~~~~~~~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (377)
T PRK11102        162 VFFFIPETLPKE--RRQPFHL---------------------------RTTIRNFASLFRHKRVLGYMLASGFSFAGMFS  212 (377)
T ss_pred             HHHhCCccCccc--ccCCCCh---------------------------HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence             45566653210  0000000                           00011234566667766555544444433333


Q ss_pred             chhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 016350          304 GINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  364 (391)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  364 (391)
                      ...+.+.+..+.++.+..+.+.......++..++.++.+++.||+++|+.+..+.....+.
T Consensus       213 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        213 FLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            3344455555555656566778888889999999999999999999999888777654443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=8.9e-28  Score=217.50  Aligned_cols=272  Identities=13%  Similarity=0.058  Sum_probs=205.3

Q ss_pred             HHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (391)
                      .++++.++..++........+.+.+|++.+..+.  +++.+.+.+++.++.+++|+++||+|||++++.+.++.+++++.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            4556667766655555666677788988876655  89999999999999999999999999999999999999999988


Q ss_pred             HHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHH
Q 016350          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (391)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~  214 (391)
                      ++++.+.   ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++.+.+..  |+..+.+.
T Consensus        85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~  159 (393)
T PRK11195         85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVC  159 (393)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            8777664   778999999999999999999999999999999999999999999999999999998753  77777666


Q ss_pred             HHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHH
Q 016350          215 IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS  294 (391)
Q Consensus       215 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (391)
                      +...++..+..+.+||+|+...  +++.+..+..+             +.          ....+.++++|.++......
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~-------------~~----------~~~~~~l~~~~~~~~~~~~~  214 (393)
T PRK11195        160 ALIYLLAALFNLFIPRLGARRP--GQSWNPIALLR-------------DF----------FHACRVLWRDKLGRFSLAGT  214 (393)
T ss_pred             HHHHHHHHHHHhcCCCCccccc--ccCCCHHHHHH-------------HH----------HHHHHHHHhCchhHHHHHHH
Confidence            5554444455566777653211  00000000000             00          00123556667766555444


Q ss_pred             HHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHH
Q 016350          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSF  358 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  358 (391)
                      .+............+.|.++.++.++.+.|......+++.++++++.+++.||.++++.+..+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            4444444444456667888888888888899999999999999999999999988887776664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=1.3e-27  Score=217.72  Aligned_cols=278  Identities=18%  Similarity=0.173  Sum_probs=201.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           50 FPHVLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      ++.+..+.+..++..++..+..+.+|. +.+++|.+..+.  |++.+++.+++.+++++.|+++||+|||++++.+.++.
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            344566777788888888888899986 678899987776  99999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhh--------hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccc
Q 016350          129 IIGASISATT--------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (391)
Q Consensus       129 ~i~~~~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (391)
                      +++.+.+.++        .++..+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            8887766543        25678899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchh
Q 016350          201 KEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE  280 (391)
Q Consensus       201 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (391)
                      .+..+ |++.+++..+..++..+.....|++++    + + ++ +                              .++++
T Consensus       172 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~~-~------------------------------~~~~~  213 (399)
T PRK05122        172 YHWGG-LAGLGLLIMLLALLGLLLARPRPAVPP----V-K-GE-R------------------------------LPFRR  213 (399)
T ss_pred             HHccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC----C-C-cc-c------------------------------hhHHH
Confidence            88888 999988766655444333332333211    0 0 00 0                              00111


Q ss_pred             cccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 016350          281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (391)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (391)
                      .++  +.+.......+..+.......+.+.|..+ .+.  ...+.......++.+++.++.+++.||+++|+.+..+..+
T Consensus       214 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  288 (399)
T PRK05122        214 VLG--RVWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLV  288 (399)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            111  11111111112222222223344444432 121  2345566677888899999999999999999988888887


Q ss_pred             HHHHHHHHHHHh
Q 016350          361 MAVSMAIQVAAS  372 (391)
Q Consensus       361 ~~~~~~~~~~~~  372 (391)
                      ..++.+++...+
T Consensus       289 ~~~~~~~~~~~~  300 (399)
T PRK05122        289 EILGLLLLWLAP  300 (399)
T ss_pred             HHHHHHHHHHhc
Confidence            777777666544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.3e-28  Score=218.86  Aligned_cols=281  Identities=19%  Similarity=0.204  Sum_probs=230.5

Q ss_pred             HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh--hHHHHHHHHHHhhhcc
Q 016350           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGM  155 (391)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~  155 (391)
                      ..+++++.++.  +++.+.++.|+.+++++.|++.||+|.|+++..+.++.++++++...+.  +++.+++.|++||++.
T Consensus        65 ~~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   65 AGEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             CceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            34677776665  9999999999999999999999999999999999999999999998875  4457788999999999


Q ss_pred             chhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc-cchhHHHHHHHHHHHHHHHHHh-hccccchh
Q 016350          156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAM-VFCAESPH  233 (391)
Q Consensus       156 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~w~~~f~~~~~~~~~~~~~~-~~~~e~~~  233 (391)
                      |..+|....+.+.|.|++||++..++...+..+|.+++.+++|.+.+. .| |++.|++.+..+++..+++ ++..|+|.
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999988 67 9999999999999887777 44566664


Q ss_pred             HHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHH
Q 016350          234 WLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS  313 (391)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (391)
                      ..  +.-.+++.+.+++-.             ..+..++....+++++++++.+|..++..++..........+.|.|+.
T Consensus       222 ~h--~~is~~El~~I~~~k-------------~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~  286 (466)
T KOG2532|consen  222 KH--PNISEKELKYIEKGK-------------SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK  286 (466)
T ss_pred             cC--CCCCHHHHHHHHhcc-------------cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            21  111122222211110             001111125778999999999999999999999999999999999999


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCc---------hHHHHHHHHHHHHHHHHHHHHhccCC
Q 016350          314 SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR---------KALLQWSFFSMAVSMAIQVAASSSYI  376 (391)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (391)
                      ++++.+-.+.|+..++..+...+..+++|.++||..+         |-.-.++....+++++.+.+......
T Consensus       287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~  358 (466)
T KOG2532|consen  287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHR  358 (466)
T ss_pred             HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcc
Confidence            9999999999999999999999999999999999755         22334567777777777777766554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.96  E-value=2.2e-27  Score=215.49  Aligned_cols=283  Identities=15%  Similarity=0.152  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +.+++...+..++......+.+|.+++++|++..+.  |++.+.+.+++.+++++.|++.||+|||++++.+.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            556667778888888888999999999999988776  999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc------
Q 016350          133 SISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------  203 (391)
Q Consensus       133 ~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------  203 (391)
                      ++...   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.+++.+...      
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            88644   468999999999999999999999999999999999999999999999999999999998766422      


Q ss_pred             --------------------cchhHHHHHHHHHHHHHHHHHhhc--cccchhHHHHcCCHHHHHHHHHHHhCCCCchhHH
Q 016350          204 --------------------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL  261 (391)
Q Consensus       204 --------------------~~~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (391)
                                          .+ ||++|.+.+++.++..+...+  .||.++     ++ ++                  
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~-w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~------------------  217 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLAS-VQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK------------------  217 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc------------------
Confidence                                23 999998877766665444433  332110     00 00                  


Q ss_pred             HHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCC---hhHHHHHHHHHHHHHH
Q 016350          262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGS  338 (391)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  338 (391)
                               +.+...+.++++++|.++...+..+++........++++.|..+..  .+.+   ++........+..+|+
T Consensus       218 ---------~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~--~~~~~~~a~~~~~~~~~~~~vGR  286 (410)
T TIGR00885       218 ---------QISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI--PGMTAGFAANYNIGAMVIFFISR  286 (410)
T ss_pred             ---------cccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence                     0001112345677788887777777766666555555555554311  1222   2334445557788999


Q ss_pred             HHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhc
Q 016350          339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  373 (391)
Q Consensus       339 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (391)
                      ++++++.||+++|+.+.+......+.+++..+.+.
T Consensus       287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~  321 (410)
T TIGR00885       287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG  321 (410)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999888888777777777666443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=1.2e-27  Score=220.10  Aligned_cols=286  Identities=13%  Similarity=0.070  Sum_probs=206.7

Q ss_pred             hHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHH
Q 016350           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (391)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (391)
                      ++.+....+................|.+.+ +|.+.++.  +++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            444555556666666666666777787775 58887776  899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh----hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc-cc
Q 016350          130 IGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IA  204 (391)
Q Consensus       130 i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~  204 (391)
                      ++.++.++.    +++..+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+.+...+ ..
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence            998887764    4677888899999999999988888999999999999999999999999998888877665443 44


Q ss_pred             chhHHHHHHHHHHHHHHH-HHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccc
Q 016350          205 GWWRICFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY  283 (391)
Q Consensus       205 ~~w~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (391)
                      + ||+.|++.++..++.. +..+++||+|+....+  +.+..+      ++.. .. ..  .+.+.+.+.+....+.+++
T Consensus       183 ~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~  249 (438)
T TIGR00712       183 D-WHAALYFPAICAIIVALFAFAMMRDTPQSCGLP--PIEEYR------NDYP-DD-YN--EKAEQELTAKEIFMQYVLP  249 (438)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC--Cchhcc------cccc-cc-cc--cccccccchHHHHHHHHcc
Confidence            5 9999999887776654 4456677776431100  000000      0000 00 00  0000000000011124678


Q ss_pred             ccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCch
Q 016350          284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK  351 (391)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  351 (391)
                      ++.++...+..++.....+....+.|.|+.+..+.+...++....+..++++++.+++|++.||++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       250 NKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88888777666666655556666778888776666666678888888999999999999999999643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=3.5e-27  Score=221.96  Aligned_cols=288  Identities=21%  Similarity=0.194  Sum_probs=220.0

Q ss_pred             hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchh
Q 016350           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG  158 (391)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~  158 (391)
                      +.+..+....  .+..+++++|..+|++++|+++||+|||++++.++++..++.+..++++|++.+++.|+++|++.++.
T Consensus       111 ~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  111 NLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             ceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccch
Confidence            4444443333  78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHc
Q 016350          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK  238 (391)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~  238 (391)
                      ......+++|++++++|+.+..+ ......+..+++..++++..  + ||+.+++..++.++.++.+++.||+|+|+..+
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSK  264 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence            99999999999999999999999 66677777777777777776  4 99999999999888877777777999999999


Q ss_pred             CCHHHHHHHHHHHhCCC----CchhHHHHh---hhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHh
Q 016350          239 GRTAEAEAEFEKLLGGS----HVKSSLAEL---SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF  311 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (391)
                      ++.+++.+.+++..+.+    .........   +..+.....+...+.++++.++++...+...+..+.....++.+...
T Consensus       265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~  344 (521)
T KOG0255|consen  265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLN  344 (521)
T ss_pred             CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence            99999998888876432    111111111   11111122233557888888765544444433332222212212111


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhccCC
Q 016350          312 SSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (391)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (391)
                          ....+.+........+.....+....+...|+.|||.....+..+..++++...+......
T Consensus       345 ----~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (521)
T KOG0255|consen  345 ----VSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG  405 (521)
T ss_pred             ----hhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch
Confidence                1223444556666677788888888899999999999999999999999999988876654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=4.1e-27  Score=212.89  Aligned_cols=276  Identities=16%  Similarity=0.109  Sum_probs=202.8

Q ss_pred             HHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH-hhHHHHHHHHHH
Q 016350           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASIS  135 (391)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~  135 (391)
                      +..+...+......|.+|. +.+++|.+..+.  |++.+++.+...+.+++.|+++||+||||.++. +..+..++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            3466677777788888886 567899987776  999999999999999999999999999887654 666667778888


Q ss_pred             HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchH--HHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY--GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                      +++++++.+++.|+++|.+.+...|...++..|+.|+++|++.  .+....+.++|..+++.+++.+.+..+ ||+.|++
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~  160 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT  160 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence            9999999999999999988888888888889999887777654  577888889999999999999988888 9999999


Q ss_pred             HHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350          214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (391)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      .++..++..+.. +++||+|+...    +++                              ...+.++.+++++++....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------------------------~~~~~~~~~~~~~~~~~~~  206 (375)
T TIGR00899       161 AALAFVLCGVLVWLFLPSYPRGAP----GAL------------------------------TRLEVRGLLASRDTRLLFV  206 (375)
T ss_pred             HHHHHHHHHHHHHHhCCCcccCcc----ccc------------------------------CcchhhhhhcCcchHHHHH
Confidence            888766655544 45777653110    000                              0001223455666665555


Q ss_pred             HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 016350          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  370 (391)
                      ..++............+.|..+.++.+....+.......+...++.++.|++.||++||+.+.++.....+....+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  284 (375)
T TIGR00899       207 ACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA  284 (375)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            444444433333445666666655655555666666666677788899999999999999887776665555444443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=2.1e-28  Score=231.96  Aligned_cols=305  Identities=15%  Similarity=0.138  Sum_probs=228.1

Q ss_pred             HHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHH
Q 016350           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (391)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (391)
                      +.+++..+.........+..++.+.++|+++.++.  |++.+.+.++++++.++.+++.||+|||+++.++.++++++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            34444666667777888999999999999998887  9999999999999999999999999999999999999999999


Q ss_pred             HHHhhh---------------------------------------------------hHHHHHHHHHHhhhccchhhHHH
Q 016350          134 ISATTR---------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVA  162 (391)
Q Consensus       134 ~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~  162 (391)
                      ++++.+                                                   .+..++++|+++|+|.+..++..
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~  193 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG  193 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence            988763                                                   24567889999999999999999


Q ss_pred             HHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc---------------------chhHHHHHHHHHHHHHH
Q 016350          163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------------------GWWRICFWVSIVPAAIL  221 (391)
Q Consensus       163 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------------~~w~~~f~~~~~~~~~~  221 (391)
                      .+++.|++|+++|+++++++..+..+|..+|+++++.+.+..                     |.|+..|++.+++.++.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~  273 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT  273 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998876532                     12777888888777776


Q ss_pred             HHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHh
Q 016350          222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ  301 (391)
Q Consensus       222 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (391)
                      .+.++++|++.+....+.+.++.++.... .......      .+......+....+++++++|.++...+..++.....
T Consensus       274 ~v~l~~~p~~lp~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~  346 (633)
T TIGR00805       274 SIPFFFFPKALPKEGKRVNVDVHETEKLE-KSEDKSR------KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAF  346 (633)
T ss_pred             HHHHHhCccccCCcccccchhhhhhhccc-ccccccc------hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            66666677652210000000000000000 0000000      0000000111234667899999999888888888888


Q ss_pred             hhchhhHHHhHHHHHhhcCCChhHHHHHHHH-HHHHHHHHHHHHHhhhCc--hHHHHHHHHHHHHHHHH
Q 016350          302 LSGINAIFYFSSSVFKSAGLSSGLANVFVGI-ANLLGSVVAMVLMDKLGR--KALLQWSFFSMAVSMAI  367 (391)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~  367 (391)
                      .....++|.|++..++.+...++.......+ +.+++.+++|+++||++.  |+.+..+.++..++.++
T Consensus       347 ~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       347 NGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            8888899999998888887777877766665 567999999999999984  56666666666655443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00897 2A0118 polyol permease family

Probab=99.96  E-value=1.1e-26  Score=211.39  Aligned_cols=280  Identities=13%  Similarity=-0.005  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +....++.++.........+.++.+.+|+|.++++.  |++.+.+.+++.+++++.|++.||+|||+++..+.++.++++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~   92 (402)
T TIGR00897        15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH   92 (402)
T ss_pred             hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            334444545555554445556777889999988777  999999999999999999999999999999999999999887


Q ss_pred             HHHH---h-hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHH-HHHHHhccccccccchh
Q 016350          133 SISA---T-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWW  207 (391)
Q Consensus       133 ~~~~---~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~w  207 (391)
                      +++.   . .++++.+++.|+++|++.+...+.....+.+++|+++|++++|+.+.+.++|. .+++.+++.+.+..+ |
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~  171 (402)
T TIGR00897        93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-E  171 (402)
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-h
Confidence            7653   3 35788889999999999988888888889999999999999999999999996 689999988887777 5


Q ss_pred             HHHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccc
Q 016350          208 RICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH  286 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (391)
                      +..++......++..+ ..++.++.++..  +.++++.                          ..+....+++++++|.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------------------------~~~~~~~~~~~~~~~~  223 (402)
T TIGR00897       172 MNTLWSALAFVLTGGVIALFSNKDIFTPQ--HMQTREK--------------------------FSELGKAATILFTNPN  223 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCcc--cccCCcc--------------------------hhhHHHHHHHHHcChh
Confidence            5555443332222222 233334331100  0000000                          0000112445678888


Q ss_pred             hhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHH-HHHHHHHHH
Q 016350          287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-WSFFSMAVS  364 (391)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~  364 (391)
                      ++...+..++.....+....+.|.|..+ ++.+..+.+.......++..+++++.|+++||++||+... .+.....++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~  301 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence            8877666666555555555667766644 4555555666777788999999999999999999887654 333333443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=4.7e-27  Score=196.44  Aligned_cols=324  Identities=18%  Similarity=0.222  Sum_probs=245.1

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  125 (391)
                      .+.++........+...+.+.....+.+.|...+.+|++..+.  +++....+.|..+++..+|..+|++|||+.+....
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            4566777777778888877777777788899999999766555  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      ....+...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-+. ..+.+|.+....++..+....|
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g  228 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG  228 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999 778888889999999999888777 9999999999999988888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHH--------HHhhh-------cc-c
Q 016350          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL--------AELSK-------LD-R  269 (391)
Q Consensus       206 ~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-------~~-~  269 (391)
                       |||.......+..+.++..+++||+||+...+++++++.+.++++...+..+-..        .+.++       .+ .
T Consensus       229 -wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~  307 (528)
T KOG0253|consen  229 -WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS  307 (528)
T ss_pred             -HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence             9999998888888888899999999999999999999999988887655321110        00000       00 1


Q ss_pred             CCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhc--------------------CC--Chh-HH
Q 016350          270 GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--------------------GL--SSG-LA  326 (391)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~--~~~-~~  326 (391)
                      ..++...+..+++..+-.|..++....++...+. ++.........++..                    +.  ... .-
T Consensus       308 a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd  386 (528)
T KOG0253|consen  308 AAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD  386 (528)
T ss_pred             cccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence            1122334455555544333333322222222222 221222222211110                    00  011 24


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhccC
Q 016350          327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  375 (391)
Q Consensus       327 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (391)
                      ..+..+..+.|.++.++++||+|||+++...+++++++.+++.......
T Consensus       387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn  435 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN  435 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence            5667889999999999999999999999999999999988887765544

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=7.3e-27  Score=209.43  Aligned_cols=268  Identities=15%  Similarity=0.149  Sum_probs=203.0

Q ss_pred             hhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHH
Q 016350           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (391)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~  145 (391)
                      .....++.+|.+.+++|++.++.  +++.+++.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++++.++
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~   91 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLF   91 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence            33567899999999999988877  999999999999999999999999999999999999888888877 778999999


Q ss_pred             HHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHHHHHHHHH
Q 016350          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLA  224 (391)
Q Consensus       146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-w~~~f~~~~~~~~~~~~~  224 (391)
                      +.|++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+++.+.+..+. ||+.|.+.++..++... 
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-  169 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-  169 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-
Confidence            99999999999888888888899886 6899999999999999999999998888765533 99998776654433322 


Q ss_pred             hhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhc
Q 016350          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG  304 (391)
Q Consensus       225 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (391)
                       .++|+.++      ++++                          ++.......++++++|.++...+...+.....+..
T Consensus       170 -~~~~~~~~------~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (355)
T TIGR00896       170 -AWIPQVRR------RVAA--------------------------NQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSL  216 (355)
T ss_pred             -HHhhhhcc------ccCC--------------------------CCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHH
Confidence             23343311      0000                          00001123456677787776655555555555555


Q ss_pred             hhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHHHh
Q 016350          305 INAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      ..+.|.|..+ .+.+....+.......++.++++++.|++.||+ +||+.+.++..+.+++.+.+.+..
T Consensus       217 ~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
T TIGR00896       217 IGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP  284 (355)
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Confidence            5667777754 355555567788889999999999999999999 466666677777777766665544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=1.4e-26  Score=210.53  Aligned_cols=275  Identities=16%  Similarity=0.136  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      +..+.++.+.......+..|.+|. +.+|+|.+.++.  |++.+++.+++.++++++|+++||+|||++++.+.+...++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            444555566667777778888885 578999988877  99999999999999999999999999999999998887776


Q ss_pred             HHHHH---h-----hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc
Q 016350          132 ASISA---T-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       132 ~~~~~---~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (391)
                      .+...   .     .++++.++++|+++|++.+...+...+++.|++|+|+|++++++.+.+...|..++|.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~  174 (392)
T PRK12382         95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH  174 (392)
T ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            54332   1     368899999999999999998888889999999999999999999999999999999999988887


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccc
Q 016350          204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY  283 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (391)
                      .+ ||+.+.+..+..++........||.++.   ++++                                  .+.++.. 
T Consensus       175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------------~~~~~~~-  215 (392)
T PRK12382        175 FG-FAALALTTMVLPLLAWAFNGTVRKVPAH---AGER----------------------------------PSLWSVV-  215 (392)
T ss_pred             cC-hHHHHHHHHHHHHHHHHHHHhccCCCCC---cccC----------------------------------chHHHHH-
Confidence            78 9988776554433333222222332110   0000                                  0001111 


Q ss_pred             ccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 016350          284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (391)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (391)
                       +.++.......+..........+.+.|..+. +.  ...+.......++.+++.++.|++.||+++|+.+..+..+..+
T Consensus       216 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  291 (392)
T PRK12382        216 -GLIWKPGLGLALQGVGFAVIGTFVSLYFASK-GW--AMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETV  291 (392)
T ss_pred             -HHHHHhHHHHHHHHHHHhHHHHHHHHHHHhc-CC--chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHH
Confidence             0111111111112222222223344444331 11  1345556667778889999999999999999998888888887


Q ss_pred             HHHHHHHHh
Q 016350          364 SMAIQVAAS  372 (391)
Q Consensus       364 ~~~~~~~~~  372 (391)
                      +.+++.+.+
T Consensus       292 ~~~~~~~~~  300 (392)
T PRK12382        292 GLLLLWLAP  300 (392)
T ss_pred             HHHHHHHcc
Confidence            777665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.95  E-value=1.2e-26  Score=211.21  Aligned_cols=272  Identities=20%  Similarity=0.182  Sum_probs=193.6

Q ss_pred             HHhhhhhhcccchHHHhHhhhccCcchhHHHHHHH--HH---HHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH
Q 016350           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS--MC---LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (391)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s--~~---~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (391)
                      +.+.++...++...+.+.+++..+.++.+.+...+  .+   .++..+++++.|+++||+|||++++.+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            45677777778888888888654222222244333  23   33345789999999999999999999999999999999


Q ss_pred             HhhhhHH--------HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc------
Q 016350          136 ATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK------  201 (391)
Q Consensus       136 ~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------  201 (391)
                      ++++++.        .++++|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++..+.      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9998875        47889999999999999999999999999999999999999999999999988766543      


Q ss_pred             --cccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccch
Q 016350          202 --EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE  279 (391)
Q Consensus       202 --~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (391)
                        +..+ ||+.|++.++..++..+.....+|++++...+++                              ++....+.+
T Consensus       163 ~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~  211 (394)
T TIGR00883       163 ALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK------------------------------HKKKRGPIR  211 (394)
T ss_pred             Hhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc------------------------------cccccCCHH
Confidence              2345 9999988777666655555556666432111000                              001122334


Q ss_pred             hcccccc--hhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHH
Q 016350          280 ELLYGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (391)
Q Consensus       280 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  357 (391)
                      +.++++.  ++......++..........+.+.|..+.++.+....+.......++..++.++.|++.||++||+.+...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  291 (394)
T TIGR00883       212 ETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF  291 (394)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            4455444  44444444444444444445666676655555555667778888899999999999999999999877755


Q ss_pred             HHHHHH
Q 016350          358 FFSMAV  363 (391)
Q Consensus       358 ~~~~~~  363 (391)
                      ..+..+
T Consensus       292 ~~~~~~  297 (394)
T TIGR00883       292 TVLAAL  297 (394)
T ss_pred             HHHHHH
Confidence            444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=9.2e-27  Score=214.75  Aligned_cols=286  Identities=13%  Similarity=0.094  Sum_probs=201.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      +|..+..+.+...........++..+|.+.+++|.+.++.  +++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            4555555555544444445557788999999999988887  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHH-HHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchh
Q 016350          129 IIGASISATTRNLIGMLL-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (391)
                      ++++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-w  172 (455)
T TIGR00892        95 SLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-W  172 (455)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-h
Confidence            999999999999998875 5799999999877777788899995 789999999999999999999999999888888 9


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccch
Q 016350          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (391)
                      |+.|++.+++.++..+..++..+.++... +.+.++ .+   .........+    .......++..+....+++++|.+
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  243 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKS-KE---GLPPDGSTKK----LSKKSTAEKINRFLDFSLFTHRGF  243 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccc-cccccc-cc---cCCCCCcccc----ccccchhhhhhhhcchHHhcCchH
Confidence            99999988777665544433322211000 000000 00   0000000000    000000000001111246788888


Q ss_pred             hHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 016350          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL  348 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  348 (391)
                      +......++.....+....+++.|..+ .+.+....+......+++.++++++.+++.||.
T Consensus       244 ~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       244 LVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            877776666666655555666777654 455555677788888899999999999999973

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=7.1e-26  Score=207.15  Aligned_cols=287  Identities=19%  Similarity=0.151  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchh---HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL---AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      ....++++.+...+......+.+|.+.+++|.+..+.   ..|++.+++.++..+++++.|+++||+|||+++..+.+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   94 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM   94 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence            3445566677778888888999999999999886543   2478899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      +++.++++++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..++|.+++.+.+..+ ||
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~  172 (408)
T PRK09874         95 GIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LR  172 (408)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HH
Confidence            9999999999999999999999999765 456777889999999999999999999999999999999999888777 99


Q ss_pred             HHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccch
Q 016350          209 ICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (391)
Q Consensus       209 ~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (391)
                      +.|++.++..++..+.. ++.+|+++.    .++++..+ .                           .+..+.++++.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~---------------------------~~~~~~~~~~~~  220 (408)
T PRK09874        173 PVFFITASVLFLCFLVTLFCIRENFQP----VSKKEMLH-M---------------------------REVVTSLKNPKL  220 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccc----ccchhhhH-H---------------------------HHHHHhCcCCch
Confidence            99998877766654444 445554311    00000000 0                           001122344544


Q ss_pred             hHHHH-HHHHHHHHhhhchhhHHHhHHHHHhhcCC---ChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 016350          288 RVVFI-GSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (391)
Q Consensus       288 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (391)
                      +.... ................+.|..+..+....   ..+......+++..++.+..|++.||++||+.+..+.....+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  300 (408)
T PRK09874        221 VLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVL  300 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence            43222 22222222222233445555443222111   123445556778888899999999999999998888777776


Q ss_pred             HHHHHHHHh
Q 016350          364 SMAIQVAAS  372 (391)
Q Consensus       364 ~~~~~~~~~  372 (391)
                      +.+...+..
T Consensus       301 ~~~~~~~~~  309 (408)
T PRK09874        301 LLIPMSFVQ  309 (408)
T ss_pred             HHHHHHHhc
Confidence            666555443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=1.7e-32  Score=254.04  Aligned_cols=313  Identities=34%  Similarity=0.601  Sum_probs=239.9

Q ss_pred             HHHHHHhhhhhhcccchHHHhH--hhhccCcc-------hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHH
Q 016350           57 TLSSFLFGYHLGVVNEPLESIS--LDLGFNGN-------TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (391)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~-------~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  127 (391)
                      .++.+..+++...++...+...  .++..+.+       +...+++.+...+|..+|+++.|+++||+|||+.+..+.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            4455778888877766665444  22222221       22347899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh---hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc
Q 016350          128 MIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (391)
Q Consensus       128 ~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (391)
                      ..+++++.++++   |++.++++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+....
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   99999999999999999999999999999999999999999999999999999888876653322


Q ss_pred             c--hhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcc
Q 016350          205 G--WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (391)
Q Consensus       205 ~--~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (391)
                      +  .||..+.+..++.++..+..+++||+|+|+..+++.+|+++.+++..+.+..+++.++..+..++.++...++++++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence            1  39999999999988888888899999999999999999988888865554443333333332222222236678888


Q ss_pred             cccc-hhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChh-HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 016350          283 YGRH-FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (391)
Q Consensus       283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (391)
                      +++. .+.......+..............|.+...+..+.+.. .......+...++.+++.++.||+|||++++.+...
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~  325 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLL  325 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8765 34444444444445455555566666666665555444 344556677778888888999999999999998888


Q ss_pred             HHHHHHHHH
Q 016350          361 MAVSMAIQV  369 (391)
Q Consensus       361 ~~~~~~~~~  369 (391)
                      ++++.+.+.
T Consensus       326 ~~~~~~~~~  334 (451)
T PF00083_consen  326 MAICSLILG  334 (451)
T ss_pred             ccccccccc
Confidence            887777664

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.95  E-value=5.2e-27  Score=214.90  Aligned_cols=280  Identities=17%  Similarity=0.108  Sum_probs=210.2

Q ss_pred             HHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh-
Q 016350           59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-  137 (391)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-  137 (391)
                      ..++..+......+.+|.+.++++.+..+.  |++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+. 
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~  102 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN  102 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence            345555566677788999999988766555  99999999999999999999999999999999988887777665542 


Q ss_pred             ----hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350          138 ----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       138 ----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                          .++++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..+|+.+++.+.+..+ |++.|++
T Consensus       103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~  181 (417)
T PRK10489        103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGL  181 (417)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHH
Confidence                56788999999999999888888889999999999999999999999999999999999999888777 8999998


Q ss_pred             HHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHH
Q 016350          214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (391)
Q Consensus       214 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
                      .++..++..+..+.+||+++..  +++ ++..+.                          ....++.++++|.++...+.
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~--~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~  232 (417)
T PRK10489        182 AAAGTFITLLPLLRLPALPPPP--QPR-EHPLRS--------------------------LLAGFRFLLASPVVGGIALL  232 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCC--ccc-ccchHH--------------------------HHHHHHHHHcChHHHHHHHH
Confidence            8777776666666677654211  000 000000                          00112334566666555444


Q ss_pred             HHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      .++... ......+.+.|..+.++.+....+.......++.+++.++.+++.||.++++.+..+....+++.+++.+.
T Consensus       233 ~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  309 (417)
T PRK10489        233 GGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM  309 (417)
T ss_pred             HHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc
Confidence            433322 22334566777776666666667788888899999999999999999877777777777777776655543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=6.4e-26  Score=203.08  Aligned_cols=261  Identities=28%  Similarity=0.429  Sum_probs=219.6

Q ss_pred             HHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (391)
                      .+.+..+....+.....+..|.+.+++|.+.++.  +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            4455667778888888999999999999887766  89999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHH
Q 016350          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (391)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~  214 (391)
                      ..++++++.+++.|++.|++.+...+....++.|++|+|+|++.+++......+|..+++.+++.+.+..+ ||+.|++.
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  159 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL  159 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888 99999998


Q ss_pred             HHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHH
Q 016350          215 IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS  294 (391)
Q Consensus       215 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (391)
                      ++..++..+...+++                                                       |.++...+..
T Consensus       160 ~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~  184 (352)
T cd06174         160 AILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAF  184 (352)
T ss_pred             HHHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHH
Confidence            877776655554332                                                       2234444444


Q ss_pred             HHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchH-HHHHHHHHHHHHHHHHHHHhc
Q 016350          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA-LLQWSFFSMAVSMAIQVAASS  373 (391)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~  373 (391)
                      ++..........+.+.+..+..+.+..+.+.......++..++.++.+++.||++||+ .+..+..+..++.+.+....+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            4555444444555666665544555556677888899999999999999999999999 888888888888887776554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.94  E-value=1.5e-24  Score=199.09  Aligned_cols=325  Identities=21%  Similarity=0.226  Sum_probs=214.7

Q ss_pred             HHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHH
Q 016350           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (391)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  136 (391)
                      ++......+.....+..++.+..|+|-++..   +|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|+++++
T Consensus        50 ~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a  126 (599)
T PF06609_consen   50 SLAVIAAYFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA  126 (599)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence            3333334455555667789999999976544   5999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHH
Q 016350          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (391)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~  216 (391)
                      .++|...++++-.+.|+|.|.... ....++|..|.|.|+...++...........++.++..+....+ |||.|++.++
T Consensus       127 tA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i  204 (599)
T PF06609_consen  127 TAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFII  204 (599)
T ss_pred             cCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHH
Confidence            999999999999999999888774 45568999999999888877776665656667777766665556 9999999877


Q ss_pred             HHHHHHHHh--hccccchhHHHHcCC---HHHHHHHHHHHh------------------CC-C----CchhH--------
Q 016350          217 PAAILCLAM--VFCAESPHWLYKKGR---TAEAEAEFEKLL------------------GG-S----HVKSS--------  260 (391)
Q Consensus       217 ~~~~~~~~~--~~~~e~~~~~~~~~~---~~~~~~~~~~~~------------------~~-~----~~~~~--------  260 (391)
                      ...+.++..  ++.|++  +...+++   ..+..+++|.+.                  +. .    .....        
T Consensus       205 ~~~i~~vl~~~fY~PP~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~  282 (599)
T PF06609_consen  205 WSGIALVLIFFFYFPPP--RAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV  282 (599)
T ss_pred             HHHHHHHHHHHHhCCCc--hhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH
Confidence            766654443  233333  2222221   233334444321                  00 0    00000        


Q ss_pred             -HHHhhhcccC-CCCccccchhcccc-cchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCC---ChhHHHHHHHHHH
Q 016350          261 -LAELSKLDRG-DDGDIVKFEELLYG-RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIAN  334 (391)
Q Consensus       261 -~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  334 (391)
                       +..+.-.|.. ....+.-..+++++ |.+...++..++..+.++......|......++.+..   ..+....+.+++.
T Consensus       283 ~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~  362 (599)
T PF06609_consen  283 LLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGS  362 (599)
T ss_pred             HHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHH
Confidence             0001112221 12234455667776 4555555555566555555445555555555554442   3567778888888


Q ss_pred             HHHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHhhhhc
Q 016350          335 LLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (391)
Q Consensus       335 ~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  389 (391)
                      ..+.++.|.+..+++| |+.++++.+++.+++..++....+.. .....+..+.|+
T Consensus       363 ~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~-~~~i~~~~l~g~  417 (599)
T PF06609_consen  363 CAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNK-NAAIAFLVLAGF  417 (599)
T ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCc-chHHHHHHHHHH
Confidence            8999999999999887 44556777777766666665544332 223344444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=1.9e-25  Score=202.53  Aligned_cols=279  Identities=11%  Similarity=0.063  Sum_probs=208.1

Q ss_pred             HHHHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (391)
                      .+....++.........+.+|. +.+++|++..+.  |++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            4445566666677776777664 567899988777  9999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                      +.+++++++.++++|++.|.+.+...+....+..|.+|+++|+++.++.....++|..++|.+++.+.+ .+ |+..|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~  166 (395)
T PRK10054         89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWL  166 (395)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHH
Confidence            999999999999999999988787788888999999999999999999999999999999999998875 46 9999998


Q ss_pred             HHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350          214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (391)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      .++..++..+.. +++||+++    ++++++ .                            +..+.++.+++|.++...+
T Consensus       167 ~~~~~~i~~i~~~~~~~~~~~----~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~  213 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRSEK----AIATET-G----------------------------SVWSPSVLLQDKALLWFTC  213 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcccc----ccccch-h----------------------------hhhhhhhhccCceehHHHH
Confidence            777766654433 44555421    000000 0                            0011245677888877766


Q ss_pred             HHHHHHHHhhhchhhHHHhHHHHHhhcCC---ChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 016350          293 GSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  369 (391)
                      ..++..+.......+.+.|.+...+ .+.   ..+.......+......+..+++.||.++|+.+..+..+..++...+.
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~  292 (395)
T PRK10054        214 SGFLASFVSGAFASCISQYVMVVAD-SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI  292 (395)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHhcc-cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence            6666555544444456666654422 222   223455555555666678889999999999998888877777776665


Q ss_pred             HH
Q 016350          370 AA  371 (391)
Q Consensus       370 ~~  371 (391)
                      +.
T Consensus       293 ~~  294 (395)
T PRK10054        293 FS  294 (395)
T ss_pred             Hc
Confidence            43

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.3e-27  Score=199.69  Aligned_cols=257  Identities=16%  Similarity=0.086  Sum_probs=203.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHH
Q 016350           85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL  164 (391)
Q Consensus        85 ~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  164 (391)
                      .++.++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++.+...+++.++.++|++++++|.+||+|.+...+...+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            34556699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCcc-ccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHH
Q 016350          165 YVTEVSPPF-VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAE  243 (391)
Q Consensus       165 ~i~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  243 (391)
                      +++|.||++ +|++++|+...+.++|.++||.+||.+.+..| .+..|.+.++++++-..+.+++-|..     +.++  
T Consensus       183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~-----~~~~--  254 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPT-----EMDP--  254 (464)
T ss_pred             HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCcc-----ccCc--
Confidence            999999965 57999999999999999999999999999999 89999999999988877776654431     1110  


Q ss_pred             HHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCCh
Q 016350          244 AEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS  323 (391)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (391)
                                                +...+..++.+++++|..+...................++.+..+.+...+...
T Consensus       255 --------------------------~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~  308 (464)
T KOG3764|consen  255 --------------------------DSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEV  308 (464)
T ss_pred             --------------------------cccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcce
Confidence                                      112223456677888887766554444444444445566777777666556678


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCchHHH--HHHHHHHHHHHHHHHHHhccC
Q 016350          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALL--QWSFFSMAVSMAIQVAASSSY  375 (391)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  375 (391)
                      |+.+.+..+...++..+.|.+.||+++.+++  ..+.+.....+....+.+...
T Consensus       309 G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~  362 (464)
T KOG3764|consen  309 GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA  362 (464)
T ss_pred             eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH
Confidence            8899999999999999999999999943333  334444444444444444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.94  E-value=5e-25  Score=199.23  Aligned_cols=281  Identities=11%  Similarity=0.014  Sum_probs=213.1

Q ss_pred             HHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH----HHhhHHHHHH
Q 016350           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF----QLCALPMIIG  131 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~i~  131 (391)
                      +.+..+..........|.+|.+.+++|.+.+++  |++.+++.+...++++++|+++||+|||+..    ..+..+..+ 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            555667777777888999999999999988777  9999999999999999999999999985433    222222222 


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Q 016350          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (391)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  211 (391)
                       ..+..+++++.+++.|+++|.+.+...|...++..|+  +++|++..|....+.++|.+++|++++.+.+..| ||..|
T Consensus        86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f  161 (382)
T TIGR00902        86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNIL  161 (382)
T ss_pred             -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHH
Confidence             2445678999999999999999888888888887665  4779999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHH
Q 016350          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (391)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (391)
                      .+.....++..+ .+..+|+++.   +++.++                          ++.....+.++++|+|+++...
T Consensus       162 ~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~l  211 (382)
T TIGR00902       162 AILTAGLAFMLI-GFLIKPTIPP---KDAIPE--------------------------DESQGDSAFIALLKNPMNLRFL  211 (382)
T ss_pred             HHHHHHHHHHHH-HHHcCCCCCC---Cccccc--------------------------cccccchhHHHHHcChHHHHHH
Confidence            886554333333 3333443210   000000                          0001122356788899998888


Q ss_pred             HHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      +..++..........+.+.|.++ .+.+....+.......++.+++.++.+++.||+++|+.+.++.+...+...++.+.
T Consensus       212 ~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       212 AAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence            87777777776767777777765 56666667778888888999999999999999999999999999999988887765


Q ss_pred             hcc
Q 016350          372 SSS  374 (391)
Q Consensus       372 ~~~  374 (391)
                      ++.
T Consensus       291 ~~~  293 (382)
T TIGR00902       291 EAF  293 (382)
T ss_pred             hhH
Confidence            543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=1e-24  Score=198.04  Aligned_cols=279  Identities=13%  Similarity=0.056  Sum_probs=199.3

Q ss_pred             HHHHHHHhhhhhhcccchHH-HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHH
Q 016350           56 ATLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (391)
                      +....++.........|.++ .+.+++|++..+.  |++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~   92 (400)
T PRK11646         15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT   92 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            33455555555556566665 4678899987776  99999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHH
Q 016350          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (391)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~  214 (391)
                      +.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. ..+ ||+.|++.
T Consensus        93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~  170 (400)
T PRK11646         93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATG  170 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHH
Confidence            9999999999999999999998888888999999999999999999999999999999999999988 556 99999988


Q ss_pred             HHHHHHHHHH-hhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHH
Q 016350          215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (391)
Q Consensus       215 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
                      ++..++..+. .++.||.+.    +.+.++                              ...++++++++|.++.....
T Consensus       171 ~~~~~~~~i~~~~~~~~~~~----~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~  216 (400)
T PRK11646        171 AVLFVLAAAFNAWLLPAYKL----STVRTP------------------------------VREGMTRVLRDKRFVTYVLT  216 (400)
T ss_pred             HHHHHHHHHHHHHhCCcccc----cccchh------------------------------hHHHHHHHHcCchHHHHHHH
Confidence            7766655433 344454210    000000                              01123455666776654443


Q ss_pred             HHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      .+...........+.|.|..+..+ .+...+.......++...+....+++.| |.+.++.+..+..+.+++.+++...+
T Consensus       217 ~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  295 (400)
T PRK11646        217 LTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS  295 (400)
T ss_pred             HHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence            333332222223455666655433 3344566666666666555545555554 56656666677777777766665544


Q ss_pred             c
Q 016350          373 S  373 (391)
Q Consensus       373 ~  373 (391)
                      +
T Consensus       296 ~  296 (400)
T PRK11646        296 N  296 (400)
T ss_pred             h
Confidence            3

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.94  E-value=1.9e-24  Score=200.80  Aligned_cols=281  Identities=16%  Similarity=0.155  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhHH-HHHhhH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCAL  126 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~  126 (391)
                      ...+.+..+..+......++.+|.+.++.|.+.+++  |.+ +.....+ ++.+++|+++||+     |||+. ++.+.+
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            344555566667777788889999999999887776  664 3444444 6899999999999     99985 667777


Q ss_pred             HHHHHHHHHHhh---hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc-
Q 016350          127 PMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-  202 (391)
Q Consensus       127 ~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-  202 (391)
                      ..+++...+++.   ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ 
T Consensus        90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~  169 (491)
T PRK11010         90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR  169 (491)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777777777775   4788899999999999999999999999999999999999999999999999999999998888 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcc
Q 016350          203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (391)
Q Consensus       203 ~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (391)
                      ..| ||..|++.++..++..+..++.||+++..   +++++..                          +....++++++
T Consensus       170 ~~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~~--------------------------~~~~~~l~~~~  219 (491)
T PRK11010        170 YLG-WQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTLE--------------------------QAVVAPLRDFF  219 (491)
T ss_pred             ccC-HHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccchh--------------------------hhHHHHHHHHH
Confidence            456 99999998877777666656677764210   0000000                          00011244556


Q ss_pred             cccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHH-HHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH
Q 016350          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN-VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (391)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  361 (391)
                      +++..+......++..........+.+.|+.+.++.+..+.+... ....++.+++.+++|+++||+++|+.+.++.++.
