Citrus Sinensis ID: 016353
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | 2.2.26 [Sep-21-2011] | |||||||
| P09394 | 358 | Glycerophosphoryl diester | N/A | no | 0.728 | 0.796 | 0.309 | 1e-31 | |
| Q06282 | 364 | Glycerophosphoryl diester | yes | no | 0.803 | 0.862 | 0.285 | 2e-25 | |
| Q9FJ62 | 766 | Probable glycerophosphory | no | no | 0.764 | 0.390 | 0.226 | 3e-19 | |
| O30405 | 356 | Glycerophosphoryl diester | yes | no | 0.762 | 0.837 | 0.246 | 7e-19 | |
| Q9SZ11 | 759 | Probable glycerophosphory | no | no | 0.734 | 0.378 | 0.226 | 1e-17 | |
| Q7Y208 | 763 | Probable glycerophosphory | no | no | 0.749 | 0.384 | 0.221 | 4e-16 | |
| P37965 | 293 | Glycerophosphoryl diester | yes | no | 0.652 | 0.870 | 0.267 | 3e-15 | |
| P96236 | 274 | Probable glycerophosphory | yes | no | 0.519 | 0.740 | 0.265 | 7e-15 | |
| P54527 | 243 | Uncharacterized protein Y | no | no | 0.319 | 0.514 | 0.302 | 6e-09 | |
| O07592 | 243 | Putative glycerophosphory | no | no | 0.202 | 0.325 | 0.37 | 1e-07 |
| >sp|P09394|GLPQ_ECOLI Glycerophosphoryl diester phosphodiesterase OS=Escherichia coli (strain K12) GN=glpQ PE=1 SV=2 | Back alignment and function desciption |
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Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 163/339 (48%), Gaps = 54/339 (15%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
+AHRG++G PE T A A +GAD++E D++ +KD L+ HD +LD T++AD
Sbjct: 34 IAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADR-- 91
Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----QQYNGKFP------- 155
F DR R ++ +DFTL+E+K+L+ + + + Q Y G+FP
Sbjct: 92 FPDRAR-------KDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFR 144
Query: 156 IITFEEYI----SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
+ TFEE I + + +GIYPE+K P F +Q +GK K ++ LKKYGY
Sbjct: 145 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYT 199
Query: 212 GAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILT-EDTNQSYSEITSDA 270
G +++Q F L I N+ + ++ V ++ D N++ + +
Sbjct: 200 GK-------DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGS 252
Query: 271 YLNY-------------IKEYCVGIGPWKDTVVPVANNYSQTP-TDLVARAHALDLQVHP 316
++NY + EY GIGP ++ + T +V A L VHP
Sbjct: 253 WVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHP 312
Query: 317 YTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355
YT R++ + D + YD NK GV+GLFTDFP
Sbjct: 313 YTVRSDKL---PEYTPDVNQLYDALYNKAGVNGLFTDFP 348
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Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols. Escherichia coli (strain K12) (taxid: 83333) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6 |
| >sp|Q06282|GLPQ_HAEIN Glycerophosphoryl diester phosphodiesterase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glpQ PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FJ62|GLPQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1 | Back alignment and function description |
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| >sp|O30405|GLPQ_TREPA Glycerophosphoryl diester phosphodiesterase OS=Treponema pallidum (strain Nichols) GN=glpQ PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9SZ11|GLPQ2_ARATH Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q7Y208|GLPQ3_ARATH Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2 | Back alignment and function description |
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| >sp|P37965|GLPQ_BACSU Glycerophosphoryl diester phosphodiesterase OS=Bacillus subtilis (strain 168) GN=glpQ PE=3 SV=1 | Back alignment and function description |
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| >sp|P96236|GLPQ1_MYCTU Probable glycerophosphoryl diester phosphodiesterase 1 OS=Mycobacterium tuberculosis GN=glpQ1 PE=2 SV=3 | Back alignment and function description |
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| >sp|P54527|YQIK_BACSU Uncharacterized protein YqiK OS=Bacillus subtilis (strain 168) GN=yqiK PE=4 SV=2 | Back alignment and function description |
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| >sp|O07592|YHDW_BACSU Putative glycerophosphoryl diester phosphodiesterase YhdW OS=Bacillus subtilis (strain 168) GN=yhdW PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | ||||||
| 224130036 | 399 | predicted protein [Populus trichocarpa] | 0.984 | 0.964 | 0.792 | 0.0 | |
| 255547185 | 446 | glycerophosphoryl diester phosphodiester | 0.976 | 0.856 | 0.790 | 0.0 | |
| 408689044 | 399 | phospholipase C3 [Populus tomentosa] | 0.984 | 0.964 | 0.787 | 0.0 | |
| 118486622 | 399 | unknown [Populus trichocarpa] | 0.984 | 0.964 | 0.790 | 0.0 | |
| 225457190 | 395 | PREDICTED: glycerophosphoryl diester pho | 0.982 | 0.972 | 0.784 | 1e-178 | |
| 15241502 | 372 | glycerophosphoryl diester phosphodiester | 0.905 | 0.951 | 0.816 | 1e-172 | |
| 297810905 | 372 | predicted protein [Arabidopsis lyrata su | 0.902 | 0.948 | 0.811 | 1e-170 | |
| 359807255 | 392 | uncharacterized protein LOC100778145 pre | 0.982 | 0.979 | 0.75 | 1e-169 | |
| 157890956 | 372 | glycerophosphodiester phosphodiesterase | 0.930 | 0.978 | 0.8 | 1e-169 | |
| 300637793 | 396 | glycerophosphodiester phosphodiesterase | 0.982 | 0.969 | 0.740 | 1e-167 |
| >gi|224130036|ref|XP_002328638.1| predicted protein [Populus trichocarpa] gi|222838814|gb|EEE77165.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/396 (79%), Positives = 346/396 (87%), Gaps = 11/396 (2%)
Query: 3 ISSTC------FIPLLFLSLIAGCAARPLYPLPSKLD-IHKQPLQTSRPYNLAHRGSNGE 55
+SSTC F P+LFLSL+ CAARP+YPLPSK+ ++ PLQTSRPYN+AHRGSNGE
Sbjct: 1 MSSTCSGFGFGFAPILFLSLVVACAARPIYPLPSKVSHGNRLPLQTSRPYNIAHRGSNGE 60
Query: 56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCM 115
PEET+AAYMRAIEEGADFIETDIL+SKDGVLIC HDV LDDTT+IADHKEFA+RKRT
Sbjct: 61 IPEETSAAYMRAIEEGADFIETDILSSKDGVLICFHDVTLDDTTDIADHKEFANRKRTYD 120
Query: 116 VQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGI 175
VQGVNTTGFF VDFTL ELK LR KQRYSFRDQQYNG FPIITFEE+ISIALDA RVVGI
Sbjct: 121 VQGVNTTGFFTVDFTLTELKLLRVKQRYSFRDQQYNGMFPIITFEEFISIALDAPRVVGI 180
Query: 176 YPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLV 235
YPE+KNP+ INQHVKW DGKKFEDKFV LKKYGY+G+YMS+ WLKQP+FIQSFAPTSLV
Sbjct: 181 YPEIKNPILINQHVKWPDGKKFEDKFVGILKKYGYRGSYMSENWLKQPLFIQSFAPTSLV 240
Query: 236 YISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANN 295
YISN TDSPKIFLIDDV I T+DTNQSY EITSDAYL+YIK+Y VGIGPWKDT+VPV N
Sbjct: 241 YISNLTDSPKIFLIDDVTIPTQDTNQSYWEITSDAYLDYIKDYVVGIGPWKDTIVPVGKN 300
Query: 296 YSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFP 355
Y Q P++LVARAHA DLQVHPYTYRNE++FLHF+F QDPY EYDYW+N I VDGLFTDF
Sbjct: 301 YLQIPSNLVARAHAHDLQVHPYTYRNENKFLHFDFHQDPYEEYDYWLNNIRVDGLFTDFT 360
Query: 356 GSLHNYQELTSPVSK----DNRASKLLHKIAVLISS 387
GSLHN+QE TSP+SK DN ASKLLHKIA+LISS
Sbjct: 361 GSLHNFQEWTSPLSKDGGDDNSASKLLHKIALLISS 396
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547185|ref|XP_002514650.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] gi|223546254|gb|EEF47756.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|408689044|gb|AFU81122.1| phospholipase C3 [Populus tomentosa] | Back alignment and taxonomy information |
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| >gi|118486622|gb|ABK95148.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225457190|ref|XP_002283945.1| PREDICTED: glycerophosphoryl diester phosphodiesterase [Vitis vinifera] gi|297733861|emb|CBI15108.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|15241502|ref|NP_196420.1| glycerophosphoryl diester phosphodiesterase [Arabidopsis thaliana] gi|6562317|emb|CAB62615.1| glycerophosphodiester phosphodiesterase-like protein [Arabidopsis thaliana] gi|66792678|gb|AAY56441.1| At5g08030 [Arabidopsis thaliana] gi|332003853|gb|AED91236.1| glycerophosphoryl diester phosphodiesterase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297810905|ref|XP_002873336.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319173|gb|EFH49595.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|359807255|ref|NP_001241112.1| uncharacterized protein LOC100778145 precursor [Glycine max] gi|304421390|gb|ADM32494.1| phytase [Glycine max] | Back alignment and taxonomy information |
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| >gi|157890956|dbj|BAF81519.1| glycerophosphodiester phosphodiesterase [Brassica rapa] | Back alignment and taxonomy information |
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| >gi|300637793|gb|ADK26134.1| glycerophosphodiester phosphodiesterase 1 [Lupinus albus] gi|300637849|gb|ADK26136.1| glycerophosphodiester phosphodiesterase 1 [Lupinus albus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | ||||||
| TAIR|locus:2142823 | 372 | GDPD6 "glycerophosphodiester p | 0.918 | 0.965 | 0.818 | 4.5e-162 | |
| TAIR|locus:2019642 | 392 | GDPD5 "glycerophosphodiester p | 0.976 | 0.974 | 0.722 | 2.5e-152 | |
| UNIPROTKB|P09394 | 358 | glpQ "GlpQ" [Escherichia coli | 0.726 | 0.793 | 0.323 | 3.7e-32 | |
| UNIPROTKB|Q9KN30 | 371 | VC_A0136 "Glycerophosphoryl di | 0.749 | 0.789 | 0.301 | 2.8e-27 | |
| TIGR_CMR|VC_A0136 | 371 | VC_A0136 "glycerophosphoryl di | 0.749 | 0.789 | 0.301 | 2.8e-27 | |
| TAIR|locus:2173977 | 766 | SVL1 "SHV3-like 1" [Arabidopsi | 0.764 | 0.390 | 0.235 | 6.9e-17 | |
| TAIR|locus:2085710 | 729 | SVL3 "SHV3-like 3" [Arabidopsi | 0.757 | 0.406 | 0.243 | 1.8e-16 | |
| TAIR|locus:2161248 | 750 | SVL5 "SHV3-like 5" [Arabidopsi | 0.350 | 0.182 | 0.312 | 5.2e-16 | |
| TAIR|locus:2155816 | 753 | SVL4 "SHV3-like 4" [Arabidopsi | 0.350 | 0.181 | 0.312 | 3.1e-14 | |
| TAIR|locus:2116377 | 759 | SHV3 "SHAVEN 3" [Arabidopsis t | 0.480 | 0.247 | 0.221 | 5.8e-13 |
| TAIR|locus:2142823 GDPD6 "glycerophosphodiester phosphodiesterase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1578 (560.5 bits), Expect = 4.5e-162, P = 4.5e-162
Identities = 297/363 (81%), Positives = 327/363 (90%)
Query: 9 IPLLFLSL-IAGCAARPLYPLPSKLDIH--KQPLQTSRPYNLAHRGSNGEFPEETAAAYM 65
+PLL LSL +A CA+RPLY LPS+ H K+PLQTSRPYNLAHRGSNGE PEETA AYM
Sbjct: 7 LPLLLLSLLVANCASRPLYRLPSEAK-HATKKPLQTSRPYNLAHRGSNGELPEETAPAYM 65
Query: 66 RAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125
RAIEEGADFIETDIL+SKDGVLICHHDV LDDTT++ADHKEFADRKRT VQG+N TGFF
Sbjct: 66 RAIEEGADFIETDILSSKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFF 125
Query: 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFI 185
VDFTL+ELKTL AKQRY FRDQQYNGKFPIITF+EYISIALDA RVVGIYPE+KNPVF+
Sbjct: 126 TVDFTLKELKTLGAKQRYPFRDQQYNGKFPIITFDEYISIALDAPRVVGIYPEIKNPVFM 185
Query: 186 NQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK 245
NQ VKWADGKKFEDKFV+TLKKYGYKG+Y+S++WLKQPIFIQSFA TSLVYISN TDSPK
Sbjct: 186 NQQVKWADGKKFEDKFVETLKKYGYKGSYLSEDWLKQPIFIQSFAATSLVYISNMTDSPK 245
Query: 246 IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVA 305
+FLIDDV ILTEDTN++Y+EITSDAYL+YIK Y +GIGPWKDT+VPV NN TPTDLVA
Sbjct: 246 LFLIDDVTILTEDTNKTYAEITSDAYLDYIKPYVIGIGPWKDTIVPVNNNRLMTPTDLVA 305
Query: 306 RAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQELT 365
RAH+ +LQVHPYTYRNE+QFLH F QDPY EYDYW+NKIGVDGLFTDF GSLHNYQEL
Sbjct: 306 RAHSRNLQVHPYTYRNENQFLHLEFNQDPYLEYDYWLNKIGVDGLFTDFTGSLHNYQELK 365
Query: 366 SPV 368
SP+
Sbjct: 366 SPL 368