T Consensus       220 ~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~  299 (491)
T PRK11010        220 GRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ  299 (491)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            666666555554444444444445566666554555555566665 3455788999999999999999988777666555


Q ss_pred             HHHHHH
Q 016350          362 AVSMAI  367 (391)
Q Consensus       362 ~~~~~~  367 (391)
                      ++..+.
T Consensus       300 ~l~~l~  305 (491)
T PRK11010        300 GVSNAG  305 (491)
T ss_pred             HHHHHH
Confidence            554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.93  E-value=1.3e-24  Score=196.58  Aligned_cols=275  Identities=12%  Similarity=0.071  Sum_probs=201.6

Q ss_pred             HHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhh----HHHHHhhHHHHHHHHHH
Q 016350           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCALPMIIGASIS  135 (391)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~i~~~~~  135 (391)
                      .+..........|.+|.+.+|+|.+.++.  |++.+++.++..++++++|+++||+|||    +.+.++..+.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence            45555666788899999999999988777  9999999999999999999999999984    3333222221  22334


Q ss_pred             HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHH
Q 016350          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (391)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~  215 (391)
                      ..+++++.+++.|++.|++.+...+...+++.++  +++|+++.+.......+|..+||++++.+.++.+ ||..|++.+
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~  165 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT  165 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence            4568899999999999999888888888887776  4568889999999999999999999999999888 999998877


Q ss_pred             HHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHH
Q 016350          216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (391)
Q Consensus       216 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (391)
                      +..++..+..++.||+++    ++++++                          ..++...++++++++|.++...+..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~----~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~  215 (382)
T PRK11128        166 AGVASMLLGQLLRPTIMP----QGESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVS  215 (382)
T ss_pred             HHHHHHHHHHHccCCCCC----cccccc--------------------------ccccccchHHHHHcChhHHHHHHHHH
Confidence            654444443344444311    000000                          00011235678888998887777666


Q ss_pred             HHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      +............+.|..+ .+.+....+.......++.++..++.+++.||+++|+.+..+....+++.+++...+
T Consensus       216 l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~  291 (382)
T PRK11128        216 LLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT  291 (382)
T ss_pred             HHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6655554445556666644 444444567777777788888999999999999999998888888888777665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.93  E-value=9.5e-25  Score=224.43  Aligned_cols=279  Identities=11%  Similarity=-0.013  Sum_probs=204.8

Q ss_pred             ccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH---HhhhhHHHHHH
Q 016350           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATTRNLIGMLL  146 (391)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~  146 (391)
                      ...+.+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++.   ..+++++.+++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (1146)
T PRK08633         29 KILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFA  108 (1146)
T ss_pred             HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            344556666777777666556899999999999999999999999999999999887766555544   34578999999


Q ss_pred             HHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc--------cchhHHHHHHHHH-H
Q 016350          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--------AGWWRICFWVSIV-P  217 (391)
Q Consensus       147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~w~~~f~~~~~-~  217 (391)
                      +|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++++.+.        .++|++.+.+..+ .
T Consensus       109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (1146)
T PRK08633        109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAV  188 (1146)
T ss_pred             HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988765        2334554444333 3


Q ss_pred             HHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHH
Q 016350          218 AAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLF  297 (391)
Q Consensus       218 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (391)
                      .++.++..+.+||.|+....+.+.++ ..                       ........++.+++++.++...+..++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~  244 (1146)
T PRK08633        189 AVLGLIFAYRLPKVPAAAPEVFDKKK-YL-----------------------FPKLLWRNLKLLRSDRVLWLAIIGLSYF  244 (1146)
T ss_pred             HHHHHHHHhcCcCCCCCCcccccccc-cc-----------------------cHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            33344445566776532111000000 00                       0000011244566778777766666666


Q ss_pred             HHHhhhchhhHHHhHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          298 ALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      .+.......+++.|....++.+.. ..+++.....++.+++.++.+++.||+++++.+.++.++.+++.+++.+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  320 (1146)
T PRK08633        245 WFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP  320 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence            555555566777777777776666 677888888999999999999999999998888888777777776666544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.93  E-value=1.6e-23  Score=190.24  Aligned_cols=275  Identities=13%  Similarity=0.114  Sum_probs=182.8

Q ss_pred             HHHHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHH-HHHHHHHHHHHhhhcchhhHHH-HHhhHHHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAF-QLCALPMIIG  131 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~i~  131 (391)
                      ...+..++.........|.+|. +.+++|++.++.  |++.+...+ ++.++.+.+++ .||+||||.+ +.+.+..+++
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~   95 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLA   95 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHH
Confidence            4444567777777777787775 578899988877  888776554 55566655666 9999999875 4566666788


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccc--hHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRG--TYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (391)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  209 (391)
                      ..+.+++++++.+++.+.+.|...+...+....++.|+.++++|.  ...++.+.+.++|.+++|.+++.+.+..| ||.
T Consensus        96 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~  174 (393)
T PRK15011         96 CTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTV  174 (393)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHH
Confidence            888889999998876655555445567788888888887766553  44578888999999999999999988888 999


Q ss_pred             HHHHHHHHHHHHHHH-hhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchh
Q 016350          210 CFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (391)
Q Consensus       210 ~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (391)
                      .|++.++..++..+. .+++||+++.    .+ ++ .+.                     .  +    ..++  +.+..+
T Consensus       175 ~f~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~-~~~---------------------~--~----~~~~--~~~~~~  219 (393)
T PRK15011        175 MYLSAAVAFIVCGVMVWLFLPSMRKE----LP-LA-TGT---------------------L--E----APRR--NRRDTL  219 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCccCCC----Cc-cc-ccc---------------------c--c----cccc--ccccHH
Confidence            999888776665544 4557776421    00 00 000                     0  0    0000  012222


Q ss_pred             HHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 016350          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (391)
                      ..................+.+.|..+.++.+....+.......++.+++.++.|+++||++||+.+..+.....+.+..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~  299 (393)
T PRK15011        220 LLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM  299 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            22222333333333333456667766666555556666666667788899999999999999988776655555444333

>TIGR00901 2A0125 AmpG-related permease

Probab=99.93  E-value=3.8e-24  Score=191.99  Aligned_cols=270  Identities=14%  Similarity=0.076  Sum_probs=192.2

Q ss_pred             hcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhHH-HHHhhHHHHHHHHHHHhh---
Q 016350           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCALPMIIGASISATT---  138 (391)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---  138 (391)
                      ...++.+|.+.+|+|++.++.  |+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++.....++.   
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            456778999999999998877  787655 455554 89999999998     89987 466777787777777777   


Q ss_pred             hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch-------hHHHH
Q 016350          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICF  211 (391)
Q Consensus       139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------w~~~f  211 (391)
                      .+.+.+.+..++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+.       ||..|
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF  160 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence            45666777788888888888899999999999999999999999999999999999999888766552       99999


Q ss_pred             HHHHHHHHHHHHHhhc-cccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccc---h
Q 016350          212 WVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH---F  287 (391)
Q Consensus       212 ~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  287 (391)
                      ++.++..++..+..++ .+|+++.   ++++++..+.                          ....+++++++|.   +
T Consensus       161 ~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~  211 (356)
T TIGR00901       161 FWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA--------------------------VLKPIREFFQRKNMIQA  211 (356)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH--------------------------HHHHHHHHHHhcCchHH
Confidence            9988877766555443 4554211   0000000000                          0112344555554   4


Q ss_pred             hHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHH-HHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 016350          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  366 (391)
                      +...+..++..........+.+.|..+ ++.+..+.+......+ ++.+++.++++++.||+|+|+.+..+.++.+++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~  290 (356)
T TIGR00901       212 LLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNA  290 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            444444444455545555667777765 4444444455555444 56789999999999999999998888887777766


Q ss_pred             HHHHH
Q 016350          367 IQVAA  371 (391)
Q Consensus       367 ~~~~~  371 (391)
                      ++.+.
T Consensus       291 ~~~~~  295 (356)
T TIGR00901       291 GFVWL  295 (356)
T ss_pred             HHHHH
Confidence            55543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.8e-23  Score=178.39  Aligned_cols=289  Identities=15%  Similarity=0.180  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i  130 (391)
                      ..++.+....++.++......+.+|.+++.|+++..+.  +++...++.++.+.+++.|++.+|+|+|+-++.|+.++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av   90 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV   90 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34556666677888888899999999999999998888  8999999999999999999999999999999999999999


Q ss_pred             HHHHHH---hhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc----
Q 016350          131 GASISA---TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI----  203 (391)
Q Consensus       131 ~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----  203 (391)
                      ++.+..   ...+|..++++-++.|.|.+...++.+.+++...++++....+++.+..+++|.+++|++++.+...    
T Consensus        91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~  170 (422)
T COG0738          91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL  170 (422)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence            999984   6678999999999999999999999999999999998889999999999999999999999988762    


Q ss_pred             --------------cchhHHHHHHHHHHHHHHHHHhhc--cccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhc
Q 016350          204 --------------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL  267 (391)
Q Consensus       204 --------------~~~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (391)
                                    ...||.+|...+...+++.+....  .|+.+.     ..+                          
T Consensus       171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----~~~--------------------------  219 (422)
T COG0738         171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----AAP--------------------------  219 (422)
T ss_pred             ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----ccc--------------------------
Confidence                          112778888777666666555543  333211     000                          


Q ss_pred             ccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 016350          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK  347 (391)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  347 (391)
                       +..+.......+++++|+++...+..+++........++++.|+.+..+.+..++....+....+.++|++++.++..|
T Consensus       220 -~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~  298 (422)
T COG0738         220 -SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR  298 (422)
T ss_pred             -cccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0001111146778899999999999999999998888888888887755566667788888999999999999999999


Q ss_pred             hCchHHHHHHHHHHHHHHHHHHHHhc
Q 016350          348 LGRKALLQWSFFSMAVSMAIQVAASS  373 (391)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (391)
                      +...+.+.+......+-++...+..+
T Consensus       299 ~~~~k~Laf~a~~~ill~~~~~l~~g  324 (422)
T COG0738         299 IKPEKYLAFYALIAILLLLAVALIGG  324 (422)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99888887777666666665555555

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.2e-25  Score=192.08  Aligned_cols=321  Identities=19%  Similarity=0.270  Sum_probs=218.5

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhcc-C------cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-N------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR  118 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~------~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr  118 (391)
                      .++..+.+.+...+.+.+.++...++.+.|.+...+.- +      ++.+ .+.+..+-.+|..+|+++.|++.||+|||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i-~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGV-LALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            45557778888999999999999999999988776522 2      1222 27889999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHhhh-------hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHH
Q 016350          119 RAFQLCALPMIIGASISATTR-------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM  191 (391)
Q Consensus       119 ~~l~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  191 (391)
                      +++...++++.+++++++++.       -..++...|++.|+|.|+-+|...++.+|...++.||...+.+-+..+.|.+
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            999999999999999887752       2568888999999999999999999999999999999988887766666666


Q ss_pred             HHHHhccccc----ccc----------chhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCH-HHHHHHHHHHhCCCC
Q 016350          192 GSLLIGIPVK----EIA----------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRT-AEAEAEFEKLLGGSH  256 (391)
Q Consensus       192 ~~~~~~~~l~----~~~----------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~  256 (391)
                      .|.+++-.+.    ...          +-||..|.+..++.++.....+..||++++.....++ +.+.   ++..+...
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~  271 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLS  271 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccc
Confidence            5555543322    111          2399999999999999888889999998876332222 2211   11111111


Q ss_pred             chhHHHHhhhcccCCCCccc---cchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCCh---hH-----
Q 016350          257 VKSSLAELSKLDRGDDGDIV---KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GL-----  325 (391)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----  325 (391)
                      .  ...+....+...+.+..   .+...+..+.. ...+.....++..-...+....+...+++..+...   .+     
T Consensus       272 ~--~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~  348 (538)
T KOG0252|consen  272 V--DIEAESTAESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFK  348 (538)
T ss_pred             c--ccchhhccccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHH
Confidence            1  01111111111111111   12223333322 33344444444444445556666666666333221   11     


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhc
Q 016350          326 ----ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  373 (391)
Q Consensus       326 ----~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (391)
                          ...+...+.++|..+..+++|++||++..+.+++++.+..+.+....+
T Consensus       349 vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~  400 (538)
T KOG0252|consen  349 VAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN  400 (538)
T ss_pred             HHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc
Confidence                122333444457777888999999999999999999999998887665

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.92  E-value=1e-23  Score=186.11  Aligned_cols=165  Identities=14%  Similarity=0.079  Sum_probs=142.6

Q ss_pred             hhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHH
Q 016350           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (391)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~  145 (391)
                      .+...+...|.+.+|+|++.++. .|.+.++++.+++++.++.|+++||+|.|+++..+.+.+++.+++.++++++..+.
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv-~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~  119 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETV-TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQ  119 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455678899999999998882 29999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHH---HHHHHHHH
Q 016350          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS---IVPAAILC  222 (391)
Q Consensus       146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~---~~~~~~~~  222 (391)
                      +.|++.|++.|+.. +...++..|+|+++|+++.++...+..+|.++++++++.+ ...+ ||+.+.+.   .....+.+
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~g-Wr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG-WISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-chhHHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999999999999999999999999999999984 4556 88766543   33333344


Q ss_pred             HHhhccccchhH
Q 016350          223 LAMVFCAESPHW  234 (391)
Q Consensus       223 ~~~~~~~e~~~~  234 (391)
                      +..+++|..++.
T Consensus       197 ~~a~~LP~~~~s  208 (511)
T TIGR00806       197 FLALFLKRPKRS  208 (511)
T ss_pred             HHHHhCCCCchh
Confidence            455778865543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.92  E-value=3.4e-23  Score=188.71  Aligned_cols=277  Identities=18%  Similarity=0.117  Sum_probs=199.6

Q ss_pred             HHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhH-HHHHhhHHHHHH
Q 016350           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRR-AFQLCALPMIIG  131 (391)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~i~  131 (391)
                      ..++..+.........+|.+.++.|.+.+++  |++..+...  .+..+++|+++||+     |||| .++.+.++.+++
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            3456667777778889999999999998887  888766665  58999999999999     8875 788888888888


Q ss_pred             HHHHHhh---hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc-cchh
Q 016350          132 ASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWW  207 (391)
Q Consensus       132 ~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~w  207 (391)
                      ..+.++.   ++++.+++..++.++..+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+.+. .+ |
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w  160 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-W  160 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-H
Confidence            8887776   35777888888888888888899999999999999999999999999999999999998888875 36 9


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccch
Q 016350          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (391)
                      |..|++.++..++..+..++.||+++.   ++++++..+                          +...++++++++|.+
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~--------------------------~~~~~~~~l~~~~~~  211 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGE--------------------------AVVGPLRDFFSRRGA  211 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchhHH--------------------------HHHHHHHHHHhCcCH
Confidence            999999887776665555667765431   100000000                          011235567788888


Q ss_pred             hHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHH-HHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 016350          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  366 (391)
                      +...+..++............+.+..+.++.+..+.+......+ ++.+++.++++++.||+++|+.+..+.....+..+
T Consensus       212 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l  291 (402)
T PRK11902        212 WALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL  291 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            87666555544433322233334444434433333455544433 45789999999999999999887776666555544


Q ss_pred             HH
Q 016350          367 IQ  368 (391)
Q Consensus       367 ~~  368 (391)
                      .+
T Consensus       292 ~~  293 (402)
T PRK11902        292 GY  293 (402)
T ss_pred             HH
Confidence            33

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.92  E-value=7.2e-24  Score=217.24  Aligned_cols=287  Identities=13%  Similarity=0.062  Sum_probs=203.2

Q ss_pred             HHHHHHHHhhhhhhcccchH-HHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH---hhHHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL---CALPMII  130 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~i  130 (391)
                      ..+++.+.+++....+.... ..+..+.+.+... ..++..+++.+++.++++++|+++||+|||+++..   +.+...+
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         19 TQFFGAFNDNFLKNALVILILYGLSGALGAYNNA-LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            33444444444443333332 3444444433222 34788899999999999999999999999997533   2233333


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHH
Q 016350          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (391)
Q Consensus       131 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  210 (391)
                      ..+.+...+++++++++|+++|++.+...|+..+++.|++|+++|++++++.+++..+|.++||++++++.+..+ |++.
T Consensus        98 ~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~  176 (1140)
T PRK06814         98 LAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVIL  176 (1140)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHH
Confidence            333344458999999999999999999999999999999999999999999999999999999999999998888 9999


Q ss_pred             HHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHH
Q 016350          211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (391)
Q Consensus       211 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (391)
                      |+..++..++.++..+++|+++...  ++.+.+ ....+                       +....++.+.+++.++..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~-----------------------~~~~~~~~~~~~~~~~~~  230 (1140)
T PRK06814        177 VALLMGIAVLGWLASLFIPKTGNAA--PDLKID-RNIIR-----------------------STITLLKYAKADKRIWLA  230 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec-cchHH-----------------------HHHHHHHHHhcCchHHHH
Confidence            9666565665556666676653210  000000 00000                       001134556678888888


Q ss_pred             HHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 016350          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (391)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  369 (391)
                      .+..++..+.......+++.|+.+.++.+....+.+....+++.++|.++.|++.|+..+++.+..+.++.+++.+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~  309 (1140)
T PRK06814        231 ILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLA  309 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHH
Confidence            7777777666666667888888887777777788899999999999999999999888776666555555555444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.92  E-value=2.6e-23  Score=189.17  Aligned_cols=286  Identities=18%  Similarity=0.147  Sum_probs=195.7

Q ss_pred             HHHHHHHHHhhhhhhcccchHHHh-HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           54 LVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +.+....++.........|.+|.+ .+++|.+..+.  |++.+++.++..+++++.|+++||+|||+.++.+....+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   82 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF   82 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            344455666666667777888765 45689887777  999999999999999999999999999999988777665544


Q ss_pred             HHH---Hhh-----hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc
Q 016350          133 SIS---ATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (391)
Q Consensus       133 ~~~---~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (391)
                      ...   .+.     +.+..+++.|++.|++.+...+....+..|..  +++++..+......++|..++|.+++.+.+. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-  159 (396)
T TIGR00882        83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-  159 (396)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc-
Confidence            332   111     22344567789999988888888877777753  3345677777788889999999999987664 


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhcc-ccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccc
Q 016350          205 GWWRICFWVSIVPAAILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY  283 (391)
Q Consensus       205 ~~w~~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (391)
                      + ||..|++.++..++..+..+.. +|+|+.       ++..+..                 + .+.++.+..+..++++
T Consensus       160 ~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-----------------~-~~~~~~~~~~~~~~l~  213 (396)
T TIGR00882       160 D-PQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVANAL-----------------G-ANASAFSLKLALELFR  213 (396)
T ss_pred             C-chHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhccc-----------------c-cccCCCCHHHHHHHHc
Confidence            5 9999999887777765555443 333210       0000000                 0 0011112234667888


Q ss_pred             ccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCC---ChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 016350          284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (391)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (391)
                      +|.++...+..+...........+.+.|.++.++..+.   ..+.......+...++.+..+++.||+++|+.+.++..+
T Consensus       214 ~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l  293 (396)
T TIGR00882       214 QRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTI  293 (396)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            88887665554444433333344567777766532222   245667777788888999999999999999999888887


Q ss_pred             HHHHHHHHHH
Q 016350          361 MAVSMAIQVA  370 (391)
Q Consensus       361 ~~~~~~~~~~  370 (391)
                      .++...+...
T Consensus       294 ~~l~~~~~~~  303 (396)
T TIGR00882       294 MSVRIIGSSF  303 (396)
T ss_pred             HHHHHHHHHh
Confidence            7776666554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=6.3e-23  Score=189.66  Aligned_cols=308  Identities=12%  Similarity=0.115  Sum_probs=197.0

Q ss_pred             HHHHHHHHHHHHhhhhhhcccch-HHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhHHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPM  128 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~  128 (391)
                      +.+..+++..+...+......+. ...+.+++|++.++.  +++.+.+.....+..+++|+++|| +|||++++.+.+++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~   91 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL   91 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence            34555555555555555544444 456677899987777  799999998888889999999999 99999999999999


Q ss_pred             HHHHHHHHhhhhHHH-HHHHHHHhhhccchhhHHHHHHHhhcCCcc--ccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          129 IIGASISATTRNLIG-MLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      +++++.++++++... ++++|+++|+|.|...+...++++|.+|++  +|+++.++++.+.++|..++|.+++++.+..|
T Consensus        92 ~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207         92 AIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999876554 457899999999999999999999999877  45779999999999999999999999999888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccccchhHHH--HcCCHHHHHHHHH-------------HHhCCCCchhHH-H-------
Q 016350          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLY--KKGRTAEAEAEFE-------------KLLGGSHVKSSL-A-------  262 (391)
Q Consensus       206 ~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~-------  262 (391)
                       ||+.|++.++..++.++.+.+.++..+...  .++++.+......             ............ .       
T Consensus       172 -w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  250 (489)
T PRK10207        172 -YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVT  250 (489)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence             999999865544433333333332211000  0011111111100             000000000000 0       


Q ss_pred             -HhhhcccCCCCccccchhcccccchhHHHH--HHHHHHHHhhhchhhHHHhHHHHHhhc--CC--ChhHHHHHHHHHHH
Q 016350          263 -ELSKLDRGDDGDIVKFEELLYGRHFRVVFI--GSTLFALQQLSGINAIFYFSSSVFKSA--GL--SSGLANVFVGIANL  335 (391)
Q Consensus       263 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~  335 (391)
                       .....+.+ .      .+.+|+|.+....+  ...++........+.++.|.++..+..  +.  .+........+..+
T Consensus       251 ~~f~~~~~~-~------~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ii  323 (489)
T PRK10207        251 IIFFREAFK-L------DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVV  323 (489)
T ss_pred             HHHHHHHhc-C------CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHH
Confidence             00000000 0      13455555443322  233344444444466777776533332  11  22334444556666


Q ss_pred             HHHHHHHHHHhhhCchH-------HHHHHHHHHHHHHHHH
Q 016350          336 LGSVVAMVLMDKLGRKA-------LLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       336 ~~~~~~g~l~d~~~~~~-------~~~~~~~~~~~~~~~~  368 (391)
                      +..++.+++.||+++|+       .+.+|+++.+++++.+
T Consensus       324 i~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~  363 (489)
T PRK10207        324 VASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTA  363 (489)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            77788899999999886       3667777777776544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.91  E-value=9.8e-23  Score=186.82  Aligned_cols=288  Identities=18%  Similarity=0.116  Sum_probs=181.7

Q ss_pred             HHHHHHHhhhhhhcccchHHHh-HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHH
Q 016350           56 ATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (391)
                      +....+..........+.+|.+ .+++|++..+.  |++.+++.++..++++++|+++||+|||++++.+..+.+++...
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~   92 (420)
T PRK09528         15 FSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGP   92 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            3344555555555566777655 44599988777  99999999999999999999999999999998876665554332


Q ss_pred             HH---hhh-----hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350          135 SA---TTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       135 ~~---~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      ..   .++     .....++++++.|.+.....+....+..+ . .+++++..+.......+|..++|.+++.+.+. + 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-  168 (420)
T PRK09528         93 FFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-  168 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-
Confidence            21   111     11122334444444444433333333322 2 34577888888888999999999999988764 5 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccc
Q 016350          207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH  286 (391)
Q Consensus       207 w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (391)
                      |++.|++.++..++..+..++.+++++....  +.++..                      ++++.....+..+.+++|.
T Consensus       169 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------------------~~~~~~~~~~~~~~l~~~~  224 (420)
T PRK09528        169 PQINFWLGSGSALILLVLLFFAKPDAPSTAK--VANALG----------------------ANASAVSLKDALALLKLPK  224 (420)
T ss_pred             chHhHHHHHHHHHHHHHHHhcccccccchhh--hccchh----------------------cccccccHHHHHHHccCCC
Confidence            8999998887777666555554333211000  000000                      0000111123445677787


Q ss_pred             hhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCC---ChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 016350          287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (391)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (391)
                      ++...+................+.|..+.++..+.   ..+.......++..++.++.|++.||+++|+.+..+..+..+
T Consensus       225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~  304 (420)
T PRK09528        225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAV  304 (420)
T ss_pred             eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            76555444333333333334566676665543332   245677777888889999999999999999998888888888


Q ss_pred             HHHHHHHHhc
Q 016350          364 SMAIQVAASS  373 (391)
Q Consensus       364 ~~~~~~~~~~  373 (391)
                      +.+++.+..+
T Consensus       305 ~~~l~~~~~~  314 (420)
T PRK09528        305 RIIGSGFATG  314 (420)
T ss_pred             HHHHHHhccc
Confidence            7777665443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.90  E-value=3.5e-23  Score=174.47  Aligned_cols=140  Identities=24%  Similarity=0.273  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhc
Q 016350           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (391)
Q Consensus        90 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  169 (391)
                      .|.+.+.|.++..+.++.+|.++||+|||+++++|++..++...+.+.+.|+..++++|++.|+..|-.. ...++++|.
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v~rAiisdV  148 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS-VIRAIISDV  148 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH-HHHHHHHhh
Confidence            4899999999999999999999999999999999999999999999999999777777999999888876 667899999


Q ss_pred             CCccccchHHHHHHHHHHHHHHHHHHhcccccc---ccchhHHHHHH----HHHHHHH-HHHHhhccccch
Q 016350          170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---IAGWWRICFWV----SIVPAAI-LCLAMVFCAESP  232 (391)
Q Consensus       170 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~w~~~f~~----~~~~~~~-~~~~~~~~~e~~  232 (391)
                      +++|+|+++++.++..+++|.++||.+|+++.+   ..+  +.+|..    ..+.... .....+++||+-
T Consensus       149 ~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  149 VSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             cChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            999999999999999999999999999999987   333  222222    2222222 334457789984

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.90  E-value=5.5e-23  Score=188.63  Aligned_cols=320  Identities=15%  Similarity=0.104  Sum_probs=226.8

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      -+.|...+...+......-.....+...+.++++++.+.++.  +|+.++..-...+..++.+.+.||+|.|++.+.|.+
T Consensus        42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            334545555545544444444455678999999999988876  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHH-HHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          127 PMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      +.+++.++.+++++++++++. -++.|+|.|..+.....++..+| +|+|+.+.|+...+.++|.++-|.+...+.+..|
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G  198 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG  198 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence            999999999999999988885 79999999999999988899877 5779999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccc-chhHHHHcCCHHHHHHHHH------------HH-hCCCCch----hHHHHhhhc
Q 016350          206 WWRICFWVSIVPAAILCLAMVFCAE-SPHWLYKKGRTAEAEAEFE------------KL-LGGSHVK----SSLAELSKL  267 (391)
Q Consensus       206 ~w~~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~----~~~~~~~~~  267 (391)
                       ||+.+++.+.+.+-..+....+.+ +++....   .++..+...            .. .......    .......+.
T Consensus       199 -~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (509)
T KOG2504|consen  199 -WRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRG  274 (509)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhC
Confidence             999998877777665555444333 3221000   000000000            00 0000000    000111111


Q ss_pred             ccCCC--Cccc-c---chhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q 016350          268 DRGDD--GDIV-K---FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVA  341 (391)
Q Consensus       268 ~~~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (391)
                      +++..  ..+. .   ..++++++.++...+...+.....+.....++.|.. ..+....+.+......++...+++++.
T Consensus       275 ~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~  353 (509)
T KOG2504|consen  275 PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIIL  353 (509)
T ss_pred             CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhh
Confidence            11111  1111 1   257889998888888887777777666666666665 345555667889999999999999999


Q ss_pred             HHHHhhhCc--hHHHHHHHHHHHHHHHHHHHHhcc
Q 016350          342 MVLMDKLGR--KALLQWSFFSMAVSMAIQVAASSS  374 (391)
Q Consensus       342 g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  374 (391)
                      |++.|+...  +....++.+..+++.+...+..+.
T Consensus       354 G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~  388 (509)
T KOG2504|consen  354 GLLADKPGIRALVLFLLTLLIAGLARLFLPFATTY  388 (509)
T ss_pred             hhhcCccccchHHHHHHHHHHHHHHHHHHHHhccH
Confidence            999999873  444555666666666555555544

>PTZ00207 hypothetical protein; Provisional

Probab=99.89  E-value=5.7e-21  Score=176.79  Aligned_cols=150  Identities=17%  Similarity=0.078  Sum_probs=124.0

Q ss_pred             cccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh------hhHH
Q 016350           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT------RNLI  142 (391)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~  142 (391)
                      ..+...|.+.+++|++.++.  +++.++. ....+++++.|++.||+|||++++++.++++++.++++++      ++++
T Consensus        45 ~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~  121 (591)
T PTZ00207         45 AFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV  121 (591)
T ss_pred             HHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence            34567789999999988776  7777763 4455678889999999999999999999999999999997      6899


Q ss_pred             HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHH-HHHhccccccccchhHHHHHHHHHHHHHH
Q 016350          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG-SLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (391)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~w~~~f~~~~~~~~~~  221 (391)
                      .+++.|+++|+|.+...+.....+.+|+| ++||++.|+...+.++|..+ +++..+.+.  .+ |+..|++.++..++.
T Consensus       122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~-~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DN-TSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-HHHHHHHHHHHHHHH
Confidence            99999999999999999899999999996 77999999999999999864 555555544  23 788777776666665


Q ss_pred             HHHh
Q 016350          222 CLAM  225 (391)
Q Consensus       222 ~~~~  225 (391)
                      .++.
T Consensus       198 ~ll~  201 (591)
T PTZ00207        198 GILA  201 (591)
T ss_pred             HHHH
Confidence            4444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.89  E-value=2.3e-21  Score=176.81  Aligned_cols=277  Identities=13%  Similarity=0.067  Sum_probs=184.0

Q ss_pred             HHHHHHHhhhhhhcc-cchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh-hHHHHHhhHHHHHHHH
Q 016350           56 ATLSSFLFGYHLGVV-NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGAS  133 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~  133 (391)
                      +++..+......... ++..+.+.+++|++.++.  |++.+++.++..++++++|+++||+|| |+++.++.++.+++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            344455555555555 445566777899988777  999999999999999999999999965 7888888888888888


Q ss_pred             HHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHh--------hcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT--------EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      +..+.++++.+++.|++.|++.+...+...++..        |......|.+..|      .+|..+++.+++.+.....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~  158 (418)
T TIGR00889        85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS  158 (418)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence            8899999999999999999987777666555432        2232334555555      3567777777776633333


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccccc
Q 016350          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (391)
Q Consensus       206 ~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (391)
                       |+. |++.++..++..+..+++||+|+.   ++++++..+                         +....+.++++|+|
T Consensus       159 -~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~-------------------------~~~~~~~~~~~k~~  208 (418)
T TIGR00889       159 -NIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKMSIK-------------------------VMLGLDAFILFKNK  208 (418)
T ss_pred             -hHH-HHHHHHHHHHHHHHHhcCCCCCCC---ccccccCHH-------------------------HHhhhhHHHHhcCC
Confidence             554 445555455554555677876521   110000000                         00011234567778


Q ss_pred             chhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcC--------CChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHH
Q 016350          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG--------LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (391)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  357 (391)
                      .++...+..++............+.|..+. +.+.        ...+.......+..+++.+..+++.||+|+|+++.++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~  287 (418)
T TIGR00889       209 RMAIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS  287 (418)
T ss_pred             CeeeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            777666665555443333333344444432 2111        2346777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 016350          358 FFSMAVSMAIQVAA  371 (391)
Q Consensus       358 ~~~~~~~~~~~~~~  371 (391)
                      .++..++..++...
T Consensus       288 ~~~~~v~~~l~~~~  301 (418)
T TIGR00889       288 LVAWALRFGFFAYG  301 (418)
T ss_pred             HHHHHHHHHHHHHc
Confidence            98888877666653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.5e-20  Score=158.27  Aligned_cols=285  Identities=16%  Similarity=0.146  Sum_probs=231.1

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +..+.+..+----..+.++|.++++.+|+|+|.+..  |+++++..+...+.+++..++..|+|.++.+..++++.+++.
T Consensus        14 i~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~   91 (395)
T COG2807          14 LAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI   91 (395)
T ss_pred             HHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            333333344444556778999999999999998888  999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHH
Q 016350          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (391)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~  212 (391)
                      ++-... +...++.+-.+.|.|.+...+..+.++.+.||+ +-+..+|++....++|..+++.+...+.++.++||....
T Consensus        92 ~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~  169 (395)
T COG2807          92 LIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG  169 (395)
T ss_pred             HHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence            999887 778889999999999999999999999999974 589999999999999999999999988888755999999


Q ss_pred             HHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350          213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (391)
Q Consensus       213 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      +-+.++++.++.++.-...       ++.                           ...+.+..+..+++++|.-|.+.+
T Consensus       170 ~WAl~allAl~~WlPq~~r-------~~~---------------------------~~~~~~~~~~~~vw~~~~aW~vtL  215 (395)
T COG2807         170 FWALLALLALLIWLPQALR-------EQA---------------------------ASIATKLVSVRKVWRSPLAWQVTL  215 (395)
T ss_pred             HHHHHHHHHHHHHhhhccc-------ccc---------------------------cccccccccccccccCchhHHHHH
Confidence            9999888888777532211       000                           011112233455889999998888


Q ss_pred             HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHHH
Q 016350          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      ...+..+..++...|+|.++.+ .+.+..++|.+.....+..++.++....+.+|. ++|+........+.++.+.+.+.
T Consensus       216 fmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~  294 (395)
T COG2807         216 FMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA  294 (395)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            8888888877777777777665 366666788899999999999999999999975 56777777888888888887766


Q ss_pred             hccCC
Q 016350          372 SSSYI  376 (391)
Q Consensus       372 ~~~~~  376 (391)
                      +....
T Consensus       295 P~~~~  299 (395)
T COG2807         295 PGQLP  299 (395)
T ss_pred             hhhHH
Confidence            65543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.89  E-value=4.7e-21  Score=177.19  Aligned_cols=172  Identities=15%  Similarity=0.159  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHh-h--hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISL-D--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPM  128 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~  128 (391)
                      +..+.+..+...+......+.+|.+.+ +  +|++..+.  +++.+.+.++..++++++|+++|| +|||++++.+.++.
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            445555666666776666777776654 4  78887776  899999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccc---cchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      +++.++.+++++++.++++|++.|+|.|...+...++++|++|+++   |+++.++.+.+.++|..+||.+++.+.+..+
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999998754   8889999999999999999999999988878


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhc
Q 016350          206 WWRICFWVSIVPAAILCLAMVF  227 (391)
Q Consensus       206 ~w~~~f~~~~~~~~~~~~~~~~  227 (391)
                       |++.|.+.++..++..+.+++
T Consensus       170 -~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       170 -YHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHH
Confidence             999999877655544444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=1.3e-20  Score=173.88  Aligned_cols=293  Identities=18%  Similarity=0.161  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      .+..++.+.++..++..+....++-+..+..  .+....+++..+..+...+.++++|.++||+.||++++.+.++.++.
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt--~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~   88 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLT--GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALV   88 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence            3445566777777777777777777766654  45555599999999999999999999999999999999998887766


Q ss_pred             HHHHHhh-----hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350          132 ASISATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       132 ~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      .+..++.     .+.+.+++.-++.|++.+...|+..+++.|..|+++...+.++.+...++..++||.+||.+....| 
T Consensus        89 ~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-  167 (524)
T PF05977_consen   89 ALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-  167 (524)
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-
Confidence            5554432     4678899999999999999999999999999999999999999999999999999999999998887 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccc
Q 016350          207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH  286 (391)
Q Consensus       207 w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (391)
                      -.+.|.+.++..++.++.....+++++   .+..++|  +..+.                       -...++-+.++|.
T Consensus       168 ~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e--~~~~~-----------------------l~~G~ryv~~~~~  219 (524)
T PF05977_consen  168 AAAAFLINALSFLISILALLRWKPPPP---PSSLPRE--RFFSA-----------------------LREGLRYVRSSPP  219 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccc---ccccchh--hhhhh-----------------------HHHHHHHHhcchH
Confidence            578888877665554444433332211   0111111  00000                       0111222344566


Q ss_pred             hhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 016350          287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (391)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  366 (391)
                      .+..+...+++.+........+|.+..+.++......|++....+++.++|.++.+++.+|+++++++..+.+..+++++
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~  299 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALL  299 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHH
Confidence            66555545554444444445677777777777777788899999999999999999999999998888888888888887


Q ss_pred             HHHHHhccC
Q 016350          367 IQVAASSSY  375 (391)
Q Consensus       367 ~~~~~~~~~  375 (391)
                      .+.+.++.+
T Consensus       300 ~lal~~~~~  308 (524)
T PF05977_consen  300 LLALSPSFW  308 (524)
T ss_pred             HHhcchHHH
Confidence            777765543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=2.7e-21  Score=178.53  Aligned_cols=267  Identities=17%  Similarity=0.151  Sum_probs=188.6

Q ss_pred             hHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc----chhh-HHHHHhhHHHHHHHHHHHhhhh------H
Q 016350           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------L  141 (391)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~  141 (391)
                      ..+.+.+++|+++.+.  |++.++..+..++..|+.|+++||    +||| +.++.+....+++.+++...++      .
T Consensus        22 l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            4566777899988777  999999999999999999999997    7874 4677788888888887776653      4


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHHHhhcC-CccccchHHHHHHHHHHHHHHHHHHhccccc-------cccchhHHHHHH
Q 016350          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------EIAGWWRICFWV  213 (391)
Q Consensus       142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-------~~~~~w~~~f~~  213 (391)
                      ..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.       +..+ ||+.+.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i  178 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence            56677888889888887777778888887 4688999999988888888766655544333       2335 9999988


Q ss_pred             HHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350          214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (391)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      .+++.++..+.. ++.+|+++    + ++++                        ++++......+++++++|.++...+
T Consensus       179 ~~~l~~~~~~~~~~~~~e~~~----~-~~~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~~  229 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKERYS----E-IPKN------------------------IEKKLSLKQIFKALFKNDQLLILCL  229 (437)
T ss_pred             HHHHHHHHHHHHHcCCEecCC----C-CCcc------------------------cccCCCHHHHHHHHhCCHHHHHHHH
Confidence            887777665544 55666531    0 0000                        0000011223556778888887776


Q ss_pred             HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      ..++............++|.+..++ .....+.......++.+++.++.+++.||+|+|+.+.++..+.+++.+.+.+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~  308 (437)
T TIGR00792       230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG  308 (437)
T ss_pred             HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc
Confidence            6666655554433444455544333 222345566667888999999999999999999999988888888777666543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.85  E-value=4.2e-19  Score=161.28  Aligned_cols=276  Identities=13%  Similarity=0.021  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHH--HHHHHHHHHHHHHHH-HHhhhcchhhHHHHHhhHHH-
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLV--VSMCLGGAFIGSTLS-GWIADGVGRRRAFQLCALPM-  128 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~s~~~~~~~i~~~~~-g~l~dr~Grr~~l~~~~~~~-  128 (391)
                      ...+...++..+.......|.+|.+.+|.|.+.+++  |++  .+++.+...+.++++ ++..||+||||.+++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            445666778888888999999999999999988877  886  355667777777777 44789999999876655332 


Q ss_pred             HHHHHHHH---hhhh-HHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc
Q 016350          129 IIGASISA---TTRN-LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (391)
Q Consensus       129 ~i~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (391)
                      ++.....+   ...+ ..+++..-++.++..+...+....+..|..++++++...+....+..+|.++++...+.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222222   2222 3344445555666677777777888888888888888888888888999999998888888888


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccc
Q 016350          205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG  284 (391)
Q Consensus       205 ~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (391)
                      + ||..|++.++..++..+..++.+|+++.   +++.++                             ....+.++++|+
T Consensus       161 g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~-----------------------------~~~~~~~~~l~~  207 (390)
T TIGR02718       161 G-QRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL-----------------------------ARRASLFRFFRR  207 (390)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch-----------------------------hhHHHHHHHHcC
Confidence            8 9999999888777665555555443210   000000                             001124567777


Q ss_pred             cchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHH-HHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 016350          285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (391)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (391)
                      |..+......++........+.+.+.|..+ .+.+..+.+......+ ...+++.++.|++.||+++|+.+..+..+..+
T Consensus       208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       208 PLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS  286 (390)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            887777666666666555555666666655 3444444566555554 45667789999999999999988877665533


Q ss_pred             H
Q 016350          364 S  364 (391)
Q Consensus       364 ~  364 (391)
                      .
T Consensus       287 ~  287 (390)
T TIGR02718       287 L  287 (390)
T ss_pred             H
Confidence            3

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.84  E-value=7.4e-19  Score=163.57  Aligned_cols=166  Identities=16%  Similarity=0.162  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHhhhhhhcccchHH-HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMII  130 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i  130 (391)
                      +..+++..+...+......+.++ .+.+++|++.++.  +++.+.+........+++|+++|| +|||++++.+.++.++
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i  100 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI  100 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            33444455555555444445544 5568899987776  677777766666667889999999 5999999999999999


Q ss_pred             HHHHHHhhh-hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccc--cchHHHHHHHHHHHHHHHHHHhccccccccchh
Q 016350          131 GASISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (391)
Q Consensus       131 ~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (391)
                      +..++++++ +...+.++|+++|++.|...+...+++.|++|+++  |..+.++++.+.++|..++|.+++++.+..| |
T Consensus       101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~  179 (500)
T PRK09584        101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-W  179 (500)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-H
Confidence            999998875 56667788999999999988888899999998654  4567888999999999999999999998888 9


Q ss_pred             HHHHHHHHHHHHHH
Q 016350          208 RICFWVSIVPAAIL  221 (391)
Q Consensus       208 ~~~f~~~~~~~~~~  221 (391)
                      |+.|.+.++..++.
T Consensus       180 ~~~F~i~~i~~~i~  193 (500)
T PRK09584        180 SVAFALSVVGMLIT  193 (500)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999877544443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.82  E-value=3.6e-18  Score=147.98  Aligned_cols=288  Identities=16%  Similarity=0.120  Sum_probs=206.7

Q ss_pred             CCcchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 016350           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (391)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  123 (391)
                      +..+++|..+++.++..+.+.+.+..+++........|+ +.+..  -|+.-+|++.+....+++-|+.|++|-|..+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            456777888888888888999999888999888999999 44444  599999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhh------hHH--HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHH
Q 016350          124 CALPMIIGASISATTR------NLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (391)
Q Consensus       124 ~~~~~~i~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  195 (391)
                      +..+.++|..+-..+.      .++  ....+..+.+.+.-........+..-||++++|..+..+-.+++.+|..++.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999999877652      344  66678888888777776666677888999999999999999999999999999


Q ss_pred             hcccccccc----c-hhHH--HHHHHHHHHHH-HHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhc
Q 016350          196 IGIPVKEIA----G-WWRI--CFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL  267 (391)
Q Consensus       196 ~~~~l~~~~----~-~w~~--~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (391)
                      +.+.+..+.    + .|..  .|+.......+ .....+..++.|+....     .+....                   