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| TAIR|locus:2019642 GDPD5 "glycerophosphodiester phosphodiesterase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P09394 glpQ "GlpQ" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KN30 VC_A0136 "Glycerophosphoryl diester phosphodiesterase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_A0136 VC_A0136 "glycerophosphoryl diester phosphodiesterase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| TAIR|locus:2173977 SVL1 "SHV3-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2085710 SVL3 "SHV3-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2161248 SVL5 "SHV3-like 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155816 SVL4 "SHV3-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2116377 SHV3 "SHAVEN 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00820009 | SubName- Full=Putative uncharacterized protein; (399 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | gw1.III.525.1 | • | 0.899 | ||||||||
 | gw1.I.6971.1 | • | 0.899 | ||||||||
 | grail3.0084003101 | • | 0.899 | ||||||||
 | grail3.0028024201 | • | 0.899 | ||||||||
 | fgenesh4_pm.C_LG_XVIII000124 | • | 0.899 | ||||||||
 | fgenesh4_pm.C_LG_XI000039 | • | 0.899 | ||||||||
 | fgenesh4_pg.C_LG_II000596 | • | 0.899 | ||||||||
 | eugene3.00140065 | • | 0.899 | ||||||||
 | gw1.XIII.3117.1 | • | • | 0.569 | |||||||
 | eugene3.72860001 | • | 0.488 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 391 | |||
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 1e-172 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 1e-135 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 1e-54 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 3e-52 | |
| PRK11143 | 355 | PRK11143, glpQ, glycerophosphodiester phosphodiest | 6e-52 | |
| pfam03009 | 238 | pfam03009, GDPD, Glycerophosphoryl diester phospho | 7e-48 | |
| cd08601 | 256 | cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p | 1e-43 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 8e-36 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 4e-34 | |
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 7e-34 | |
| cd08563 | 230 | cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph | 3e-26 | |
| cd08582 | 233 | cd08582, GDPD_like_2, Glycerophosphodiester phosph | 2e-25 | |
| cd08561 | 249 | cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glyceropho | 8e-22 | |
| cd08566 | 240 | cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph | 2e-20 | |
| cd08567 | 263 | cd08567, GDPD_SpGDE_like, Glycerophosphodiester ph | 1e-18 | |
| cd08560 | 356 | cd08560, GDPD_EcGlpQ_like_1, Glycerophosphodiester | 7e-17 | |
| cd08579 | 220 | cd08579, GDPD_memb_like, Glycerophosphodiester pho | 2e-16 | |
| cd08556 | 189 | cd08556, GDPD, Glycerophosphodiester phosphodieste | 7e-16 | |
| cd08575 | 264 | cd08575, GDPD_GDE4_like, Glycerophosphodiester pho | 1e-15 | |
| cd08570 | 234 | cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste | 2e-14 | |
| cd08562 | 229 | cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p | 5e-14 | |
| cd08573 | 258 | cd08573, GDPD_GDE1, Glycerophosphodiester phosphod | 1e-13 | |
| cd08581 | 229 | cd08581, GDPD_like_1, Glycerophosphodiester phosph | 4e-13 | |
| cd08565 | 235 | cd08565, GDPD_pAtGDE_like, Glycerophosphodiester p | 1e-12 | |
| cd08568 | 226 | cd08568, GDPD_TmGDE_like, Glycerophosphodiester ph | 4e-10 | |
| cd08556 | 189 | cd08556, GDPD, Glycerophosphodiester phosphodieste | 2e-09 | |
| cd08612 | 300 | cd08612, GDPD_GDE4, Glycerophosphodiester phosphod | 4e-09 | |
| cd08574 | 252 | cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester pho | 6e-09 | |
| cd08585 | 237 | cd08585, GDPD_like_3, Glycerophosphodiester phosph | 1e-08 | |
| cd08609 | 315 | cd08609, GDPD_GDE3, Glycerophosphodiester phosphod | 2e-08 | |
| cd08555 | 179 | cd08555, PI-PLCc_GDPD_SF, Catalytic domain of phos | 3e-08 | |
| cd08580 | 263 | cd08580, GDPD_Rv2277c_like, Glycerophosphodiester | 9e-08 | |
| cd08610 | 316 | cd08610, GDPD_GDE6, Glycerophosphodiester phosphod | 1e-07 | |
| cd08564 | 265 | cd08564, GDPD_GsGDE_like, Glycerophosphodiester ph | 1e-05 | |
| cd08607 | 290 | cd08607, GDPD_GDE5, Glycerophosphodiester phosphod | 1e-05 | |
| cd08608 | 351 | cd08608, GDPD_GDE2, Glycerophosphodiester phosphod | 5e-05 | |
| PRK09454 | 249 | PRK09454, ugpQ, cytoplasmic glycerophosphodiester | 7e-05 | |
| cd08613 | 309 | cd08613, GDPD_GDE4_like_1, Glycerophosphodiester p | 8e-05 | |
| cd08572 | 293 | cd08572, GDPD_GDE5_like, Glycerophosphodiester pho | 1e-04 |
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
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Score = 481 bits (1240), Expect = e-172
Identities = 176/321 (54%), Positives = 219/321 (68%), Gaps = 21/321 (6%)
Query: 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIAD 103
P +AHRG++G PE T AAY AIE+GADFIE D++++KDGVLIC H+ L TT++AD
Sbjct: 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVAD 60
Query: 104 HKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYI 163
H EFADRK T V GVN TG+F DFTL ELKTLRA+QR +RDQ Y+G+FPI TFEE I
Sbjct: 61 HPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPYRDQSYDGQFPIPTFEEII 120
Query: 164 SIALDAQ----RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
++A A R VGIYPE+K+P + N G EDK ++TLKKYGY G
Sbjct: 121 ALAKAASAATGRTVGIYPEIKHPTYFNA----PLGLPMEDKLLETLKKYGYTGK------ 170
Query: 220 LKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDT----NQSYSEITSDAYLNYI 275
K P+FIQSF T+L Y+ NKTD P + LIDD I +DT +++Y+++T+DA L I
Sbjct: 171 -KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEI 229
Query: 276 KEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDP 334
Y GIGPWKD ++P AN TPTDLV AHA LQVHPYT+RNE+ FL +F DP
Sbjct: 230 ATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDP 289
Query: 335 YREYDYWINKIGVDGLFTDFP 355
Y EY +++ GVDGLFTDFP
Sbjct: 290 YAEYRAFLD-AGVDGLFTDFP 309
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 |
| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family | Back alignment and domain information |
|---|