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps-----~s~~~~-------------------  250 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS-----ASQAAL-------------------  250 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----hhHhhh-------------------
Confidence            998887655    1 1544  34433333333 22233444444321100     000000                   


Q ss_pred             ccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHH---hhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 016350          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF---KSAGLSSGLANVFVGIANLLGSVVAMVL  344 (391)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l  344 (391)
                       . +.+-..+.++.++++++....+++........+    ++..+...+   ++.+..+|+......++++++++++|.+
T Consensus       251 -~-~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~----l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii  324 (480)
T KOG2563|consen  251 -Q-DASFPKSIKSCFKNRQFIILAICYGIGLGLFNS----LSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII  324 (480)
T ss_pred             -h-cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHH----HHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence             0 112345677788999988777666555544433    333333222   4455678999999999999999999999


Q ss_pred             HhhhCc-hHHHHHHHHHHHHH
Q 016350          345 MDKLGR-KALLQWSFFSMAVS  364 (391)
Q Consensus       345 ~d~~~~-~~~~~~~~~~~~~~  364 (391)
                      .||.+. |.+..+......++
T Consensus       325 ~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  325 ADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             hhhhhhHHHHHHHHHHHHHHH
Confidence            999876 44555555555555

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.80  E-value=1.6e-17  Score=150.90  Aligned_cols=294  Identities=15%  Similarity=0.165  Sum_probs=193.2

Q ss_pred             HHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhh----cchhhHHHHHh-hHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQLC-ALPMI  129 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~  129 (391)
                      .++...+-..+......+.++.+.+++|.+....  +++..+..+...+.+++.|+++|    |+|||+.++.+ .....
T Consensus         8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~   85 (477)
T TIGR01301         8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA   85 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence            4444444445666667777888889999987666  89999999999999999999999    59999998875 66666


Q ss_pred             HHHHHHHhhhhHH-----------------HHHHHHHHhhhccchhhHHHHHHHhhcCCcccc--chHHHHHHHHHHHHH
Q 016350          130 IGASISATTRNLI-----------------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGL  190 (391)
Q Consensus       130 i~~~~~~~~~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~  190 (391)
                      ++.++.+++++..                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|.
T Consensus        86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~  165 (477)
T TIGR01301        86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN  165 (477)
T ss_pred             HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence            6667777776643                 223333344557777888889999999998865  579999999999999


Q ss_pred             HHHHHhcccc--cccc------------chhHHHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCC
Q 016350          191 MGSLLIGIPV--KEIA------------GWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGS  255 (391)
Q Consensus       191 ~~~~~~~~~l--~~~~------------~~w~~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  255 (391)
                      ++|+.+++..  .+..            .+.|..|++.++..++..+.. +..+|.|...  +++.++  ++.++     
T Consensus       166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~~~~~-----  236 (477)
T TIGR01301       166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--SEAAP-----  236 (477)
T ss_pred             HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--hhccc-----
Confidence            9999998764  1110            136889999887777765544 6678865311  110000  00000     


Q ss_pred             CchhHHHHhhhcccCCCCccccchhcc----c-ccchhHHHHHHHHHHHHhhhchhhHHHhHH-HHHhhcCC-----Ch-
Q 016350          256 HVKSSLAELSKLDRGDDGDIVKFEELL----Y-GRHFRVVFIGSTLFALQQLSGINAIFYFSS-SVFKSAGL-----SS-  323 (391)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~-  323 (391)
                                   .++......+++++    + .|.++.+.+..++.++..+....+.+.|.. ++++..+.     +. 
T Consensus       237 -------------~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~g  303 (477)
T TIGR01301       237 -------------PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDG  303 (477)
T ss_pred             -------------ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHH
Confidence                         00000001112222    1 356777777777777777666555555554 34443221     11 


Q ss_pred             ---h-HHHHHHHHHHHHHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHHHHh
Q 016350          324 ---G-LANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       324 ---~-~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                         | +......+...+.+++-.++.+|+|+ |.+..++.++.++++....+..
T Consensus       304 vr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~  357 (477)
T TIGR01301       304 VRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVT  357 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence               1 24445566666777888889999985 6666888888888877776554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.79  E-value=1.4e-16  Score=145.44  Aligned_cols=169  Identities=18%  Similarity=0.161  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHh-HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhHHHHHhhHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMII  130 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i  130 (391)
                      +..++...+...+........+|.+ .+++|++.++.  +.+.+.+.....++++++|+++||+ |||++++.+.++.++
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            3344444444454444455556644 56689887777  7889999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhh-hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc--ccchHHHHHHHHHHHHHHHHHHhccccccccchh
Q 016350          131 GASISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (391)
Q Consensus       131 ~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (391)
                      +.++.+..+ +...+.++..+.++|.|...+...++++|.+|++  +|..+.++.+.+.++|..++|.+.+++.+..| |
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w  167 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-W  167 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-h
Confidence            988776543 2233444444555666776677778999999875  69999999999999999999999999988888 9


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 016350          208 RICFWVSIVPAAILCLA  224 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~~~  224 (391)
                      ++.|.+.++..++.++.
T Consensus       168 ~~~F~iaaigm~l~li~  184 (493)
T PRK15462        168 AMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999876544443333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1e-18  Score=141.73  Aligned_cols=309  Identities=17%  Similarity=0.099  Sum_probs=214.4

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHh
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLC  124 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~  124 (391)
                      ..++...++..|+..|-.++..........++..|.+++.++.  .++.++|.....+.+++.|++.|| +|-|..-++-
T Consensus        39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~  116 (459)
T KOG4686|consen   39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL  116 (459)
T ss_pred             hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence            3444555666666677777777777888889999999988777  799999999999999999999996 8888776666


Q ss_pred             hHHHHHHHHHHH---hhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc
Q 016350          125 ALPMIIGASISA---TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (391)
Q Consensus       125 ~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (391)
                      +....+|.++.+   ..+.+|++..+|++.|+|.-...++...+..-||..|+-+.++|+......+|..+.-.+.+++.
T Consensus       117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly  196 (459)
T KOG4686|consen  117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY  196 (459)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence            666677777664   46899999999999999999999999999999999999999999999999999887777777666


Q ss_pred             cccchh-----HHHHHH-------HHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhccc
Q 016350          202 EIAGWW-----RICFWV-------SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDR  269 (391)
Q Consensus       202 ~~~~~w-----~~~f~~-------~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (391)
                      +..+..     +....+       .....++++...-+.            .+.+++.+++                 ++
T Consensus       197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~------------D~rAerilh~-----------------e~  247 (459)
T KOG4686|consen  197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS------------DDRAERILHL-----------------EE  247 (459)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHhh-----------------hc
Confidence            543310     000000       111111111111000            0111111111                 11


Q ss_pred             CCCCccccchhcc-cccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 016350          270 GDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL  348 (391)
Q Consensus       270 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  348 (391)
                      ....+..+..+.. ..+.+|.+.+.++++....+-.+..-+.+.++.++.++.+++.+.+.......+.+++.|.++||+
T Consensus       248 g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~  327 (459)
T KOG4686|consen  248 GFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY  327 (459)
T ss_pred             CcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh
Confidence            1111111111111 237889999999999888888888888999999999999999888888888889999999999999


Q ss_pred             CchHHHHHHHHHHHH-HHHHHHHHhccCCCCchHhHHhhh
Q 016350          349 GRKALLQWSFFSMAV-SMAIQVAASSSYIPGSASLYLSVG  387 (391)
Q Consensus       349 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      |++.+.+.+..+..+ +-..+.+.  ..+.+..+.++++.
T Consensus       328 G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  328 GFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLS  365 (459)
T ss_pred             cceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhh
Confidence            998777665554444 33333332  23344555555543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.78  E-value=6.1e-18  Score=155.40  Aligned_cols=269  Identities=16%  Similarity=0.182  Sum_probs=203.7

Q ss_pred             chHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhh----cchhhHHHH-HhhHHHHHHHHHHHhh-h------
Q 016350           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQ-LCALPMIIGASISATT-R------  139 (391)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~-~~~~~~~i~~~~~~~~-~------  139 (391)
                      ...+.+.+.+|+++...  |++..+..+..++..|+.|.++|    |+||||.++ .+....+++.+++... +      
T Consensus        23 ~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            34566777779987666  89999999999999999999999    899776554 5778888887777655 3      


Q ss_pred             -hHHHHHHHHHHhhhccchhhHHHHHHHhhcCC-ccccchHHHHHHHHHHHHHHHHHHhccccccccc------hhHHHH
Q 016350          140 -NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICF  211 (391)
Q Consensus       140 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~w~~~f  211 (391)
                       ....+.+..++..++.........++..|+.+ +++|.+..+.-..+..+|.++...+.+.+.+..+      +|++..
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~  180 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA  180 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence             23345677777788888888888999999997 5789999999999888888766666665553222      388888


Q ss_pred             HHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHH
Q 016350          212 WVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (391)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (391)
                      .+.+++.++..+.. +..+|+++      +.++                        ++++......++++++||.++..
T Consensus       181 ~v~~iv~~v~~~i~~~~~ke~~~------~~~~------------------------~~~~~~~~~~~~~~~~nr~~~~l  230 (428)
T PF13347_consen  181 LVLAIVGLVFFLITFFFVKERSV------EVTE------------------------QEKKISLRDSLRSLFRNRPFRIL  230 (428)
T ss_pred             HHHHHHHHHHhhhhhheeeeccc------cccc------------------------cccccccccchhhhcccchHHHH
Confidence            88777777665544 44566210      0000                        11222334457788899999988


Q ss_pred             HHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 016350          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (391)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  370 (391)
                      ....++............++|..+..+..+ ..+.......++.+++.++.++++||+|+|+.+..+..+.+++.+++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            888888877777777778888888777663 3456667778889999999999999999999999999999999988887


Q ss_pred             Hhc
Q 016350          371 ASS  373 (391)
Q Consensus       371 ~~~  373 (391)
                      ...
T Consensus       310 ~~~  312 (428)
T PF13347_consen  310 LGP  312 (428)
T ss_pred             HHh
Confidence            763

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.78  E-value=6.8e-18  Score=157.61  Aligned_cols=182  Identities=15%  Similarity=0.065  Sum_probs=136.1

Q ss_pred             cccchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHH---HHhhhhHHHH
Q 016350           69 VVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGM  144 (391)
Q Consensus        69 ~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~l  144 (391)
                      .....+|.+. +++|.+..+.  ++..+...++..++.++.|+++||+|||+++..+.++..++.+.   ...+++...+
T Consensus       268 ~~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (490)
T PRK10642        268 MLLTYMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI  345 (490)
T ss_pred             HHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            3344567655 5678876654  67777888999999999999999999999988877654443332   2234567778


Q ss_pred             HHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH
Q 016350          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~  224 (391)
                      ++++++.|++.+........++.|.+|++.|++++++......++..++|.+.+++.+..++|+..+++..+.+++..+.
T Consensus       346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~  425 (490)
T PRK10642        346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT  425 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            88999999887777777778889999999999999975444455567788887777765444777776666667776666


Q ss_pred             hhccccchhHHHHc-----CCHHHHHHHHHHHh
Q 016350          225 MVFCAESPHWLYKK-----GRTAEAEAEFEKLL  252 (391)
Q Consensus       225 ~~~~~e~~~~~~~~-----~~~~~~~~~~~~~~  252 (391)
                      .+++||+|++..++     ++.+|+.+.++++.
T Consensus       426 ~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        426 GVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            77789999987754     77888888887765

>PRK09669 putative symporter YagG; Provisional

Probab=99.75  E-value=3.1e-17  Score=151.46  Aligned_cols=262  Identities=15%  Similarity=0.155  Sum_probs=168.9

Q ss_pred             chHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc----chhh-HHHHHhhHHHHHHHHHHHhhhh------
Q 016350           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------  140 (391)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------  140 (391)
                      ...+.+.+++|++....  |.+.++..+..++..|+.|+++||    +||| +.++.+.+..+++.++....++      
T Consensus        31 ~l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            34567778899988777  999999999999999999999998    8874 5555677777777665544432      


Q ss_pred             HHHHHHHHHHhhhccchhhHHHHHHHhhcC-CccccchHHHHHHHHHHHHHHHHHHhcccccc-------ccchhHHHHH
Q 016350          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-------IAGWWRICFW  212 (391)
Q Consensus       141 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~w~~~f~  212 (391)
                      +..+++..++.+.+.........++.+|+. ++++|.+..++...+..+|..+++.+...+..       ..+ |+..+.
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~  187 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMM  187 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHH
Confidence            456666666777766666666778899988 46889988888887777777666654332221       224 888877


Q ss_pred             HHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHH
Q 016350          213 VSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (391)
Q Consensus       213 ~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (391)
                      +.+++.++..+.. +..+|.++.     + ++                          ++.+...+.+++++||.++...
T Consensus       188 i~~ii~~v~~~~~~~~~~e~~~~-----~-~~--------------------------~~~~~~~~~~~~~~n~~~~~l~  235 (444)
T PRK09669        188 VMGLLGVVLFFCCFFMTKERYTP-----E-VD--------------------------NSSSVWKDLKLLLGNSQWRIMF  235 (444)
T ss_pred             HHHHHHHHHHHHHhCCeEEecCC-----C-Cc--------------------------CCCCHHHHHHHHhCCchHHHHH
Confidence            7776665554443 334443110     0 00                          0011123456678889888776


Q ss_pred             HHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 016350          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (391)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  369 (391)
                      ...++.............+|.....+. +...+.......+..+++.++.+++.||+|+|+....+.....++.+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~  312 (444)
T PRK09669        236 IFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIF  312 (444)
T ss_pred             HHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            665555444333233333344333322 11123344455677778889999999999999998887766555444333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.75  E-value=6.6e-17  Score=149.31  Aligned_cols=298  Identities=14%  Similarity=0.059  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch-----hhHHHHHhhHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCALP  127 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~  127 (391)
                      ..++...++..+..........|.+.+++|++.++.  +...+...+...+-.+ +|+++||++     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            344444567777774444556677777899998887  7888999999988666 999999998     78888888776


Q ss_pred             HH-HHHHHHHhhhhHHHHH-HHHHHhhhccchhhHHHHHHHhhcCCccccchHHH---HHHHHHHHHHHHHHHhcccccc
Q 016350          128 MI-IGASISATTRNLIGML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA---FIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       128 ~~-i~~~~~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      .+ ++....+..++..... +..++.+++.+...+..-++..|..+ +++....+   .......+|.++++.+++.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            63 4433344445544444 47899999999999999999999998 55544333   3334445899999999999988


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcc
Q 016350          203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (391)
Q Consensus       203 ~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (391)
                      ..+ ||..|++.+...++..+..++++|++.....+.++++.... ....  .......          .+...+..+.+
T Consensus       184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~----------~~~~~~l~~~l  249 (468)
T TIGR00788       184 KTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM-ALLT--LGVLANV----------KVQILGLRGAI  249 (468)
T ss_pred             hcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh-hhhh--hhHHHHH----------HHHHHHHHHHH
Confidence            888 99999998877777766667778863100000000000000 0000  0000000          00011233345


Q ss_pred             cccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 016350          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA  362 (391)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (391)
                      ++|..+...+..++.+............+.+..++.++...|......+++.+++..+.+++.+|++.|+++.++.++.+
T Consensus       250 ~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~  329 (468)
T TIGR00788       250 QLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYT  329 (468)
T ss_pred             hcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            66777665544444111111111112224455667778888999999999999999999999999999999999888888


Q ss_pred             HHHHHH
Q 016350          363 VSMAIQ  368 (391)
Q Consensus       363 ~~~~~~  368 (391)
                      ++.+..
T Consensus       330 ~~~~~~  335 (468)
T TIGR00788       330 LSSLFD  335 (468)
T ss_pred             HHHhCc
Confidence            877554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.73  E-value=8.9e-17  Score=149.35  Aligned_cols=283  Identities=11%  Similarity=0.056  Sum_probs=175.2

Q ss_pred             HHHHHHHhhhhhhcccchH-HHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhh----cchh-hHHHHHhhHHHH
Q 016350           56 ATLSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGR-RRAFQLCALPMI  129 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~  129 (391)
                      -.++.+...+....+.+.+ ..+.+.+|++....  |.+..+.-+.-++..|+.|.++|    |+|| |+.++.+.+..+
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~   88 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANS   88 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHH
Confidence            3344444455555555544 45556679887766  89999999999999999999999    6799 566667888777


Q ss_pred             HHHHHHHhhh------hHHHHHHHHHHhhhccchhhHHHHHHHhhcC-CccccchHHHHHHHHHHHHHHHHHHhcccc--
Q 016350          130 IGASISATTR------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPV--  200 (391)
Q Consensus       130 i~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--  200 (391)
                      ++..+.-..+      .+..+++..++.+++.....+...++..|+. ++++|.+..++-..+..+|..+.+.+...+  
T Consensus        89 i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~  168 (473)
T PRK10429         89 VVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVN  168 (473)
T ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766654432      1345556667777877888888888999998 589999999886666666644444333221  


Q ss_pred             -----ccccchhHHHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCc
Q 016350          201 -----KEIAGWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGD  274 (391)
Q Consensus       201 -----~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (391)
                           .+..+ |+....+.+++.++..+.. +..+|.++.    .+.++                       .++++...
T Consensus       169 ~~g~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~~~-----------------------~~~~~~~~  220 (473)
T PRK10429        169 YVGGGDRGFG-FQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQVS-----------------------AEGSHLTL  220 (473)
T ss_pred             HhCCCchhhh-HHHHHHHHHHHHHHHHHHHHcCceecCCc----ccccc-----------------------ccccCCCH
Confidence                 11123 6776666666555544333 335554210    00000                       00001111


Q ss_pred             cccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHH
Q 016350          275 IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALL  354 (391)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  354 (391)
                      ...++.+++||.++..+...++............++|.....+ .....+.......++.+++.++.+++.||+|+|+.+
T Consensus       221 ~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~  299 (473)
T PRK10429        221 KDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW  299 (473)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            2234456678887776666655554444333333444433322 112233455555678889999999999999999998


Q ss_pred             HHHHHHHHHHHHHHH
Q 016350          355 QWSFFSMAVSMAIQV  369 (391)
Q Consensus       355 ~~~~~~~~~~~~~~~  369 (391)
                      .++..+..++.+.+.
T Consensus       300 ~~~~~~~~~~~~~~~  314 (473)
T PRK10429        300 AGASIFPVLSCGVLL  314 (473)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888776666555544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.72  E-value=1.8e-15  Score=135.95  Aligned_cols=283  Identities=16%  Similarity=0.168  Sum_probs=196.0

Q ss_pred             HHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHhhHHHHHHHHHHH
Q 016350           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISA  136 (391)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~  136 (391)
                      ...++.....+...|.++.+.++.|.+..|+  |.+.++..+...++++++|.++||++ +|+++.+..++.++......
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666667788999999999988877  99999999999999999999999986 57777777777777777777


Q ss_pred             hhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHh-ccccccccc--hhHHHHHH
Q 016350          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-GIPVKEIAG--WWRICFWV  213 (391)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~--~w~~~f~~  213 (391)
                      ..++++.+++.-++..+...+..|...++..+...  ++++-.|-.-...++|.+++... ++.+....+  .....+++
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            88899988888888888888888888888777764  33444455555555555444322 111221111  12345556


Q ss_pred             HHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHH
Q 016350          214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (391)
Q Consensus       214 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
                      .+...++.....+.+|+.|+    +++.++                         +.++....+..+++|+|++...++.
T Consensus       165 ~~~~~~ll~~~~l~lp~~~~----~~~~~~-------------------------~~~~~~~~~~~~llk~~~~~~Fll~  215 (400)
T PF03825_consen  165 AAILSLLLAGFALFLPKTPP----KRSAKE-------------------------SVKKLLGLDALKLLKNPRFLVFLLA  215 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCcc----ccccCC-------------------------CcccccchHHHHHhcCccHHHHHHH
Confidence            55555555555566777652    111000                         0001111233468888998888787


Q ss_pred             HHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhc
Q 016350          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  373 (391)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (391)
                      .++........+++.+.|+++.-+......+.......++.++.....+++.+|+|.++++.++.+..++=..++....+
T Consensus       216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~  295 (400)
T PF03825_consen  216 AFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD  295 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77777776666666677766643333444566777778899999999999999999999999999988887777776633

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.71  E-value=1.1e-15  Score=146.18  Aligned_cols=138  Identities=14%  Similarity=0.023  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCC
Q 016350           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (391)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  171 (391)
                      +...+..++..++.++.|+++||+|||++++.+.++.+++.++.+++++...+++.+++.|++.++.++...++++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34556668889999999999999999999999999999999999999888888888999999888888999999999999


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhccccc
Q 016350          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       172 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      .+.|++++|+.+....+|.+++|.+++.+.+..  ...+|++.++..++..++.+++||+
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET  736 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDT  736 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999998876643  4677777777777776667778887

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09848 glucuronide transporter; Provisional

Probab=99.70  E-value=1.1e-15  Score=141.37  Aligned_cols=279  Identities=14%  Similarity=0.155  Sum_probs=167.4

Q ss_pred             HHHHHhhhhhhcccch-HHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc----hhhHHH-HHhhHHHHHH
Q 016350           58 LSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV----GRRRAF-QLCALPMIIG  131 (391)
Q Consensus        58 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~i~  131 (391)
                      ++.+..........+. .+.+.+.+|++..+.  |.+.+...+..++..++.|+++||.    |||+.+ +.+.+...+.
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            3444444444443333 346666779887766  9999999999999999999999996    777755 5555544444


Q ss_pred             HHHH-Hh----hh--hHHHHHHHHHHhhhccchhhHHHHHHHhhcCC-ccccchHHHHHHHH-----HHHHHHHHHHhcc
Q 016350          132 ASIS-AT----TR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIA-----TCLGLMGSLLIGI  198 (391)
Q Consensus       132 ~~~~-~~----~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~~~~  198 (391)
                      .++. ..    ++  .....++.-++.+++.+...+...++..|..+ +++|.+..+.-..+     ..++..++|.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848         93 SVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4432 21    11  22334445567787777777777777777665 46788876665443     2345556666654


Q ss_pred             ccccccc-hhHHHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccc
Q 016350          199 PVKEIAG-WWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV  276 (391)
Q Consensus       199 ~l~~~~~-~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (391)
                      ....... .|.....+.+++.++..+ .....+|+++    + +                            .++.....
T Consensus       173 ~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~----~-~----------------------------~~~~~~~~  219 (448)
T PRK09848        173 SSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVV----R-I----------------------------VAQPSLKI  219 (448)
T ss_pred             hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccC----C-C----------------------------ccCCCHHH
Confidence            3321111 021111222222222222 2233444421    0 0                            00001122


Q ss_pred             cchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHH
Q 016350          277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW  356 (391)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  356 (391)
                      .++++++||.++...+..++............++|.++.++.+....+.......++.+++.++.+++.||+++|+.+.+
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            35667889999887777777766666555566667766655443333333444456677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 016350          357 SFFSMAVSMAIQVAA  371 (391)
Q Consensus       357 ~~~~~~~~~~~~~~~  371 (391)
                      +..+..++.+++.+.
T Consensus       300 g~~~~~i~~~~~~~~  314 (448)
T PRK09848        300 GALLGTCGYLLFFWV  314 (448)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            988888887776654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.69  E-value=3.6e-15  Score=133.19  Aligned_cols=187  Identities=21%  Similarity=0.234  Sum_probs=145.8

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh-hHHHHHh
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLC  124 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~  124 (391)
                      .+..|+.+.+..+..++...+.+++.+..-++.++++.+.+...-|++.++..++.+++++..|++..|.|. |+.++.+
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            344577788888889999999999888887777876655544444999999999999999999999999986 7888999


Q ss_pred             hHHHHHHHHHH-Hhh---h-hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccc
Q 016350          125 ALPMIIGASIS-ATT---R-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (391)
Q Consensus       125 ~~~~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  199 (391)
                      .++..+++++. ++.   + .-+.++++|++.|+|.|... ..-+|+++....++|.++++..+.+..+|.++||.++..
T Consensus       109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            99999999987 433   3 56788899999999888775 677899999989999999999999888888888887765


Q ss_pred             ccccc--c----------hhHHHHHHHHHHHHHHHHHh-hccccchh
Q 016350          200 VKEIA--G----------WWRICFWVSIVPAAILCLAM-VFCAESPH  233 (391)
Q Consensus       200 l~~~~--~----------~w~~~f~~~~~~~~~~~~~~-~~~~e~~~  233 (391)
                      +....  |          .+..+-|+.++..++.++.. +++.|.++
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            54322  1          02344456666666654444 55666643

>TIGR01272 gluP glucose/galactose transporter

Probab=99.69  E-value=1.2e-15  Score=133.26  Aligned_cols=205  Identities=15%  Similarity=0.127  Sum_probs=150.6

Q ss_pred             HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc-----------
Q 016350          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-----------  204 (391)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----------  204 (391)
                      +...+|..++++-++.|.|.+...+..+.++++..++|++.+.+++.+..+++|.+++|++++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            456789999999999999999999999999999999999999999999999999999999999776321           


Q ss_pred             ----chhHHHHHHHHHHHHHHHHHhhc--cccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccc
Q 016350          205 ----GWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF  278 (391)
Q Consensus       205 ----~~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (391)
                          .+|+++|++.+...++..+.+.+  +||.+      +++++  +.                     .++  +..+.
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~------~~~~~--~~---------------------~~~--~~~~~  133 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ------EADVA--RV---------------------SSG--DTTQK  133 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------ccccc--cc---------------------ccc--cccch
Confidence                24999999665555544444433  34431      11000  00                     000  00111


Q ss_pred             hhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHH--HhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHH
Q 016350          279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV--FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW  356 (391)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  356 (391)
                      ++.+++|.++...+..+++.........+.+.|+.+.  ++.+....+........+..+|+++++++.||+++|+.+.+
T Consensus       134 ~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~  213 (310)
T TIGR01272       134 TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF  213 (310)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            2355667777776777777767777778888888653  35555667788888999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHH
Q 016350          357 SFFSMAVSMAIQVAA  371 (391)
Q Consensus       357 ~~~~~~~~~~~~~~~  371 (391)
                      +..+..++.++....
T Consensus       214 ~~~l~~~~~~l~~~~  228 (310)
T TIGR01272       214 NAFLAVLLSIGAALT  228 (310)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            877777766555443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.68  E-value=3e-16  Score=120.82  Aligned_cols=136  Identities=22%  Similarity=0.384  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc
Q 016350           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (391)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  173 (391)
                      .+.+.++..++.++.|++.||+|||+.+..+.....++.+....+++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788899999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhc-ccc
Q 016350          174 VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-CAE  230 (391)
Q Consensus       174 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~-~~e  230 (391)
                      +|++..++.+....+|..+++.+++.+.+..+ |++.|++.+...++..+..++ .||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999988877 899998877776666555433 443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.67  E-value=1.8e-15  Score=133.45  Aligned_cols=291  Identities=18%  Similarity=0.198  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH--H
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM--I  129 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~  129 (391)
                      ........+...+..+...|..|...++ .|++.+++  |.+.++..+...+.+|+.|.++||.|.||-++..+...  .
T Consensus         9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            3344555566666677778888877765 89998888  99999999999999999999999999776554433222  2


Q ss_pred             HHHHHH-Hhh----hhH-HHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc
Q 016350          130 IGASIS-ATT----RNL-IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       130 i~~~~~-~~~----~~~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (391)
                      .+.... .+.    .|. ...+++-+..|+......+..-+++.++.  ++.+.=.|-.-...++|.+++..++|.+.+.
T Consensus        87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i  164 (412)
T PF01306_consen   87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI  164 (412)
T ss_dssp             CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence            222222 222    232 23444445556666666677777666654  3445666777788889989999999988875


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhcc-ccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcc
Q 016350          204 AGWWRICFWVSIVPAAILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (391)
                      .+  +..|++....+++..++.++. |+.++....++...                         .++++....+..+++
T Consensus       165 ~p--~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~  217 (412)
T PF01306_consen  165 NP--NIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG-------------------------AKKDKVSLKDVLSLF  217 (412)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-------------------------S------HHHHHHHT
T ss_pred             Cc--cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-------------------------cCCCCCcHHHHHHHh
Confidence            43  677777666555554444433 33321100000000                         000111122345788


Q ss_pred             cccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhc---CCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHH
Q 016350          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA---GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (391)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  359 (391)
                      ++|++|...+........+.......+.|.....+..   ....|++.+...+..++...+.+++.+|+|.|+.++++..
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~  297 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGV  297 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHH
Confidence            8999998777655554444443334455554433322   2235778888889999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcc
Q 016350          360 SMAVSMAIQVAASSS  374 (391)
Q Consensus       360 ~~~~~~~~~~~~~~~  374 (391)
                      ++++=.....+.++.
T Consensus       298 i~~iRi~~~~~~~~~  312 (412)
T PF01306_consen  298 IMAIRIIGSGFATNP  312 (412)
T ss_dssp             HHHHHHHHHHT--SH
T ss_pred             HHHHHHHHHhhhcch
Confidence            888877776665553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.67  E-value=6e-18  Score=156.86  Aligned_cols=304  Identities=17%  Similarity=0.184  Sum_probs=3.0

Q ss_pred             HHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (391)
                      .+++..+............++++.+.|+++.++.  |++.+.+-++..+..++..++.+|..|-+.+-.|.+++++++++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence            3444444556667777888999999999999888  99999999999999999999999988888888899999999988


Q ss_pred             HHhh------------h--------------------------------------hHHHHHHHHHHhhhccchhhHHHHH
Q 016350          135 SATT------------R--------------------------------------NLIGMLLGRFVVGTGMGLGPTVAAL  164 (391)
Q Consensus       135 ~~~~------------~--------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~  164 (391)
                      +++-            .                                      -+..++++.++.|+|....++.+.+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            7651            0                                      0356778899999999999999999


Q ss_pred             HHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc---------------------chhHHHHHHHHHHHHHHHH
Q 016350          165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------------------GWWRICFWVSIVPAAILCL  223 (391)
Q Consensus       165 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------------~~w~~~f~~~~~~~~~~~~  223 (391)
                      |+-|..++++-+..+|+..+...+|..+|.++|+.+...+                     |.|..-|++.+...++..+
T Consensus       165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai  244 (539)
T PF03137_consen  165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI  244 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998766421                     1155566666666666666


Q ss_pred             HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhh---hcccCCCCccccchhcccccchhHHHHHHHHHHHH
Q 016350          224 AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS---KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (391)
Q Consensus       224 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (391)
                      .++++|++-+...  +..++.+...++.  .+...+...+..   ...+..++-+...+++++||.+....+......+.
T Consensus       245 pl~~FPk~lp~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~  320 (539)
T PF03137_consen  245 PLFFFPKKLPGTS--ERQEEKESSERKE--EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFI  320 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHcCCccCCCcc--cccchhhhhhcch--hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            6677776522110  0000000000000  000000000000   01112233455678889999998888888888877


Q ss_pred             hhhchhhHHHhHHHHHhhcCCChhHHHHHH-HHHHHHHHHHHHHHHhhhC--chHHHHHHHHHHHHH
Q 016350          301 QLSGINAIFYFSSSVFKSAGLSSGLANVFV-GIANLLGSVVAMVLMDKLG--RKALLQWSFFSMAVS  364 (391)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~  364 (391)
                      ..+...+.|-|++..++.+...++.+.... ..+..+|.+++|++.+|++  .|..+....+...++
T Consensus       321 ~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~  387 (539)
T PF03137_consen  321 VSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS  387 (539)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence            777788889999988888777766654443 3467789999999999985  344444444444333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11462 putative transporter; Provisional

Probab=99.66  E-value=1.4e-14  Score=133.84  Aligned_cols=260  Identities=15%  Similarity=0.106  Sum_probs=167.7

Q ss_pred             hHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc----chhhHH-HHHhhHHHHHHHHHHHhhhh------H
Q 016350           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRA-FQLCALPMIIGASISATTRN------L  141 (391)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~-l~~~~~~~~i~~~~~~~~~~------~  141 (391)
                      ....+.+..|++....  |.+..+.-+--++.-|+.|.++||    +||||. ++++.+..+++.+++-..++      .
T Consensus        32 l~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         32 MMFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            3455667789887766  888888888889999999999996    798655 44576777777766654442      3


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHHHhhcCC-ccccchHHHHHHHHHHHHHHHHHHhccccccccc------hhHHHHHHH
Q 016350          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICFWVS  214 (391)
Q Consensus       142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~w~~~f~~~  214 (391)
                      ..+.+.-.+..++.........++..|+.+ +++|.+..++...+..+|..+++.+...+.+..+      +|+....+.
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~  189 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL  189 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            455666667788888888788889999987 7899999999999988887777666443332211      277766666


Q ss_pred             HHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHH
Q 016350          215 IVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (391)
Q Consensus       215 ~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
                      +++.+++.+.. ...+|.++    + +. +                           +.......+..++||.++.....
T Consensus       190 ~ii~~i~~~i~~~~~kE~~~----~-~~-~---------------------------~~~~~~~l~~~~~Nk~~~~l~~~  236 (460)
T PRK11462        190 SVVAFMMLAFCFFTTKERVE----A-PP-T---------------------------TTSMREDLRDIWQNDQWRIVGLL  236 (460)
T ss_pred             HHHHHHHHHHHHhcceeccC----C-Cc-c---------------------------CCCHHHHHHHHhCChHHHHHHHH
Confidence            66555554433 33444321    0 00 0                           00011234556778888766555


Q ss_pred             HHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 016350          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (391)
                      .++.............+|.....+.. ...+.......++.+++.++++++.||+++|+....+.....+..+++
T Consensus       237 ~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~  310 (460)
T PRK11462        237 TIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAM  310 (460)
T ss_pred             HHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            54554444443344445555444322 223345666778888999999999999999988765544444433333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.65  E-value=6.6e-15  Score=131.27  Aligned_cols=289  Identities=19%  Similarity=0.180  Sum_probs=202.5

Q ss_pred             HHHHHHHHhhhhhhcccch-HHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc----chhh-HHHHHhhHHH
Q 016350           55 VATLSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPM  128 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~  128 (391)
                      .-.++-+............ +-.+.+.+|++....  |.+..+--+--++.-|+.|.++||    +||+ +.++.+.+-.
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~   93 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF   93 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence            3333444443444333333 345666788887666  777777777788999999999995    8875 4556677888


Q ss_pred             HHHHHHHHhhhh------HHHHHHHHHHhhhccchhhHHHHHHHhhcCC-ccccchHHHHHHHHHHHHHHHHHHhccccc
Q 016350          129 IIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (391)
Q Consensus       129 ~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (391)
                      ++.+.++-.+++      ....++.-.+.+++.........++..|+.+ ++||.+..+.-..+..+|..+...+.+.+.
T Consensus        94 ~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv  173 (467)
T COG2211          94 AIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLV  173 (467)
T ss_pred             HHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877763      4556677888889888888888888999886 689999999999988888666555544433


Q ss_pred             cccc------hhHHHHHHHHHHHHHHHHHhhc-cccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCc
Q 016350          202 EIAG------WWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGD  274 (391)
Q Consensus       202 ~~~~------~w~~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (391)
                      ...+      +|+..-.+.+++.++..+.+++ ..|.+.    +.++.+                        +..+.+.
T Consensus       174 ~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~----~~~~~~------------------------~~~~~~~  225 (467)
T COG2211         174 KLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV----ETQPTK------------------------TGVKLKL  225 (467)
T ss_pred             HHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC----ccccCc------------------------ccccccH
Confidence            2211      2666666666666655554443 444321    000000                        0001111


Q ss_pred             cccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHH
Q 016350          275 IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALL  354 (391)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  354 (391)
                      ..++..+++||.+....+..++.............+|.+..++...............+.+++.++..++.+|+|+|++.
T Consensus       226 ~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~  305 (467)
T COG2211         226 KDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF  305 (467)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH
Confidence            22334577899998888867666666666666778888888887777777788888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 016350          355 QWSFFSMAVSMAIQVAASS  373 (391)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~  373 (391)
                      .++.++.+++.+++.+.+.
T Consensus       306 ~~~~~~~~i~~~~~~f~~~  324 (467)
T COG2211         306 LIGLLLLAVGYLLLYFTPA  324 (467)
T ss_pred             HHHHHHHHHHHHHHHhhcC
Confidence            9999999999999998873

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.64  E-value=8.5e-15  Score=133.11  Aligned_cols=155  Identities=14%  Similarity=0.187  Sum_probs=126.0

Q ss_pred             chHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016350           72 EPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (391)
Q Consensus        72 ~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (391)
                      ...|. +.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.+..+.....+.......+++.+.+++.+++
T Consensus       237 ~~~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        237 INMPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34554 456788876665  777777777778899999999999999998887776666555555567788888889999


Q ss_pred             hhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhcccc
Q 016350          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (391)
Q Consensus       151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e  230 (391)
                      .+++.|...+....+..|.+|+ +|+++.++.+....+|..+++.+++.+.+..+ |+..|++.++..++..+..++.||
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9988888777777888999875 59999999999999999999999999998877 999999888877777776666654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.64  E-value=5.3e-15  Score=135.27  Aligned_cols=158  Identities=23%  Similarity=0.188  Sum_probs=131.7

Q ss_pred             cchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016350           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (391)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (391)
                      ....|.+.++.|.+..+.  +++.+.+.++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+..++
T Consensus       240 ~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK11551        240 LNWLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            345678888888887766  888999999999999999999999999999988877777777777777788878888888


Q ss_pred             hhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhcccc
Q 016350          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (391)
Q Consensus       151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e  230 (391)
                      .|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+.+..++|...++......++..+..+++.+
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99988888888889999999999999999999999999999999999999887665777777666665555555444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.63  E-value=1.3e-15  Score=139.07  Aligned_cols=160  Identities=13%  Similarity=0.119  Sum_probs=128.2

Q ss_pred             chHHHhHhhhccCcch------hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh----hH
Q 016350           72 EPLESISLDLGFNGNT------LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR----NL  141 (391)
Q Consensus        72 ~~~~~i~~~~~~~~~~------~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~  141 (391)
                      ...|.+.++.|.+++.      ...+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            4456666676654311      2237888888999999999999999999999999999999988877666532    34


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHH-HHHHHHHHHHHHhccccccccc-----hhHHHHHHHH
Q 016350          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG-----WWRICFWVSI  215 (391)
Q Consensus       142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~-----~w~~~f~~~~  215 (391)
                      +.+++.+++.|++.+...+....++.|++|+++|++++++.+ ....+|..+||.++|.+.+..+     +|+..|.+.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            667788999999999888888999999999999999999997 6788999999999999887632     2999998877


Q ss_pred             HHHHHHHHHh-hccccc
Q 016350          216 VPAAILCLAM-VFCAES  231 (391)
Q Consensus       216 ~~~~~~~~~~-~~~~e~  231 (391)
                      +..++..++. ++++|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            7766655544 556665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.63  E-value=1.1e-14  Score=132.84  Aligned_cols=156  Identities=15%  Similarity=0.074  Sum_probs=130.3

Q ss_pred             cchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016350           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (391)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (391)
                      ...+|.+.++.|.+  +.  ++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus       236 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (399)
T PRK05122        236 ATFITLYYAARGWD--GA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL  311 (399)
T ss_pred             HHHHHHHHHHcccc--cc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34455555666652  23  566778888899999999999999999999999999888888888888888888889999


Q ss_pred             hhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhcccc
Q 016350          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (391)
Q Consensus       151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e  230 (391)
                      .|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.++..++..+..+++++
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998888888888899999999999999999999999999989899888888 899999887777776666555544


Q ss_pred             c
Q 016350          231 S  231 (391)
Q Consensus       231 ~  231 (391)
                      +
T Consensus       391 ~  391 (399)
T PRK05122        391 R  391 (399)
T ss_pred             c
Confidence            3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.63  E-value=2.5e-15  Score=135.89  Aligned_cols=147  Identities=18%  Similarity=0.098  Sum_probs=124.6

Q ss_pred             chHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhH--HHHHHHHH
Q 016350           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRF  149 (391)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~  149 (391)
                      ...+.+.++++.++++.  +++.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.++.  ..+++..+
T Consensus       226 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            44566678888776555  788999999999999999999999999999999999888888877776643  33445678


Q ss_pred             HhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHH
Q 016350          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (391)
Q Consensus       150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~  221 (391)
                      +.|++.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..| |++.|.+.++..++.
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence            88888888887778899999999999999999999999999999999999998888 999998877666554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.63  E-value=6.3e-14  Score=126.30  Aligned_cols=226  Identities=15%  Similarity=0.090  Sum_probs=153.0

Q ss_pred             chhhHHHHHHHHhhccCCCCCCCChhHHHhhhcCCcc--cCC----CCCCcchhhHHHHHHHHHHHHhhhhhhcccchHH
Q 016350            2 WGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTE--VEN----TNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLE   75 (391)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (391)
                      +|+++||++..+..+..++++.+..+...+.+.+..+  +..    ..+++..++...+.+.+......-+...+.....
T Consensus       215 k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst  294 (485)
T KOG0569|consen  215 KGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYST  294 (485)
T ss_pred             cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHH
Confidence            6888999999999887655443332221111111111  111    0122233333333444444444444555666778


Q ss_pred             HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh---hHH------HHHH
Q 016350           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NLI------GMLL  146 (391)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~------~l~~  146 (391)
                      .+.++-|++.++.  -+.+....+...+..+++..+.||+|||+.++.+..++.+..++.....   +..      ..++
T Consensus       295 ~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~  372 (485)
T KOG0569|consen  295 SIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA  372 (485)
T ss_pred             HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            8999999988877  5788888888999999999999999999999999999999888776542   111      1233


Q ss_pred             HHHHhhhccchh-hHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHH-H
Q 016350          147 GRFVVGTGMGLG-PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL-A  224 (391)
Q Consensus       147 ~r~l~G~~~g~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~-~  224 (391)
                      +.++..++.+.. -|+..-+.+|.+|++.|+.++++......+...+-...-..+.+..|.  +.|++..+++++..+ .
T Consensus       373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~  450 (485)
T KOG0569|consen  373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYL  450 (485)
T ss_pred             HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHH
Confidence            343333333322 357778899999999999999999999999988888887778777773  667766666666555 4


Q ss_pred             hhccccc
Q 016350          225 MVFCAES  231 (391)
Q Consensus       225 ~~~~~e~  231 (391)
                      +.++||+
T Consensus       451 ~~~lPET  457 (485)
T KOG0569|consen  451 YRYLPET  457 (485)
T ss_pred             HHhCccc
Confidence            5779999

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.63  E-value=2e-15  Score=140.25  Aligned_cols=304  Identities=15%  Similarity=0.193  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      .+.++++..+..++....+...+..+.+.|+++.++.  |++.+.+-++..+...+..+..-|.-|-+.+-.|.++++++
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg  175 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG  175 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence            4556667777888888888889999999999998887  99999999999999999999999998989999999999999


Q ss_pred             HHHHHhh--------------------h--------------------------------hHHHHHHHHHHhhhccchhh
Q 016350          132 ASISATT--------------------R--------------------------------NLIGMLLGRFVVGTGMGLGP  159 (391)
Q Consensus       132 ~~~~~~~--------------------~--------------------------------~~~~l~~~r~l~G~~~g~~~  159 (391)
                      ++++++-                    +                                -+..++++.++.|+|....+
T Consensus       176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~  255 (735)
T KOG3626|consen  176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF  255 (735)
T ss_pred             HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence            9998862                    0                                02256678999999999999


Q ss_pred             HHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc------------------chhHHHHHHHHHHHHHH
Q 016350          160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------------------GWWRICFWVSIVPAAIL  221 (391)
Q Consensus       160 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------------~~w~~~f~~~~~~~~~~  221 (391)
                      +.+.+|+-|...+++-+..+|+......+|.++|.++|+++...+                  |-|+.-|++.+.+.++.
T Consensus       256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998765322                  12677777788888888


Q ss_pred             HHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHh
Q 016350          222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ  301 (391)
Q Consensus       222 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (391)
                      .+.++++|.+.+.   ..++.+ .+..+.....+.   ..++.....+.-.+-+...+++++||.+....+...+-....