| >gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >gnl|CDD|176504 cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176510 cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176503 cd08560, GDPD_EcGlpQ_like_1, Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176521 cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176515 cd08573, GDPD_GDE1, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >gnl|CDD|176508 cd08565, GDPD_pAtGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176511 cd08568, GDPD_TmGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176553 cd08612, GDPD_GDE4, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176516 cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176527 cd08585, GDPD_like_3, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >gnl|CDD|176551 cd08609, GDPD_GDE3, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176498 cd08555, PI-PLCc_GDPD_SF, Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176507 cd08564, GDPD_GsGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176549 cd08607, GDPD_GDE5, Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176550 cd08608, GDPD_GDE2, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|236524 PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|176554 cd08613, GDPD_GDE4_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
| >gnl|CDD|176514 cd08572, GDPD_GDE5_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 100.0 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 100.0 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 100.0 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 100.0 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 100.0 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 100.0 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 100.0 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 100.0 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 100.0 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 100.0 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 100.0 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 100.0 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 100.0 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 100.0 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 100.0 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 99.96 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 99.94 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.91 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 99.59 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 99.52 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 98.74 | |
| PF13653 | 30 | GDPD_2: Glycerophosphoryl diester phosphodiesteras | 98.65 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 98.63 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 98.16 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 98.04 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 97.96 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 97.5 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 97.47 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 97.39 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 97.39 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 97.37 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 97.36 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 97.35 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 97.31 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 97.29 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 97.29 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 97.27 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 97.27 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 97.27 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 97.15 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 97.14 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 97.04 | |
| PF10223 | 244 | DUF2181: Uncharacterized conserved protein (DUF218 | 97.02 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 96.99 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 96.95 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 95.93 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 95.58 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 95.49 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 95.2 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 95.2 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 94.47 | |
| cd08589 | 324 | PI-PLCc_SaPLC1_like Catalytic domain of Streptomyc | 93.99 | |
| PF08139 | 25 | LPAM_1: Prokaryotic membrane lipoprotein lipid att | 92.1 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 91.07 | |
| cd00137 | 274 | PI-PLCc Catalytic domain of prokaryotic and eukary | 90.26 | |
| PLN02591 | 250 | tryptophan synthase | 89.37 | |
| COG2200 | 256 | Rtn c-di-GMP phosphodiesterase class I (EAL domain | 87.81 | |
| PF00388 | 146 | PI-PLC-X: Phosphatidylinositol-specific phospholip | 87.21 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 86.89 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 84.51 | |
| cd08590 | 267 | PI-PLCc_Rv2075c_like Catalytic domain of uncharact | 80.01 |
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-54 Score=400.10 Aligned_cols=288 Identities=32% Similarity=0.502 Sum_probs=243.5
Q ss_pred CEEEecCCCCCCCchhHHHHHHHHHHcCC--CEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccc
Q 016353 44 PYNLAHRGSNGEFPEETAAAYMRAIEEGA--DFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT 121 (391)
Q Consensus 44 p~iiaHRG~~~~~pENTl~Af~~A~~~Ga--d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~ 121 (391)
|+||||||+++.+||||++||+.|++.|+ ++||||||+||||++||+||.+|.|+|++.. .|+.|++++.++|+..