T Consensus       336 a~p~f~fPk~lp~---~~~~~~-~~~~~~~k~~~~---~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~  408 (735)
T KOG3626|consen  336 AVPLFFFPKELPK---SQKRKR-ARDLHVLKTESG---GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAI  408 (735)
T ss_pred             HHHHHhCcccCcc---ccccch-hhhhcccccccc---cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            8888888876321   111100 001000000000   000000000000122445677889999998888888888888


Q ss_pred             hhchhhHHHhHHHHHhhcCCChhHHHHHHHH-HHHHHHHHHHHHHhhhC--chHHHHHHHHHHHHH
Q 016350          302 LSGINAIFYFSSSVFKSAGLSSGLANVFVGI-ANLLGSVVAMVLMDKLG--RKALLQWSFFSMAVS  364 (391)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~  364 (391)
                      .+..+++|-|++..++.+...+..+....++ +..+|.+++|+++.|+.  .|.......+...+.
T Consensus       409 ~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~  474 (735)
T KOG3626|consen  409 TGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS  474 (735)
T ss_pred             hhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence            8878888999998888777666665544443 55678899999999975  344444444433333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.62  E-value=2.8e-13  Score=124.17  Aligned_cols=251  Identities=17%  Similarity=0.158  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHh-hHHHHHHHHHHHhh--hhHHHHHHHHHHhhhccchhhHHHHHHH
Q 016350           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC-ALPMIIGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYV  166 (391)
Q Consensus        90 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~-~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i  166 (391)
                      +++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++.+..+.  .+++...+.-++.-++.+...+...+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36778888888999999999999999987776664 44445566666653  3455555556666677888888889999


Q ss_pred             hhcCCcccc--------------------------chHHHHHHHHHHHHHHHHHHhccccccccc-------hhHHHHHH
Q 016350          167 TEVSPPFVR--------------------------GTYGAFIQIATCLGLMGSLLIGIPVKEIAG-------WWRICFWV  213 (391)
Q Consensus       167 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------~w~~~f~~  213 (391)
                      .|..+++++                          ++..+.-.....+|.++..++.-.+....+       .-|..+.+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            999999888                          888888888888887776666544322111       14777877


Q ss_pred             HHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350          214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (391)
Q Consensus       214 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      .++.-++..+ .++++||.|+....+..........+++                       ...++++.+.|+....++
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l-----------------------~~t~k~~~~~~~~~~fLi  288 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL-----------------------WRTFKEIRKLRQLFLFLI  288 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH-----------------------HHHHHHHHhChHHHHHHH
Confidence            7777665544 4566787754211111111111111111                       112344555577777777


Q ss_pred             HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCch--HHHHHHHHHHHH
Q 016350          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAV  363 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~  363 (391)
                      ..+++.-...........|..+.++.+..+.........+.+++|+++.|++.||+|.|  +++.++.+...+
T Consensus       289 a~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~  361 (477)
T PF11700_consen  289 AYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII  361 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            77777766666677777888888888877777788889999999999999999999988  776666555533

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.61  E-value=3.7e-15  Score=136.78  Aligned_cols=140  Identities=12%  Similarity=0.016  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhc
Q 016350           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (391)
Q Consensus        90 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  169 (391)
                      .|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+....++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38889999999999999999999999999999999999999988999999999999999999998888888888899999


Q ss_pred             CCccccchHHHH-HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh-hcccc
Q 016350          170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAE  230 (391)
Q Consensus       170 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~e  230 (391)
                      +|++.|++..+. ++....+|..+++.+.+.+.+..| |+..|.+.++..++..+.. +..++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999887665 677788999999999999999888 9999998777666554444 33433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.60  E-value=3.1e-14  Score=127.45  Aligned_cols=165  Identities=22%  Similarity=0.345  Sum_probs=143.7

Q ss_pred             HHHhhhhhhcccchHHHhHhhh-ccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH-HHHHhhHHHHHHHHHHHh
Q 016350           60 SFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR-AFQLCALPMIIGASISAT  137 (391)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~  137 (391)
                      .+.............|.+.++. |.+..+.  ++..+...++..++.++.+++.||+|||+ .+..+..+..++.+....
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  261 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL  261 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3334444445555667777665 7766665  89999999999999999999999999999 999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHH
Q 016350          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (391)
Q Consensus       138 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~  217 (391)
                      .++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |+..|.+.++.
T Consensus       262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~  340 (352)
T cd06174         262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAAL  340 (352)
T ss_pred             hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998777 89999998888


Q ss_pred             HHHHHHHhhc
Q 016350          218 AAILCLAMVF  227 (391)
Q Consensus       218 ~~~~~~~~~~  227 (391)
                      .++..+..++
T Consensus       341 ~~i~~i~~~~  350 (352)
T cd06174         341 ALLAALLLLL  350 (352)
T ss_pred             HHHHHHHhee
Confidence            8777666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.59  E-value=3.9e-13  Score=116.78  Aligned_cols=282  Identities=17%  Similarity=0.092  Sum_probs=191.3

Q ss_pred             hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch-----hhHHHHH-hhHHHHHHHHHHHhh-----h------
Q 016350           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQL-CALPMIIGASISATT-----R------  139 (391)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~-~~~~~~i~~~~~~~~-----~------  139 (391)
                      +..|+++...-.  +.+.++..+. ....+.+|+.+|+.+     ||..++. |......+..+..++     .      
T Consensus         6 MIvEL~vpA~lv--~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGVPAWLV--ALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             HHHHhccHHHHH--HHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            566777754433  6666666554 357899999999999     8866655 566666655555442     2      


Q ss_pred             --hH-H--HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHH
Q 016350          140 --NL-I--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (391)
Q Consensus       140 --~~-~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~  214 (391)
                        .+ +  ...+...+.|+|.+...+...++++|..|+|+|+++.++......+|.+++..+.+.+.+.+..-|..-.+.
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~  162 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ  162 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence              22 2  334457788999999999999999999999999999999999999999999999888777665334433333


Q ss_pred             HH--HHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350          215 IV--PAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (391)
Q Consensus       215 ~~--~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      ..  +.+...++..+-.|.+.....                           ...++++......+++++.+|+.+..+.
T Consensus       163 ~~a~i~~~l~~ia~wg~E~r~~~~~---------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~  215 (403)
T PF03209_consen  163 GVALIALLLNLIALWGQEPRRSRRA---------------------------AAAERPRPPFREAWRQVWASPQARRFFV  215 (403)
T ss_pred             HHHHHHHHHHHHHHHhcccCCcccc---------------------------cCCCCCCccHHHHHHHHHhCCChhHHHH
Confidence            22  222222223333333110000                           0001122223345667777888888777


Q ss_pred             HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      ..++....++.-...+-.|--++++.+..+...+....+.+..+|....|++.. |.+++++..+++....+++.++.+.
T Consensus       216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            777777776666667777888888888777888889999999999999998876 6777888888888888888887776


Q ss_pred             hccCCCCchHhHHhhhh
Q 016350          372 SSSYIPGSASLYLSVGG  388 (391)
Q Consensus       372 ~~~~~~~~~~~~~~~~g  388 (391)
                      ......+..-....+.|
T Consensus       296 ~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  296 GPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             HhcccchHHHHHHHHHH
Confidence            65544444333333333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.59  E-value=8.7e-13  Score=112.81  Aligned_cols=268  Identities=19%  Similarity=0.207  Sum_probs=167.4

Q ss_pred             cccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q 016350           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (391)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (391)
                      ..+|..-.+.+++|.+++++  +.+....+...++..++.|.++||+|||+.-+..+++.+++++ +-..++++.++++|
T Consensus        52 LQGpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GR  128 (354)
T PF05631_consen   52 LQGPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGR  128 (354)
T ss_pred             hhcchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHH
Confidence            34666666778899988887  7888888889999999999999999999999999999998886 45668999999999


Q ss_pred             HHhhhccchhhHHHHHHH-hhcC----CccccchHHHHHH-HHHHHHHHHHHHhccccccccch-hHHHHHHHHHHHHHH
Q 016350          149 FVVGTGMGLGPTVAALYV-TEVS----PPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAIL  221 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~-w~~~f~~~~~~~~~~  221 (391)
                      ++.|++....+...-++. .|.-    |++..+...+... ..+++-.+++.+++-.+.+..+. -..+|....+..++.
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            999999999998887764 4542    2222222222222 22333345555555555544331 367888777666665


Q ss_pred             HHHhh-ccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHH
Q 016350          222 CLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (391)
Q Consensus       222 ~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (391)
                      .+... ..+|++..   ..+..+..+..                          ...++.+.++|+.+.+-+...++-..
T Consensus       209 ~~~I~~~W~ENyg~---~~~~~~~~~~~--------------------------~~a~~~i~~d~ril~LG~~qslFE~s  259 (354)
T PF05631_consen  209 AVLILKTWPENYGD---TSSSSSLSGSF--------------------------REAWRAILSDPRILLLGLIQSLFEGS  259 (354)
T ss_pred             HHHHHhcccccCCC---cccccchHHHH--------------------------HHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            55443 34554210   00011100000                          11233455667777666666665555


Q ss_pred             hhhchhhHHHhHHHHH-hhcCCChhHHHHHHHHHHHHHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHHH
Q 016350          301 QLSGINAIFYFSSSVF-KSAGLSSGLANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       301 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      .+....   .+.|..- +.....-|+++..+.++.++|+.+..++.. +......+...+.+.++++.+..+.
T Consensus       260 my~FVf---lWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~pv~~  329 (354)
T PF05631_consen  260 MYLFVF---LWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAIPVVT  329 (354)
T ss_pred             HHHhee---eeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            444322   2233222 122455788999999999999988876554 4444445555555555555554444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.58  E-value=1.6e-13  Score=121.50  Aligned_cols=174  Identities=18%  Similarity=0.232  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHhhhhhhcc-cchHHHhHhhhc----cCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhH
Q 016350           53 VLVATLSSFLFGYHLGVV-NEPLESISLDLG----FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCAL  126 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~  126 (391)
                      +..+...-+-..+...-+ .++.-++..+++    +++++.  .-+.+.|.--.-+..+++||++|| +|+|+++..|.+
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai  100 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI  100 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            334444444444433322 233445555555    887776  455666665556889999999999 899999999999


Q ss_pred             HHHHHHHHHHhhh--hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc--ccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350          127 PMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       127 ~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      +..+|.++.+.++  +...+.++-++.++|.|..-+....++.|.+|++  +|-...++++++.++|++++|++.+++.+
T Consensus       101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            9999999999985  7889999999999999999999999999999864  36778889999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccc
Q 016350          203 IAGWWRICFWVSIVPAAILCLAMVFCA  229 (391)
Q Consensus       203 ~~~~w~~~f~~~~~~~~~~~~~~~~~~  229 (391)
                      ..+ |+..|...++-..+.++.++..+
T Consensus       181 ~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         181 NYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             hhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            999 99999998887777666655443

>PRK12382 putative transporter; Provisional

Probab=99.58  E-value=5.3e-14  Score=128.03  Aligned_cols=152  Identities=16%  Similarity=0.150  Sum_probs=128.8

Q ss_pred             ccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH
Q 016350           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (391)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~  149 (391)
                      .....|.+.++.+.+  +.  ++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.+
T Consensus       235 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (392)
T PRK12382        235 IGTFVSLYFASKGWA--MA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHhcCCc--hh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            344555566666654  23  56667778888899999999999999999999999998888888888888888888999


Q ss_pred             HhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhh
Q 016350          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (391)
Q Consensus       150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~  226 (391)
                      +.|++.+...+.....+.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|.+.+...++..+..+
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888999999999999999999999999999999999999888 99999988777766655543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.57  E-value=8.3e-14  Score=126.13  Aligned_cols=162  Identities=12%  Similarity=-0.005  Sum_probs=135.5

Q ss_pred             HHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh
Q 016350           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (391)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  137 (391)
                      +..++............|.+.+|+|.++++.  |++.+...++..++.++.+++.||+|+|+.+..+.+..++..+..++
T Consensus       212 ~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~  289 (382)
T TIGR00902       212 AAVCLIQGAHAAYYGFSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA  289 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3334334444444556677778889887766  88888899999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHH-HHHHHHHHHHHHhccccccccchhHHHHHHHHH
Q 016350          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (391)
Q Consensus       138 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~  216 (391)
                      ++|.+.+++.++++|+..+...+....++.+. |+++|+++.++++ ...++|..+++.++|.+.+..+ + ..|++.+.
T Consensus       290 ~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~  366 (382)
T TIGR00902       290 IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAI  366 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHH
Confidence            99999999999999999999999999999998 9999999999986 5788999999999999999887 5 55666666


Q ss_pred             HHHHHHHH
Q 016350          217 PAAILCLA  224 (391)
Q Consensus       217 ~~~~~~~~  224 (391)
                      +.++..+.
T Consensus       367 ~~~~~~~~  374 (382)
T TIGR00902       367 IAAAAFFL  374 (382)
T ss_pred             HHHHHHHH
Confidence            55554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.56  E-value=1.1e-13  Score=125.24  Aligned_cols=150  Identities=19%  Similarity=0.279  Sum_probs=124.3

Q ss_pred             HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 016350           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGM  155 (391)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~  155 (391)
                      .+.+++|.++.+.  +++.+.......++.++.|++.||+|||+++..+.++..+......+.++.+.+++.+++.|++.
T Consensus       225 ~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       225 LIIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI  302 (375)
T ss_pred             HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788877665  77777777777788899999999999999998887776666666667788888888899999999


Q ss_pred             chhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhccc
Q 016350          156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCA  229 (391)
Q Consensus       156 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~  229 (391)
                      +...+....++.|..|+ +++++.++.+....+|..++|.+++.+.+..+ |+..|++.++..++..+...+++
T Consensus       303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheec
Confidence            98888888899998875 56799999999999999999999999988888 89999988887777666665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.55  E-value=2.6e-13  Score=127.41  Aligned_cols=162  Identities=12%  Similarity=0.035  Sum_probs=108.0

Q ss_pred             ccchHHHhHhhhccCcchhH---------HHH-HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh
Q 016350           70 VNEPLESISLDLGFNGNTLA---------EGL-VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (391)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~---------~~~-~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  139 (391)
                      .....|.+.++.|.+..+..         ... ...+..++..++.++.++++||+|||++++.+..+.+++.++.++..
T Consensus       307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~  386 (502)
T TIGR00887       307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY  386 (502)
T ss_pred             cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            44457888888888654210         001 12334455667888999999999999999988888777766655432


Q ss_pred             h----HHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc---------h
Q 016350          140 N----LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---------W  206 (391)
Q Consensus       140 ~----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---------~  206 (391)
                      +    ...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+..+         +
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (502)
T TIGR00887       387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW  466 (502)
T ss_pred             HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence            1    11111111112222222334556778999999999999999999999999999999988876321         1


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccc
Q 016350          207 WRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       207 w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      +...|++.++..++..+..+++||+
T Consensus       467 ~~~~~~i~~~~~~~~~i~~~~lpEt  491 (502)
T TIGR00887       467 MGHVLEIFALFMFLGILFTLLIPET  491 (502)
T ss_pred             chHHHHHHHHHHHHHHHHheEeccC
Confidence            4566777666666665556778987

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.55  E-value=4.2e-14  Score=129.48  Aligned_cols=158  Identities=15%  Similarity=0.133  Sum_probs=130.0

Q ss_pred             cccchHHHhHhhhccCcchh--HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHH
Q 016350           69 VVNEPLESISLDLGFNGNTL--AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (391)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~--~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~  146 (391)
                      ...+.++.+.++.+.+.++.  ..+.+.+++.++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI  316 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            34455666656543332221  2356667777888899999999999999999999998888888887788888888889


Q ss_pred             HHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhh
Q 016350          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (391)
Q Consensus       147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~  226 (391)
                      .+++.|++.+...+....++.+..|+++||+.+++.+....+|..+||.+++.+.+..+ |++.|++.++..++..+..+
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888 89999998877777665554


Q ss_pred             c
Q 016350          227 F  227 (391)
Q Consensus       227 ~  227 (391)
                      +
T Consensus       396 ~  396 (408)
T PRK09874        396 N  396 (408)
T ss_pred             H
Confidence            3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.55  E-value=5.9e-14  Score=127.73  Aligned_cols=159  Identities=18%  Similarity=0.130  Sum_probs=118.8

Q ss_pred             HHHHHhhhhhhcccchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH--HH
Q 016350           58 LSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA--SI  134 (391)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~--~~  134 (391)
                      ...+.............|.+. +++|.+.++.  ++..+...++..++.++.|+++||+|||+.+..+..+..+..  +.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  303 (394)
T TIGR00883       226 GLVIATTTTFYLITTYLPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLL  303 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            333333334444455666665 6678877666  788888899999999999999999999998876555444333  22


Q ss_pred             HHh--hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHH-HHHHHHHHHHHHHhccccccccchhHHHH
Q 016350          135 SAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (391)
Q Consensus       135 ~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  211 (391)
                      ..+  .++.+.+++..++.|++.+...+...+++.|.+|+++|+++.++. +.+..+|..++|.+++.+.+..+.|++.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~  383 (394)
T TIGR00883       304 MALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG  383 (394)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence            222  246667777889999988889899999999999999999999984 56677889999999999988776577776


Q ss_pred             HHHHHHH
Q 016350          212 WVSIVPA  218 (391)
Q Consensus       212 ~~~~~~~  218 (391)
                      +......
T Consensus       384 ~~~~~~~  390 (394)
T TIGR00883       384 YYLAALA  390 (394)
T ss_pred             HHHHHHH
Confidence            6655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.55  E-value=9e-14  Score=128.60  Aligned_cols=164  Identities=10%  Similarity=0.049  Sum_probs=129.3

Q ss_pred             HHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc--chhhHHHHH--hhHHHHHHHH
Q 016350           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG--VGRRRAFQL--CALPMIIGAS  133 (391)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr--~Grr~~l~~--~~~~~~i~~~  133 (391)
                      ...++...........+|.+.+++|.+..+.  +++.++..++..++.++.|+++||  +++|+....  +.++.+++.+
T Consensus       248 ~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~l  325 (455)
T TIGR00892       248 SGNVIMFLGFFAPIIFLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHL  325 (455)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444456777788888877666  899999999999999999999997  334433333  3444455556


Q ss_pred             HHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                      +...+++++.+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|..+||.+++.+.+..+.|++.|++
T Consensus       326 l~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~  405 (455)
T TIGR00892       326 LCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA  405 (455)
T ss_pred             HHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence            66778899999999999999999999999999999999999999999999999999999999999998876448999988


Q ss_pred             HHHHHHHHHH
Q 016350          214 SIVPAAILCL  223 (391)
Q Consensus       214 ~~~~~~~~~~  223 (391)
                      .++..++..+
T Consensus       406 ~~~~~li~~~  415 (455)
T TIGR00892       406 SGSIVVSAGL  415 (455)
T ss_pred             hhHHHHHHHH
Confidence            7776655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.55  E-value=1.3e-13  Score=128.20  Aligned_cols=171  Identities=16%  Similarity=0.124  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHh-HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      +..+++..+.............|.+ .+++|.+..+.  ++..+.+.++..++.+++|+++||+|||+.+.....+..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            3444444444444444455567754 46789887776  78888899999999999999999999998876655444433


Q ss_pred             HHH--HHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHH-HHHHHHHhcccccc------
Q 016350          132 ASI--SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKE------  202 (391)
Q Consensus       132 ~~~--~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~------  202 (391)
                      ..+  ....++...+.+.+++.|++.............|.+|+++||++.|+.+....+ |..++|.+.|.+.+      
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~  417 (467)
T PRK09556        338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT  417 (467)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence            322  233456666778888888654443333345677999999999999999988786 77899999998888      


Q ss_pred             ------ccchhHHHHHHHHHHHHHHHHHhh
Q 016350          203 ------IAGWWRICFWVSIVPAAILCLAMV  226 (391)
Q Consensus       203 ------~~~~w~~~f~~~~~~~~~~~~~~~  226 (391)
                            ..+ |+..|.+..+..++..+..+
T Consensus       418 ~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        418 PIFGYTLTG-WAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             ccccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence                  456 99999887666666555444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.54  E-value=4.7e-13  Score=125.19  Aligned_cols=160  Identities=19%  Similarity=0.086  Sum_probs=115.0

Q ss_pred             cccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh--hH--HHH
Q 016350           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NL--IGM  144 (391)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~--~~l  144 (391)
                      ......|.+.++.|.+.+..  ++......+...++.++.|+++||+|||++++.+..+.+++.++.+...  +.  ...
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            33445688888899876655  5666667788889999999999999999999999999888887765432  11  122


Q ss_pred             HHHHHHhhhccch-hhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcc------ccccccchhHHHHHHHHHH
Q 016350          145 LLGRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI------PVKEIAGWWRICFWVSIVP  217 (391)
Q Consensus       145 ~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------~l~~~~~~w~~~f~~~~~~  217 (391)
                      ..+-++.+.+.+. ..+....++.|.+|+++|++++++......+|..+++.+.+      ++.+..+ |++.|++.++.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~  445 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM  445 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHH
Confidence            2233344443333 23567889999999999999999999998888888765544      3345566 78888887766


Q ss_pred             HHHHHHHh-hccccc
Q 016350          218 AAILCLAM-VFCAES  231 (391)
Q Consensus       218 ~~~~~~~~-~~~~e~  231 (391)
                      .++..+.. ++.||+
T Consensus       446 ~~~~~~~~~~~~~e~  460 (479)
T PRK10077        446 GVLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHHhccccC
Confidence            66655544 456666

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.54  E-value=1.4e-13  Score=128.68  Aligned_cols=176  Identities=15%  Similarity=0.012  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +....+..+.............|.+.+++|.+..+.  ++......++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            333334444433344445556788888999887555  788888889999999999999999999999999988888877


Q ss_pred             HHHHhh-----h------hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc
Q 016350          133 SISATT-----R------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (391)
Q Consensus       133 ~~~~~~-----~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (391)
                      ++.++.     +      +...+....++.+.......+....++.|.+|+++|++++++.+....+|..+++.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766521     1      23333333333332222333556677899999999999999999999999999999999888


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHh-hccccc
Q 016350          202 EIAGWWRICFWVSIVPAAILCLAM-VFCAES  231 (391)
Q Consensus       202 ~~~~~w~~~f~~~~~~~~~~~~~~-~~~~e~  231 (391)
                      +..+ |++.|++.++.+++..+.. ++.||+
T Consensus       444 ~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       444 ESIG-VGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HhcC-ccceehhHHHHHHHHHHHHheecccC
Confidence            8777 8999988877776665554 445665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.52  E-value=5.4e-13  Score=121.25  Aligned_cols=162  Identities=17%  Similarity=0.154  Sum_probs=124.8

Q ss_pred             hhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh-hHHHH
Q 016350           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLIGM  144 (391)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l  144 (391)
                      .........|.+.+++|.+.++.  ++..+.+.++..++.+..|++.||+|||+.+..+..+..++.++....+ +...+
T Consensus       220 ~~~~~~~~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  297 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL  297 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            33334456777777888887766  8999999999999999999999999999999988887777766554323 32222


Q ss_pred             HHHHHHhhhccchhhHHHHHHHhhcCC-ccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHH
Q 016350          145 LLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (391)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~  223 (391)
                        .-++.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+++.+..|.|...|.+.++..+...+
T Consensus       298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence              2346688888888877777777775 5789999999999999999999999999999877688888887766666554


Q ss_pred             H-hhccccc
Q 016350          224 A-MVFCAES  231 (391)
Q Consensus       224 ~-~~~~~e~  231 (391)
                      . ..+.||+
T Consensus       376 ~~~~~~~~~  384 (393)
T PRK09705        376 ITLRFAPAR  384 (393)
T ss_pred             HHHHhcccc
Confidence            4 4556665

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.52  E-value=7.3e-13  Score=120.12  Aligned_cols=310  Identities=17%  Similarity=0.201  Sum_probs=199.6

Q ss_pred             HHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHH----HHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC----LGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~----~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i  130 (391)
                      ...+-.+..++......+..+.....++.+....+ +......    .+...+.++..|.++||||||..+....+...+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence            33444445555555555566666666665443332 4444444    567788999999999999999999999999888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhccc--hhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          131 GASISATTRNLIGMLLGRFVVGTGMG--LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       131 ~~~~~~~~~~~~~l~~~r~l~G~~~g--~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      ..+...+.. ++.+ +   +.|+..+  .......++++|....++|....|+.+.....+..++|.+++.+....+ .-
T Consensus       105 ~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-~a  178 (463)
T KOG2816|consen  105 PALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-IA  178 (463)
T ss_pred             hHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-ch
Confidence            888777766 3333 3   5554433  3456778899999999999999999999999999999999999988877 67


Q ss_pred             HHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccch
Q 016350          209 ICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (391)
Q Consensus       209 ~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (391)
                      .+|.+..+..++..+.. .++||+-.    +++.++  ...+.........          ....+......+.-.+|..
T Consensus       179 ~~f~ia~~~~~~~~~y~~~~l~Esl~----~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~r~~  242 (463)
T KOG2816|consen  179 LVFLIAAASGILSLLYMLLFLPESLQ----EKERSD--ATLRELTPGSLDS----------SHVADAFQSLTKVGPDRLL  242 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccC----cccccc--ccccccCCCcccc----------hhhhhhhhhhcccCCCccc
Confidence            88888777777765544 66888732    111110  0000000000000          0000111111111123334


Q ss_pred             hHHHHHHHHHHHHhhhchh-hHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH-HHHhhhCchHHHHHHHHHHHHHH
Q 016350          288 RVVFIGSTLFALQQLSGIN-AIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAM-VLMDKLGRKALLQWSFFSMAVSM  365 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~  365 (391)
                      ..+.+..++.......... ..++|+...++....+.+.......+...++.++.. .+...++.|+.+..|...-.+..
T Consensus       243 l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~  322 (463)
T KOG2816|consen  243 LLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQL  322 (463)
T ss_pred             hHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHH
Confidence            4434444444333333223 446666666676666677777777788888877766 67777888888889999999999


Q ss_pred             HHHHHHhccCCCCchHhHHhhh
Q 016350          366 AIQVAASSSYIPGSASLYLSVG  387 (391)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~  387 (391)
                      +++.+....+..+....+..+.
T Consensus       323 ~~~af~~~~w~~~~~~v~~~~~  344 (463)
T KOG2816|consen  323 LLFAFATETWMMFAAGVVVALA  344 (463)
T ss_pred             HHHHHhccchhhhHHHHHHHhh
Confidence            9999998887666555544443

>PRK03699 putative transporter; Provisional

Probab=99.52  E-value=3e-13  Score=123.02  Aligned_cols=168  Identities=12%  Similarity=0.065  Sum_probs=132.4

Q ss_pred             HHHHhhhhhhcccchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh
Q 016350           59 SSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (391)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  137 (391)
                      ..++.......+....|.+. +++|.+.++.  +++.+.+.++..++.+..|+++||+|||+++.....+..+...+...
T Consensus       213 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~  290 (394)
T PRK03699        213 AALLYILAQLTFISWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            33333333333445677666 5679887776  88899999999999999999999999999998888777777777777


Q ss_pred             hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHH
Q 016350          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (391)
Q Consensus       138 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~  217 (391)
                      .++...+.+..++.|++.+..++...++..|..| +++++..+.......+|..++|.+.+.+.+..+ |+..+++.++.
T Consensus       291 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~  368 (394)
T PRK03699        291 TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGL  368 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHH
Confidence            7787777778889999888888888888888775 456788888888899999999999999999888 89998887777


Q ss_pred             HHHHHHHhhcccc
Q 016350          218 AAILCLAMVFCAE  230 (391)
Q Consensus       218 ~~~~~~~~~~~~e  230 (391)
                      .++..+....+++
T Consensus       369 ~~~~~~~~~~~~~  381 (394)
T PRK03699        369 YAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            7666555555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.51  E-value=3.8e-13  Score=121.84  Aligned_cols=150  Identities=13%  Similarity=0.120  Sum_probs=121.9

Q ss_pred             chHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 016350           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (391)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  151 (391)
                      ..+|.+.++.|.+.++.  ++..+.+.++..+++++.|++.||+|+|+++..+..+..++.+...  + ........++.
T Consensus       221 ~~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence            45677778888876665  8888899999999999999999999999999888888777665443  2 23344567788


Q ss_pred             hhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhc
Q 016350          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (391)
Q Consensus       152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~  227 (391)
                      |++.+...|.....+.|..|+++++...+..+...++|..+||.+++.+.++.+ |++.|.+.+...++..+..+.
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHh
Confidence            887777888899999999998888888888888999999999999999999888 899998877777665554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.51  E-value=1.8e-13  Score=124.62  Aligned_cols=170  Identities=19%  Similarity=0.152  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH--HHH------H
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR--AFQ------L  123 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~l~------~  123 (391)
                      +....+..+.............|.+. +++|.+..+.  +++.+...++..++.++.|+++||+|||+  ...      .
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (399)
T TIGR00893       217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII  294 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence            33444444555555555555666554 5578776665  88899999999999999999999999996  111      1


Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc
Q 016350          124 CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       124 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (391)
                      +.++..+........++....+....+.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~  373 (399)
T TIGR00893       295 AGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT  373 (399)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence            111112222222223344444444455555555 7788899999999999999999999999999999999999999987


Q ss_pred             cchhHHHHHHHHHHHHHHHHHh
Q 016350          204 AGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                      .+.|+..|++.++..++..+..
T Consensus       374 ~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       374 TGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             CCchhHHHHHHHHHHHHHHHHH
Confidence            7657888888777666655444

>PRK09952 shikimate transporter; Provisional

Probab=99.51  E-value=5.2e-13  Score=123.02  Aligned_cols=158  Identities=15%  Similarity=0.100  Sum_probs=113.6

Q ss_pred             chHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh---h-hhHHHHHH
Q 016350           72 EPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---T-RNLIGMLL  146 (391)
Q Consensus        72 ~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~-~~~~~l~~  146 (391)
                      ...|. +.+++|.+.+..  ..+.....+...++.++.|+++||+|||++++.+.++..++.+....   . ++...+++
T Consensus       271 ~~~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T PRK09952        271 AFALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF  348 (438)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            34444 456678776543  34445556666788899999999999999998887766555443322   1 23444455


Q ss_pred             HHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHH-HHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHHHHHH
Q 016350          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~-~~w~~~f~~~~~~~~~~~~~  224 (391)
                      ..++.|++.+...+...+++.|.+|++.|+.+.++.+ .+..+|..++|.+.+.+.+.. +.|+..+.+.++..++..+.
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~  428 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            6677788888888888899999999999999988854 445588899999999887743 33888888777777776666


Q ss_pred             hhccccc
Q 016350          225 MVFCAES  231 (391)
Q Consensus       225 ~~~~~e~  231 (391)
                      .+..+|+
T Consensus       429 ~~~~~~~  435 (438)
T PRK09952        429 ALLMKDN  435 (438)
T ss_pred             HHHcccc
Confidence            6666654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.50  E-value=2.7e-13  Score=123.95  Aligned_cols=140  Identities=21%  Similarity=0.179  Sum_probs=112.1

Q ss_pred             chHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHH-HHHhhhhHHHHHHHHH
Q 016350           72 EPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLGRF  149 (391)
Q Consensus        72 ~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~l~~~r~  149 (391)
                      ...|. +.+++|.+.++.  +++.+.+.++..++.++.|++.||+|||+.+..+..+..+..+ .....++.+.+.+..+
T Consensus       259 ~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF  336 (405)
T ss_pred             hhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            34454 445688877766  8899999999999999999999999999998888776533332 3334456666677777


Q ss_pred             HhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                      +.|+..+...+....++.|.+|+++|++++|+.+....+|..++|++++.+.+..|.|+..+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            7787777777788889999999999999999999999999999999999999887756665544

>TIGR00895 2A0115 benzoate transport

Probab=99.49  E-value=4.9e-13  Score=121.91  Aligned_cols=134  Identities=19%  Similarity=0.174  Sum_probs=108.2

Q ss_pred             hhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 016350           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (391)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l  144 (391)
                      ..........|.+.+++|.+.++.  ++..+...++..++.++.|+++||+|||+.+...........++....++...+
T Consensus       264 ~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (398)
T TIGR00895       264 VGVYFLTNWLPKLMVELGFSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLL  341 (398)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence            333344556778888889887666  788999999999999999999999999955544444333333333335677777


Q ss_pred             HHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccc
Q 016350          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (391)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (391)
                      ++..++.|++.+...+...+++.|.+|+++|+++.|+......+|..++|.++|.+
T Consensus       342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            88899999999999999999999999999999999999999999999999998865

>TIGR00897 2A0118 polyol permease family

Probab=99.47  E-value=7.6e-13  Score=120.73  Aligned_cols=157  Identities=12%  Similarity=0.069  Sum_probs=119.1

Q ss_pred             hhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH-HhhHHHHHHHHHHHh-----hh
Q 016350           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISAT-----TR  139 (391)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~-----~~  139 (391)
                      .........|.+.+++|.+.++.  +++.+.+.++..++.+..|+++||+|||+.+. .+.+..+++.+....     .+
T Consensus       237 ~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  314 (402)
T TIGR00897       237 GLFGFAVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH  314 (402)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            33334556788888899887766  78888889999999999999999999988764 333334443333322     24


Q ss_pred             hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016350          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (391)
Q Consensus       140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~  219 (391)
                      +.+..++..++.|++.+...+. ...+.|.. +++|+++.|+.+....+|..++|.+++.+.+..| |+..|++.++..+
T Consensus       315 ~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~  391 (402)
T TIGR00897       315 SFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYV  391 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHH
Confidence            5667777888899888776544 45667765 4689999999999999999999999999999888 8899888877776


Q ss_pred             HHHHHhhc
Q 016350          220 ILCLAMVF  227 (391)
Q Consensus       220 ~~~~~~~~  227 (391)
                      +..+...|
T Consensus       392 i~~~~~~~  399 (402)
T TIGR00897       392 VSAFLTAF  399 (402)
T ss_pred             HHHHHHHH
Confidence            66555544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.47  E-value=5.3e-13  Score=122.45  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=132.3

Q ss_pred             cchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH
Q 016350           71 NEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (391)
Q Consensus        71 ~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~  149 (391)
                      ....|.+.++ +|.+....  |++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.....++.+
T Consensus       243 ~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHhhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            4456767666 88876665  89999999999999999999999988888888888888888888888888888888899


Q ss_pred             HhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHH-HHHHhhcc
Q 016350          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LCLAMVFC  228 (391)
Q Consensus       150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~-~~~~~~~~  228 (391)
                      +.|++.+...+...+++.|..|++.||++.++++....+|..+|+.+.+.+.+..+ ++..+...+...++ ..+....+
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence            99998888888888899999999999999999999999999999999999999887 67777765555444 44444556


Q ss_pred             ccc
Q 016350          229 AES  231 (391)
Q Consensus       229 ~e~  231 (391)
                      +|.
T Consensus       400 ~~~  402 (417)
T PRK10489        400 GEL  402 (417)
T ss_pred             ccc
Confidence            665

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.47  E-value=4.5e-13  Score=125.88  Aligned_cols=143  Identities=16%  Similarity=0.071  Sum_probs=111.4

Q ss_pred             cchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh--hhHHHHHHH
Q 016350           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLG  147 (391)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~  147 (391)
                      ...+|.+. +++|.+..+.  +++.+.+.++..++.++.|+++||+|||++++.+.++..++.+.....  .+.+.+.+.
T Consensus       295 ~~~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            45677776 5888887766  899999999999999999999999999999988877766665544333  344444455


Q ss_pred             HHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHH
Q 016350          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (391)
Q Consensus       148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~  216 (391)
                      .++.+.......+....++.|.+|+++|++++++.+....+|..++|.+++.+.+..+ |+..+...+.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~  440 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSF  440 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHH
Confidence            5554443333445666788999999999999999999999999999999999999888 7877765443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.46  E-value=3.1e-12  Score=111.00  Aligned_cols=269  Identities=13%  Similarity=0.068  Sum_probs=179.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH-hhHHHHHHHHHHHhhhh--H-HHHHHHHHHhhhccchhhHH
Q 016350           86 NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASISATTRN--L-IGMLLGRFVVGTGMGLGPTV  161 (391)
Q Consensus        86 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~  161 (391)
                      ++..++...++..+..++..|+.|.++|+.|+||..+. ...+..++.++..++++  + +..++.-.+..++.....+.
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            33445788888889999999999999999997766555 45555556666666654  4 44455678888998999889


Q ss_pred             HHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhc------c----ccc--------cccchhHHHHHHHHHHHHHHHH
Q 016350          162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG------I----PVK--------EIAGWWRICFWVSIVPAAILCL  223 (391)
Q Consensus       162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~------~----~l~--------~~~~~w~~~f~~~~~~~~~~~~  223 (391)
                      ..+++.+..++++-++..+.-.....+|..+.-++.      +    ...        +... =|..+.+.++..++..+
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~i  214 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFAL  214 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHh
Confidence            999999999988877777665555555544443331      1    000        1122 57788887777776655


Q ss_pred             Hh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhh
Q 016350          224 AM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (391)
Q Consensus       224 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (391)
                      -. +..++.++-.  ....+...+..+++                       ..+++++.+.++.....+..+++.-...
T Consensus       215 Pm~~~v~~~~~~~--~~~~~~l~~g~k~L-----------------------~~t~k~i~~~~~i~~FLiA~~~~~DGv~  269 (438)
T COG2270         215 PMILNVHDAEKIS--SPPPTALRNGFKEL-----------------------KSTFKEIRGRKNLVLFLIARFFYIDGVN  269 (438)
T ss_pred             HHHhccccccccc--ccchHHHHHHHHHH-----------------------HHHHHHHhcccchHHHHHHHHHHHhhHH
Confidence            44 4455443200  00001111111111                       2234555666777766666666665555


Q ss_pred             hchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhccCCCCch
Q 016350          303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (391)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (391)
                      ........|....++.+..+.........+..++|+++.|++.||+|.|+++.++.++..+.++...+...+...+..
T Consensus       270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~  347 (438)
T COG2270         270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWIL  347 (438)
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHH
Confidence            555566667776777777777778888899999999999999999999999999988888888777766664444333

>PRK03545 putative arabinose transporter; Provisional

Probab=99.46  E-value=4e-12  Score=115.60  Aligned_cols=147  Identities=13%  Similarity=0.064  Sum_probs=117.5

Q ss_pred             HHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHH-HHHhhhhHHHHHHHHHHhhh
Q 016350           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLGRFVVGT  153 (391)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~l~~~r~l~G~  153 (391)
                      |.+.+++|.+.++.  +++.+.+.++..++.++.|++.||+|||+... +..+..++.. +....++.+.++++.++.|+
T Consensus       230 ~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~  306 (390)
T PRK03545        230 PFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGI  306 (390)
T ss_pred             HHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            44555578877766  88889999999999999999999999887544 4444444433 34556778888888999999


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhh
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~  226 (391)
                      +.+...+.....+.|..| ++|++++++++....+|..+|++++|.+.+..+ ++..|++.+++.++..+...
T Consensus       307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        307 AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHH
Confidence            887777777778888876 678999999999999999999999999999998 89999988877776655543

>TIGR00898 2A0119 cation transport protein

Probab=99.45  E-value=2e-12  Score=121.75  Aligned_cols=135  Identities=13%  Similarity=0.014  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhH--HHHHHHHHHhhhccchhhHHHHHHHhhcCC
Q 016350           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (391)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  171 (391)
                      .....+....+.++.+++.||+|||+++..+.++.+++.++..+.++.  +..++.-++.+++.+..++....+..|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            444556677889999999999999999999999999888887776543  445556677777778888888899999999


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhccccc
Q 016350          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       172 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      ++.|++++|+.+....+|.+++|.+.+ +.+ .+ +...+.+.+...++..+..+++||+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            999999999999999999999999988 433 33 5677777777777777777788887

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.45  E-value=2.8e-12  Score=116.23  Aligned_cols=148  Identities=14%  Similarity=0.068  Sum_probs=121.7

Q ss_pred             cchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016350           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (391)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (391)
                      ....|.+.+|.|.+.++.  |...+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+.+++.+.+++..++
T Consensus       225 ~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (382)
T PRK11128        225 YGFSAIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQIL  302 (382)
T ss_pred             HHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            344566667888876665  888888888889999999999999999999999999999988888889999999999999


Q ss_pred             hhhccchhhHHHHHHHhhcCCccccchHHHHHH-HHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHH
Q 016350          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (391)
Q Consensus       151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~  223 (391)
                      .|++.+...+....++.+. +++++++..+..+ ....+|..+||.++|.+.+..+ + ..|+..+...++.++
T Consensus       303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence            9999999888888888887 5666788888886 5667788999999999999887 5 455555555554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=6.8e-12  Score=116.27  Aligned_cols=168  Identities=17%  Similarity=0.132  Sum_probs=110.2

Q ss_pred             HHHHHHHhhhhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhhHHHH-HhhHHHHHH
Q 016350           56 ATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQ-LCALPMIIG  131 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~-~~~~~~~i~  131 (391)
                      ..+..+............+|.+.++ .|.+.++.  ++....+.++..++.++.|+++||+  |||+... ....+..++
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~  335 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA  335 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            3333333333333344567776655 68876666  7888888899999999999999999  5554322 222333333


Q ss_pred             HHHHHh--hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHH-HHHHhccccccccchhH
Q 016350          132 ASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM-GSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       132 ~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~w~  208 (391)
                      .+...+  ..+.....++.++.|.+..........+..|.+|+++||++.|+.+....+|.. .+|.+.+.+.+..| |+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~  414 (452)
T PRK11273        336 TIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WD  414 (452)
T ss_pred             HHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-ch
Confidence            322222  234444445555555543333333345678999999999999999888777754 57999999999888 89


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 016350          209 ICFWVSIVPAAILCLAMV  226 (391)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~  226 (391)
                      ..|++.+..+++.++...
T Consensus       415 ~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        415 GGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999887776666655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.39  E-value=1.3e-11  Score=113.21  Aligned_cols=179  Identities=16%  Similarity=0.147  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHhhhhhhcccch-HHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhh--HHHHHhhHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALP  127 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~  127 (391)
                      +.+....++.++..-..+.+... ...-.+++|++..+.  ..+.-+..+...+|++++|++.||+|.|  ++++.+++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL  358 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            44445555555444333333333 444555899988876  5666667788899999999999999999  899999888


Q ss_pred             HHHHHHHHHh--------hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccc
Q 016350          128 MIIGASISAT--------TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (391)
Q Consensus       128 ~~i~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  199 (391)
                      +.+..+...+        .++-+.+.+.-++.|+..|..++...++.+|+.|+++.+..+|++....-....+||++-+.
T Consensus       359 ~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  359 WIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776666655        67788899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhccccc
Q 016350          200 VKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       200 l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      +.+..+.-|+.+....++.++.+++.++++.+
T Consensus       439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  439 ITDATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            98877767888887777777777766666554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.38  E-value=1.1e-11  Score=114.25  Aligned_cols=168  Identities=22%  Similarity=0.185  Sum_probs=111.2

Q ss_pred             HHHHHHHhhhhhhcccchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--hh-hHHHHHhhHHHH--
Q 016350           56 ATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GR-RRAFQLCALPMI--  129 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Gr-r~~l~~~~~~~~--  129 (391)
                      +.+..+........+...+|.+. +++|.+..+.  ++..+.+.++..++.++.|+++||+  ++ |+..........  