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~--~F~~r~~t~~idG~~~ 78 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIAR--VYPKRKKTYSVNGVST 78 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCcc--cccccccccccccccc
Confidence 68999999999999999999999999999 4799999999999999999999999999986 4999999999999999
Q ss_pred ccceecccCHHHHccccccccccCCccccCCCccccCHHHHHHHHHhcCCceeEEEeecCchhccccccccCcccHHHHH
Q 016353 122 TGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF 201 (391)
Q Consensus 122 ~g~~v~dlt~~EL~~l~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v 201 (391)
+|+++.|+||+||++|++...+.+|++.|.++.+||||+|+|++++. .++.+|||.+.+++. .+..+++.+
T Consensus 79 ~g~~~~d~TlaELk~L~~~~~~~~r~~~~~g~~~IpTLeEvl~~~~~----~gi~i~ie~~~~~~~-----~gl~~~~~l 149 (299)
T cd08603 79 KGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQYPISTVEDVVTLAKP----EGLWLNVQHDAFYQQ-----HNLSMSSYL 149 (299)
T ss_pred CCceeccCCHHHHhhCCCCCCcccCCcccCCcCCCCCHHHHHHHhHh----cCeEEEEecHHHHHH-----cCCCHHHHH
Confidence 99889999999999999987666677888876699999999999874 345556666655543 467899999
Q ss_pred HHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhc---CCCceEE-EEecccccccccccccccccchHHHHHHHh
Q 016353 202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK---TDSPKIF-LIDDVDILTEDTNQSYSEITSDAYLNYIKE 277 (391)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~---~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 277 (391)
+++|++++ .++||||+...|+++++. ...+.++ +++...+ .......|..+.. .+++|++
T Consensus 150 ~~~L~~~~-------------~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~-~~~~~~~y~~~~~--~L~eIa~ 213 (299)
T cd08603 150 LSLSKTVK-------------VDYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDV-EPSTNQTYGSILK--NLTFIKT 213 (299)
T ss_pred HHHHHHcC-------------cEEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCc-CCCCCccHHHHHH--hHHHHHH
Confidence 99999886 389999999999999976 3455664 5554332 2234567877765 6889999
Q ss_pred hhhhcCCCcceeeecC-CCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcC---ccEEEeC
Q 016353 278 YCVGIGPWKDTVVPVA-NNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIG---VDGLFTD 353 (391)
Q Consensus 278 ~~~~i~~~~~~l~~~~-~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~G---VdgIiTD 353 (391)
||.+++|+..++.|.. ..+......+|+.+|++|+.||+||+.++.. .+++|..||..|+.. +++.| ||||+||
T Consensus 214 yAdgig~~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~-~~~~~~~d~~~e~~~-~~~~g~~~vDGvfTD 291 (299)
T cd08603 214 FASGILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFD-ISYNYSYDPVAEYLS-FVGNGNFSVDGVLSD 291 (299)
T ss_pred HHhhcCCChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCCC-ccccccCCHHHHHHH-HHhcCCCCCCEEEec
Confidence 9999999999998863 4455556689999999999999999999887 788999999999986 45667 9999999
Q ss_pred CchhHHH
Q 016353 354 FPGSLHN 360 (391)
Q Consensus 354 ~P~~l~~ 360 (391)
+|+++.+
T Consensus 292 fP~~a~~ 298 (299)
T cd08603 292 FPITASE 298 (299)
T ss_pred Cchhhcc
Confidence 9998753
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
| >PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A | Back alignment and domain information |
|---|
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
| >PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function | Back alignment and domain information |
|---|
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
| >cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins | Back alignment and domain information |
|---|
| >PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II) | Back alignment and domain information |
|---|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
| >cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C | Back alignment and domain information |
|---|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
| >COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3 | Back alignment and domain information |
|---|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
| >cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 391 | ||||
| 1ydy_A | 356 | Crystal Structure Of Periplasmic Glycerophosphodies | 8e-33 | ||
| 1t8q_A | 336 | Structural Genomics, Crystal Structure Of Glyceroph | 7e-32 | ||
| 2oog_A | 287 | Crystal Structure Of Glycerophosphoryl Diester Phos | 1e-12 | ||
| 2pz0_A | 252 | Crystal Structure Of Glycerophosphodiester Phosphod | 4e-11 | ||
| 1zcc_A | 248 | Crystal Structure Of Glycerophosphodiester Phosphod | 2e-07 | ||
| 3qvq_A | 252 | The Structure Of An Oleispira Antarctica Phosphodie | 9e-07 | ||
| 1o1z_A | 234 | Crystal Structure Of Glycerophosphodiester Phosphod | 1e-06 | ||
| 3i10_A | 278 | Crystal Structure Of Putative Glycerophosphoryl Die | 1e-05 | ||
| 3ch0_A | 272 | Crystal Structure Of Glycerophosphoryl Diester Phos | 2e-04 | ||
| 1v8e_A | 224 | Crystal Structure Of Glycerophosphoryl Diester Phos | 3e-04 |
| >pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester Phosphodiesterase From Escherichia Coli Length = 356 | Back alignment and structure |
|
| >pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From E. Coli Length = 336 | Back alignment and structure |
| >pdb|2OOG|A Chain A, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From Staphylococcus Aureus Length = 287 | Back alignment and structure |
| >pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) From T. Tengcongensis Length = 252 | Back alignment and structure |
| >pdb|1ZCC|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase From Agrobacterium Tumefaciens Str.C58 Length = 248 | Back alignment and structure |
| >pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase Olei02445 In Complex With The Product Sn-Glycerol-3-Phosphate Length = 252 | Back alignment and structure |
| >pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga Maritima At 1.60 A Resolution Length = 234 | Back alignment and structure |
| >pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester Phosphodiesterase (Np_812074.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.35 A Resolution Length = 278 | Back alignment and structure |