T Consensus       248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~  325 (434)
T PRK11663        248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTA--NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS  325 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence            33333443333444445666666 6678887766  7888999999999999999999999  33 332222111111  


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (391)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  209 (391)
                      ...+......+...+.+..+..|++...........+.|.+|+++|++++|+.+....+|..++|.+.+.+.+..| |+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~  404 (434)
T PRK11663        326 VGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTG  404 (434)
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHH
Confidence            1111111122333333444555543332233334567899999999999999999999999999999999999888 999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 016350          210 CFWVSIVPAAILCLAMV  226 (391)
Q Consensus       210 ~f~~~~~~~~~~~~~~~  226 (391)
                      .|++.++..++..+..+
T Consensus       405 ~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        405 FFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988777766655444

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=8.6e-12  Score=116.42  Aligned_cols=144  Identities=13%  Similarity=0.062  Sum_probs=112.1

Q ss_pred             HHHhhhhhhcccchHHHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh
Q 016350           60 SFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (391)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  138 (391)
                      .++............|.+.+ .+|.++.+.  ++....+.++..++.++.|++.||+|||+++..+..+.+++..+..+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  347 (471)
T PRK10504        270 SFAGRIGSGMLPFMTPVFLQIGLGFSPFHA--GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV  347 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence            33333333444456676665 467665555  788888888888888999999999999999999988888877766553


Q ss_pred             ---hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          139 ---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       139 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                         ++...+.+.-++.|++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+.+..+
T Consensus       348 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        348 ALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               3344455567888898888888888999999999999999999999999999999999887765544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.38  E-value=2e-12  Score=116.40  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=115.7

Q ss_pred             chHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhh-HHHHHHHHH
Q 016350           72 EPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN-LIGMLLGRF  149 (391)
Q Consensus        72 ~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-~~~l~~~r~  149 (391)
                      ...|.+.++ +|.+..+.  +++.+.+.++..++.++.+++.||+|||+.+..+..+.+++.....+.++ .+.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHY--GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence            456766665 78776666  89999999999999999999999999999999888888888888877774 888888999


Q ss_pred             HhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc
Q 016350          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (391)
Q Consensus       150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (391)
                      +.|++.+...+....++.|..|+++|+++.++.+....+|..+++.+++.+.+..
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999887643

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.37  E-value=6.5e-12  Score=115.99  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch--hhHHHHHhhHHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPM  128 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~  128 (391)
                      +.++...++..+......+....+|.+.++.+.+.++.  +.+.++..+...++.++.|+++|+..  ++.+..++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence            34566666677777777777778999999999988877  89999999999999999999999988  567777888899


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      +++.+.+.++++++.++...++.|++.|........++.|..+.++-..+.|+.....+++.++||++++.+.+..+.|.
T Consensus       376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            99999999999999999999999999999998888899999999999999999999999999999999999998888789


Q ss_pred             HHHHHHHHHHHHHHHHhhccc
Q 016350          209 ICFWVSIVPAAILCLAMVFCA  229 (391)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~~  229 (391)
                      ..|+..++..++..+.++..+
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999998888888777776665

>PRK15075 citrate-proton symporter; Provisional

Probab=99.36  E-value=1.8e-11  Score=112.84  Aligned_cols=138  Identities=18%  Similarity=0.088  Sum_probs=98.6

Q ss_pred             hhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHH-H---Hhhhh
Q 016350           66 HLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI-S---ATTRN  140 (391)
Q Consensus        66 ~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~-~---~~~~~  140 (391)
                      ....+....|.+.++ +|.+.++.  ++....+.++..++.+++|+++||+|||++++.+..+..+.... .   ...++
T Consensus       253 ~~~~~~~~~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PRK15075        253 SFYLITVYTPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS  330 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            333445567776655 78877665  78888888889999999999999999999988765544332211 1   12234


Q ss_pred             HHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHH-HHHHHHHHHHHhccccccccc
Q 016350          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       141 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      +..+.+..++.|++.+...+....++.|.+|+++|+++.++... +..++..++|.+.+.+.+..+
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            44444555666677777666677889999999999999998644 444556778988888888766

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.35  E-value=1.2e-10  Score=108.72  Aligned_cols=155  Identities=17%  Similarity=0.229  Sum_probs=119.1

Q ss_pred             HHHhHhhhccCcchhHHHHHHH-HHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH---Hhh-hhHHHHHHHH
Q 016350           74 LESISLDLGFNGNTLAEGLVVS-MCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGR  148 (391)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r  148 (391)
                      .|.+.+++|.+.++.  ++... ...++..++.+++|+++||+|+|+.+..+.++.+++.+..   +.. ++...+.+.-
T Consensus       246 ~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~  323 (491)
T PRK11010        246 TTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            344556788887776  78764 5567899999999999999999998877666555544332   232 3555555566


Q ss_pred             HHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhcc
Q 016350          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~  228 (391)
                      +++.++.|...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+..| |+..|.+.++.+++..+...++
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            676666666667778888999999999999999999999998888888999998888 9999998888888776666555


Q ss_pred             ccc
Q 016350          229 AES  231 (391)
Q Consensus       229 ~e~  231 (391)
                      +++
T Consensus       403 ~~~  405 (491)
T PRK11010        403 RQT  405 (491)
T ss_pred             Hhc
Confidence            443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.35  E-value=9.8e-12  Score=113.29  Aligned_cols=133  Identities=13%  Similarity=0.052  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcC
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  170 (391)
                      |.+.++..+...++.+..|++.||+|||+.+.++..+.+++..+.+.++|.+.+++.++++|++..........+..+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            78888888888899999999999999999999999988888888788889999999999999987777666777788888


Q ss_pred             CccccchHHHH-HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH
Q 016350          171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       171 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~  224 (391)
                      +++.++...+. .+....+|..+++.++|.+.+..| |+..|.+.++..++..+.
T Consensus       337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            88888887766 678899999999999999999888 899999877776665443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.34  E-value=3.1e-10  Score=100.06  Aligned_cols=294  Identities=12%  Similarity=0.071  Sum_probs=177.3

Q ss_pred             hHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 016350           73 PLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (391)
Q Consensus        73 ~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  151 (391)
                      ..|.+.+. .|++.++.. .-+.-...-.+....++...+.|..|.|++++.+.+...+...+.-+.++...+-+..++-
T Consensus        26 l~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~y  104 (412)
T PF01770_consen   26 LTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFY  104 (412)
T ss_pred             chHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence            44555554 788887764 3445555566778889999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHHHHHHHHHhhcccc
Q 016350          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAMVFCAE  230 (391)
Q Consensus       152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w~~~f~~~~~~~~~~~~~~~~~~e  230 (391)
                      |++.+. ..+.++++-...|+++-.++.+...++.-+|..++.++|-.+....+ ..+...++......+..+..+++|.
T Consensus       105 g~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  105 GLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            997766 45777888888899999999999999999999999998887776432 2566666665555555566677777


Q ss_pred             chhHHHHcCCHHHHHHHHH-HHhCCCCchhHHHHhhhcccCCC-C-------ccccchhcccccchhHHHHHHHHHHHHh
Q 016350          231 SPHWLYKKGRTAEAEAEFE-KLLGGSHVKSSLAELSKLDRGDD-G-------DIVKFEELLYGRHFRVVFIGSTLFALQQ  301 (391)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (391)
                      .++...-+++.++..+..+ +....++..+...+..+.+.... .       -..++++..++|......+-..+..   
T Consensus       184 ~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~at---  260 (412)
T PF01770_consen  184 PKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFAT---  260 (412)
T ss_pred             CCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---
Confidence            6543222222111110000 00000000000000000000000 0       0122344445555544333222222   


Q ss_pred             hhchhhHHHhHHHHHhhc------CCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHH--HHHHHHHHHHHHHHh
Q 016350          302 LSGINAIFYFSSSVFKSA------GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS--FFSMAVSMAIQVAAS  372 (391)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~--~~~~~~~~~~~~~~~  372 (391)
                       +++.....|.+...+.-      ..-.|..-....+.+.++.+..|++-.+..+..-+..+  .++.+..++++....
T Consensus       261 -cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~  338 (412)
T PF01770_consen  261 -CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG  338 (412)
T ss_pred             -hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             22333444555444433      11246677777888888899999986666654444333  333344444444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.34  E-value=4.1e-11  Score=110.41  Aligned_cols=136  Identities=14%  Similarity=0.050  Sum_probs=101.1

Q ss_pred             cchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh--hHHHHHHHH
Q 016350           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGR  148 (391)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r  148 (391)
                      ...+|.+.++.|.+.++.  +...+.+.++..++.++.|++.||+|||+.+..+.++..+..+.....+  +...+.+..
T Consensus       251 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        251 FGLLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            445677777778766655  7888888999999999999999999999999988877766655444332  222222222


Q ss_pred             HHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  209 (391)
                      +..+++.....+..+.++.|.+|+++|++++|+......+|..++|.+.+.+.+..+ +..
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~  388 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGA  388 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHH
Confidence            222233333344556788999999999999999999999999999999999988777 444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.33  E-value=1.6e-11  Score=113.96  Aligned_cols=153  Identities=19%  Similarity=0.179  Sum_probs=133.1

Q ss_pred             ccchHHHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q 016350           70 VNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (391)
Q Consensus        70 ~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (391)
                      +...+|.+.+ ++|.+....  |++.+.+.+|..+|.+..+++.+|+++++.+..+.++++++.+..+++++.+..++.-
T Consensus       237 ~~aLlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l  314 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL  314 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3445776664 577765555  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh
Q 016350          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                      ++.|++.....+...+.+.+..|++.||+.++++.+....+..+|..+.|.+.+..| -+..+.+.++..++..++.
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHH
Confidence            999999999888889999999999999999999999999999999999999999888 6788877666555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.32  E-value=4.6e-11  Score=110.48  Aligned_cols=115  Identities=19%  Similarity=0.146  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh-hhHHHHHHHHHHhhhccchhhHHHHHHHhhc
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  169 (391)
                      +++.++..++..++.+++++++||+|+|+++..+..+.+++.+...+. ++.+.+++..++.|++.+...+...++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            677788889999999999999999999999999998888887777665 4666777788899999999999999999988


Q ss_pred             CC-------ccccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          170 SP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       170 ~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      .+       ++.+|...++.+....+|..+++.+.+.+.+..|
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            65       4567999999999999999999999888766544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.32  E-value=2.1e-11  Score=110.88  Aligned_cols=148  Identities=15%  Similarity=0.015  Sum_probs=112.3

Q ss_pred             hHHHhHhhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh------hhhHHHHH
Q 016350           73 PLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT------TRNLIGML  145 (391)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~------~~~~~~l~  145 (391)
                      ..+.+.+|.|.+.++.  |++..... ....++.++.|++.||+|+|+++..+..+.++..+....      .++...+.
T Consensus       230 ~~~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             HhhHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            4566667789988777  88877765 466678899999999999999998877665443332221      12333445


Q ss_pred             HHHHHhhhccchhhHHHHHHHhhcCCc-cccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHH
Q 016350          146 LGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (391)
Q Consensus       146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~  223 (391)
                      ....+.+++.+...+.....+.+..++ +++++.+++.+....+|..++|.++|.+.+..| |+..|...++..++..+
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence            555666777788877777787777776 889999999999999999999999999998888 89999887766665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.32  E-value=3.6e-11  Score=110.80  Aligned_cols=156  Identities=12%  Similarity=0.070  Sum_probs=97.6

Q ss_pred             cchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHH--h--hhhHHHHH
Q 016350           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA--T--TRNLIGML  145 (391)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~--~~~~~~l~  145 (391)
                      ...+|.+. +++|.+.++.  ++..++..++..+++++.|+++||+|||+++..+..+.++......  .  .++....+
T Consensus       263 ~~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (432)
T PRK10406        263 TTYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF  340 (432)
T ss_pred             HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            44566654 5678876655  6777777778888999999999999999988776655433332111  1  12222222


Q ss_pred             HHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHH-HHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH
Q 016350          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~  224 (391)
                      ..-.+.+++.+...+....+++|++|++.|+++.|+.+....+ .....|.+.+.+.. .+.|...+++.++..++..+.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHH
Confidence            2222222333344445667889999999999999998765443 23346776665543 343666666665655555555


Q ss_pred             hhccc
Q 016350          225 MVFCA  229 (391)
Q Consensus       225 ~~~~~  229 (391)
                      .++++
T Consensus       420 ~~~l~  424 (432)
T PRK10406        420 SLMLH  424 (432)
T ss_pred             HHHhh
Confidence            44443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.29  E-value=9.4e-11  Score=102.83  Aligned_cols=159  Identities=20%  Similarity=0.173  Sum_probs=130.8

Q ss_pred             hhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh-hHH
Q 016350           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLI  142 (391)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~  142 (391)
                      .-....+..+-|.+.+..|.+.+..  +++.-.|.++..+|+...|++.|| +.|+.+.....+.++..+...+.. +.+
T Consensus       225 ~g~F~~ftYi~P~L~~v~g~s~~~v--s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~  301 (394)
T COG2814         225 TGHFALYTYIRPFLESVAGFSVSAV--SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPA  301 (394)
T ss_pred             cchhhhHHhHHHHHHHccCCCHhHH--HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3344445667788888889988777  899999999999999999999999 999999998888777777666554 555


Q ss_pred             HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH
Q 016350          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (391)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~  222 (391)
                      ..++.-++.|+..+.........+++ ..|+.+..+.++.....++|..+|..+|+.+.++.| +....++.++..++..
T Consensus       302 ~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~  379 (394)
T COG2814         302 LALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLAL  379 (394)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHH
Confidence            66666777888887777777777777 446789999999999999999999999999999988 8999999888888776


Q ss_pred             HHhhc
Q 016350          223 LAMVF  227 (391)
Q Consensus       223 ~~~~~  227 (391)
                      +..+.
T Consensus       380 ~~~~~  384 (394)
T COG2814         380 LLALL  384 (394)
T ss_pred             HHHHH
Confidence            66543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.28  E-value=1.9e-10  Score=95.45  Aligned_cols=161  Identities=16%  Similarity=0.109  Sum_probs=121.3

Q ss_pred             hhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh-------
Q 016350           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-------  138 (391)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-------  138 (391)
                      ....++..-|++++.+|++.++.  ..+.+.-.+|..+ .++.|.+.|++|+|.++.+|.+...+|..+...+       
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~   93 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS   93 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc
Confidence            44456677899999999988777  6888888899876 5889999999999999999999999998876553       


Q ss_pred             hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHH
Q 016350          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (391)
Q Consensus       139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~  218 (391)
                      .+++.+.+..++.|.+.+...........+.|| ++||++.|+.-...+++..+-..+...+.+... -+..+.....+.
T Consensus        94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~-~~fll~la~~~~  171 (250)
T PF06813_consen   94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP-SSFLLFLAVLPA  171 (250)
T ss_pred             cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Confidence            467888888888888877777777777778887 579999999999999986555544443333332 355555555555


Q ss_pred             HHHHHHhhccccc
Q 016350          219 AILCLAMVFCAES  231 (391)
Q Consensus       219 ~~~~~~~~~~~e~  231 (391)
                      ++.++..+++++.
T Consensus       172 ~v~l~~~~~vr~~  184 (250)
T PF06813_consen  172 VVCLVAMFFVRPV  184 (250)
T ss_pred             HHHHHHhhheecc
Confidence            5555555555444

>PRK10054 putative transporter; Provisional

Probab=99.28  E-value=3.9e-11  Score=109.11  Aligned_cols=129  Identities=12%  Similarity=0.042  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh-hhHHHHHHHHHHhhhccchhhHHHHHHHhhc
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  169 (391)
                      +++.+.+.+.....+++.|++.||+++|+.+..+..+..++.+...++ ++.+.+++..++.|+|.+...|....++.+.
T Consensus       247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~  326 (395)
T PRK10054        247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHI  326 (395)
T ss_pred             HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            677777777777778899999999999999999988888888777664 5777777889999999988888888999999


Q ss_pred             CCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHH
Q 016350          170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (391)
Q Consensus       170 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~  221 (391)
                      .|++.|+++.+..+ ...+|..+||.+++.+.++.+ .+..|++.+....+.
T Consensus       327 ~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~  376 (395)
T PRK10054        327 APPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAA  376 (395)
T ss_pred             CCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHH
Confidence            99999999988765 455899999999999999888 567777654444443

>TIGR00896 CynX cyanate transporter

Probab=99.27  E-value=5.8e-11  Score=106.59  Aligned_cols=136  Identities=18%  Similarity=0.076  Sum_probs=106.8

Q ss_pred             ccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q 016350           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (391)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (391)
                      ....+|.+.++.|.+.++.  +++.+.+.++..++.++.|++.||+ +||+.+..+..+.+++.+...+.++..... .-
T Consensus       216 ~~~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  292 (355)
T TIGR00896       216 LIGWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA  292 (355)
T ss_pred             HHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence            3446787778888876666  8999999999999999999999999 567777778888888777776665433222 45


Q ss_pred             HHhhhccchhhHHHHHHHhhcCC-ccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          149 FVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      ++.|++.+...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.++.+.|.
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            77899999998887777765554 5667889999888888899999999999988776443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.27  E-value=6e-11  Score=109.56  Aligned_cols=159  Identities=18%  Similarity=0.142  Sum_probs=103.5

Q ss_pred             ccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHH---HHHHHHHh--hhhHHH
Q 016350           70 VNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI---IGASISAT--TRNLIG  143 (391)
Q Consensus        70 ~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---i~~~~~~~--~~~~~~  143 (391)
                      .....|.+.++ .|.+..+.  ++....+.++..++.+.+|+++||+|+++....+.....   ++.+....  ..+.+.
T Consensus       270 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T TIGR00712       270 VLDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV  347 (438)
T ss_pred             HHHhHHHHHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            33456666654 67776665  788888999999999999999999975432222322221   11121112  123343


Q ss_pred             HHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHH-HHHHHHhccccccccchhHHHHHHHHHHHHHHH
Q 016350          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG-LMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (391)
Q Consensus       144 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~  222 (391)
                      ..+.-++.|++.............|.+|+++|+++.|+.+....+| ..++|.+.+.+.++.| |...|++.....++..
T Consensus       348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~  426 (438)
T TIGR00712       348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAV  426 (438)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence            3444455555433222222345789999999999999998877766 5789999999999888 8999887666555544


Q ss_pred             HH-hhccccc
Q 016350          223 LA-MVFCAES  231 (391)
Q Consensus       223 ~~-~~~~~e~  231 (391)
                      +. ..+.||+
T Consensus       427 ~~~~~~~~~~  436 (438)
T TIGR00712       427 ILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHhhc
Confidence            43 4556664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.27  E-value=1.4e-10  Score=101.50  Aligned_cols=158  Identities=13%  Similarity=0.126  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHHhHhh---hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  127 (391)
                      +.+.+..++.+.............+.+.++   +|.++++.  ++..+.+..+..++.+..+++.||+|+|+++..+..+
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l  217 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL  217 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            334444455555443444445555655543   57777766  8999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchh
Q 016350          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (391)
Q Consensus       128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (391)
                      ..++.++....++... ..+-++.|++.+..+|...+...+..|++ .+++.++. ....+|..+.|.+.|.+.+..+ .
T Consensus       218 ~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~  293 (310)
T TIGR01272       218 AVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-I  293 (310)
T ss_pred             HHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-c
Confidence            8877766655554332 33556889999999999999888888754 56666765 4566889999999999988777 6


Q ss_pred             HHHHHHH
Q 016350          208 RICFWVS  214 (391)
Q Consensus       208 ~~~f~~~  214 (391)
                      +..|++.
T Consensus       294 ~~a~~v~  300 (310)
T TIGR01272       294 QLAFALP  300 (310)
T ss_pred             hHHHHHH
Confidence            7777643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.26  E-value=7.5e-11  Score=109.84  Aligned_cols=152  Identities=12%  Similarity=-0.003  Sum_probs=105.2

Q ss_pred             hHHHh-HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-------HHHHHhhHHHHHHHHHHHhhhhHHHH
Q 016350           73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR-------RAFQLCALPMIIGASISATTRNLIGM  144 (391)
Q Consensus        73 ~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~i~~~~~~~~~~~~~l  144 (391)
                      .+|.+ .+++|.+..+.  +++.+++.++..++.+++|+++||+|||       .......++.++..++....++.+..
T Consensus       274 ~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~  351 (476)
T PLN00028        274 IIAEYFYDRFGLSLETA--GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAA  351 (476)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            34544 56678887766  8889999999999999999999999976       23333344444444455556666665


Q ss_pred             HHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH
Q 016350          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~  224 (391)
                      ++.-++.+++.+...+....++.+.. +++||.+.|+.+.+..+|..+++.+.+ .....+ |+..|++.+++.++..+.
T Consensus       352 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~-y~~~f~~~~~~~~i~~~~  428 (476)
T PLN00028        352 IVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYS-TETGISLMGVMIIACTLP  428 (476)
T ss_pred             HHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCcc-HhhHHHHHHHHHHHHHHH
Confidence            66666666666555555566666765 478999999998887788777776643 222334 899998888777776666


Q ss_pred             hhccc
Q 016350          225 MVFCA  229 (391)
Q Consensus       225 ~~~~~  229 (391)
                      .++.+
T Consensus       429 ~~~~~  433 (476)
T PLN00028        429 VAFIH  433 (476)
T ss_pred             HHhee
Confidence            65554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.25  E-value=1.2e-11  Score=111.93  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             HHHHHHHHhhhhhhcccchHHHh-HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHH-Hhh-HHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQ-LCA-LPMII  130 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~-~~~-~~~~i  130 (391)
                      .+.+..+.............|.+ .+++|.+..+.  ++..+.+.++..++.++.|++.||.+ ||+... ... ....+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~  297 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKA--SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV  297 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            33334444343333344455554 45678877666  88899999999999999999999864 333222 222 11222


Q ss_pred             HHHHHHh--hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 016350          131 GASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (391)
Q Consensus       131 ~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  208 (391)
                      +......  ..+....++..++.|+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~  376 (379)
T TIGR00881       298 SLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WA  376 (379)
T ss_pred             HHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-cc
Confidence            2222222  33555666677777876666666667788999999999999999999999999999999999999888 87


Q ss_pred             HHH
Q 016350          209 ICF  211 (391)
Q Consensus       209 ~~f  211 (391)
                      +.|
T Consensus       377 ~~f  379 (379)
T TIGR00881       377 GAF  379 (379)
T ss_pred             ccC
Confidence            654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.25  E-value=1.5e-10  Score=100.59  Aligned_cols=172  Identities=19%  Similarity=0.190  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHH-HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhhHHHHH-hhH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQL-CAL  126 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~-~~~  126 (391)
                      +.++.++++.++.+..+..+.--.| .+.|..|.+..+.  ++..+.|-++...|.+++|+++||+  |||....+ .++
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            5677888888888888888777777 4556678877777  7999999999999999999999994  67755444 444


Q ss_pred             HHHHHHHHHHhhh--hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHH-HHHHHHHhccccccc
Q 016350          127 PMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEI  203 (391)
Q Consensus       127 ~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~  203 (391)
                      ...++.+..-.++  |+....++-++.|+..-+..-.......|..|++--|++.|+.+.+..+ |...+....+.+.+.
T Consensus       330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~  409 (448)
T COG2271         330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT  409 (448)
T ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence            4444444444554  5577888889999887666666667789999999999999999988888 899999999999888


Q ss_pred             cchhHHHHHHHHHHHHHHHHHh
Q 016350          204 AGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                      .| |...|++..+.+++..++.
T Consensus       410 ~g-W~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         410 WG-WDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             CC-CcchHHHHHHHHHHHHHHH
Confidence            88 9999988766666655544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.25  E-value=1.2e-10  Score=106.52  Aligned_cols=162  Identities=17%  Similarity=0.097  Sum_probs=106.0

Q ss_pred             HHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH-HHHhhHHHHHHHHH
Q 016350           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA-FQLCALPMIIGASI  134 (391)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~i~~~~  134 (391)
                      ..+..+........+...+|.+.++++.+.+..+.++..+...++..++.++.|+++||++||+. ......+.+++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~  326 (412)
T TIGR02332       247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL  326 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH
Confidence            33333444444444566788888876432222333788899999999999999999999997774 34444444443332


Q ss_pred             HHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHH
Q 016350          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (391)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~  214 (391)
                      ....++....+++-.+.++|.....+.......|.+|+++|+++.|+.+....+|..++|.+.+.+.+..+.|++.|++.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~  406 (412)
T TIGR02332       327 ASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFV  406 (412)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHH
Confidence            22222222222222233333333333444555778999999999999999999999999999999998775589888776


Q ss_pred             HHH
Q 016350          215 IVP  217 (391)
Q Consensus       215 ~~~  217 (391)
                      ++.
T Consensus       407 ~~~  409 (412)
T TIGR02332       407 AAL  409 (412)
T ss_pred             HHH
Confidence            554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.24  E-value=3.6e-10  Score=102.79  Aligned_cols=145  Identities=14%  Similarity=0.020  Sum_probs=112.9

Q ss_pred             HHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 016350           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (391)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  153 (391)
                      .|.+.+++|.+.++.  +++...+.++..++.++.+++.||.+++..+...........++....++.+.+.+..++.|+
T Consensus       240 ~p~~~~~~g~s~~~~--g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~  317 (394)
T PRK10213        240 RPVYMNLAGFGVDGL--TLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            477778889887766  888999999999999999999999654443443333334434444556677778888999999


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~  222 (391)
                      +.+...+...+++.+..| +++++..+.......+|..+|+.++|.+.+..| ++..+...++..++..
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHH
Confidence            999999888888888887 557788888888889999999999999999888 7888887766554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.23  E-value=1e-10  Score=101.69  Aligned_cols=155  Identities=16%  Similarity=0.184  Sum_probs=133.9

Q ss_pred             HHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 016350           75 ESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (391)
Q Consensus        75 ~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  153 (391)
                      ..+.+ ++|++..+.  .++.....+..++|++++|++.||+|.|+++.+++++..+.++..-+...-..+.++-.+.|.
T Consensus       276 ~~fg~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~  353 (438)
T COG2270         276 GVFGAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGT  353 (438)
T ss_pred             HHHHHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            34444 899987777  677777788889999999999999999999999999999999988887777777888899999


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhccccc
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      ..|+.+....++.++..|+++-++.+|+++...-.+..+||.+-+.+.+..+.-|.-+....++.++.++..+++|++
T Consensus       354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            999999999999999999999999999999999999999999999888877666777777666666666666766654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.23  E-value=2.4e-10  Score=102.97  Aligned_cols=176  Identities=20%  Similarity=0.270  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhc-cCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (391)
                      +....+..++.+.....+....+.+.+|.| .+.+..  +.+.++..++-...-...+++..|+|.|+++.++.+..++=
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR  286 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVR  286 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            334444555666666666667777788887 554444  66667777788888899999999999999999999999998


Q ss_pred             HHHHHhh-hhHHHHHH----HHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHH-HHHHHHHHHHHhccccccccc
Q 016350          132 ASISATT-RNLIGMLL----GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       132 ~~~~~~~-~~~~~l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      ..+.+.. ++.+...+    ...++|+..+........++.+..|++.|+++.+++.. ..++|..+|..++|++.+..+
T Consensus       287 ~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  287 WLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            8888877 55444333    35679999999999999999999999999999999875 578999999999999998765


Q ss_pred             h-----hHHHHHHHHHHHHHHHHHh-hcccc
Q 016350          206 W-----WRICFWVSIVPAAILCLAM-VFCAE  230 (391)
Q Consensus       206 ~-----w~~~f~~~~~~~~~~~~~~-~~~~e  230 (391)
                      .     |...+.+.++..++..+++ .+++|
T Consensus       367 ~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  367 ARGMFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            2     4455556555555554444 33444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.22  E-value=4.9e-10  Score=102.52  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=110.0

Q ss_pred             HHHh-HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh-----hhHHHHHHH
Q 016350           74 LESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGMLLG  147 (391)
Q Consensus        74 ~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~  147 (391)
                      .|.+ .+++|.++.+.  ++......++..++.++.|+++||+|+|+.+..+..+..++.++..+.     +++..+++.
T Consensus       238 ~p~~~~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK15402        238 SPVILISGEQLSSYEY--GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG  315 (406)
T ss_pred             hHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            4544 56678876655  777777778889999999999999999999999888877777766553     356667788


Q ss_pred             HHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHH
Q 016350          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (391)
Q Consensus       148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~  221 (391)
                      -++.|++.+...+......... ++++||+..+..+....+|..+|+.+++.+.+..+ +....+..++..++.
T Consensus       316 ~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~  387 (406)
T PRK15402        316 LSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHH
Confidence            8999999888776665555443 45889999999999999999999999999988877 444444444333333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.21  E-value=3e-10  Score=103.52  Aligned_cols=151  Identities=11%  Similarity=-0.001  Sum_probs=114.7

Q ss_pred             chHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016350           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (391)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (391)
                      ..+|.+.++.+.++.+.  +++.+...++...+..+.+++.| |++.|+.+..+..+.+++.++.+++++++.+.+..++
T Consensus       229 ~~~p~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  306 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAV--KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL  306 (400)
T ss_pred             HhhhhhHHhhcCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            35677667655454444  78877777766656666666665 5777777788888888888888888888888888888


Q ss_pred             hhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc---hhHHHHHHHHHHHHHHHHH
Q 016350          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---WWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---~w~~~f~~~~~~~~~~~~~  224 (391)
                      .|++.+...+...+++.|..|+++||+++++.+....+|..+||.+++.+.+..+   .-...++..++..++..+.
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            9998888888888999999999999999999999999999999999999987642   1244555545544444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.21  E-value=2.6e-10  Score=103.44  Aligned_cols=148  Identities=13%  Similarity=0.066  Sum_probs=107.1

Q ss_pred             HHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh-hhhHHHHHHHHHHhh
Q 016350           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-TRNLIGMLLGRFVVG  152 (391)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-~~~~~~l~~~r~l~G  152 (391)
                      .|.+.+.+|.+.++.  ++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+
T Consensus       223 ~~~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK10091        223 KPYMMFISGFSETSM--TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            355656688877666  89999999999999999999999999999999988888887765543 455555666666667


Q ss_pred             hccchhhHHHH-HHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh
Q 016350          153 TGMGLGPTVAA-LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       153 ~~~g~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                      ++.....+... ....+..+++.++.+  ..+....+|..+||.+++.+.+..++|++.+.+.++..++.+...
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            66554444333 334444444555544  346678899999999999998864338999988776666654443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.20  E-value=6.6e-10  Score=103.58  Aligned_cols=175  Identities=12%  Similarity=0.063  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH--------HH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA--------FQ  122 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~--------l~  122 (391)
                      .+....+..+............+|.+. +++|.+..+.  ++..++..++..++.++.|+++||+++|+.        +.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKEN--GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            344445555555555555555677665 5578877666  899999999999999999999999876532        11


Q ss_pred             HhhHHH--HHHHHHHHh-hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccc
Q 016350          123 LCALPM--IIGASISAT-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (391)
Q Consensus       123 ~~~~~~--~i~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  199 (391)
                      .+....  ++..+.... ..+....+++-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~  418 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGN  418 (465)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            111111  111111122 2334444444455555555555554455567665 589999999999999999999999998


Q ss_pred             ccccc--chhHHHHHHHHHHHHHHHHHhhccc
Q 016350          200 VKEIA--GWWRICFWVSIVPAAILCLAMVFCA  229 (391)
Q Consensus       200 l~~~~--~~w~~~f~~~~~~~~~~~~~~~~~~  229 (391)
                      +.+..  +.|+..|.+.++..++..+...+.+
T Consensus       419 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       419 ILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             eeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            87653  3388899888877777666554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.17  E-value=1.4e-13  Score=127.61  Aligned_cols=165  Identities=19%  Similarity=0.108  Sum_probs=107.3

Q ss_pred             hcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHH--h--hhhH--
Q 016350           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA--T--TRNL--  141 (391)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~--~~~~--  141 (391)
                      .......+.+.++.+.+.. .   +......+...++.+....+.||+|||++++.+..+.+++.+..+  .  .++.  
T Consensus       270 ~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  345 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSS  345 (451)
T ss_pred             ccccccccccccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444556778888887765 2   222233344456777777999999999999999998888877764  1  1111  


Q ss_pred             ---HHHHHHHHHhhhccc-hhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHH-H
Q 016350          142 ---IGMLLGRFVVGTGMG-LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI-V  216 (391)
Q Consensus       142 ---~~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~-~  216 (391)
                         ...++.-.+...+.+ ...+....+..|.+|.+.|+++.++......++..+++.+...+.+..+. ...|.+.+ +
T Consensus       346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~i~~~~  424 (451)
T PF00083_consen  346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG-WGVFLIFAGV  424 (451)
T ss_pred             ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccchhhHHH
Confidence               111122122212222 23355567889999999999999999998888988888888877766542 33444434 4


Q ss_pred             HHHHHHHHhhccccchhHHHHcCCHHH
Q 016350          217 PAAILCLAMVFCAESPHWLYKKGRTAE  243 (391)
Q Consensus       217 ~~~~~~~~~~~~~e~~~~~~~~~~~~~  243 (391)
                      ..+..++..+++||+      ++++.+
T Consensus       425 ~~i~~i~~~~~lpET------~g~~l~  445 (451)
T PF00083_consen  425 CLIAIIFVYFFLPET------KGKTLE  445 (451)
T ss_pred             HHHHHhheeEEEeeC------CCCCHH
Confidence            444445556889998      555544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.16  E-value=6.2e-10  Score=115.38  Aligned_cols=143  Identities=17%  Similarity=0.125  Sum_probs=118.9

Q ss_pred             hHH-HhHhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016350           73 PLE-SISLDLGFNGN-TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (391)
Q Consensus        73 ~~~-~i~~~~~~~~~-~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (391)
                      .+| .+.+++|.+.. ..  +++.+.+.++..++.++.|+++||+++|+++.++.++.+++.++..+..+.+.++++.++
T Consensus       254 ~~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (1146)
T PRK08633        254 NFPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL  331 (1146)
T ss_pred             hhHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            344 44566888766 55  899999999999999999999999999999999988888888888888898888899999


Q ss_pred             hhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc-cchhHHHHHHHHHHH
Q 016350          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPA  218 (391)
Q Consensus       151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~w~~~f~~~~~~~  218 (391)
                      .|++.+...+...+++.+..|++.||+++++.+....+|.++++.+++.+... .+ +...|++.+.+.
T Consensus       332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~  399 (1146)
T PRK08633        332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLS-PAGLFYLIALVT  399 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence            99999999888899999999999999999999999999988888887766442 23 555565544443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.14  E-value=7.3e-10  Score=99.50  Aligned_cols=121  Identities=18%  Similarity=0.204  Sum_probs=96.4

Q ss_pred             hhhhcccchHHHhHhhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh-----
Q 016350           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----  138 (391)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----  138 (391)
                      ..........|.+.+++|.+.++.  +.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.     
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  300 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEI--ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGH  300 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            333334456677767788877666  77776655 5678999999999999999999998888887776655443     


Q ss_pred             ------hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHH
Q 016350          139 ------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC  187 (391)
Q Consensus       139 ------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  187 (391)
                            ++.+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       301 HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                  3456777789999999999999999999999999999999999877653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.14  E-value=8.7e-10  Score=100.10  Aligned_cols=135  Identities=18%  Similarity=0.268  Sum_probs=100.8

Q ss_pred             HHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh-----hhHHHHHHH
Q 016350           74 LES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGMLLG  147 (391)
Q Consensus        74 ~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~  147 (391)
                      .|. +.+++|.++++.  +++.+...++..++.++.|++.||+|+|+.+..+..+..++.++....     ++...+++.
T Consensus       229 ~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (385)
T TIGR00710       229 APFVYIDIMGVSPSVF--GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGP  306 (385)
T ss_pred             ChHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            343 445788877666  888889999999999999999999999999988888877777666543     234455566


Q ss_pred             HHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHH-HHHHHHHHhccccccccchhHHHHHH
Q 016350          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC-LGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                      .++.|++.+...+.......|..| ++|+++.++.+.... .|.+.++.++ .+.+..+ |...+..
T Consensus       307 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~-~~~~~~~  370 (385)
T TIGR00710       307 MMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTA-WPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccCh-HHHHHHH
Confidence            788899999988888888888876 679999999876654 4677777665 4444333 5444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.13  E-value=1.7e-09  Score=98.99  Aligned_cols=156  Identities=19%  Similarity=0.176  Sum_probs=118.6

Q ss_pred             cchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch-----hhHHHHHhhHHHHHHHHHHHhh----hhH
Q 016350           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCALPMIIGASISATT----RNL  141 (391)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~i~~~~~~~~----~~~  141 (391)
                      .+..|.+.+++|+++++.  ....+...+... .-++.|.++|.+-     ||+.++++.++.+++.+..+..    .+.
T Consensus        10 ~~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQL--QRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            346788999999998877  466666666664 4788999999863     6666666777776666655543    346


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHHHhhcCC--ccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016350          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSP--PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (391)
Q Consensus       142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~  219 (391)
                      ....+.-++..+|........-+++.|...  ++.||...+.......+|.+++..++|.+.+..+ +|..|.+.+....
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~  165 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPL  165 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHH
Confidence            666677788889999999999999999884  3447888888889999999999999999998888 7899988776666


Q ss_pred             HHHHHhhcccc
Q 016350          220 ILCLAMVFCAE  230 (391)
Q Consensus       220 ~~~~~~~~~~e  230 (391)
                      +..+..+++.|
T Consensus       166 l~~~~~~~~~~  176 (433)
T PF03092_consen  166 LMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHhhh
Confidence            66555444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.13  E-value=3.2e-10  Score=100.61  Aligned_cols=141  Identities=15%  Similarity=0.068  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhh
Q 016350           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (391)
Q Consensus        89 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (391)
                      ..|.+.+...+.-++.-.+..++.+|+|.|+.++++.++.++=.+++++++|.+.+.+.+.+.|+-.+........|+++
T Consensus       260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~  339 (412)
T PF01306_consen  260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITA  339 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccchHHHHH-HHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh-hcccc
Q 016350          169 VSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAE  230 (391)
Q Consensus       169 ~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~e  230 (391)
                      .+|+|..++...+. +.+..+|..+.+.++|.+.+..| .+..|++.+.+.+...+.. +.+++
T Consensus       340 ~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  340 HFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             hCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecC
Confidence            99999888887774 68889999999999999999998 7989988777766665554 44443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.13  E-value=6.1e-10  Score=104.48  Aligned_cols=131  Identities=16%  Similarity=0.134  Sum_probs=109.6

Q ss_pred             cchHHHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh----hhhHHHHH
Q 016350           71 NEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT----TRNLIGML  145 (391)
Q Consensus        71 ~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~l~  145 (391)
                      ...+|.+.+ .+|.+..+.  ++......++..++.++.|++.||+|||+++..+..+.+++..+..+    ..+++.+.
T Consensus       275 ~~~~p~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  352 (485)
T TIGR00711       275 FYLLPLYLQQVLGYTALQA--GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIA  352 (485)
T ss_pred             HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence            345665554 478877666  88888899999999999999999999999999999888888887663    23566677


Q ss_pred             HHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccc
Q 016350          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (391)
                      ...++.|++.+...+.......+..|+++|+++.++.+....+|..+|+.+.+.+.++
T Consensus       353 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       353 LPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999988877777788889999999999999999999999999998877654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.12  E-value=1.9e-09  Score=98.44  Aligned_cols=146  Identities=16%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             HHhHhhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH---Hhh-hhHHHHHHHH-
Q 016350           75 ESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGR-  148 (391)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r-  148 (391)
                      +.+.+++|.+.++.  +++.+... .+..++.+++|++.||+|+|+.+..+..+..+..+..   ++. ++.+.+++.- 
T Consensus       234 ~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  311 (402)
T PRK11902        234 TFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG  311 (402)
T ss_pred             HHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            45667788887666  78776544 4678999999999999999998887777666554433   343 3555555544 


Q ss_pred             ---HHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh
Q 016350          149 ---FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       149 ---~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                         +..|++.+...+....++.+.+|.+++    +..+...++|...++.++|.+.+..| |+..|.+.++.+++..+..
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence               345565666677777777777775544    55555566777666678999999998 9999999888777765555


Q ss_pred             hc
Q 016350          226 VF  227 (391)
Q Consensus       226 ~~  227 (391)
                      +.
T Consensus       387 ~~  388 (402)
T PRK11902        387 WL  388 (402)
T ss_pred             HH
Confidence            43

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.11  E-value=3.2e-09  Score=95.31  Aligned_cols=167  Identities=14%  Similarity=0.024  Sum_probs=108.2

Q ss_pred             HHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh---hHHHHH-hhHHHHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR---RRAFQL-CALPMII  130 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr---r~~l~~-~~~~~~i  130 (391)
                      .+.+..+........+...+|.+.++.|.+.+ .  +...++..+...++   .++++||..|   |+.... ...+.++
T Consensus       196 ~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~--~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~  269 (368)
T TIGR00903       196 IIGAILGFGVALFDNLAIWLEAALRPAGLEDI-A--GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAA  269 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-H--HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence            33333444444444445578888888777643 2  55555555544444   4677777654   443332 3444444


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHH
Q 016350          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (391)
Q Consensus       131 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  210 (391)
                      .....+++.+....++.-.+.|++....++...++.+|.+|++.|+++.|+.+....+|...+|.+.+.+..  + -+..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~  346 (368)
T TIGR00903       270 FFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAY  346 (368)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHH
Confidence            444445555544455556677777777878888999999999999999999999999999888888876663  4 5667


Q ss_pred             HHHHHHHHHHHHHHhhcccc
Q 016350          211 FWVSIVPAAILCLAMVFCAE  230 (391)
Q Consensus       211 f~~~~~~~~~~~~~~~~~~e  230 (391)
                      |.+.+++.++..+.....++
T Consensus       347 f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       347 FTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            77766666665555444344

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.11  E-value=8.3e-10  Score=114.16  Aligned_cols=144  Identities=16%  Similarity=0.054  Sum_probs=114.5

Q ss_pred             chHHHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh------------
Q 016350           72 EPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT------------  138 (391)
Q Consensus        72 ~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------------  138 (391)
                      ..+|.+.+ .+|.+....  |++.+.+.++..++.++.|+++|+.++++.+..+.++.+++.+..++.            
T Consensus       246 ~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        246 SQLPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             HHhHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            35565554 478776666  899999999999999999999998888777666666666655544443            


Q ss_pred             --------hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHH
Q 016350          139 --------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (391)
Q Consensus       139 --------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  210 (391)
                              ++.+.++++.++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++++.+.....+....
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~  403 (1140)
T PRK06814        324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI  403 (1140)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                    677778888999999999999999999999999999999999999999999999999988876433225666


Q ss_pred             HHHHHHH
Q 016350          211 FWVSIVP  217 (391)
Q Consensus       211 f~~~~~~  217 (391)
                      |++.++.
T Consensus       404 ~~~~~~~  410 (1140)
T PRK06814        404 ILFIALA  410 (1140)
T ss_pred             HHHHHHH
Confidence            6554443

>PRK09848 glucuronide transporter; Provisional

Probab=99.11  E-value=2e-09  Score=99.76  Aligned_cols=129  Identities=16%  Similarity=0.041  Sum_probs=97.6

Q ss_pred             chHHHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh--hHHHHHHHH
Q 016350           72 EPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGR  148 (391)
Q Consensus        72 ~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r  148 (391)
                      ...|.+.+ .+|.+....  ++......++..++.++++++.||+|+|+++..+.++..++.+...+.+  +++.+++..
T Consensus       249 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  326 (448)
T PRK09848        249 ASSLFYVRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL  326 (448)
T ss_pred             hhheeeEeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence            34443433 355433222  3434444567788999999999999999999999998888887776643  567777778


Q ss_pred             HHhhhccchhhHHHHHHHhhcCCcc-------ccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350          149 FVVGTGMGLGPTVAALYVTEVSPPF-------VRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      ++.|+|.+...+...++.+|..|.+       ++|...+..+....+|..+++.+.+.+.+
T Consensus       327 ~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        327 AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999988754       35888999999999999998888776543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.11  E-value=4.5e-10  Score=100.60  Aligned_cols=126  Identities=26%  Similarity=0.332  Sum_probs=106.0

Q ss_pred             hhcccchHHHh-HhhhccC-cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh---hH
Q 016350           67 LGVVNEPLESI-SLDLGFN-GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NL  141 (391)
Q Consensus        67 ~~~~~~~~~~i-~~~~~~~-~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~  141 (391)
                      ........|.+ .+++|.+ ..+.  ++..+...++..++.++.|++.||+|+|+..........++.+...+..   +.
T Consensus       222 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (352)
T PF07690_consen  222 FSGFSFFLPLYLQEVLGFSGPSQA--GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSP  299 (352)
T ss_dssp             HHHHHHHHHHHCCHHHHCCTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHH
T ss_pred             HHHhhcccchhhhhccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            33355667775 8889988 4444  7889999999999999999999999998888888777777777665543   45


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHH
Q 016350          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (391)
Q Consensus       142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  194 (391)
                      ...++.-++.|++.+...+....++.|.+|+++||++.++.+....+|..++|
T Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            77777889999999999999999999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.6e-09  Score=88.90  Aligned_cols=169  Identities=17%  Similarity=0.109  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHH-H
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII-G  131 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i-~  131 (391)
                      +..++..+....+....+++  ..+.+.+|+|+.+.  +.+.+....-.++.+++.|.++|++|++...+.+..+..+ +
T Consensus       269 ~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~  344 (459)
T KOG4686|consen  269 LVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG  344 (459)
T ss_pred             HHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence            33444444444443333333  24788899998776  5666666666678899999999999999887776554443 3


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch--hHH
Q 016350          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--WRI  209 (391)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--w~~  209 (391)
                      -....++  ++.-.++-.+.|+............++...|+++-|++.|..+...++|..+.|++++.+.+..|+  |--
T Consensus       345 H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le  422 (459)
T KOG4686|consen  345 HSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLE  422 (459)
T ss_pred             hhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHH
Confidence            3333332  333345567788888777777788889999999999999999999999999999999999987763  333


Q ss_pred             HHHH-HHHHHHHHHHHhhc
Q 016350          210 CFWV-SIVPAAILCLAMVF  227 (391)
Q Consensus       210 ~f~~-~~~~~~~~~~~~~~  227 (391)
                      .|++ .+..++....+.+.
T Consensus       423 ~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  423 AFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4444 33444443333333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.08  E-value=2.6e-10  Score=96.98  Aligned_cols=125  Identities=21%  Similarity=0.217  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHH----HHHHHHHHhhhccchhhHHHHHHHhhcCCcccc
Q 016350          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI----GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR  175 (391)
Q Consensus       100 ~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r  175 (391)
                      .-.-|.++.+++.||+|||+.+..+++++++..+....+.+-.    .++.+|++.-    +.+...+.|..|.+|.+.|
T Consensus       393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chheEEEEecCcccchhhh
Confidence            3346889999999999999999999999999999887765433    3344566554    3444556789999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhccccc
Q 016350          176 GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      +.+.|.-....-+|.++.|+++-. .+..-  ..+..+.+...++..+...++|-+
T Consensus       469 atgvGtcSsmaRIggI~~p~iA~~-~e~s~--sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIAMR-AELST--SLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHHHH-hccce--eehHHHHHHHHHHHHHHheeeeec
Confidence            999999999999999999999832 22221  233334444455555555555543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.07  E-value=1.3e-08  Score=95.75  Aligned_cols=185  Identities=20%  Similarity=0.136  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i  130 (391)
                      +.+..+.+..+.............+.+.+..|.+.+..   +...+..+...++..+...+.||+|||+.++.+...+.+
T Consensus       295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~---~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~  371 (513)
T KOG0254|consen  295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTF---LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI  371 (513)
T ss_pred             HHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence            34444555555555566667778888999888875532   445555566667788889999999999999999999999


Q ss_pred             HHHHHHhhhhH--------------HHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHh
Q 016350          131 GASISATTRNL--------------IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (391)
Q Consensus       131 ~~~~~~~~~~~--------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  196 (391)
                      +.++.+.....              .....+-++..+..+ ..+....+.+|.+|.+.|+++.++......+...+-...
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g-~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~  450 (513)
T KOG0254|consen  372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG-WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF  450 (513)
T ss_pred             HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc-cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence            99988755222              111222233333333 334555788999999999999999887777665544444


Q ss_pred             ccccccccchhHHHHHHHHHHH-HHHH-HHhhccccchhHHHHcCCHHHHHH
Q 016350          197 GIPVKEIAGWWRICFWVSIVPA-AILC-LAMVFCAESPHWLYKKGRTAEAEA  246 (391)
Q Consensus       197 ~~~l~~~~~~w~~~f~~~~~~~-~~~~-~~~~~~~e~~~~~~~~~~~~~~~~  246 (391)
                      ...+....+ +...|...+..+ +... ...+++||+      +++..|..+
T Consensus       451 ~~~~~~~~~-~~~~f~~f~~~~~~~~~~fv~~~~pET------kg~sleei~  495 (513)
T KOG0254|consen  451 FPFITEALG-IGGTFGYFGGICLLSLIIFVFFFVPET------KGLTLEEIN  495 (513)
T ss_pred             HHHHHHhcc-ccchHHHHHHHHHHHHHHHheEEcccC------CCCcHHHHH
Confidence            333333322 234444433333 3334 456779998      666555433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.07  E-value=4.2e-09  Score=92.34  Aligned_cols=158  Identities=28%  Similarity=0.406  Sum_probs=125.5

Q ss_pred             HHHhhhhhhcccchHHHhHhhhccCcc--hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh
Q 016350           60 SFLFGYHLGVVNEPLESISLDLGFNGN--TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (391)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~  137 (391)
                      .+....+.....+..+.+..+++.+..  ..  ++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~   88 (338)
T COG0477          11 ALLLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL   88 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence            333345666666778888888776542  33  79999999999999999999999999999888888776666777777


Q ss_pred             hhh--HHHHHHHHHHhhhccchhhHHHHHHHhhcCCc-cccchHHHHHHH-HHHHHHHHHHHhccccccc--cchhHHHH
Q 016350          138 TRN--LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEI--AGWWRICF  211 (391)
Q Consensus       138 ~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~--~~~w~~~f  211 (391)
                      ..+  .+.+++.|+++|++.+...+....++.|++|+ ++|+...+.... ...+|..+++.+++.+...  .+ ||..|
T Consensus        89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  167 (338)
T COG0477          89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAF  167 (338)
T ss_pred             CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHH
Confidence            776  89999999999999999999999999999987 678998888888 5778888888777766544  34 89876


Q ss_pred             HHHHHHHHH
Q 016350          212 WVSIVPAAI  220 (391)
Q Consensus       212 ~~~~~~~~~  220 (391)
                      .........
T Consensus       168 ~~~~~~~~~  176 (338)
T COG0477         168 LLAALLGLL  176 (338)
T ss_pred             HHHHHHHHH
Confidence            665554433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.06  E-value=5.7e-09  Score=94.52  Aligned_cols=121  Identities=11%  Similarity=0.099  Sum_probs=85.9

Q ss_pred             HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHH---h-hhhHHHHHHHHHHh
Q 016350           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---T-TRNLIGMLLGRFVV  151 (391)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~-~~~~~~l~~~r~l~  151 (391)
                      .+.+++|.++++.  ++..+...++..++.++.|++.||+|||+.+..+..+..+..+...   . ..+++...++-.+.
T Consensus       220 ~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (377)
T PRK11102        220 VYIELNGVSPQNF--GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAF  297 (377)
T ss_pred             HHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3456678877666  8999999999999999999999999999999888776544433322   2 22444444455455


Q ss_pred             hhccchhhHHHHHHHhhcCCccccchHHHHHHHH-HHHHHHHHHHhccc
Q 016350          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIP  199 (391)
Q Consensus       152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~  199 (391)
                      +.+.+........++.|..| ++++++.++.+.. ..+|..+++++++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        298 VGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55555555566667778766 7899999987643 56778888877654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.06  E-value=1.8e-09  Score=101.20  Aligned_cols=129  Identities=12%  Similarity=0.014  Sum_probs=108.1

Q ss_pred             chHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh---hhHHHHHHH
Q 016350           72 EPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---RNLIGMLLG  147 (391)
Q Consensus        72 ~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~  147 (391)
                      ...|. +++.+|.++.+.  |+....+.++..++.++.|++.||+|+|+++..+.++.+++.++....   ++.+...+.
T Consensus       280 ~~~~~~lq~v~g~s~~~a--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  357 (495)
T PRK14995        280 LLMAQELQFVHGLSPLEA--GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGL  357 (495)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            34554 445578877766  898999999999999999999999999999998988888777655432   455666778


Q ss_pred             HHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      .++.|+|.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       358 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        358 MALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999988888888999999999999999999999999999999887654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.05  E-value=2.8e-09  Score=98.16  Aligned_cols=148  Identities=15%  Similarity=0.088  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +..+....++............+.+.++.--+++..  +.+..+..++..++.+++++++||+|+|+++..+..+.+++.
T Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~  304 (428)
T PF13347_consen  227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF  304 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence            334444555555666666666666666532222333  788888999999999999999999999999999999999999


Q ss_pred             HHHHhhh--hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc-------cccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350          133 SISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       133 ~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      ++..+.+  |.+.+++.-++.|++.+...+...++++|..+.       ++.|...+..+...-+|..+++.+.+.+.+
T Consensus       305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            9988886  999999999999999999999999999998873       335778888888888888888877766544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.05  E-value=6.8e-09  Score=94.41  Aligned_cols=133  Identities=13%  Similarity=0.028  Sum_probs=104.8

Q ss_pred             HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 016350           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGM  155 (391)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~  155 (391)
                      .+.+.+|.++.+.  |++.+.+.++..++++..+++.||.++|+++..+. +.++...+.++.++++..++.-++.|++.
T Consensus       231 ~~~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence            3455678877766  99999999999999999999999999998888775 44455555566777777778888999999


Q ss_pred             chhhHHHHHHHhhcCCccc-cchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350          156 GLGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       156 g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                      +...+...+.+.|..|++. +|++.++.+....+|..++..+.+.+. ..+ =+..+.+
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~  364 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV-KLG-VPVVAVI  364 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH-HcC-CCHHHHH
Confidence            9888878888888766654 799999999999999999998888654 333 3444444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.04  E-value=2.1e-09  Score=97.93  Aligned_cols=132  Identities=12%  Similarity=0.123  Sum_probs=87.1

Q ss_pred             hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccc
Q 016350           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (391)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g  156 (391)
                      +.+++|.+.++.  +.+.+...++..++.++.+++.||+|||+++..+..+..++.+...+.++....+..-.+.+.|.+
T Consensus       230 ~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEY--AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446778876665  788888899999999999999999999999999999888888888777665544444445444444


Q ss_pred             hhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHH
Q 016350          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (391)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~  216 (391)
                      ...+..  ...+..|.++|+   +.......++..+++.+++.+.+..+ +.....+.+.
T Consensus       308 ~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~~  361 (392)
T PRK10473        308 VGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIGI  361 (392)
T ss_pred             HHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Confidence            443332  334445544443   33334445566666666666665555 4443433333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.03  E-value=9.7e-08  Score=91.07  Aligned_cols=151  Identities=15%  Similarity=0.169  Sum_probs=116.9

Q ss_pred             hHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhHHHHHHHHHHHhhhh--------HHH
Q 016350           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRN--------LIG  143 (391)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~  143 (391)
                      +...+.+.+|.+.+..  ..+...+....-+.++++|+++|+ +||++.++++.++..+|.++.+++..        ...
T Consensus        10 LvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926        10 LVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            3445566678876665  566777776777889999999996 99999999999999999888876421        233


Q ss_pred             HHHHHHHhhhccchhhHHHHHHHhhcCCccc---cchHHHHHHHHHHHHHHHHHHhccccccc-------cchhHHHHHH
Q 016350          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEI-------AGWWRICFWV  213 (391)
Q Consensus       144 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~~~w~~~f~~  213 (391)
                      .+++-.+..+|.|+.-+...+...|.+++++   |-....++..+.++|+++++.+.+++.+.       .+ |...|.+
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i  166 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGV  166 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHH
Confidence            5677788889999999999999999997643   56678888899999999999888877633       24 8889988


Q ss_pred             HHHHHHHHHHHhh
Q 016350          214 SIVPAAILCLAMV  226 (391)
Q Consensus       214 ~~~~~~~~~~~~~  226 (391)
                      .++..++.++...
T Consensus       167 ~~i~m~ia~lvf~  179 (654)
T TIGR00926       167 PAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776655543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.03  E-value=7.5e-09  Score=96.49  Aligned_cols=136  Identities=8%  Similarity=-0.025  Sum_probs=97.0

Q ss_pred             hhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh-----hh
Q 016350           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TR  139 (391)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~  139 (391)
                      ..........+.+.+...-+.+.  .+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+     .+
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~~~~--~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGDADL--FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPH  322 (473)
T ss_pred             HHHHHHhhheeeEEEEECCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence            33333333444444443222222  266777777888899999999999999999999888877766655432     34


Q ss_pred             hHHHHHHHHHHhhhccchhhHHHHHHHhhcCC-------ccccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      +.+.+++.-++.|++.+...+...++++|..+       .+..|...+......-+|..+++.+.+.+.+
T Consensus       323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777888999999999999999999865       2334557888888888888888877776654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.01  E-value=1.3e-09  Score=94.84  Aligned_cols=150  Identities=17%  Similarity=0.151  Sum_probs=117.8

Q ss_pred             ccchHH-HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh-------hH
Q 016350           70 VNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-------NL  141 (391)
Q Consensus        70 ~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-------~~  141 (391)
                      ++..+| .+.++|+.+..+.  |.....+.+...+..+.+|+++||+|.+|++......++++..+.++.+       +.
T Consensus       237 fs~~l~~~~~~~fg~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~  314 (417)
T COG2223         237 FSAYLPMYLVTQFGLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF  314 (417)
T ss_pred             HHHHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence            344555 4666789887776  7889999999999999999999999999999999999999988877663       23


Q ss_pred             ----HHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHH
Q 016350          142 ----IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (391)
Q Consensus       142 ----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~  217 (391)
                          ..++...+..|+|.|..+    .++..++| ++-|.+.|+.+...++|...-|..-+...+..|.+...|++....
T Consensus       315 ~~~~~~~l~l~~~~G~GnGsvf----k~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~  389 (417)
T COG2223         315 VVFVAVFLALFVFAGLGNGSVF----KMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAF  389 (417)
T ss_pred             HHHHHHHHHHHHHhccCcchhe----eechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHH
Confidence                334556677777777665    56666665 468999999999999998888888777777766689999887777


Q ss_pred             HHHHHHHhh
Q 016350          218 AAILCLAMV  226 (391)
Q Consensus       218 ~~~~~~~~~  226 (391)
                      .+++.+..+
T Consensus       390 ~~~a~v~~~  398 (417)
T COG2223         390 YLVALVLTW  398 (417)
T ss_pred             HHHHHHHHH
Confidence            777666543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.00  E-value=3.7e-07  Score=83.32  Aligned_cols=286  Identities=8%  Similarity=-0.015  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcc---hhHHHHHHHHHHHHHHHH-HHHHHHhhhcchhhHHHHHhhH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGN---TLAEGLVVSMCLGGAFIG-STLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +.++...+..|+..++.+    .+-++.+++.++..   .-.+.++-+...+..++. .++.+++++|++|++++-....
T Consensus         7 ~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            344444444444444443    44556677666321   112378888777776666 8999999999999999888777


Q ss_pred             HHHHHHHHHHhh----h---------------------------hHHHHHHHHHHhhhccchhhH-HHHHHHhhcCCccc
Q 016350          127 PMIIGASISATT----R---------------------------NLIGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFV  174 (391)
Q Consensus       127 ~~~i~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~  174 (391)
                      .+.....+.++.    +                           +.|...+.-+...+-...... ....+.+|.++.++
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            776666665544    1                           122233333444444444444 67889999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccc-------ccchhH----HHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHH
Q 016350          175 RGTYGAFIQIATCLGLMGSLLIGIPVKE-------IAGWWR----ICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAE  243 (391)
Q Consensus       175 r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~w~----~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  243 (391)
                      -.|..++.+.+.++|.++++.+..++.+       ..+.|.    ..+.+.++.+++...+..++.+..   ..+++..+
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~~  239 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSYN  239 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccccc
Confidence            9999999999999999999988777652       122242    233333333333333333321110   00000000


Q ss_pred             HHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCC-
Q 016350          244 AEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-  322 (391)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (391)
                      .+                 +..+.++.+.....+.+.++++|....+.+...++..........   +-.......+.. 
T Consensus       240 ~~-----------------~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~---~k~~v~~~~p~~~  299 (472)
T TIGR00769       240 PA-----------------LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVT---WKSKLKAQYPSPN  299 (472)
T ss_pred             hh-----------------hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHH
Confidence            00                 000111122223456677788887776655555544332222211   112222222211 


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 016350          323 -----SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (391)
Q Consensus       323 -----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (391)
                           .|......++..++..++.+++.+|+|-+....+.-+++.+
T Consensus       300 ~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       300 EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                 22345555666666777779999999988766654444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10133 L-fucose transporter; Provisional

Probab=98.99  E-value=7.6e-09  Score=95.30  Aligned_cols=135  Identities=14%  Similarity=0.019  Sum_probs=104.4

Q ss_pred             HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccch
Q 016350           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL  157 (391)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~  157 (391)
                      ++.+|.++.+.  ++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.. .+..-++.|++.+.
T Consensus       287 ~~~~g~s~~~a--g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHH
Confidence            35678887776  8999999999999999999999999999999998888777766666655542 34566789999999


Q ss_pred             hhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHH
Q 016350          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (391)
Q Consensus       158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~  217 (391)
                      .+|...+...|..++ +.+.+.++... ..+|..++|.+.+.+.+..|.-|..|++..+.
T Consensus       364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~  421 (438)
T PRK10133        364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_pred             HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            999999999998765 46777777764 44677777777778777654236676654443

>PRK09669 putative symporter YagG; Provisional

Probab=98.99  E-value=1.3e-08  Score=94.15  Aligned_cols=114  Identities=15%  Similarity=0.054  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh--hhhHHHHHHHHHHhhhccchhhHHHHHHHhh
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (391)
                      +.+.....++..++.+++++++||+|+|+.+..+.++.++..+...+  .++.+.+++..++.|++.+...+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566667778889999999999999999999887766654443322  3567777888899999999999999999999


Q ss_pred             cCCc-------cccchHHHHHHHHHHHHHHHHHHhcccccccc
Q 016350          169 VSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (391)
Q Consensus       169 ~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (391)
                      ..+.       +..|...+.......+|..+|+.+++.+.+..
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8862       23455678888888888888888877765543

>PRK11043 putative transporter; Provisional

Probab=98.97  E-value=1.3e-08  Score=92.91  Aligned_cols=129  Identities=11%  Similarity=0.025  Sum_probs=97.7

Q ss_pred             hHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH---Hh--hhhHHHHHHH
Q 016350           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---AT--TRNLIGMLLG  147 (391)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~--~~~~~~l~~~  147 (391)
                      ..|.+.+++|.+.++.  |+....+.++..++.+..+++.||+|+|+.+.......+++.+..   ..  .++...+++.
T Consensus       225 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        225 GSPFILEQMGYSPADI--GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            4577777888877666  777777888889999999999999999997766655554444332   22  3455556666


Q ss_pred             HHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc
Q 016350          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (391)
Q Consensus       148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (391)
                      ..+.|++.+..++.......|..| ++|+++.++.+.....+...++.+.+.+.+..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP  358 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            778888888888888887777775 57999999999887878788888877777644

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.97  E-value=9.4e-09  Score=93.50  Aligned_cols=134  Identities=14%  Similarity=-0.024  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh-h-----hhHHHHHHHHHHhhhccchhhHHHHHHHh
Q 016350           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-T-----RNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (391)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  167 (391)
                      ..+..+...+..+++|+++||+|+|+++..+.+...++...... .     .+++.+.+.-+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            33445677888999999999999999999998877777643221 1     24555555444444444444445556666


Q ss_pred             hcCCc---------------------cccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhh
Q 016350          168 EVSPP---------------------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (391)
Q Consensus       168 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~  226 (391)
                      +.+|+                     ++-|.+.|+.+....+|..+.|.+-+...+..|.+...|+...+..++++++.+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            66663                     146678888888889988888866666666555588888887777777666554


Q ss_pred             c
Q 016350          227 F  227 (391)
Q Consensus       227 ~  227 (391)
                      +
T Consensus       452 ~  452 (462)
T PRK15034        452 L  452 (462)
T ss_pred             H
Confidence            3

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.95  E-value=7.9e-09  Score=90.73  Aligned_cols=147  Identities=12%  Similarity=0.113  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc----chhhHHHHHh-hHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQLC-ALP  127 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~-~~~  127 (391)
                      ++.+....+-..+.+..-....|++.+++|+.....  +.+--..-+...+.+|+.|..+||    |||||.++.. .+.
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            334444444444555555567788888899876554  444444455567889999999995    9998877664 555


Q ss_pred             HHHHHHHHHhhhhHH-----------------HHHHHHHHhhhccchhhHHHHHHHhhcCCccccch-HHHHHHHHHHHH
Q 016350          128 MIIGASISATTRNLI-----------------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT-YGAFIQIATCLG  189 (391)
Q Consensus       128 ~~i~~~~~~~~~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g  189 (391)
                      .+++.++..++.++.                 .++++--+.=++.-.....+-++++|...++++.+ +.+.+....++|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            666666777765543                 33334444445566777888899999998777777 999999999999


Q ss_pred             HHHHHHhccccc
Q 016350          190 LMGSLLIGIPVK  201 (391)
Q Consensus       190 ~~~~~~~~~~l~  201 (391)
                      ..+|...++++.
T Consensus       192 nvLGY~~g~y~~  203 (498)
T KOG0637|consen  192 NVLGYALGSYLG  203 (498)
T ss_pred             ceeeeecccccC
Confidence            999999988544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.89  E-value=1.3e-07  Score=80.97  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=125.6

Q ss_pred             hcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhHHHHHHHHHHHhhhhHHHHHH
Q 016350           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (391)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~  146 (391)
                      +.....+|.+..|-|+|..+.  |++.+...+.....++....+.+| -.+|+..+....++.++.+.+.+.+.-..+.-
T Consensus       225 Y~~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw  302 (395)
T COG2807         225 YIVIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW  302 (395)
T ss_pred             HHHHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            334557899999999998888  999999999999999999999995 56788888888888888888877765433333


Q ss_pred             HHHHhhhccchhhHHHHHHHhhcCC-ccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh
Q 016350          147 GRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       147 ~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                       -++.|+|.|..++.....+.+..+ +++-++..++.+....+=..+||.+.|++-|..|+|+......+...+...+.-
T Consensus       303 -~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G  381 (395)
T COG2807         303 -ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG  381 (395)
T ss_pred             -HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence             499999999999999999998876 455566666666666666788999999999988889999888777766665554


Q ss_pred             hc
Q 016350          226 VF  227 (391)
Q Consensus       226 ~~  227 (391)
                      +.
T Consensus       382 l~  383 (395)
T COG2807         382 LR  383 (395)
T ss_pred             hh
Confidence            43

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.88  E-value=7.6e-08  Score=89.60  Aligned_cols=134  Identities=13%  Similarity=-0.016  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----hhhc-chhhHHH--HHhhHHHHHHHHHHHh---------hhhHHHHHHHHHHhhhc
Q 016350           91 GLVVSMCLGGAFIGSTLSGW----IADG-VGRRRAF--QLCALPMIIGASISAT---------TRNLIGMLLGRFVVGTG  154 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~----l~dr-~Grr~~l--~~~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~  154 (391)
                      +++.++..+...+.+++..+    +.|| .+.+...  .+|.++.+++.+..++         ..|++++++..++.|+|
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            67888887777788777554    4443 2333333  7788888888777764         46899999999999999


Q ss_pred             cchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh
Q 016350          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       155 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                      .....|...+++.+..|++.||+++|++.....+|..+++.+........+ |...|...++..++..+..
T Consensus       395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988887666556 7777777666555554444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.88  E-value=3.9e-08  Score=89.82  Aligned_cols=154  Identities=8%  Similarity=-0.086  Sum_probs=107.1

Q ss_pred             HHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHH
Q 016350           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (391)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  136 (391)
                      .++.++...........++.+.++.+.+.++...+...+.+..+..+|.++++++.||+++|+++.++..+..+..++..
T Consensus       238 ~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~  317 (410)
T TIGR00885       238 VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI  317 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            33334333333333455666666543332222214456666678899999999999999999999999999888888888


Q ss_pred             hhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc-----chhHHHH
Q 016350          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-----GWWRICF  211 (391)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~w~~~f  211 (391)
                      +.++... ...-++.|++.+..+|...+...+..+++.+....++...  .+|..+.|.+.|.+.|..     ++.+..|
T Consensus       318 ~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~  394 (410)
T TIGR00885       318 FAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSF  394 (410)
T ss_pred             HcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHH
Confidence            8777544 5667788888999999999999999876654333333333  389999999999999853     2256666


Q ss_pred             HH
Q 016350          212 WV  213 (391)
Q Consensus       212 ~~  213 (391)
                      ++
T Consensus       395 ~~  396 (410)
T TIGR00885       395 IL  396 (410)
T ss_pred             HH
Confidence            65

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.85  E-value=6e-08  Score=88.82  Aligned_cols=171  Identities=15%  Similarity=0.078  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh---------hHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR---------RRA  120 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr---------r~~  120 (391)
                      ..++.++++.+........+...+|.+.+ -+|.+..+.  |++.++..+...+..+++|.++||.-+         |..
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif  335 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF  335 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence            45677888888888888888888886666 478887777  999999999999999999999998744         333


Q ss_pred             HHHhhHHHHHHHHHHHhhhh--H-H---HHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHH
Q 016350          121 FQLCALPMIIGASISATTRN--L-I---GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (391)
Q Consensus       121 l~~~~~~~~i~~~~~~~~~~--~-~---~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  194 (391)
                      -.++....+++.+..++.++  . .   .+.++-.+.|+..++.+    .-..|. .|++-+..+|+.+....+..+++|
T Consensus       336 n~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P  410 (466)
T KOG2532|consen  336 NTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY----KNHQDI-APQHAGFVMGIINFVGALAGFIAP  410 (466)
T ss_pred             HhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH----hhhhhc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence            44455556666666666552  1 1   12222233333333332    222333 457789999999999999999999


Q ss_pred             Hhcccccccc--chhHHHHHHHHHHHHHHHHHhhcc
Q 016350          195 LIGIPVKEIA--GWWRICFWVSIVPAAILCLAMVFC  228 (391)
Q Consensus       195 ~~~~~l~~~~--~~w~~~f~~~~~~~~~~~~~~~~~  228 (391)
                      .+.+.+.+..  ..||++|++.+++.++..+.+.++
T Consensus       411 ~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  411 LLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            9999988522  239999999888888776655444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.85  E-value=3.6e-09  Score=92.87  Aligned_cols=177  Identities=16%  Similarity=0.052  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHH------HHHHHHHH-HHHHHHHHHHHHhhhcchhhHHHHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE------GLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQL  123 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~  123 (391)
                      +.++..+...|+........+.....+.+..++.+++...      +-...+.. .++.-|..+...++|+.|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4556666777777777777788888899988876554321      11122222 2223366667789999999999999


Q ss_pred             hhHHHHHHHHHHHhhhh--------HHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHH
Q 016350          124 CALPMIIGASISATTRN--------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (391)
Q Consensus       124 ~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  195 (391)
                      +.+++++..+..+...|        .....+..++.-+|-+.   +...+-+|.+|.+.|+.+-|+..+..-.|++++..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~---ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNA---TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCc---eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999999999988877        12223334444443222   33456799999999999999999999999999999


Q ss_pred             hcccccc-----ccchhHHHHHHHHHHHHHHHHHhhccccc
Q 016350          196 IGIPVKE-----IAGWWRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       196 ~~~~l~~-----~~~~w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      .-..+.+     ..+ -|+.|++.+...++..+..+++||+
T Consensus       461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPET  500 (538)
T ss_pred             HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecc
Confidence            9888887     556 7999999999999999999999998

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.84  E-value=1.5e-07  Score=88.11  Aligned_cols=133  Identities=9%  Similarity=-0.001  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHhhhcchhhHHHHHhhHHHHHHHHHHHhhhh---------HHHHHHHHHHhhhccch
Q 016350           91 GLVVSMCLGGAFIGSTLS----GWIADGVGRRRAFQLCALPMIIGASISATTRN---------LIGMLLGRFVVGTGMGL  157 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~---------~~~l~~~r~l~G~~~g~  157 (391)
                      ++..++..+...+..++.    +++.||++.++.+.+|.++.+++.+..+++.+         .++++...++.|+|.+.
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            466666665555555555    77777777778899999999999988877765         45788899999999999


Q ss_pred             hhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc-----c-----ccchhHHHHHHHHHHHHHHHHH
Q 016350          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-----E-----IAGWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----~-----~~~~w~~~f~~~~~~~~~~~~~  224 (391)
                      ..|....++.+..|++.||+++|.+..+..+|..++..+.....     .     ..+ .++.|...++.+++..++
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEV-YGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhh-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888777766653211     1     112 467777666655544333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=2e-08  Score=86.65  Aligned_cols=170  Identities=16%  Similarity=0.105  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch--hhHHHHHhhHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMI  129 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~  129 (391)
                      +.+........+......-|.++. +.|.+..+.-+.  |+..--..+.++++..+.|.++||++  |-.....+++..+
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~--G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G  349 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEV--GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVG  349 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcce--eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHH
Confidence            344444445556666677788776 555565332244  55555567888999999999999999  5455555677777


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc------ccchHHHHHHHHHHHHHHHHHHhccccccc
Q 016350          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF------VRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (391)
                      +.+....+++++.++.+-++..|++.+...........+..+.+      ..|...++...++.+|..+||.+++.+.+.
T Consensus       350 ~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~  429 (464)
T KOG3764|consen  350 VSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA  429 (464)
T ss_pred             HHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee
Confidence            77777889999999999999999988888776666666666543      346788999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHh
Q 016350          204 AGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                      .| ++|.-.+.++..++...++
T Consensus       430 iG-F~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  430 IG-FEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             hh-HHHHHHHHHHHHHHHHHHH
Confidence            99 8998888777777654444

>TIGR00788 fbt folate/biopterin transporter

Probab=98.78  E-value=4.4e-08  Score=90.91  Aligned_cols=125  Identities=14%  Similarity=0.046  Sum_probs=106.7

Q ss_pred             hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhh----------hhHHHHHHHH
Q 016350           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----------RNLIGMLLGR  148 (391)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~~r  148 (391)
                      +.+|.++++.  |++.....++..++....+++.+|++.|+++..+.++.+++.+.....          ++.+..+..-
T Consensus       281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            4678887777  899999999999999999999999999999999999998887654311          3333455567


Q ss_pred             HHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      ++.+++.+........++.+..|++++|+..++.....++|..+++.+++.+.+..|
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            888999999988889999999999999999999999999999999999988876554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.77  E-value=2.4e-07  Score=83.49  Aligned_cols=142  Identities=15%  Similarity=0.154  Sum_probs=101.0

Q ss_pred             HHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHH
Q 016350           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (391)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  136 (391)
                      ++..++........+.....+ -++.++.++....+.......+..++.+++.++.+|+|+|+++..+.++..++.++.-
T Consensus       242 l~~~l~~~~~~~i~~s~~~yy-~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~  320 (467)
T COG2211         242 LLMNLLLFIAFNIRGSIMVYY-VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY  320 (467)
T ss_pred             HHHHHHHHHHHHHHhhhhhee-EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            334444444444333343333 3345666666556777777778888899999999999999999999999999999988


Q ss_pred             hhh--hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc-------cccchHHHHHHHHHHHHHHHHHHhccc
Q 016350          137 TTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIP  199 (391)
Q Consensus       137 ~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~  199 (391)
                      +.+  +....++..++.++|.+...+...++++|..+-       +.-|...+......=+|..++..+.++
T Consensus       321 f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         321 FTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             hhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            876  788888899999999999999999999887652       223445555555555555555544443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.75  E-value=5.4e-08  Score=65.36  Aligned_cols=80  Identities=18%  Similarity=0.164  Sum_probs=73.9

Q ss_pred             hhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHH
Q 016350           63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI  142 (391)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~  142 (391)
                      .+..+..+.|.+|.+++|.++|.++.  |++.+...+||.+|.+...++.++..+++.+..+++...+..+.+++.++++
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            46678888999999999999998888  9999999999999999999999998999999999999999999999998876


Q ss_pred             HH
Q 016350          143 GM  144 (391)
Q Consensus       143 ~l  144 (391)
                      ..
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            54

Note that many members are hypothetical proteins.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=4.7e-06  Score=75.30  Aligned_cols=106  Identities=13%  Similarity=-0.071  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc
Q 016350           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (391)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  173 (391)
                      .++....+.+++++.+.+.|+.|+|..++++..+.....+..-+ +|-+-++++-.+.|+|.+..+...-.+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            66667778899999999999999999999999988887766544 45667888999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccc
Q 016350          174 VRGTYGAFIQIATCLGLMGSLLIGIPV  200 (391)
Q Consensus       174 ~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (391)
                      .+.+..++.......+.++|..+...+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            999999998888888888886665443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.74  E-value=2.7e-08  Score=89.18  Aligned_cols=164  Identities=22%  Similarity=0.161  Sum_probs=134.8

Q ss_pred             HHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh
Q 016350           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (391)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  139 (391)
                      ..+.+.....+...+---.||.+..+.-.  |........+-.+.-++.+++.+++|+-+++..++.+..+=.+..+..+
T Consensus       380 av~mG~g~~lv~tFLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~  457 (618)
T KOG3762|consen  380 AVVMGAGVGLVFTFLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ  457 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc
Confidence            33344444444444444556666443333  7667777778888999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHH-HHHHHHHHHHHHhccccccccchhHHHHHHHHHHH
Q 016350          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (391)
Q Consensus       140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~  218 (391)
                      |.|+.+...+++|+..+..+.+..+|+++..||+.|..+.++.+ ...++|--+|.++||.+....+ =|..|.+.++.+
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAc  536 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIAC  536 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999985 6778899999999999999988 588888887777


Q ss_pred             HHHHHHhh
Q 016350          219 AILCLAMV  226 (391)
Q Consensus       219 ~~~~~~~~  226 (391)
                      ++..+...
T Consensus       537 l~~l~~~~  544 (618)
T KOG3762|consen  537 LVTLALFI  544 (618)
T ss_pred             HHHHHHHH
Confidence            77655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.73  E-value=8.3e-07  Score=80.94  Aligned_cols=126  Identities=17%  Similarity=0.160  Sum_probs=92.6

Q ss_pred             hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHH-HHHHHHHh--hhhHHHHHHHHHHhhh
Q 016350           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI-IGASISAT--TRNLIGMLLGRFVVGT  153 (391)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~-i~~~~~~~--~~~~~~l~~~r~l~G~  153 (391)
                      +.+.+|.+..+.  +++.....++..++.++.+++.||+|++........... +.......  ..+.+.+++..++.|+
T Consensus       234 ~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (394)
T PRK11652        234 MGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFF  311 (394)
T ss_pred             HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            334478776655  888888888889999999999999984443322222222 22222222  2355667778899999


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      +.+...+....+..|.+| ++++++.++.+....+|..+++.+++.+.....
T Consensus       312 g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~  362 (394)
T PRK11652        312 GAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQ  362 (394)
T ss_pred             HHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence            999999999999999886 578999999999999999999999888766543

>PRK11462 putative transporter; Provisional

Probab=98.69  E-value=1e-06  Score=81.79  Aligned_cols=111  Identities=17%  Similarity=0.011  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh--hHHHHHHHHHHhhhccchhhHHHHHHHhh
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (391)
                      +.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+  +...+++.-++.|++.+...+...++++|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888899999999999999999987765554444344333322  23234445566788777777777777887


Q ss_pred             cCCc-----ccc--chHHHHHHHHHHHHHHHHHHhccccc
Q 016350          169 VSPP-----FVR--GTYGAFIQIATCLGLMGSLLIGIPVK  201 (391)
Q Consensus       169 ~~~~-----~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (391)
                      ..+.     .+|  |...+......-+|..+++.+++.+.
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7652     133  44445555666666666665554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.64  E-value=6.7e-08  Score=87.13  Aligned_cols=116  Identities=17%  Similarity=0.146  Sum_probs=81.1

Q ss_pred             cchHHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh--hh--hHHHHH
Q 016350           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TR--NLIGML  145 (391)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~--~~~~l~  145 (391)
                      ....|.+. +.+|.+..+.  +++.+.+.++..++.+++|+++||+|||+.+..+......+..+..+  .+  +.....
T Consensus       245 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (366)
T TIGR00886       245 SSIFAMFFKDQFGLSKVTA--GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFI  322 (366)
T ss_pred             HHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence            34445444 5578877666  78888888899999999999999999998888777666666555443  22  455444


Q ss_pred             HHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHH
Q 016350          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG  189 (391)
Q Consensus       146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  189 (391)
                      +.-.+.+++.|...+....++.|..| +++|.+.|+.+....+|
T Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       323 VLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            44444444455555555567778776 68999999988766554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.63  E-value=3.7e-07  Score=79.39  Aligned_cols=168  Identities=14%  Similarity=0.114  Sum_probs=127.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHH
Q 016350           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (391)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  127 (391)
                      +.+.+....++.|++.-........++.+.+| .|+++.+.  +...+.+..+..+|.++..++..|+...|++....++
T Consensus       234 ~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a--a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~  311 (422)
T COG0738         234 QNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA--AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALI  311 (422)
T ss_pred             hChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            34456666677777766666677778877777 77776666  7889999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchh
Q 016350          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (391)
Q Consensus       128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (391)
                      ..+.++..+++++... +.+-++.|+..+..+|+..+...+..| ++ ....|..-....+|..+.|.+-|++.+..+ -
T Consensus       312 ~ill~~~~~l~~g~v~-~~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~  387 (422)
T COG0738         312 AILLLLAVALIGGVVA-LYALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFG-I  387 (422)
T ss_pred             HHHHHHHHHHhcChHH-HHHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhh-h
Confidence            8888888888888444 345678888899999999999999998 33 334444445556788888888899999888 4


Q ss_pred             HHHHHHHHHHHHHHH
Q 016350          208 RICFWVSIVPAAILC  222 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~  222 (391)
                      ...+.....++.+.+
T Consensus       388 ~~~~~~~pllc~lyV  402 (422)
T COG0738         388 QLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666553333333333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.62  E-value=1e-06  Score=82.18  Aligned_cols=135  Identities=10%  Similarity=0.003  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHH-------HHHhhHHHHHHHHHHH-----hh-----hhHHHHHHHHHHhhh
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRA-------FQLCALPMIIGASISA-----TT-----RNLIGMLLGRFVVGT  153 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-------l~~~~~~~~i~~~~~~-----~~-----~~~~~l~~~r~l~G~  153 (391)
                      +++.+...+...+..++.+++.||+|+|+.       +.+|+++.+++.+..+     ++     .++++++..-++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            466666667777889999999999999973       6677777776654321     21     356778888999999


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc---------ccchhHHHHHHHHHHHHHHHHH
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---------IAGWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~~~w~~~f~~~~~~~~~~~~~  224 (391)
                      |.+...+....++.+..|++.++.++|++.....+|..++..++.....         ..+...+.|...++..++..+.
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988887754421         0111355666655555554444


Q ss_pred             h
Q 016350          225 M  225 (391)
Q Consensus       225 ~  225 (391)
                      +
T Consensus       472 ~  472 (489)
T PRK10207        472 M  472 (489)
T ss_pred             H
Confidence            3

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.60  E-value=1.6e-06  Score=76.16  Aligned_cols=146  Identities=15%  Similarity=0.204  Sum_probs=117.8

Q ss_pred             HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhHHHHHhhHHHHHHHHHH---HhhhhHHHHHHHHHHhhh
Q 016350           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASIS---ATTRNLIGMLLGRFVVGT  153 (391)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~  153 (391)
                      .+-||++.++.  ..++..+..|..++-...|++.. |.++|+.-..++....++..+.   +...+.+.+...-++.|+
T Consensus       236 g~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~  313 (403)
T PF03209_consen  236 GEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL  313 (403)
T ss_pred             hHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            44589998887  78899999999999999998877 7888888878888777776654   344678888899999999


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc---------hhHHHHHHHHHHHHHHHHH
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---------WWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---------~w~~~f~~~~~~~~~~~~~  224 (391)
                      +.|.......+..-|...+++.|..+|.++..+.++..++..+|+.+.|...         .|..+|.+-++..++.+++
T Consensus       314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887654221         2566777766655555444


Q ss_pred             h
Q 016350          225 M  225 (391)
Q Consensus       225 ~  225 (391)
                      .
T Consensus       394 l  394 (403)
T PF03209_consen  394 L  394 (403)
T ss_pred             H
Confidence            4

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.56  E-value=4.1e-05  Score=69.29  Aligned_cols=304  Identities=15%  Similarity=0.036  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHH----HHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCL----GGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~----~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      ...+..++++...+.-+.....|-+..+...  +..   +..++|.    +...+.++..|.+.||..|.++.-.+.+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p--~sL---l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q   78 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFP--GSL---LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ   78 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCc---HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence            3456667777777777767777777776642  222   3344443    344577888889999999999877776555


Q ss_pred             HHHHHHHHhh--------h----hHHHH---HHHHHHhhhccchh-hHHHHHHHhhcCC------ccccchHHHHHHHHH
Q 016350          129 IIGASISATT--------R----NLIGM---LLGRFVVGTGMGLG-PTVAALYVTEVSP------PFVRGTYGAFIQIAT  186 (391)
Q Consensus       129 ~i~~~~~~~~--------~----~~~~l---~~~r~l~G~~~g~~-~~~~~~~i~~~~~------~~~r~~~~~~~~~~~  186 (391)
                      -++-.+++..        +    +-+..   ++.-.+.|.-.-.. .....++--||..      ++.+.+..+...-.-
T Consensus        79 n~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRID  158 (432)
T PF06963_consen   79 NLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRID  158 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHH
Confidence            4433332211        1    01111   11111222111111 1111222234532      333444455555555


Q ss_pred             HHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh-hc----cccchhHHHHcCCHHHHHHHHHHHhCCCCchhHH
Q 016350          187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VF----CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL  261 (391)
Q Consensus       187 ~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (391)
                      -+..+++|++.|.+.+..+ .+....+.+...++..+.= ++    ....|+-..++.++++..+....  .........
T Consensus       159 L~ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~--~~~~~~~~~  235 (432)
T PF06963_consen  159 LFCKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEE--SSSESSSDP  235 (432)
T ss_pred             HHHHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccccccc--ccccccchh
Confidence            5678999999999988777 5665555555444433322 11    12223211111111110000000  000000000


Q ss_pred             HHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q 016350          262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVA  341 (391)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (391)
                      ...++..+.-......|+..++.+.+...+...++++ ...+.......|+... +.++...|..-....+.++.|.++.