| >pdb|3CH0|A Chain A, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase (Yp_677622.1) From Cytophaga Hutchinsonii Atcc 33406 At 1.50 A Resolution Length = 272 | Back alignment and structure |
| >pdb|1V8E|A Chain A, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From Thermus Thermophilus Hb8 Length = 224 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
Score = 291 bits (747), Expect = 1e-96
Identities = 105/384 (27%), Positives = 166/384 (43%), Gaps = 68/384 (17%)
Query: 8 FIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRA 67
+ ++ +++ G +A ++ +AHRG++G PE T A A
Sbjct: 9 SMAIMMSTIVMGSSA--------------MAADSNEKIVIAHRGASGYLPEHTLPAKAMA 54
Query: 68 IEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVV 127
+GAD++E D++ +KD L+ HD +LD T++AD RK ++ +
Sbjct: 55 YAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---------DGRYYAI 105
Query: 128 DFTLEELKTLRAKQRYSFRD----QQYNGKFP-------IITFEEYISIALDA----QRV 172
DFTL+E+K+L+ + + + Q Y G+FP + TFEE I +
Sbjct: 106 DFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKN 165
Query: 173 VGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPT 232
+GIYPE+K P F +Q GK K ++ LKKYGY G +++Q F
Sbjct: 166 IGIYPEIKAPWFHHQE-----GKDIAAKTLEVLKKYGYTGK-------DDKVYLQCFDAD 213
Query: 233 SLVYISNK------TDSPKIFLIDDVDILTED--------TNQSYSEITSDAYLNYIKEY 278
L I N+ + + LI D N +Y + + + EY
Sbjct: 214 ELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEY 273
Query: 279 CVGIGPWKDTVVP-VANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYRE 337
GIGP ++ + + T +V A L VHPYT R++ + D +
Sbjct: 274 ADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKL---PEYTPDVNQL 330
Query: 338 YDYWINKIGVDGLFTDFPGSLHNY 361
YD NK GV+GLFTDFP +
Sbjct: 331 YDALYNKAGVNGLFTDFPDKAVKF 354
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313 | Back alignment and structure |
|---|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278 | Back alignment and structure |
|---|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272 | Back alignment and structure |
|---|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252 | Back alignment and structure |
|---|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252 | Back alignment and structure |
|---|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258 | Back alignment and structure |
|---|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250 | Back alignment and structure |
|---|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247 | Back alignment and structure |
|---|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292 | Back alignment and structure |
|---|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248 | Back alignment and structure |
|---|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238 | Back alignment and structure |
|---|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234 | Back alignment and structure |
|---|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224 | Back alignment and structure |
|---|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* Length = 302 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| 1ydy_A | 356 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 100.0 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 2oog_A | 287 | Glycerophosphoryl diester phosphodiesterase; phosp | 100.0 | |
| 3ks6_A | 250 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 3ch0_A | 272 | Glycerophosphodiester phosphodiesterase; YP_677622 | 100.0 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 100.0 | |
| 3l12_A | 313 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 3mz2_A | 292 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 1zcc_A | 248 | Glycerophosphodiester phosphodiesterase; NYSGXRC, | 100.0 | |
| 3no3_A | 238 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 1vd6_A | 224 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 1o1z_A | 234 | GDPD, glycerophosphodiester phosphodiesterase; TM1 | 100.0 | |
| 3i10_A | 278 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 1xx1_A | 285 | Smase I, sphingomyelinase I; structure, quick cryo | 100.0 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 99.91 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 95.43 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 95.11 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 94.79 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 93.47 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 91.6 | |
| 3h4x_A | 339 | Phosphatidylinositol-specific phospholipase C1; PI | 91.04 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 89.78 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 81.58 |
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-52 Score=406.45 Aligned_cols=321 Identities=32% Similarity=0.551 Sum_probs=213.6
Q ss_pred hhhHHHHHHHHHhhcCCcCCCCCCCCCccccCCCCCCCCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCC
Q 016353 5 STCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKD 84 (391)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkD 84 (391)
.++++.++++.+++||..... ...+|.+|||||+++.+||||++||+.|++.|+|+||+|||+|||
T Consensus 6 ~~~~~~~~~~~~~~~c~~~~~--------------~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkD 71 (356)
T 1ydy_A 6 KNLSMAIMMSTIVMGSSAMAA--------------DSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKD 71 (356)
T ss_dssp -------------------------------------CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTT
T ss_pred HHHHHHHHHHHhhhhhhhccc--------------cCCCceEEEeCCCCCCCCcchHHHHHHHHHcCCCEEEeeeEECCC
Confidence 445555666777899998664 146799999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCcccccccCCccccccccccccccCcccccceecccCHHHHcccccccccc---------CCc--cccCCC
Q 016353 85 GVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYS---------FRD--QQYNGK 153 (391)
Q Consensus 85 g~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~v~dlt~~EL~~l~~~~~~~---------~r~--~~~~~~ 153 (391)
|++||+||.+++|+|++.. .++.++++ +|. | +|.++||+||++|+++.||. |+. ....+.