T Consensus       236 ~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~-TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~  313 (432)
T PF06963_consen  236 SILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYF-TVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVY  313 (432)
T ss_pred             hHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHH-HHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000001111112345666777666655444444443 3333344445555443 4444445667777888899999999


Q ss_pred             HHHHhhhCchHHHHHHHHHHHHHHH
Q 016350          342 MVLMDKLGRKALLQWSFFSMAVSMA  366 (391)
Q Consensus       342 g~l~d~~~~~~~~~~~~~~~~~~~~  366 (391)
                      .++.+|+|..+.-..+......++.
T Consensus       314 p~l~~riGlvr~G~~~l~~q~~~L~  338 (432)
T PF06963_consen  314 PWLMKRIGLVRAGLWSLWWQWVCLA  338 (432)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHH
Confidence            9999999988777776665544433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.56  E-value=3.5e-06  Score=64.76  Aligned_cols=106  Identities=17%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc
Q 016350           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (391)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  173 (391)
                      .++......+.+++.+.+.+++|.|+.+++|.+...+-... -+-++.+.++.+-++.|++.+..++....++.+..+++
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            45555667788899999999999999999999988864443 35677889999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccc
Q 016350          174 VRGTYGAFIQIATCLGLMGSLLIGIPV  200 (391)
Q Consensus       174 ~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (391)
                      +|++..++.......+.++|.++...+
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888888888887765443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.55  E-value=3.2e-06  Score=80.10  Aligned_cols=140  Identities=17%  Similarity=0.153  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHH---HHHHHHHhhhccchhhHHHHHHHhh
Q 016350           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAALYVTE  168 (391)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~---l~~~r~l~G~~~g~~~~~~~~~i~~  168 (391)
                      +................+...|++|||.....+.++..++.+..++..+...   ..+...+...+.+..+.....+.+|
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  433 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE  433 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444444555666689999999999999999999999999988865443   5555666666677777777899999


Q ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhccccch
Q 016350          169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (391)
Q Consensus       169 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~  232 (391)
                      .+|...|+.+.+.......+|.+++|.+-.........+.... ......+...+...++||+.
T Consensus       434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL-FGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHhcCcccC
Confidence            9999999999999999999999999988755444221122222 22333333444558889984

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.37  E-value=0.00023  Score=65.63  Aligned_cols=285  Identities=9%  Similarity=0.058  Sum_probs=146.4

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhcc---CcchhHHHHHHHHHHH-HHHHHHHHHHHhhhcchhhHHHH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF---NGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQ  122 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~  122 (391)
                      +..++.++.+.+..++..++.+..    -++.+.+=+   +.+.+  .++-....+ ...+......+++++++|.+++-
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I--~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy   93 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVI--PFLKVWGVLPVAILFTILYSKLSNRLSREKLFY   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            344555556666666655555432    222222211   22222  444443333 44566778999999999999888


Q ss_pred             HhhHHHHHHHHHHHhh---------hh----------------------HHHHHHHHHHhhhccchhhH-HHHHHHhhcC
Q 016350          123 LCALPMIIGASISATT---------RN----------------------LIGMLLGRFVVGTGMGLGPT-VAALYVTEVS  170 (391)
Q Consensus       123 ~~~~~~~i~~~~~~~~---------~~----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~  170 (391)
                      +....+...-.+.++.         ++                      .|...+.-+..-+-.....+ .-..+..|.+
T Consensus        94 ~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~it  173 (491)
T PF03219_consen   94 IIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEIT  173 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7766666555555542         11                      12222222333332233333 4578889999


Q ss_pred             CccccchHHHHHHHHHHHHHHHHHHhcccccc--------ccchhHHHHHH-HHHHHHHH---HHHhhccccchhHHHHc
Q 016350          171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE--------IAGWWRICFWV-SIVPAAIL---CLAMVFCAESPHWLYKK  238 (391)
Q Consensus       171 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~~~w~~~f~~-~~~~~~~~---~~~~~~~~e~~~~~~~~  238 (391)
                      +.+|-.|..++.+.+.++|.+++..+...+.+        ....|...... .++..+..   .....++.+.   ...+
T Consensus       174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~---vl~~  250 (491)
T PF03219_consen  174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKN---VLTD  250 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCc
Confidence            99999999999999999999988888777766        11125543322 22222222   1122222110   0000


Q ss_pred             CCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhh
Q 016350          239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS  318 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      ++..+..                 ...+.++.+..-..+.+.++++|....+.+...++...........-....+.+..
T Consensus       251 ~~~~~~~-----------------~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~  313 (491)
T PF03219_consen  251 PRFYPSA-----------------KKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPD  313 (491)
T ss_pred             cccchhh-----------------hcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            0000000                 00001112222234556677777777666655555444333222222222222211


Q ss_pred             cCCC---hhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHH
Q 016350          319 AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (391)
Q Consensus       319 ~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  357 (391)
                      ...-   .|......++..++..++++.+.+|+|-+....+.
T Consensus       314 ~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  314 PNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            1110   23355566777777778899999999987766553

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.35  E-value=2.2e-05  Score=72.02  Aligned_cols=143  Identities=15%  Similarity=0.143  Sum_probs=89.3

Q ss_pred             chHHHhHh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHH-----hhhhHHHHH
Q 016350           72 EPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-----TTRNLIGML  145 (391)
Q Consensus        72 ~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~-----~~~~~~~l~  145 (391)
                      ...|.+.+ .+|.+..+.  ++.......+..+++.+.+.+.++.++++.......+..++.++..     ..+++...+
T Consensus       239 ~~~P~~l~~~~g~s~~~~--gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~  316 (413)
T PRK15403        239 AVSPVILIDAGGMTTSQF--AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSV  316 (413)
T ss_pred             HhChHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHH
Confidence            34565554 458877766  7877777778888888888876544444433322223333332222     123444456


Q ss_pred             HHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016350          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (391)
Q Consensus       146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~  219 (391)
                      +..++.|+|.+...+......- .-....+|++.++.+.....+..+++..++++.++..  ++.|...++...
T Consensus       317 ~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~  387 (413)
T PRK15403        317 LGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGG--RLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHH
Confidence            7888889988888877764332 2223358999999998888888888888888766643  555555444333

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.35  E-value=1.9e-06  Score=57.53  Aligned_cols=70  Identities=24%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             HHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH
Q 016350           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (391)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  128 (391)
                      -..+++.....+...|.+|...++.|++..++  |.+.++..+...++++++|.++||+|+++..+....++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34456666667778899999999999998887  99999999999999999999999999999887766543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.31  E-value=9.3e-06  Score=74.72  Aligned_cols=140  Identities=14%  Similarity=0.062  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHhhHHHHHHHHHHHhhhh---------------------HHHHHHHHH
Q 016350           92 LVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISATTRN---------------------LIGMLLGRF  149 (391)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~~~~~---------------------~~~l~~~r~  149 (391)
                      |....+.+...+.+++..++.+|+| ||++..++.++.+++.+...+.++                     .+..++.-.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            4444455555577778889999999 477779998888888887776543                     366777889


Q ss_pred             HhhhccchhhHHHHHHHhhcCCc--cccchHHHHHHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHHHHHHHHHh-
Q 016350          150 VVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAM-  225 (391)
Q Consensus       150 l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w~~~f~~~~~~~~~~~~~~-  225 (391)
                      +.|+..+......++++++..++  ++.|..+|+.+.+..+..++..+..+.+.+..| .-.+.+.+.++..++..+.. 
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999985  455999999999999999988877776544333 23567777888887776655 


Q ss_pred             hccccc
Q 016350          226 VFCAES  231 (391)
Q Consensus       226 ~~~~e~  231 (391)
                      +.+|+.
T Consensus       469 ~~~~~~  474 (477)
T TIGR01301       469 ILLPRP  474 (477)
T ss_pred             HhCCCC
Confidence            446654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.29  E-value=7.3e-06  Score=67.31  Aligned_cols=266  Identities=16%  Similarity=0.189  Sum_probs=139.7

Q ss_pred             cccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q 016350           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (391)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (391)
                      ..+|..-.+.+.++....++  |.+....+-...+...+.|-++|+-|||+.-+.-++...++ .+.-.++.|..++++|
T Consensus        55 LQgPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs-CiTKhSpqYkVLmVGR  131 (454)
T KOG4332|consen   55 LQGPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS-CITKHSPQYKVLMVGR  131 (454)
T ss_pred             hcCceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH-HHhhcCCceEEEeehh
Confidence            34666777778888888877  55555555566777888999999999999644333333332 2344578899999999


Q ss_pred             HHhhhccchhhHHHHHH-HhhcCCccccchHHHHHH--------HHHHHHHHHHHHhccccccccc-hhHHHHHHHHHHH
Q 016350          149 FVVGTGMGLGPTVAALY-VTEVSPPFVRGTYGAFIQ--------IATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPA  218 (391)
Q Consensus       149 ~l~G~~~g~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~g~~~~~~~~~~l~~~~~-~w~~~f~~~~~~~  218 (391)
                      ++-|+..+..+.+.-++ ++|.-  ++|+.-.-+..        .++.+-.+++.+.+-.+.+..+ +--.+|-..+...
T Consensus       132 ~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfL  209 (454)
T KOG4332|consen  132 VLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFL  209 (454)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence            99999999988877665 55654  23443222211        2233334445555555554332 0233444433332


Q ss_pred             HHH-HHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHH
Q 016350          219 AIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLF  297 (391)
Q Consensus       219 ~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (391)
                      .+. .+..--      |-..-+++.|.++.+....+.                       .+.+..+++...+-....++
T Consensus       210 aigmAvil~~------W~ENygdps~~kdlltqf~ga-----------------------a~aiaSD~ki~LLG~iqsLF  260 (454)
T KOG4332|consen  210 AIGMAVILSS------WSENYGDPSENKDLLTQFKGA-----------------------ARAIASDEKIALLGAIQSLF  260 (454)
T ss_pred             HHHHHHHHhh------hhhccCChhhhHHHHHHhhHh-----------------------HHHHhcchHHHHHHHHHHHH
Confidence            222 222211      222234444444333332211                       11122223332222222222


Q ss_pred             HHHhhhc-hhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCc--hHHHHHHHHHHHHHHHHHHHH
Q 016350          298 ALQQLSG-INAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR--KALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       298 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~  371 (391)
                      -...+.. +-|.|...|   +..+..-|.++..+.++.++|+-+..++..|-..  ...+.+.+.+..+.+.+....
T Consensus       261 E~smytFVFLWTPaLsp---n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt  334 (454)
T KOG4332|consen  261 EGSMYTFVFLWTPALSP---NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILT  334 (454)
T ss_pred             hhhhheeeeeecccCCC---CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            2222221 112222222   1233445778888888888888887777665432  345555665555555554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.24  E-value=2.3e-05  Score=73.55  Aligned_cols=146  Identities=16%  Similarity=0.085  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHHhHhh-hccCcch-hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH-HHHhhHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNT-LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA-FQLCALP  127 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~  127 (391)
                      +.+.+..+..++.++.........|..... |+-+... ...++....+.++..++..+.|.+..+++|-|. ++++.++
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~  389 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL  389 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            445555556666666665555666655443 4433321 122678888888999999999999998887544 4566666


Q ss_pred             HHHHHHHHHh--hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHh
Q 016350          128 MIIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (391)
Q Consensus       128 ~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  196 (391)
                      +.++..+++.  .+|....+..-++.|++.|...........-..|+++-+.+.++....-.+|..+|..+
T Consensus       390 ~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  390 MTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             HHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            6654444333  34666667888999999999988888878888899999999998887777776666544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=98.21  E-value=2.1e-05  Score=74.13  Aligned_cols=178  Identities=12%  Similarity=-0.044  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhhh-ccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc---------chhhHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG---------VGRRRAF  121 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---------~Grr~~l  121 (391)
                      -++++++..+...-....+..-+.+|.+.+ |.+.+......+++++.++..+|-+..|.+...         +.|--.+
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l  433 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIAL  433 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHH
Confidence            355666666655555555555677888888 653333110236888888999999999987721         2222233


Q ss_pred             HHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHH-HHhcccc
Q 016350          122 QLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS-LLIGIPV  200 (391)
Q Consensus       122 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~l  200 (391)
                      .+..+ +.++.++.++.-....+++.-++.|++.|..++.....++|+|. |+-|+-..+......+|..+- ..+.|.+
T Consensus       434 ~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~  511 (591)
T PTZ00207        434 FIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEW  511 (591)
T ss_pred             HHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            33444 66666666666444789999999999999999999999999999 889999888888888887665 4555555


Q ss_pred             ccccc----h--------hHHHHHHHHHHHHHHHHHh-hccccc
Q 016350          201 KEIAG----W--------WRICFWVSIVPAAILCLAM-VFCAES  231 (391)
Q Consensus       201 ~~~~~----~--------w~~~f~~~~~~~~~~~~~~-~~~~e~  231 (391)
                      .+...    .        .|..|++.+..++...+.. +..-++
T Consensus       512 Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~  555 (591)
T PTZ00207        512 YTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY  555 (591)
T ss_pred             HHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence            43221    1        6778888777777665544 333344

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.19  E-value=0.0014  Score=59.15  Aligned_cols=288  Identities=11%  Similarity=0.059  Sum_probs=155.9

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcc-hhHHHHHHHHHHH-HHHHHHHHHHHhhhcchhhHHHHHh
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGN-TLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQLC  124 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~  124 (391)
                      +..+..++.+.+..+...++.+    .+-.+.+.+.++.. ...++++-+..-+ +..+..++.+++.+++.|.+++-..
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~   98 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            3445555555555555555554    34445666655421 1223677777766 6678899999999999999998888


Q ss_pred             hHHHHHHHHHHHhh---------hh-----------------------HHHHHHHHHHhhhccchhhH-HHHHHHhhcCC
Q 016350          125 ALPMIIGASISATT---------RN-----------------------LIGMLLGRFVVGTGMGLGPT-VAALYVTEVSP  171 (391)
Q Consensus       125 ~~~~~i~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~  171 (391)
                      +..+...-+++++.         ++                       .|...+.-.+.=+=...... .-.....|.+.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt  178 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77777777776653         11                       02222222222221222222 44567789999


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhccccccccch---------hHHHHHHHHHHHHHHHHHhhc----cccchhHHHHc
Q 016350          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---------WRICFWVSIVPAAILCLAMVF----CAESPHWLYKK  238 (391)
Q Consensus       172 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~---------w~~~f~~~~~~~~~~~~~~~~----~~e~~~~~~~~  238 (391)
                      .++-.|..++++.+.+++..++..+..++......         -+..+.+.+..+++++.+..+    .+++|+....+
T Consensus       179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~  258 (509)
T COG3202         179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRA  258 (509)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHH
Confidence            99999999999999999999988888887764321         122333333333333333322    22333322110


Q ss_pred             CCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhh
Q 016350          239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS  318 (391)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (391)
                      .+++                       +.++.+..-..+.+-+.++|....+.+...++..+......   .+-..+...
T Consensus       259 ~~kk-----------------------~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~---~wKs~ik~~  312 (509)
T COG3202         259 KKKK-----------------------KKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEG---VWKSGIKEL  312 (509)
T ss_pred             hccc-----------------------ccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence            0000                       00011111223444556677776665555554443322221   222222111


Q ss_pred             cCCC------hhHHHHHHHHH-HHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 016350          319 AGLS------SGLANVFVGIA-NLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  364 (391)
Q Consensus       319 ~~~~------~~~~~~~~~~~-~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  364 (391)
                      .+..      .+......++. .++...+++-+.+|.|-....++.-+++.++
T Consensus       313 ~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit  365 (509)
T COG3202         313 YPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT  365 (509)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1111      12244555555 5566778889999998776666554444444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.17  E-value=0.00018  Score=62.36  Aligned_cols=151  Identities=12%  Similarity=0.085  Sum_probs=98.4

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-----cchhhHH
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRA  120 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~  120 (391)
                      .+...+.+..+.+.+.+.+...+... .+|.+.+.-|.|.++.  +...-+| ..+ ---+.|.++.|     |+||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~fS~ay-~P~-sLKllWaPiVDs~y~k~~Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccc
Confidence            45556667778888888888888877 8999999888877665  3332222 222 34577889999     9999987


Q ss_pred             HHH-hhHHHHHHHHHHHh-----------hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHH
Q 016350          121 FQL-CALPMIIGASISAT-----------TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL  188 (391)
Q Consensus       121 l~~-~~~~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  188 (391)
                      .++ +..+.+..+...+.           .++...+....++.-+.++.--.+.-.+.-.+..+++-|-+......+...
T Consensus       101 Wvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~  180 (510)
T KOG3574|consen  101 WVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTA  180 (510)
T ss_pred             eeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhh
Confidence            554 44444444444332           234444444556666666666666666667777788887777777777777


Q ss_pred             HHHHHHHhccccc
Q 016350          189 GLMGSLLIGIPVK  201 (391)
Q Consensus       189 g~~~~~~~~~~l~  201 (391)
                      |..++..+--.+.
T Consensus       181 GyfL~~~ifLaL~  193 (510)
T KOG3574|consen  181 GYFLGNVVFLALE  193 (510)
T ss_pred             hHHhhcceeeEec
Confidence            7766665544433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.11  E-value=9.2e-05  Score=68.47  Aligned_cols=159  Identities=16%  Similarity=0.091  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc----chhhHHHHHhhH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQLCAL  126 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~~  126 (391)
                      .++..++..+......+.....+|.+.++ .|.+..+.  ..+...+.++.+++.+++|+++||    ..+|........
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a--~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~  351 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA--NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC  351 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh--ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34566667777777777778889988888 34555555  788899999999999999999999    677777666665


Q ss_pred             HHHHHH-HHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccc-hHHHHHHHHHHHHH-HHHHHhccccccc
Q 016350          127 PMIIGA-SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRG-TYGAFIQIATCLGL-MGSLLIGIPVKEI  203 (391)
Q Consensus       127 ~~~i~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~-~~~~~~~~~~~~g~-~~~~~~~~~l~~~  203 (391)
                      +..+.. +.....++......+-+....+.....+.......+...++.|. ...+....+.+.+. +.++..-+...+.
T Consensus       352 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~  431 (495)
T KOG2533|consen  352 LYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR  431 (495)
T ss_pred             HHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence            555444 44444443444444444445556666667777777777654433 33444444444444 4444444445555


Q ss_pred             cchhHHHHHH
Q 016350          204 AGWWRICFWV  213 (391)
Q Consensus       204 ~~~w~~~f~~  213 (391)
                      ++ |.+.|..
T Consensus       432 y~-~~~~f~~  440 (495)
T KOG2533|consen  432 YG-WGAVFYM  440 (495)
T ss_pred             hh-hhhHHHH
Confidence            56 7888744

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.10  E-value=2.6e-05  Score=66.50  Aligned_cols=287  Identities=12%  Similarity=0.049  Sum_probs=157.6

Q ss_pred             HHHhH-hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 016350           74 LESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (391)
Q Consensus        74 ~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G  152 (391)
                      .|.+. .+.|+++++.. .=+.-...-.+.+.-.+.=.+.|..--|++++.-.+.......+.-+.++.+.+-+.-++.|
T Consensus        28 tpyl~gp~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG  106 (433)
T KOG3810|consen   28 TPYLLGPDKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYG  106 (433)
T ss_pred             chhccCCCCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcC
Confidence            34333 34566655442 12222333445566667778999999999998888888888888889999999988888888


Q ss_pred             hccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHHHHHHHHHhhccccc
Q 016350          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       153 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      ...+. ..+-++++-+..+|+++.++.+...+..-.|...|..++..+.+.... +...=.+......+..+..+++|..
T Consensus       107 ~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v  185 (433)
T KOG3810|consen  107 PATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRV  185 (433)
T ss_pred             hHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCC
Confidence            85443 457778888888999999999999999999998888888877765530 2223233333333344455777776


Q ss_pred             hhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHh
Q 016350          232 PHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF  311 (391)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (391)
                      ++...-+.++++..  ..+....+. +....+..+  ..-.....++.+..++|....-.+-..+.    .++++-...|
T Consensus       186 ~rSl~f~~~~~~~~--v~~~e~~~~-~~~~~~~l~--~~~~~l~~~l~~~y~np~ll~WSlWwAl~----scg~~QV~nY  256 (433)
T KOG3810|consen  186 KRSLYFHRLEDKIS--VGDLEEMNP-QASYMSYLR--GAFVLLWRDLQECYSNPRLLKWSLWWALA----SCGYYQVTNY  256 (433)
T ss_pred             chhhhhhcccccce--eccchhcCc-cchhhHHHH--HHHHHHHHHHHHHhcCchhhhhHHHHHHh----hchhHHHHHH
Confidence            54333222222110  000000000 000000000  00000011233344555443222222222    2233444555


Q ss_pred             HHHHHhhc-CCC----hhHHHHHHHHHHHHHHHHHHHHHhhhCch--HHHHHHHHHHHHHHHHHHHH
Q 016350          312 SSSVFKSA-GLS----SGLANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAVSMAIQVAA  371 (391)
Q Consensus       312 ~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~  371 (391)
                      .+..-+.- +..    .|..=....+.+.++.+..|++.-++.|+  .++.++.+..+...+.+...
T Consensus       257 ~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t  323 (433)
T KOG3810|consen  257 TQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT  323 (433)
T ss_pred             HHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc
Confidence            55544443 222    23455566677888888999987666654  23334444444444444433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.96  E-value=0.00013  Score=64.90  Aligned_cols=130  Identities=16%  Similarity=0.105  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 016350           93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP  172 (391)
Q Consensus        93 ~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  172 (391)
                      +.-+-.+...+.-+.+.+..+|+..+.=...+..++.++.++.++++|.+.-+++-++.+++.|........+ +..+++
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~  142 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK  142 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc
Confidence            4444445666777788889998876555566777888899999999999999999999999999998887776 445653


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHHHHHHHHHhhcc
Q 016350          173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAMVFC  228 (391)
Q Consensus       173 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w~~~f~~~~~~~~~~~~~~~~~  228 (391)
                          ..++-++.+.+.+.++|+..-..+.+ .+ .-|..+.+...+.++..+.++++
T Consensus       143 ----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  143 ----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             ----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence                34677777777777777766555554 33 13666666655555555544443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.93  E-value=0.00016  Score=66.45  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=104.9

Q ss_pred             HHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHH-HhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 016350           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG-WIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (391)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  153 (391)
                      -.....++++.++.  +...+.......+++.+.. .+...+|-|++...|+..-.+.....+++++.|++....++.++
T Consensus       266 ~yl~~~f~w~~~~~--s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~  343 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEF--SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL  343 (463)
T ss_pred             EEEeeecCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Confidence            34566788887777  7777777777777777777 78888999999999999999999999999999999999888887


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccc
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (391)
                       .+...+...+.++.+..++++|++.++......+..+++|.+-+.+
T Consensus       344 -~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  344 -AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             -hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence             5666678889999999999999999999999999988888776554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.89  E-value=0.00053  Score=63.63  Aligned_cols=110  Identities=19%  Similarity=0.159  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchh--h----H-HHHHhhHHHHHHHHHHHhh---------hhHHHHHHHHHHhhhc
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGR--R----R-AFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGTG  154 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Gr--r----~-~l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~  154 (391)
                      +|..++..+...+.+|+.+++-.|.+|  |    + =+.+|+++.+++.+...++         .+.+++++.-+++++|
T Consensus       311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            577888877777788887777666533  2    1 1567777777776655432         2567788999999999


Q ss_pred             cchhhHHHHHHHhhcCCccccchHHHHHHHH-HHHHHHHHHHhcccc
Q 016350          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIPV  200 (391)
Q Consensus       155 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l  200 (391)
                      .=...|...+++++..|++.||+.+|.+... ..+|..++..++...
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999764 367777777666554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.81  E-value=0.00017  Score=62.70  Aligned_cols=122  Identities=14%  Similarity=0.046  Sum_probs=102.4

Q ss_pred             hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch--hhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccc
Q 016350           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (391)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g  156 (391)
                      +.+|.++.+.  |-+.+...+...+.+....+..||..  -+-.+..++.++.=..++.+.++....+..+-.+-.+..+
T Consensus       290 ~rfg~ss~~~--G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A  367 (451)
T KOG2615|consen  290 GRFGYSSMQQ--GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA  367 (451)
T ss_pred             CccCCChhhh--eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence            5567666555  77777777888888888888999988  7777777777777777778888888888888888888888


Q ss_pred             hhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      ...+....++....|.++||.++|+......++-.+||+++|....
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            8877888888999999999999999999999999999999987664

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.68  E-value=0.00027  Score=63.83  Aligned_cols=109  Identities=11%  Similarity=0.148  Sum_probs=87.6

Q ss_pred             HHHHHhhHHHHHHHHHHHhhh---h------HHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc---ccchHHHHHHHHH
Q 016350          119 RAFQLCALPMIIGASISATTR---N------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF---VRGTYGAFIQIAT  186 (391)
Q Consensus       119 ~~l~~~~~~~~i~~~~~~~~~---~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  186 (391)
                      |+++.+.++..+|.++..++.   .      ...++++-++.++|.|+.-+....+++|-++++   +|.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888854442   2      257888899999999999999999999999865   4566788889999


Q ss_pred             HHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhcc
Q 016350          187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (391)
Q Consensus       187 ~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~  228 (391)
                      ++|..+++.+.+++.+..+ |.+.|.+.++..++.++.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHhC
Confidence            9999999999999998888 9999999887777766655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.68  E-value=0.00026  Score=63.10  Aligned_cols=107  Identities=19%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHH--H---HHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHH
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM--I---IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY  165 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~---i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  165 (391)
                      .+....|.+|-.++.--.    .-+--|++.+.+.+-.  .   +.....-+.++.+..++.-+..|+..|..++.....
T Consensus       284 ~~Y~~~YQ~GVFISRSS~----~~~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSL----PFFRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHhhhhcce----eeeehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            566667776655543322    1222344444433222  2   222233356788888899999999999999999999


Q ss_pred             HhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc
Q 016350          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (391)
Q Consensus       166 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (391)
                      +.|-.++++|-.++|....+-++|..++.+++-.+-
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998876543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.45  E-value=0.00075  Score=45.08  Aligned_cols=66  Identities=9%  Similarity=0.076  Sum_probs=44.1

Q ss_pred             HHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 016350          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (391)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (391)
                      .++.+....+...+++.|..+ .+.+..+.|.+..+..+..+++.++.|.++||.++++........
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            334444433333444444443 344445567788888899999999999999999998877665443

>PRK03612 spermidine synthase; Provisional

Probab=97.41  E-value=0.02  Score=53.97  Aligned_cols=133  Identities=16%  Similarity=0.078  Sum_probs=77.2

Q ss_pred             hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHH---HHHHHH----HhhhhH-HHHHHHHHHh
Q 016350           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI---IGASIS----ATTRNL-IGMLLGRFVV  151 (391)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---i~~~~~----~~~~~~-~~l~~~r~l~  151 (391)
                      -+|-+....  +.+.++++.|.++|+..++++.++--++.. ..-+.+..   ++..+.    ++...+ ..++..-++.
T Consensus        44 ~~G~s~~~~--~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         44 LLGDSVTQF--STVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HhCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445443333  899999999999999999988744333322 11111111   111111    111111 1223344566


Q ss_pred             hhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHH
Q 016350          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGWWRICFWVSIV  216 (391)
Q Consensus       152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~~w~~~f~~~~~  216 (391)
                      ++..|+..|....+..+.. .++-++..|-......+|+++|.++.+++. ...|..+..+.+..+
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l  185 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL  185 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            7777888777766665432 223467788888889999999998877654 455645555554433

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.36  E-value=0.0071  Score=57.31  Aligned_cols=155  Identities=17%  Similarity=0.256  Sum_probs=117.5

Q ss_pred             hcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhHHHHHHHHHHHhhhh------
Q 016350           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRN------  140 (391)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~------  140 (391)
                      ......+..+..++|.+...+  .-.++.+.-.....++.+++++|- +||-+++.++.++..++..+..++..      
T Consensus        55 g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             cchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            335667788888888876554  566777777777888999999996 78999999998888888665544321      


Q ss_pred             -------------------HHHHHHHHHHhhhccchhhHHHHHHHhhcCC---cc-c--cchHHHHHHHHHHHHHHHHHH
Q 016350          141 -------------------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP---PF-V--RGTYGAFIQIATCLGLMGSLL  195 (391)
Q Consensus       141 -------------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~-~--r~~~~~~~~~~~~~g~~~~~~  195 (391)
                                         ...+..+.-+..+|.|+.-+....+-+|-++   ++ .  +..-+.++....++|..++..
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence                               1255666778888999998898899999988   32 2  235678888999999999999


Q ss_pred             hccccccccchhHHHHHHHHHHHHHHHHHh
Q 016350          196 IGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (391)
Q Consensus       196 ~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~  225 (391)
                      +-.+..+..+ |.+-|.+..+...+.++++
T Consensus       213 ~~vyiq~~~~-w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  213 VLVYIQDNVG-WKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             HHHhhhhccc-ceeeccHHHHHHHHHHHHH
Confidence            8888888888 9999988766665554444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.017  Score=52.69  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhh---hcchhhHHHHHhhHHHHHHHHHHHhh------------------hhHHHHHHHHHHhhhccch
Q 016350           99 GGAFIGSTLSGWIA---DGVGRRRAFQLCALPMIIGASISATT------------------RNLIGMLLGRFVVGTGMGL  157 (391)
Q Consensus        99 ~~~~i~~~~~g~l~---dr~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~g~  157 (391)
                      +|..++..+.+.+.   +++||++.+.++..+..++.++.-..                  +++...++.-++.|++-+.
T Consensus       290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~  369 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC  369 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence            34444555555665   45899999999999888888876543                  2466778889999999999


Q ss_pred             hhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccc
Q 016350          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (391)
Q Consensus       158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (391)
                      .....+.++.+.+ +++|..+.++...-..++..++....+..
T Consensus       370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999 67799999998888888877766665443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.11  E-value=0.0083  Score=54.64  Aligned_cols=146  Identities=14%  Similarity=0.124  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (391)
                      +....++..+-+++.-........+.+.-|+++...  |..-+...+....+.+...++.+|+|..+.=+.+......+.
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            444455544445554445666666777779887766  888888888889999999999999999988777766554444


Q ss_pred             HHHHh---h---h----hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccc
Q 016350          133 SISAT---T---R----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (391)
Q Consensus       133 ~~~~~---~---~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (391)
                      .++..   .   +    +...++.+-++.=+|.=+.-....-++.|..|+++||...|.-....++--++-..++-.+
T Consensus       338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33322   1   2    3344444455555555555666777899999999999999999988888877777665543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.11  E-value=0.031  Score=50.99  Aligned_cols=133  Identities=15%  Similarity=0.017  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhh-------HHHHHhhHHHHHHHHHHHhh----------hhHHHHHHHHHHhhh
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRR-------RAFQLCALPMIIGASISATT----------RNLIGMLLGRFVVGT  153 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~~r~l~G~  153 (391)
                      +|..+...+.-.+.+++..++-.+.++|       .-+-.++.+++.+.++....          .+.++++..-+++++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5778888777788888888777775554       23455666666665554433          357889999999999


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc------cccchhHHHHHHHHHHHHHHHHH
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK------EIAGWWRICFWVSIVPAAILCLA  224 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~~w~~~f~~~~~~~~~~~~~  224 (391)
                      |.=+..|...++++...|++-.+..++++-.....|..++..+++.-.      +... -...|+..+...++..+.
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~-~~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFI-EGRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhh-hhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888888888877776322      1222 345566555555554333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.04  E-value=0.087  Score=45.36  Aligned_cols=73  Identities=12%  Similarity=0.115  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCC
Q 016350           98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (391)
Q Consensus        98 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  171 (391)
                      .+..+..+++.+.+..++|-|.++.++....... +..=+-+.+..++-.-...|++.+..+..--+|+++.-.
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3455567777779999999999998887765542 222344678889999999999999998777777766554

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.15  Score=45.64  Aligned_cols=168  Identities=12%  Similarity=-0.053  Sum_probs=79.5

Q ss_pred             HHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHH----HHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHH
Q 016350           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFI----GSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (391)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i----~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  136 (391)
                      +-.-..++......+++.+++--++.+   .-....+.+...+    ....-..+.-|. |+++.........+..+.+.
T Consensus        28 iG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~  103 (406)
T KOG1479|consen   28 IGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLD  103 (406)
T ss_pred             cccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            333445555666777777776544332   2334444444444    444444455552 22221111111222222222


Q ss_pred             hh---------hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchh
Q 016350          137 TT---------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (391)
Q Consensus       137 ~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (391)
                      ++         ..+...++.-++.|++.|......+...++ +|+|.-+..++=.+.+..+-+++--+.-....+...+=
T Consensus       104 ~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA  182 (406)
T KOG1479|consen  104 LALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSA  182 (406)
T ss_pred             HHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCcee
Confidence            22         245666777788888888887777666555 55554333322222222222222222222222222212


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchh
Q 016350          208 RICFWVSIVPAAILCLAMVFCAESPH  233 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~~~~~~~~e~~~  233 (391)
                      ...|.+..+..+++.+....+|..|-
T Consensus       183 ~~yF~~s~~~~llC~i~y~~l~~lpf  208 (406)
T KOG1479|consen  183 LIYFITSTVILLLCFVLYLVLPKLPF  208 (406)
T ss_pred             ehhHHHHHHHHHHHHHHHHHhhcchH
Confidence            34555566666677777776776653

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.84  E-value=0.035  Score=51.05  Aligned_cols=89  Identities=12%  Similarity=0.026  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHh----cccccccc-chhH--HHHH
Q 016350          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI----GIPVKEIA-GWWR--ICFW  212 (391)
Q Consensus       140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~----~~~l~~~~-~~w~--~~f~  212 (391)
                      .++..++.-++.|++.+........+.+ .+|++.    +..+..+.+++.+++.++    -....+.. ..++  ..|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            4667777788899998888877777666 466543    334444444444433322    11111210 1022  2334


Q ss_pred             HHHHHHHHHHHHhhccccchh
Q 016350          213 VSIVPAAILCLAMVFCAESPH  233 (391)
Q Consensus       213 ~~~~~~~~~~~~~~~~~e~~~  233 (391)
                      +..++.+++++....++..|.
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~~  200 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLPF  200 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCHH
Confidence            455555556666666666653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.80  E-value=0.0046  Score=57.00  Aligned_cols=142  Identities=13%  Similarity=0.054  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHh-h---------hhHHHHHHHHHHhhhccchhh
Q 016350           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-T---------RNLIGMLLGRFVVGTGMGLGP  159 (391)
Q Consensus        90 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-~---------~~~~~l~~~r~l~G~~~g~~~  159 (391)
                      .+.+..+..++..++........-++.-|+++..+.++.++.++.-.. .         ++.+..+.--++..+..+..+
T Consensus       257 ~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~  336 (433)
T PF03092_consen  257 YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF  336 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH
Confidence            367777777888888888888888888899988888777766554221 1         122222334556666666667


Q ss_pred             HHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch-------hHHHHHHHHHHHHHHHHHhhccccc
Q 016350          160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       160 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------w~~~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      -....+++|..|+..-|...++.....++|..++..++..+.+..+.       -.+..++..+..++.+.+..++|++
T Consensus       337 mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~  415 (433)
T PF03092_consen  337 MPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQ  415 (433)
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            67778899999999999999999999999998888888777654431       1223334444455555555667775

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.62  E-value=0.014  Score=53.21  Aligned_cols=144  Identities=14%  Similarity=0.044  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhhhhhhcccchHHHhHhh--hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-----cchhhHHHHH-hh
Q 016350           54 LVATLSSFLFGYHLGVVNEPLESISLD--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQL-CA  125 (391)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~  125 (391)
                      .++.+.+++.+...+.....+|.+.++  -+.+.++.  |.. |.-...+. .-++|.++.|     |+||||..++ ..
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~f-Sla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q   78 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AIF-SLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ   78 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHh--eee-eeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence            345566777777777666678888887  66666664  322 12111111 2344555555     8999988665 34


Q ss_pred             HHHHHHHHHHHhhh----------------------hH--HHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHH
Q 016350          126 LPMIIGASISATTR----------------------NL--IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF  181 (391)
Q Consensus       126 ~~~~i~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~  181 (391)
                      .+.++..+..+..-                      +.  ..+....++.=+-++.--.+.-.+.-.+..+++++.|..-
T Consensus        79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc  158 (544)
T PF13000_consen   79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC  158 (544)
T ss_pred             HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence            44444444333211                      01  1122222222222222222223333445567778777777


Q ss_pred             HHHHHHHHHHHHHHhccccc
Q 016350          182 IQIATCLGLMGSLLIGIPVK  201 (391)
Q Consensus       182 ~~~~~~~g~~~~~~~~~~l~  201 (391)
                      ...+.+.|..++..+--.+.
T Consensus       159 qtvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  159 QTVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HHhHhhhhHHHHHHHHHhhC
Confidence            77777777666665543333

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.58  E-value=0.012  Score=53.79  Aligned_cols=70  Identities=16%  Similarity=0.115  Sum_probs=57.4

Q ss_pred             hhHHHhHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhccC
Q 016350          306 NAIFYFSSSVFKSAGLS-SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  375 (391)
Q Consensus       306 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (391)
                      .....++...++.+..+ .|.+......+..+..+++|++.||+|.|+++.++.+...+..+++.+..+..
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~  116 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW  116 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555556666666 78899999999999999999999999999999999999999998888876533

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.29  E-value=0.0038  Score=57.06  Aligned_cols=84  Identities=24%  Similarity=0.334  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH-hhHHHHHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIG  131 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~i~  131 (391)
                      ++.+=+.++..+...+.+-|.++.+.+++|+++++.  |.+++.--+...++.|++|+++||+-+||.+++ +++.....
T Consensus        13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~--Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a   90 (618)
T KOG3762|consen   13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVV--GTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTA   90 (618)
T ss_pred             hheeeeeeeeeeecccccchHHHHHHHHcCCCHHHh--hhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            334444556666677778899999999999998888  899999999999999999999999987765555 56666666


Q ss_pred             HHHHHhh
Q 016350          132 ASISATT  138 (391)
Q Consensus       132 ~~~~~~~  138 (391)
                      .++..+.
T Consensus        91 ~fll~fv   97 (618)
T KOG3762|consen   91 TFLLVFV   97 (618)
T ss_pred             HHheeec
Confidence            6666654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.23  E-value=0.022  Score=47.31  Aligned_cols=102  Identities=7%  Similarity=0.037  Sum_probs=55.1

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccc---cc-ccchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHH
Q 016350          173 FVRGTYGAFIQIATCLGLMGSLLIGIPV---KE-IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF  248 (391)
Q Consensus       173 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  248 (391)
                      |+|+....+...+.++|.++..+.--.-   .+ ....|++++.+.+++.++-++...++ ++.-....+++++      
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if-Gk~fd~~~~~~k~------   74 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF-GKNFDIYSPKEKQ------   74 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccCccccc------
Confidence            5677777777788888876665442221   11 11239999988887776665555443 2210000000000      


Q ss_pred             HHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHH
Q 016350          249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA  298 (391)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (391)
                                       +.++....++.+..+++|+|..|...+.+....
T Consensus        75 -----------------~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   75 -----------------EKENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             -----------------ccccccccccchHHHHHccchHHHHHHHHHHHh
Confidence                             011122234467888999998887666554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.21  E-value=0.016  Score=52.17  Aligned_cols=100  Identities=14%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHhhhchhhHHHhHHH---HHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 016350          288 RVVFIGSTLFALQQLSGINAIFYFSSS---VFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  364 (391)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  364 (391)
                      +.......+....+..--+.++.-.++   .++.+....|++.....+...+.+++.|++.||++|++++.+|..+-.++
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A  111 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA  111 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence            333333444444444444444444433   44455556788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCchHhHHhhhhcc
Q 016350          365 MAIQVAASSSYIPGSASLYLSVGGML  390 (391)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~  390 (391)
                      .+...+....   +...++=++.|+|
T Consensus       112 v~~~~fs~~F---wq~~l~R~~vGiG  134 (493)
T KOG1330|consen  112 VFASGFSNHF---WQVLLCRGFVGIG  134 (493)
T ss_pred             HHHHHHHHHH---HHHHHHHHHhccc
Confidence            8888887443   3344444454543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.07  E-value=0.0016  Score=61.51  Aligned_cols=151  Identities=17%  Similarity=0.225  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHH-HhHhhhccCcchhHHHHHHHHHHH-HHHHHHHHHHHhhhcch--hhHHHHHhhH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVG--RRRAFQLCAL  126 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~  126 (391)
                      +.++...++.....+....+....| .+..+|+.+.+++  +++.++..+ +.++|.+++|++..|+.  .|..+-...+
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A--~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v  382 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQA--SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV  382 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence            3455666666666666666677777 6677899988877  566655544 66899999999999865  3454444444


Q ss_pred             HHHHHHHHHH---h--h---------h----------------------------------------hHHHHHHHHHHhh
Q 016350          127 PMIIGASISA---T--T---------R----------------------------------------NLIGMLLGRFVVG  152 (391)
Q Consensus       127 ~~~i~~~~~~---~--~---------~----------------------------------------~~~~l~~~r~l~G  152 (391)
                      ...++.+...   +  +         .                                        ++..+++..++.-
T Consensus       383 ~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~  462 (539)
T PF03137_consen  383 VSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILS  462 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHH
Confidence            4433333200   0  0         0                                        1122333333433


Q ss_pred             hccchhhHHHHHHHhhcCCccccchHHHHHHHHH-HHHHHHHHHhccccccc
Q 016350          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIAT-CLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       153 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~  203 (391)
                      +..+...+.....+-...|+++|+.++|+..... .+|.+-||++-|.+.+.
T Consensus       463 ~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  463 FFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            4444445555556667888999999999987544 44778888888877764

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.04  E-value=0.097  Score=39.20  Aligned_cols=46  Identities=22%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 016350          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (391)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (391)
                      .+.......++..++..+.+.+.|..+.+....+......++.+..
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            4556667788888999999999998887776665555544444433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.02  E-value=0.062  Score=49.47  Aligned_cols=106  Identities=12%  Similarity=0.053  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhh--HHHHH--hhHHHHHHHHHHHh---------hhhHHHHHHHHHHhhhccchh
Q 016350           92 LVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQL--CALPMIIGASISAT---------TRNLIGMLLGRFVVGTGMGLG  158 (391)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~--~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~g~~  158 (391)
                      .....|+++-.+|..+..+.. .-++|  .+++.  +=+++.-.-++|..         -++-+..++.-++.|+..|-.
T Consensus       311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~  389 (437)
T TIGR00939       311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL  389 (437)
T ss_pred             HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence            556777788788777554421 11222  33322  22223333334432         245566777899999999999


Q ss_pred             hHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcc
Q 016350          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (391)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  198 (391)
                      ......+..+..++++|..+..+...+..+|..+|..++-
T Consensus       390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888887753

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.92  E-value=0.016  Score=51.94  Aligned_cols=141  Identities=15%  Similarity=0.084  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchh-hHHHHHhhHHHHHHHHHHHhh----hhHHHHHHHHHHhhhccchhhHHHHHH
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALY  165 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~  165 (391)
                      |++.....++..+++...|.+.||... |.+.++......++.......    .+.+.++....+.|.+....+|+..-+
T Consensus       304 G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~El  383 (480)
T KOG2563|consen  304 GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFEL  383 (480)
T ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceee
Confidence            888889999999999999999999764 555555555555553222222    223455666778888888888998888


Q ss_pred             HhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc--hhHH-HHHHHHHHHHHHHHHhhccccc
Q 016350          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG--WWRI-CFWVSIVPAAILCLAMVFCAES  231 (391)
Q Consensus       166 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~w~~-~f~~~~~~~~~~~~~~~~~~e~  231 (391)
                      -.|..-|..-+.-.|+.+....+=.++-..+-+...+..+  .|.. .-+......++.+++..+++|+
T Consensus       384 gvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  384 GVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             eeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            8887666555666666654444333333333333333322  1222 2223333344444444555544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.50  E-value=0.18  Score=42.43  Aligned_cols=73  Identities=18%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             hhchhhHHHhHHHHHhhcCCChhH---HHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhccC
Q 016350          302 LSGINAIFYFSSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  375 (391)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (391)
                      .+..+.++.|.++..+..+.+...   +.....++..+| ++.|.+.|++|.+.++.++.+...++..++.......
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~   90 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR   90 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            344567788888887776666544   444456666654 8889999999999999999999999999888765543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.35  E-value=0.15  Score=44.79  Aligned_cols=51  Identities=14%  Similarity=-0.027  Sum_probs=40.2

Q ss_pred             hhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 016350          317 KSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (391)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  367 (391)
                      +....+.+.++........+...+.|.+.||+|||+.-+...++..++++.
T Consensus        65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            333334666777777777888889999999999999988888888888764

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.26  E-value=0.021  Score=55.37  Aligned_cols=62  Identities=24%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          311 FSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      .+++.++.+..+.|.+.+...++..++.++.+++.||.+||+++.++.++++++.+++++.+
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph  119 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH  119 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence            33444566667788899999999999999999999999999999999999999999988764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.14  E-value=0.033  Score=51.19  Aligned_cols=81  Identities=12%  Similarity=0.160  Sum_probs=62.2

Q ss_pred             HHHHH-HHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHH
Q 016350          143 GMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (391)
Q Consensus       143 ~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~  221 (391)
                      .++++ -++.|++.-.......++-+|...|++++.+.+.+......+..++|++........| .|+.+.+.+...++.
T Consensus       389 ~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  389 LYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLVV  467 (488)
T ss_pred             hheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHHH
Confidence            33443 4466777666677778888999999999999999999999999999999888887777 677777655555444


Q ss_pred             HHH
Q 016350          222 CLA  224 (391)
Q Consensus       222 ~~~  224 (391)
                      ...
T Consensus       468 ~~l  470 (488)
T KOG2325|consen  468 AAL  470 (488)
T ss_pred             HHH
Confidence            433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.81  E-value=0.32  Score=43.91  Aligned_cols=95  Identities=14%  Similarity=0.005  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHh--hHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHh
Q 016350           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC--ALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (391)
Q Consensus        90 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~--~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  167 (391)
                      .|.+-++..+..+++.+..|++..++.+..-+..+  .++.+...++++..+|.+..+++-++.+.......+....-++
T Consensus       287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA  366 (412)
T PF01770_consen  287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA  366 (412)
T ss_pred             chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48889999999999999999998888886554444  3444555566788899999999888888777777777777777


Q ss_pred             hcCCccccchHHHHHHH
Q 016350          168 EVSPPFVRGTYGAFIQI  184 (391)
Q Consensus       168 ~~~~~~~r~~~~~~~~~  184 (391)
                      .....+.-+...|+...
T Consensus       367 ~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  367 KNLSEERYALVFGINTF  383 (412)
T ss_pred             HhccccceeeeeeeHHH
Confidence            77777777777766554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.76  E-value=0.01  Score=51.99  Aligned_cols=108  Identities=18%  Similarity=0.202  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHh--hHHHHHHHHHH----------HhhhhHHHHHHHHHHhhhccchh
Q 016350           92 LVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLC--ALPMIIGASIS----------ATTRNLIGMLLGRFVVGTGMGLG  158 (391)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~--~~~~~i~~~~~----------~~~~~~~~l~~~r~l~G~~~g~~  158 (391)
                      .....|+++-.+|....++..=+ -.+|.+.+.+  =+++.-..++|          .+.+|-+..++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            34567888888888887763211 1344444331  22222222222          12345566777889999999999


Q ss_pred             hHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccc
Q 016350          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (391)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  199 (391)
                      ......+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888888888888776543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.61  E-value=0.19  Score=34.00  Aligned_cols=58  Identities=17%  Similarity=0.094  Sum_probs=48.7

Q ss_pred             hhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhcc
Q 016350          317 KSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  374 (391)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (391)
                      +.+..+.+++.+...++..+|.+...++.++.+++..+..+.+...+..+.+.+..+.
T Consensus        23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~   80 (85)
T PF06779_consen   23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF   80 (85)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            3444456788999999999999999999999888888899999999999888877664

Note that many members are hypothetical proteins.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.58  E-value=1.4  Score=39.63  Aligned_cols=106  Identities=16%  Similarity=0.100  Sum_probs=74.6

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHhhhcchhhHHHHHhhH-HHHHHHHHH-------HhhhhHHHHHHHHHHhhhccchhhHH
Q 016350           91 GLVVSM-CLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGASIS-------ATTRNLIGMLLGRFVVGTGMGLGPTV  161 (391)
Q Consensus        91 ~~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~-~~~i~~~~~-------~~~~~~~~l~~~r~l~G~~~g~~~~~  161 (391)
                      -++... |++.-.+|.+.+.++.+. +||+..+..+. ...+-.+..       .+-++-+++++.-.+.|+..|=....
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            355556 888888997777777665 44443333222 222222221       22456677888899999999999988


Q ss_pred             HHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhc
Q 016350          162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (391)
Q Consensus       162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  197 (391)
                      ...+..+-.+++++..+..+.......|..+|..++
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            888999999999888888888888888888777765

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.74  E-value=0.18  Score=45.66  Aligned_cols=127  Identities=16%  Similarity=-0.036  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCC
Q 016350           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (391)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  171 (391)
                      |-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+..++.+.....|-..|+-.+......+..+++...
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            44566666777999999999999998888888888788888899999999999999999886666555444443333221


Q ss_pred             -----------------------ccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHH
Q 016350          172 -----------------------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (391)
Q Consensus       172 -----------------------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~  218 (391)
                                             ..-+|...|+.+....+..++..+..|.+.+..|.=+.+-+..+..+
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s  485 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVA  485 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHH
Confidence                                   11235556666777777777666666666665553344444433333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=91.21  E-value=0.57  Score=45.62  Aligned_cols=68  Identities=10%  Similarity=0.094  Sum_probs=47.5

Q ss_pred             hhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          305 INAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      ...+..|+...++.....+......+....-+..+++|++.|+ +|+++++.++.++..++..++.+..
T Consensus         7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a   75 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA   75 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            4445556655545444444445555555556777889999996 6999999999999999998887643

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.32  E-value=2.8  Score=36.20  Aligned_cols=118  Identities=14%  Similarity=0.083  Sum_probs=80.6

Q ss_pred             HhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh-hHH-----HHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 016350           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRA-----FQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (391)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~-----l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  151 (391)
                      .+.+..+.+. ++-|....|.+|-.+.     +=+-|+=+ +..     +-.-..++.+...+..+.++++..++.-+.-
T Consensus       279 ~~g~sls~~s-qYRwyqvlYQlGVFiS-----RSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~E  352 (409)
T KOG3880|consen  279 SHGFSLSKDS-QYRWYQVLYQLGVFIS-----RSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFE  352 (409)
T ss_pred             ccCCccchhh-cchhhheeeeeeEEEE-----eccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3444444332 4468888887763221     11112211 211     2222344445555667788999888899999


Q ss_pred             hhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc
Q 016350          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (391)
Q Consensus       152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (391)
                      |+-.|..++...--+.+-.++++|-.+++....+-.+|..++.+++-.+-
T Consensus       353 GLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  353 GLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             hhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            99999999888887888788899999999999999999998888876543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=88.26  E-value=0.14  Score=44.85  Aligned_cols=19  Identities=11%  Similarity=0.260  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 016350          326 ANVFVGIANLLGSVVAMVL  344 (391)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l  344 (391)
                      .+..+.++..+|+.+.++.
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~  205 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWP  205 (309)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHhcchhccee
Confidence            5667889999999988874

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.16  E-value=12  Score=31.89  Aligned_cols=138  Identities=14%  Similarity=0.139  Sum_probs=82.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhh--HHHHHhhHHHHHHHHHH----Hhhh---hHHHHHHHHHHhhhcc
Q 016350           85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALPMIIGASIS----ATTR---NLIGMLLGRFVVGTGM  155 (391)
Q Consensus        85 ~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~----~~~~---~~~~l~~~r~l~G~~~  155 (391)
                      +.++-.|.+.+.++++..+|+-+..++..|-..|  ..+.+.....++...+.    ..++   +...-+++..+.-.+.
T Consensus       279 ~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cv  358 (454)
T KOG4332|consen  279 DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACV  358 (454)
T ss_pred             cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHH
Confidence            3344348899999999999999998888875554  34444443333332222    1222   1222244445555668


Q ss_pred             chhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHH
Q 016350          156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (391)
Q Consensus       156 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~  223 (391)
                      |..+|....+=.+..|++.|...+.++..-..+=..++... -...+....-|..|-+......+..+
T Consensus       359 GlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLyn-lh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  359 GLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN-LHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             hhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee-cccccCccccchhhhhhHHHHHHHHH
Confidence            88999999999999999999998888765544322222111 01111111147788776665555433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=87.09  E-value=7  Score=30.24  Aligned_cols=44  Identities=16%  Similarity=0.113  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 016350          326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (391)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  369 (391)
                      ...+......++.++++.+.+++|.|+.++++.+...+-.....
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~   85 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF   85 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            45556666778888999999999999999999888886655543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=82.02  E-value=29  Score=29.10  Aligned_cols=36  Identities=8%  Similarity=0.005  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 016350          331 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (391)
Q Consensus       331 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  366 (391)
                      .++..++-+-+.+++.|+..|.+.+++.+++.+..+
T Consensus       250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl  285 (294)
T KOG2881|consen  250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGL  285 (294)
T ss_pred             HHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHH
Confidence            344444444555678888888777776665555433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=80.76  E-value=7.4  Score=33.25  Aligned_cols=50  Identities=22%  Similarity=0.260  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHh
Q 016350          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (391)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (391)
                      .+.......+...++.++.|.+.||.|||+.+..+.....++.++..+..
T Consensus        41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~   90 (338)
T COG0477          41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP   90 (338)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence            46677777888888889999999999999777766655444434444433

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=80.70  E-value=21  Score=34.05  Aligned_cols=72  Identities=10%  Similarity=0.085  Sum_probs=31.0

Q ss_pred             cchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHH----HHHHHHHHHHHHHHHHHhhhC
Q 016350          277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANV----FVGIANLLGSVVAMVLMDKLG  349 (391)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~d~~~  349 (391)
                      --.|++|.|....+ ++.++-.+.+..........+...--.++...|.+..    .+.+.+.++..+++++...++
T Consensus       250 vhgDVFR~P~~~~l-ls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~  325 (521)
T PF02990_consen  250 VHGDVFRPPKHPML-LSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFG  325 (521)
T ss_pred             hhHHHhcCcCCchH-HHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence            34567777765433 3333333333333333333332222223333344333    344444555555555555454

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	391
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-28

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 167/376 (44%), Gaps = 38/376 (10%)
Query: 41  NTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISL------DLGFNGNTLAEGLVV 94
           NT  +    F   LVATL   LFGY   V++  +ES++       +L  +      G  V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61
Query: 95  SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---------TTRNLIGML 145
           +  L G  IG  L G+ ++  GRR + ++ A+   I    SA            N + + 
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121
Query: 146 LG---------RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196
           L          R + G G+GL   ++ +Y+ E++P  +RG   +F Q A   G +    +
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181
Query: 197 G--IPVKEIAGW-----WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFE 249
              I     A W     WR  F    +PA +  + +    ESP WL  +G+  +AE    
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR 241
Query: 250 KLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIF 309
           K++G +    ++ E+      D G       L++G    V+ IG  L   QQ  GIN + 
Sbjct: 242 KIMGNTLATQAVQEIK--HSLDHGRKTGGRLLMFG--VGVIVIGVMLSIFQQFVGINVVL 297
Query: 310 YFSSSVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366
           Y++  VFK+ G S+ +A    + VG+ NL  +V+A++ +DK GRK L       MA+ M 
Sbjct: 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 357
Query: 367 IQVAASSSYIPGSASL 382
               A  +  PG  +L
Sbjct: 358 SLGTAFYTQAPGIVAL 373
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 51/366 (13%), Positives = 98/366 (26%), Gaps = 20/366 (5%)

Query: 29  TTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL 88
           T+   Q+   V+      +       +     FL+     + +  L        F     
Sbjct: 4   TSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLND-ILLPQ-FQQAFTLTNF 61

Query: 89  AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGML 145
             GL+ S    G FI    +G +   +  +           +GA++   +A   N    L
Sbjct: 62  QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121

Query: 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205
           +G F++  G+G   T A  +VT + P           Q     G + +++ G  +     
Sbjct: 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181

Query: 206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS 265
             +    +  +    L         S    Y              L+    + +    L 
Sbjct: 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM------IIVAIVLLVALLIMLTKFPALQ 235

Query: 266 KLDRGDDGDIVKFEE---LLYGRHFRVVFIGSTLF-ALQQLSGINAIFYFSSSVFKSAGL 321
             +  D            L   RH+R   +    +   Q       I Y    +      
Sbjct: 236 SDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG 295

Query: 322 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS 381
            +        +   +G      L+ +     +L            I     S++  G   
Sbjct: 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI-----SAFAGGHVG 350

Query: 382 LYLSVG 387
           L     
Sbjct: 351 LIALTL 356

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 38/303 (12%), Positives = 85/303 (28%), Gaps = 33/303 (10%)

Query: 103 IGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158
               + G ++D    R        L A  M+    +   T ++  M +  F+ G   G+G
Sbjct: 77  FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136

Query: 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218
                  +        RG   +    A  +G     L+ +        W    ++    A
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196

Query: 219 AILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF 278
            ++ L               G     E + +     +          +         +  
Sbjct: 197 ILVALFAFAMMRDTPQ--SCGLPPIEEYKNDYPDDYNEKAEQELTAKQ---------IFM 245

Query: 279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS-----VFKSAGLS---SGLANVFV 330
           + +L  +    + I            +  + Y         + +    +   S  A    
Sbjct: 246 QYVLPNKLLWYIAIA--------NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297

Query: 331 GIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
             A + G+++   + DK+  G +      F ++     I    + +  P    + + V G
Sbjct: 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357

Query: 389 MLM 391
            L+
Sbjct: 358 FLI 360

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMIIGASI--------SATTRN 140
                +       G+ L GW++D V  G R A  +  + ++  A+I        + T   
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350

Query: 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG--LMGSLLIGI 198
           +  +++G  + G  M +G     L+  E++P    GT   F  +   LG  +  S ++G 
Sbjct: 351 ICMIVIGFLIYGPVMLIG-----LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405

Query: 199 PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAE 247
            V    GW        +V      LA++        + +K R  +   E
Sbjct: 406 TVDFF-GW----DGGFMVMIGGSILAVILLI--VVMIGEKRRHEQLLQE 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.9
2xut_A	524	Proton/peptide symporter family protein; transport	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.63
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.57
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.48
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.43
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.19
2xut_A	524	Proton/peptide symporter family protein; transport	98.98

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.1e-34  Score=270.56  Aligned_cols=325  Identities=28%  Similarity=0.449  Sum_probs=249.7

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCc------chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 016350           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (391)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~  119 (391)
                      .+..+...++.+++.++.+++..+++..+|.+.++++.+.      ++...|++.+++.+|..+|++++|+++||+|||+
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~   86 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            3444555666778889999999999999999999885432      2234589999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHH------------------hhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHH
Q 016350          120 AFQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF  181 (391)
Q Consensus       120 ~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~  181 (391)
                      +++++.+++.+++++++                  +++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus        87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~  166 (491)
T 4gc0_A           87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence            99999999999999998                  478999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccccccc-------chhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCC
Q 016350          182 IQIATCLGLMGSLLIGIPVKEIA-------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG  254 (391)
Q Consensus       182 ~~~~~~~g~~~~~~~~~~l~~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  254 (391)
                      .+.+..+|.++++.++..+....       .+||+.+.+..++.++..+..++.||+|+|+..+++.+++.+.+++....
T Consensus       167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence            99999999999988876554321       23899999988888888888899999999999999999988887776543


Q ss_pred             CCchhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCCh---hHHHHHHH
Q 016350          255 SHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVG  331 (391)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  331 (391)
                      +...++..+..+.....+ +.......++.   +..........+..+...+.+..|.+...+..+...   .......+
T Consensus       247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (491)
T 4gc0_A          247 TLATQAVQEIKHSLDHGR-KTGGRLLMFGV---GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG  322 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTTHHHHSCC---THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhh-hhhhHHHHhcc---cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence            322222222111111000 01111112222   233344444555556666777778777776655543   23556678


Q ss_pred             HHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhcc
Q 016350          332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  374 (391)
Q Consensus       332 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (391)
                      +...++.++++++.||+|||+.+..+...+.++++.+......
T Consensus       323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~  365 (491)
T 4gc0_A          323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT  365 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence            8889999999999999999999999888888887776654433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.1e-34  Score=266.52  Aligned_cols=295  Identities=13%  Similarity=0.116  Sum_probs=242.6

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHH
Q 016350           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (391)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  127 (391)
                      +++..+..+++..+..++......+.+|.+.+++|++.++.  |++.+++.+++.++++++|+++||+|||++++.+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            34556667777788888888899999999999999988877  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccc-cc
Q 016350          128 MIIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EI  203 (391)
Q Consensus       128 ~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~  203 (391)
                      .+++.+++   +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999   888999999999999999999999999999999999999999999999999999999999999988 65


Q ss_pred             cch------------------------hHHHHHHHHHHHHHHHHHhhc--cccchhHHHHcCCHHHHHHHHHHHhCCCCc
Q 016350          204 AGW------------------------WRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHV  257 (391)
Q Consensus       204 ~~~------------------------w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (391)
                      .+.                        ||+.|++.+...++..+..++  .||+++.    .++                
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~----------------  240 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHS----------------  240 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----CCC----------------
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----ccc----------------
Confidence            554                        899998776666655444433  3444321    000                


Q ss_pred             hhHHHHhhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHh-HHHHHhhcCCChhHHHHHHHHHHHH
Q 016350          258 KSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF-SSSVFKSAGLSSGLANVFVGIANLL  336 (391)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  336 (391)
                                ++++.....++++++++|.++...+..++..........+.+.| ..+.++.+....+.......++..+
T Consensus       241 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  310 (438)
T 3o7q_A          241 ----------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI  310 (438)
T ss_dssp             ----------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence                      01112223456678888999988888777777776666777777 6665566555677888888999999


Q ss_pred             HHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHhcc
Q 016350          337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  374 (391)
Q Consensus       337 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (391)
                      +.++.+++.||++||+.+.++..+..++++++.+.++.
T Consensus       311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T 3o7q_A          311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH  348 (438)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999888888887777665443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=4.8e-34  Score=263.25  Aligned_cols=309  Identities=13%  Similarity=0.050  Sum_probs=236.5

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +.+++.+..++++.+...++.....+.+|.+.+++ .+.++.  |++.+++.++..++++++|+++||+|||++++.+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            34566777888888999999999999999999999 888877  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh----hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350          127 PMIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       127 ~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      +.+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    99999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             ccchhHHHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhc
Q 016350          203 IAGWWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (391)
Q Consensus       203 ~~~~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (391)
                      ..+.||+.|++.++..++..+ ..+++||+|+....+++++...           ..+. +...+.+++........+++
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~  248 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-----------DYPD-DYNEKAEQELTAKQIFMQYV  248 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-----------C--------------CCTHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-----------cccc-cchhhhhcccccccchHHHH
Confidence            554389999998877766544 4466788765321111110000           0000 00000000111111124667


Q ss_pred             ccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhh--CchHHHHHHHH
Q 016350          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFF  359 (391)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~  359 (391)
                      +++|.++...+..++..+.......+.+.|+.+.++.+....+.......++.+++.++.+++.||+  +||+.+.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~  328 (451)
T 1pw4_A          249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM  328 (451)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            8888888887777777766666555666666544444444467788888999999999999999999  99988887776


Q ss_pred             HHH-HHHHHHHH
Q 016350          360 SMA-VSMAIQVA  370 (391)
Q Consensus       360 ~~~-~~~~~~~~  370 (391)
                      +.. ++++++.+
T Consensus       329 ~~~~~~~~~~~~  340 (451)
T 1pw4_A          329 TLVTIATIVYWM  340 (451)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHH
Confidence            665 55554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=4.6e-31  Score=237.41  Aligned_cols=261  Identities=14%  Similarity=0.133  Sum_probs=224.6

Q ss_pred             HHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHH
Q 016350           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (391)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (391)
                      .++++..+...+......+.+|.+.+++|.+.++.  +++.+++.++..+++++.|+++||+|||+++..+..+.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            45666778888888889999999999999988877  8999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHH
Q 016350          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (391)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~  213 (391)
                      +.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~  159 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998877 9999998


Q ss_pred             HHHHHHHHHH-HhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhHHHH
Q 016350          214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (391)
Q Consensus       214 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (391)
                      .++..++..+ ..+++||+++..   +                              ++++...++++++++|.++...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~---~------------------------------~~~~~~~~~~~~~~~~~~~~~~~  206 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRPVD---A------------------------------PRTRLLTSYKTLFGNSGFNCYLL  206 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCSTTT---C------------------------------CCCCTTTCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcccCCCC---c------------------------------ccccHHHHHHHHhcCcchHHHHH
Confidence            8887777665 445677764310   0                              00112334667788888888888


Q ss_pred             HHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCc
Q 016350          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR  350 (391)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  350 (391)
                      ..++..........+.+.|..+.++.+....+.......++.+++.++.+++.||.++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777767778888888777777777888888899999999999999999887

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=9.3e-28  Score=223.67  Aligned_cols=314  Identities=14%  Similarity=0.106  Sum_probs=208.3

Q ss_pred             HHHHHHHHhhhhhhcccchHH-HhHhh-----hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHhhHH
Q 016350           55 VATLSSFLFGYHLGVVNEPLE-SISLD-----LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALP  127 (391)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~-~i~~~-----~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~  127 (391)
                      .+.+..+...+......+.++ .+.++     +|.+.++.  +++.+++.++..++++++|+++|| +|||+++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~   94 (491)
T 4aps_A           17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL   94 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            334444444444433333333 44444     89887776  899999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccc--cchHHHHHHHHHHHHHHHHHHhccccccccc
Q 016350          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (391)
Q Consensus       128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (391)
                      .+++.+++++++|++.++++|+++|++.+...+...++++|++|+++  |++++++++.+..+|..++|.+++.+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A           95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999988  7778888999999999999999999998888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcc-ccch----hHHHHcCCHHHHHHHHHH----------------HhCCCCchhHHHH-
Q 016350          206 WWRICFWVSIVPAAILCLAMVFC-AESP----HWLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAE-  263 (391)
Q Consensus       206 ~w~~~f~~~~~~~~~~~~~~~~~-~e~~----~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~-  263 (391)
                       ||+.|++.++..++..+..++. ++..    +....+.+.++.++..+.                ..+.......... 
T Consensus       175 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  253 (491)
T 4aps_A          175 -YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL  253 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh
Confidence             9999999877666655544332 2211    000011122222222221                0111100000000 


Q ss_pred             --------hhhcccCCCCccccchhcccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHH
Q 016350          264 --------LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANL  335 (391)
Q Consensus       264 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (391)
                              ........+.......+..+........+...+...........++.|.++..+.+....+.......++..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (491)
T 4aps_A          254 TIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIM  333 (491)
T ss_dssp             HHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHH
Confidence                    000000000000001111112223444445555555555556677777777666665667888888889999


Q ss_pred             HHHHHHHHHHhhhCchHHHH-----HHHHHHHHHHHHHHHH
Q 016350          336 LGSVVAMVLMDKLGRKALLQ-----WSFFSMAVSMAIQVAA  371 (391)
Q Consensus       336 ~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~~~~~~~  371 (391)
                      ++.++.+++.||++||+...     .+..+.+++++++...
T Consensus       334 ~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  374 (491)
T 4aps_A          334 LYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIP  374 (491)
T ss_dssp             HHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHH
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999886544     6777777776666654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.90  E-value=3.8e-25  Score=201.44  Aligned_cols=285  Identities=15%  Similarity=0.074  Sum_probs=180.0

Q ss_pred             HHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHH---
Q 016350           57 TLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA---  132 (391)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~---  132 (391)
                      ....+..........+.+|. +.+++|.+..+.  |++.+++.++..++++++|+++||+|||++++.+..+.+++.   
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~   90 (417)
T 2cfq_A           13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF   90 (417)
T ss_dssp             HHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            33334444445555677776 455689988877  999999999999999999999999999999998887765532   


Q ss_pred             HHHHhhhhHH-HHHHHHHHhhhccchhhHHHHHHHhhcCCc--cccchHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350          133 SISATTRNLI-GMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (391)
Q Consensus       133 ~~~~~~~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  209 (391)
                      ...++++... .+...+++.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++.+.+. + ||+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~  168 (417)
T 2cfq_A           91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQF  168 (417)
T ss_dssp             HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhH
Confidence            2223333221 234567777776666554444444444433  4567777777777888999999999888763 5 899


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhcccccchhH
Q 016350          210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV  289 (391)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (391)
                      .|++.++..++..+..++.+|+++.   +.+.++          .           +.+++++....++++++++|.++.
T Consensus       169 ~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------~-----------~~~~~~~~~~~~~~~~~~~~~~~~  224 (417)
T 2cfq_A          169 VFWLGSGCALILAVLLFFAKTDAPS---SATVAN----------A-----------VGANHSAFSLKLALELFRQPKLWF  224 (417)
T ss_dssp             HHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS----------S-----------SSSCCCCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCccccc---cccccc----------c-----------cccccccccHHHHHHHhcCCchhh
Confidence            9988776655555555554443310   000000          0           000001111223456777888776


Q ss_pred             HHHHHHHHHHHhhhchhhHHHhHHHHHhh---cCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 016350          290 VFIGSTLFALQQLSGINAIFYFSSSVFKS---AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (391)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  366 (391)
                      ..+..+...........+.+.|.++.++.   .....+.......++.+++.++.++++||++||+++..+..+.+++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~  304 (417)
T 2cfq_A          225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII  304 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence            65544443333333334456666543321   122235566677778889999999999999999998888777777655


Q ss_pred             HHH
Q 016350          367 IQV  369 (391)
Q Consensus       367 ~~~  369 (391)
                      ++.
T Consensus       305 ~~~  307 (417)
T 2cfq_A          305 GSS  307 (417)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.89  E-value=9.6e-23  Score=191.34  Aligned_cols=166  Identities=16%  Similarity=0.145  Sum_probs=141.7

Q ss_pred             HHHHhhhhhhcccchHH-HhHhhhc------cCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhHHHHHhhHHHHH
Q 016350           59 SSFLFGYHLGVVNEPLE-SISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMII  130 (391)
Q Consensus        59 ~~~~~~~~~~~~~~~~~-~i~~~~~------~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i  130 (391)
                      ..+...+......+.++ .+.+++|      .+..+.  +++.+++.++..++.+++|+++||+ |||+++..+.++.++
T Consensus        20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~   97 (524)
T 2xut_A           20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV   97 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            33444444433344444 4667888      887777  8999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhh-hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHH---HHHHHHHHHHHHHHhccccccccch
Q 016350          131 GASISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       131 ~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      +.+++++++ +++.++++|+++|++.+...+...+++.|++|+++|+++.+.   .+.+..+|..++|.+++.+.+..+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  176 (524)
T 2xut_A           98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-  176 (524)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence            999999999 999999999999999999999999999999999999877666   889999999999999999988778 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhc
Q 016350          207 WRICFWVSIVPAAILCLAMVF  227 (391)
Q Consensus       207 w~~~f~~~~~~~~~~~~~~~~  227 (391)
                      ||+.|++.++..++..+..++
T Consensus       177 ~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          177 AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999887776665555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.63  E-value=4.6e-15  Score=136.23  Aligned_cols=174  Identities=16%  Similarity=0.161  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHhhhhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhhHHHHHhhHHH
Q 016350           52 HVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPM  128 (391)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~  128 (391)
                      .+....+..+.............|.+.++ +|.+..+.  +++.+.+.++..++.++.|++.||+  |||+.+..+..+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            34444455555555555566677877776 88877766  8999999999999999999999999  9999988887776


Q ss_pred             H-HHHHHHHhh--hhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHH-HHHHHHHhcccccccc
Q 016350          129 I-IGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIA  204 (391)
Q Consensus       129 ~-i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~  204 (391)
                      . ++.++..+.  .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  410 (451)
T 1pw4_A          331 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  410 (451)
T ss_dssp             HHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6 666666665  36778888889999999999888899999999999999999999999999 9999999999999888


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhcc
Q 016350          205 GWWRICFWVSIVPAAILCLAMVFC  228 (391)
Q Consensus       205 ~~w~~~f~~~~~~~~~~~~~~~~~  228 (391)
                      + |+..|++.++..++..+..+++
T Consensus       411 g-~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          411 G-WDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             C-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-cHHHHHHHHHHHHHHHHHHHHH
Confidence            8 8999998887777766655443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.57  E-value=1.1e-14  Score=135.21  Aligned_cols=174  Identities=20%  Similarity=0.137  Sum_probs=119.7

Q ss_pred             HHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhh
Q 016350           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (391)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  139 (391)
                      .+........+....|.+.++.+.+....  ........+...++.++.+++.||+|||+.++.+....+++.+..+...
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~  363 (491)
T 4gc0_A          286 IFQQFVGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF  363 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence            33333344444556677888877665544  4556667788889999999999999999999999888888777655431


Q ss_pred             -----hHHHHH-HHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccccc------chh
Q 016350          140 -----NLIGML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------GWW  207 (391)
Q Consensus       140 -----~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~w  207 (391)
                           +...++ +.-+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+..      + +
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~  441 (491)
T 4gc0_A          364 YTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-N  441 (491)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-T
T ss_pred             hcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h
Confidence                 222222 22222333322 34567789999999999999999999999999988887776654422      2 4


Q ss_pred             HHHHHHHHHHHHHHHH-HhhccccchhHHHHcCCHHH
Q 016350          208 RICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAE  243 (391)
Q Consensus       208 ~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~  243 (391)
                      .+.|++.++++++..+ .++++||+      ++++.|
T Consensus       442 ~~~~~i~~~~~~~~~i~~~~~~PET------kg~tLe  472 (491)
T 4gc0_A          442 GFSYWIYGCMGVLAALFMWKFVPET------KGKTLE  472 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCC------TTCCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHheecCC------CCCCHH
Confidence            4567776666666554 45779999      666554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.50  E-value=6.5e-14  Score=127.25  Aligned_cols=140  Identities=13%  Similarity=-0.002  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcC
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  170 (391)
                      ++..++..++..++.++.|+++||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+....++.|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67777888888899999999999999999999999888888888888888888888888888887777777788999999


Q ss_pred             CccccchHHHH-HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh-hccccc
Q 016350          171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAES  231 (391)
Q Consensus       171 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~e~  231 (391)
                      |++.|+++.+. ++....+|..++|.+++.+.+..+ ++..|.+.++..++..+.. .+.+|+
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999998 478888999999999999888777 7888888777777665554 445554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.48  E-value=1.1e-13  Score=126.61  Aligned_cols=162  Identities=14%  Similarity=0.037  Sum_probs=126.1

Q ss_pred             HHHHHhhhhhhcccchHHHh-Hhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHH
Q 016350           58 LSSFLFGYHLGVVNEPLESI-SLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (391)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i-~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (391)
                      +..+.............|.+ .++ +|.+..+.  ++..+.+.++..++.++.|+++||+|||+++..+.++.+++.++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  342 (438)
T 3o7q_A          265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS  342 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            33333333344444556655 555 48877766  899999999999999999999999999999999999999999888


Q ss_pred             HhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHH
Q 016350          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (391)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~  215 (391)
                      .+.++...++.. ++.|++.+...+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+.++..|++.+
T Consensus       343 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  419 (438)
T 3o7q_A          343 AFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA  419 (438)
T ss_dssp             HHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred             HHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            888887665544 8889999999999999999999866 888888877 5568999999999999887664677777655


Q ss_pred             HHHHHHHHH
Q 016350          216 VPAAILCLA  224 (391)
Q Consensus       216 ~~~~~~~~~  224 (391)
                      +..++..+.
T Consensus       420 ~~~~~~~~~  428 (438)
T 3o7q_A          420 LCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            544444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.43  E-value=1e-12  Score=122.04  Aligned_cols=159  Identities=9%  Similarity=-0.006  Sum_probs=119.5

Q ss_pred             hhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH-----HhhHHHHHHHHHHHhh
Q 016350           65 YHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-----LCALPMIIGASISATT  138 (391)
Q Consensus        65 ~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~~  138 (391)
                      .........+|.+.++ ++.+..+.  ++..+...++..++.++.|++.||+|||+...     .+.++.+++.++.++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  374 (491)
T 4aps_A          297 AIEEQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIP  374 (491)
T ss_dssp             HHHGGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHH
T ss_pred             HHHhhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            3333344555555444 56554444  67788888888999999999999999987655     6777777776666654


Q ss_pred             h---------hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccchhHH
Q 016350          139 R---------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (391)
Q Consensus       139 ~---------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  209 (391)
                      .         +.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..  +.+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~  452 (491)
T 4aps_A          375 GALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVA  452 (491)
T ss_dssp             HHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTH
T ss_pred             HHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH
Confidence            3         66778888899999999988999999999999999999999999999999999999999887654  456


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 016350          210 CFWVSIVPAAILCLAMVF  227 (391)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~  227 (391)
                      .|.+.+...++..+..++
T Consensus       453 ~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          453 YFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            676666666555444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.19  E-value=4.5e-12  Score=113.37  Aligned_cols=156  Identities=15%  Similarity=0.091  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHhHhh-hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHH-HHH
Q 016350           53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MII  130 (391)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~i  130 (391)
                      +....+..+.............|.+.++ +|.+..+.  +++.+...++..++.++.+++.||+|+|..  .+..+ ...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~  276 (375)
T 2gfp_A          201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLA  276 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            3344444444444444455566665555 78876665  899999999999999999999999998432  22222 222


Q ss_pred             HHH--HHHh--hhhHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccch
Q 016350          131 GAS--ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (391)
Q Consensus       131 ~~~--~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (391)
                      +..  ....  .++.+.+++.-++.|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+ 
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-  354 (375)
T 2gfp_A          277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-  354 (375)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-
T ss_pred             HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence            221  2222  2467777788899999999999999999999998 889999999999999999999999988877655 


Q ss_pred             hHHHHHHH
Q 016350          207 WRICFWVS  214 (391)
Q Consensus       207 w~~~f~~~  214 (391)
                      |+..+.+.
T Consensus       355 ~~~~~~~~  362 (375)
T 2gfp_A          355 GSLGLLMT  362 (375)
T ss_dssp             HHHHHHHH
T ss_pred             ccHHHHHH
Confidence            77776654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.98  E-value=1.6e-09  Score=101.32  Aligned_cols=136  Identities=12%  Similarity=0.091  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh----hcchh----hHHHHHhhHHHHHHHHHHHhh---------hhHHHHHHHHHHhhh
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIA----DGVGR----RRAFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGT  153 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~  153 (391)
                      +++.+...++..++.++.+++.    ||.|+    ++.+..+.++.+++.++.++.         .+.+.+++..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            5666666677777777776654    55543    356777888888887777664         366778888999999


Q ss_pred             ccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhccccccccc-hh---------HHHHHHHHHHHHHHHH
Q 016350          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WW---------RICFWVSIVPAAILCL  223 (391)
Q Consensus       154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w---------~~~f~~~~~~~~~~~~  223 (391)
                      +.+...+....++.|..|+++|++++|+.+....+|..+++.+.+.+.+..+ .|         +..|++.+...++..+
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI  497 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998876421 13         3336665555555544


Q ss_pred             Hhh
Q 016350          224 AMV  226 (391)
Q Consensus       224 ~~~  226 (391)
                      ..+
T Consensus       498 ~~~  500 (524)
T 2xut_A          498 VFA  500 (524)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-09
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	8e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 43/354 (12%), Positives = 101/354 (28%), Gaps = 17/354 (4%)

Query: 40  ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG 99
              +P+++     + +     +   Y +           ++ GF+   L  G  +S    
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISI 70

Query: 100 GAFIGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155
                  + G ++D    R        L A  M+    +   T ++  M +  F+ G   
Sbjct: 71  AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 130

Query: 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215
           G+G       +        RG   +    A  +G     L+ +        W    ++  
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
             A ++ L                   E + ++         +   A+            
Sbjct: 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ----------- 239

Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANL 335
           +  + +L  +    + I +    L +   ++    +   V   A   S  A      A +
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299

Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389
            G+++   + DK+ R        F M +     +    +         + +  +
Sbjct: 300 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 5/201 (2%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
            +  +  L  F + + +G    P   I L    + +    G++ +     + +   L G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 111 IADGVGRRRAFQLCALPMIIGASISA----TTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166
           ++D +G R+        M++  +              +L+G  V G  +G      A  V
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125

Query: 167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226
                   R +   F +      +  +L   I         +  FW+    A IL + + 
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185

Query: 227 FCAESPHWLYKKGRTAEAEAE 247
           F                A   
Sbjct: 186 FAKTDAPSSATVANAVGANHS 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.63
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.47

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-33  Score=254.51  Aligned_cols=299  Identities=13%  Similarity=0.028  Sum_probs=221.7

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhcccchHHHhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhH
Q 016350           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (391)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  126 (391)
                      +.+|..+..++++.+...++...++...|.+. |+|++.++.  |++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            34566777777788888888888888888775 589998887  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh----hHHHHHHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHhcccccc
Q 016350          127 PMIIGASISATTR----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (391)
Q Consensus       127 ~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (391)
                      +.+++.+++++++    +++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999999988764    677899999999999999999999999999999999999999999999999999998887766


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHh-hccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhc
Q 016350          203 IAGWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (391)
Q Consensus       203 ~~~~w~~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (391)
                      ..++||+.|++.++..++..+.. ++.+|+|+.......++...+.            ......+.+++........+..
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  245 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY------------PDDYNEKAEQELTAKQIFMQYV  245 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------------CCTHHHHHHT
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhc------------ccchhhccccccchhhHHHHHH
Confidence            55459999998877777665554 4455555322111111100000            0000001111222233345667


Q ss_pred             ccccchhHHHHHHHHHHHHhhhchhhHHHhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 016350          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (391)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (391)
                      ++++.++......++..........+.+.|+.+..+.+....+.......++.+++.++.|++.||++|++........
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  324 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  324 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchh
Confidence            7788888777777766666666555666666554444444566788888999999999999999999987654443333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.5e-22  Score=178.07  Aligned_cols=296  Identities=14%  Similarity=0.030  Sum_probs=187.2

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchHHH-hHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHH
Q 016350           51 PHVLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (391)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (391)
                      +....+.+..+...+......+.+|. +.+++|+|.++.  |++.+++.++..++++++|+++||+|||++++.+..+..
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            33445556666677777777888886 567789988877  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHH----HHHHHHhhhccchhhHHHHHHHhhcCCc--cccchHHHHHHHHHHHHHHHHHHhccccccc
Q 016350          130 IGASISATTRNLIGM----LLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (391)
Q Consensus       130 i~~~~~~~~~~~~~l----~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (391)
                      ++..+..+..+....    ++.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  164 (417)
T d1pv7a_          85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI  164 (417)
T ss_dssp             HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence            998888887665543    4455666655555544444444333332  3455667777888888999999999888776


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhccccchhHHHHcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccccchhccc
Q 016350          204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY  283 (391)
Q Consensus       204 ~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (391)
                      .+ |+..+.......+...+..+..+|+++.    .+.++..+                     +..+........+..+
T Consensus       165 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~~~~~  218 (417)
T d1pv7a_         165 NN-QFVFWLGSGCALILAVLLFFAKTDAPSS----ATVANAVG---------------------ANHSAFSLKLALELFR  218 (417)
T ss_dssp             CH-HHHHHHHHHHHHHHHHHHHSSCCCSCSS----SCSSHHHH---------------------SCCCCCCHHHHHHHTT
T ss_pred             cc-cccccchhhHHHHHHHHHHHHhcccccc----hhhhhhhh---------------------hhcccccccccccccc
Confidence            53 4444444445455555555666666431    11111000                     1111111222223333


Q ss_pred             ccchhHHHHHHHHHHHHhhhchhhHHHhHHHHH---hhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH
Q 016350          284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF---KSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (391)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (391)
                      ++..+......................+.....   +......+.......++..++..+.+++.||.++|+.+.++..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~  298 (417)
T d1pv7a_         219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI  298 (417)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHH
T ss_pred             cccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHH
Confidence            344444333333333222222222222211111   11111234466677788889999999999999999999999998


Q ss_pred             HHHHHHHHHHHhcc
Q 016350          361 MAVSMAIQVAASSS  374 (391)
Q Consensus       361 ~~~~~~~~~~~~~~  374 (391)
                      .+++.+.+.+.++.
T Consensus       299 ~~~~~~~~~~~~~~  312 (417)
T d1pv7a_         299 MSVRIIGSSFATSA  312 (417)
T ss_dssp             HHHHHHHHHTCCCH
T ss_pred             HHHhhhcccccccc
Confidence            88888877765543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=7.2e-16  Score=137.11  Aligned_cols=136  Identities=15%  Similarity=0.025  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhccchhhHHHHHHHhhcC
Q 016350           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (391)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  170 (391)
                      +...+...++..++..+.+++.||+|+|+++..+.++.+++.+...+.++.+.+++..++.|++.+...+....++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67777888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccchHHHHH-HHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhc
Q 016350          171 PPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (391)
Q Consensus       171 ~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~  227 (391)
                      |+++|+++.++. +....+|..++|.++|.+.+..| |+..|++.+++.++..+...+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999975 56778999999999999999888 899999887777766555544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=7.5e-14  Score=125.61  Aligned_cols=154  Identities=17%  Similarity=0.124  Sum_probs=115.9

Q ss_pred             cchHH-HhHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhHHHHHHHH---HHH--hhhhHHHH
Q 016350           71 NEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISA--TTRNLIGM  144 (391)
Q Consensus        71 ~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~---~~~--~~~~~~~l  144 (391)
                      ....| .+.+.++.+..+.  ++..+.+.++..++.++.|++.||++||+..........+..+   ...  ...+.+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (447)
T d1pw4a_         269 LDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD  346 (447)
T ss_dssp             HHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred             hhhhhhhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH
Confidence            33444 4555677776666  8899999999999999999999999987544433333222222   222  23567777


Q ss_pred             HHHHHHhhhccchhhHHHHHHHhhcCCccccchHHHHHHHHHHH-HHHHHHHhccccccccchhHHHHHHHHHHHHHHHH
Q 016350          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (391)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~f~~~~~~~~~~~~  223 (391)
                      .++-++.|++.+...+....+..|.+|++.|+++.|+.+....+ |.+++|.+.+.+.+..| |+..|++.+...++..+
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~  425 (447)
T d1pw4a_         347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVI  425 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence            88888899998888888999999999999999999999877666 67788999999999888 89988887666666555


Q ss_pred             Hhhc
Q 016350          224 AMVF  227 (391)
Q Consensus       224 ~~~~  227 (391)
                      +..+
T Consensus       426 ~~~~  429 (447)
T d1pw4a_         426 LLIV  429 (447)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433