T Consensus 72 g~lVv~HD~~l~rtt~~~~--~f~~~~~~---~g~---~-~v~d~T~~eL~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 142 (356)
T 1ydy_A 72 DNLVVLHDHYLDRVTDVAD--RFPDRARK---DGR---Y-YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSD 142 (356)
T ss_dssp SCEEECSSSBCTTTBSHHH--HSTTCCCT---TSC---C-BGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSC
T ss_pred CcEEEeCCChHHhhcCccc--cccccccc---CCC---c-chhhCcHHHHHhCCCCccccccccccccccccccccccCC
Confidence 9999999999999998653 34443321 121 4 79999999999999998763 111 111124
Q ss_pred ccccCHHHHHHHHHhc----CCceeEEEeecCchhccccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEcc
Q 016353 154 FPIITFEEYISIALDA----QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSF 229 (391)
Q Consensus 154 ~~ipTLeEvL~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf 229 (391)
++||||+|+|++++.. +..+.++||||.+..... .+..+++.++++++++++.. ..++++|+||
T Consensus 143 ~~iptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~-----~~~~~~~~v~~~l~~~~~~~-------~~~~v~i~SF 210 (356)
T 1ydy_A 143 FRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYTG-------KDDKVYLQCF 210 (356)
T ss_dssp CCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHHHH-----TTCCHHHHHHHHHHHTTCCS-------TTSSBEEEES
T ss_pred CcCCCHHHHHHHHHHhhhcccCCceEEEeecCcccccc-----cchhHHHHHHHHHHHcCCCC-------CCCCEEEEcC
Confidence 6999999999999852 235899999998653211 23468999999999999742 0158999999
Q ss_pred ChhHHHHHhhc-----CCC-ceEEEEeccccccc--------ccccccccccchHHHHHHHhhhhhcCCCcceeeec-CC
Q 016353 230 APTSLVYISNK-----TDS-PKIFLIDDVDILTE--------DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-AN 294 (391)
Q Consensus 230 ~~~~l~~l~~~-----~p~-~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~-~~ 294 (391)
++..|+++++. .|. +.++|+....+... .....|..+.....+..+..++.++++....+.+. ..
T Consensus 211 ~~~~l~~~~~~~~p~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~p~~~~~~~~~~~ 290 (356)
T 1ydy_A 211 DADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQ 290 (356)
T ss_dssp CHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEECTTSCEEECCCGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCB
T ss_pred CHHHHHHHHhhcccccCCCceEEEEeccCcccccccccccccccccchhhhcchhhHHHHHhhCeEEccCHHHhcccccc
Confidence 99999999998 564 55667653221000 00112322222334555666666666654333211 01
Q ss_pred CCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccCCCchHHHHHHHHHcCccEEEeCCchhHHHHHh
Q 016353 295 NYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNYQE 363 (391)
Q Consensus 295 ~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~ 363 (391)
.....++++|+.+|++|+.|++||||++. +. .|..++...+.+.+.++||||||||+|+.+.++++
T Consensus 291 ~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~-l~--~~~~d~~~~~~~~l~~~GVDgIiTD~P~~~~~~l~ 356 (356)
T 1ydy_A 291 PGNIKLTGMVQDAQQNKLVVHPYTVRSDK-LP--EYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLN 356 (356)
T ss_dssp TTBCCBCSHHHHHHHTTCEECCBCBCTTS-CC--TTCSSHHHHHHHHHTTSCCSEEEESCHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHCCCEEEEEEECccc-cc--ccccCHHHHHHHHHHHcCCCEEEeCCHHHHHHhhC
Confidence 11234589999999999999999999873 21 23444444444446789999999999999988763
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A | Back alignment and structure |
|---|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* | Back alignment and structure |
|---|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 | Back alignment and structure |
|---|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 | Back alignment and structure |
|---|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A | Back alignment and structure |
|---|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 | Back alignment and structure |
|---|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* | Back alignment and structure |
|---|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
| >3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A | Back alignment and structure |
|---|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 391 | ||||
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 4e-52 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 6e-21 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 1e-15 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 7e-05 | |
| d1o1za_ | 226 | c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot | 8e-14 | |
| d1o1za_ | 226 | c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot | 0.004 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Score = 174 bits (442), Expect = 4e-52
Identities = 101/344 (29%), Positives = 149/344 (43%), Gaps = 54/344 (15%)
Query: 48 AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
AHRG++G PE T A A +GAD++E D++ +KD L+ HD +LD T++AD
Sbjct: 7 AHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPD 66
Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAK-----------QRYSFRDQQYNGKFPI 156
R ++ +DFTL+E+K+L+ Q Y R F +
Sbjct: 67 RAR---------KDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRV 117
Query: 157 ITFEEYI----SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKG 212
TFEE I + + +GIYPE+K P F +Q GK K ++ LKKYGY G
Sbjct: 118 HTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQE-----GKDIAAKTLEVLKKYGYTG 172
Query: 213 AYMSKEWLKQPIFIQSFAPTSLVYISNKTDS------PKIFLIDDVD--------ILTED 258
+++Q F L I N+ + + LI D
Sbjct: 173 K-------DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSW 225
Query: 259 TNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQVHPY 317
N +Y + + + EY GIGP ++ + + T +V A L VHPY
Sbjct: 226 VNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPY 285
Query: 318 TYRNEHQFLHFNFLQDPYREYDYWINKIGVDGLFTDFPGSLHNY 361
T R++ + D + YD NK GV+GLFTDFP +
Sbjct: 286 TVRSDKL---PEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKF 326
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
|---|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
|---|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
|---|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 | Back information, alignment and structure |
|---|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 100.0 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 100.0 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 100.0 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 100.0 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 97.39 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 97.13 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 85.26 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 82.17 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-49 Score=375.48 Aligned_cols=298 Identities=33% Similarity=0.512 Sum_probs=222.1
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHcCCCEEEeeeEEcCCCeEEEEcCCCcccccccCCccccccccccccccCccc
Q 016353 42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT 121 (391)
Q Consensus 42 ~~p~iiaHRG~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~ 121 (391)
++|+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|.|+|+....+.... ....
T Consensus 1 ~~~liIaHRG~~~~~PENTl~af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~--------~~~~ 72 (328)
T d1ydya1 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRA--------RKDG 72 (328)
T ss_dssp CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCC--------CTTS
T ss_pred CCCEEEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeEccCCcEEEECCchhhcccCCCCCccccc--------ccCC
Confidence 36899999999999999999999999999999999999999999999999999999998653111110 0111
Q ss_pred ccceecccCHHHHcccccccccc-----------CCccccCCCccccCHHHHHHHHHhc----CCceeEEEeecCchhcc
Q 016353 122 TGFFVVDFTLEELKTLRAKQRYS-----------FRDQQYNGKFPIITFEEYISIALDA----QRVVGIYPEMKNPVFIN 186 (391)
Q Consensus 122 ~g~~v~dlt~~EL~~l~~~~~~~-----------~r~~~~~~~~~ipTLeEvL~~~~~~----~~~~~l~iEiK~~~~~~ 186 (391)
.| .|.++|++||++++++.++. .+.....+..+||||+|+++.+++. +..+.+++|+|.+....
T Consensus 73 ~~-~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~~~~~~~~~~~~~~~~~~~~~iEiK~~~~~~ 151 (328)
T d1ydya1 73 RY-YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHH 151 (328)
T ss_dssp CC-BGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHHH
T ss_pred Cc-eeeecchhhhhccccccccccccccccccccccccccCCCcccCcHHHHHHHHHHHhhhcCCCceeeeccCCcchhh
Confidence 24 69999999999999987642 1222223456899999999999742 34588999999876543
Q ss_pred ccccccCcccHHHHHHHHHHHcCCCCcccccccCCCCEEEEccChhHHHHHhhc-----CCC-ceEEEEecccccc----
Q 016353 187 QHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK-----TDS-PKIFLIDDVDILT---- 256 (391)
Q Consensus 187 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~vii~Sf~~~~l~~l~~~-----~p~-~~~~l~~~~~~~~---- 256 (391)
. .+...++.+..++++++..+ ..++++++||++..++.+++. .+. +.+.++.......
T Consensus 152 ~-----~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 219 (328)
T d1ydya1 152 Q-----EGKDIAAKTLEVLKKYGYTG-------KDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQK 219 (328)
T ss_dssp H-----TTCCHHHHHHHHHHHTTCCS-------TTSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEE
T ss_pred h-----cchhhHHHHHHHHHHhcccC-------CCceEEEEecCHHHHHHHHHHcCcccccccceeeeecccccchhccc
Confidence 2 34568889999999987653 136899999999999999864 122 2233333221110
Q ss_pred ----cccccccccccchHHHHHHHhhhhhcCCCcceeeec-CCCCCCCCHHHHHHHHHcCCeEEEEeecCcccccccccC
Q 016353 257 ----EDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQVHPYTYRNEHQFLHFNFL 331 (391)
Q Consensus 257 ----~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~l~~~-~~~~~~~~~~~v~~~~~~Gl~V~~WTvn~~~~~~~~~~~ 331 (391)
......|..+.....+..+..++.++++....+.+. .......++.+|+.+|++|+.|++||||+++.+ ++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~~~~---~~~ 296 (328)
T d1ydya1 220 QPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLP---EYT 296 (328)
T ss_dssp CTTSCEEECCCGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTSCC---TTC
T ss_pred cccccccccchhhhcChhhHHHHHhhCCeeecchhhcccccccccccCCHHHHHHHHHCCCEEEEEccCChHHh---hhc
Confidence 011223444555566777777777766554444333 234455678999999999999999999998865 567
Q ss_pred CCchHHHHHHHHHcCccEEEeCCchhHHHHHh
Q 016353 332 QDPYREYDYWINKIGVDGLFTDFPGSLHNYQE 363 (391)
Q Consensus 332 ~~~~~~~~~~l~~~GVdgIiTD~P~~l~~~~~ 363 (391)
.|+..++...+.++||||||||+|+++.++++
T Consensus 297 ~d~~~~~~~~~~~~GVDgIiTD~P~~~~~~l~ 328 (328)
T d1ydya1 297 PDVNQLYDALYNKAGVNGLFTDFPDKAVKFLN 328 (328)
T ss_dssp SSHHHHHHHHHTTSCCSEEEESCHHHHHHHHC
T ss_pred cCHHHHHHHHHHHcCCcEEEEcCHHHHHHHhC
Confidence 88888888888899999999999999999874
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|